Citrus Sinensis ID: 021459

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
maaaqtppykpyrhfktltahsRAVScvkfsndgtllasasLDKTVIIWSASSLALVHRFVghsegisdlawssdshyicsasddrtlriwdartpfdclktlrghsdfvfcvnfnpqsnlivsgsfdesiRIWEVktgkctrvirahsmpvtsvhfnrdgslivsgshdgtckiwdagegaclktliddkdpavsfakfspngkfILVGTLDSTLKLWNYSagkflkiytghtnkkycitstfsvtngkyivsgsedncVYVWDLQQKTMIQKldghtdsvisvtchptenkiasagldgdrTVRVWVQDR
Flexible Loop (DISEMBL)
maaaqtppykpyrhfktlTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPtenkiasagldgdrtvrvwvqdr
Low Complexity Region (SEG)
MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Disordered region (IsUnstruct)
***********YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV***
Disordered Region (DISOPRED)
*AAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Disordered Region (DISEMBL)
MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Disordered Region (DISPRO)
*****TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q498M4	334	WD repeat-containing prot	yes	no	0.971	0.907	0.645	1e-113
P61965	334	WD repeat-containing prot	yes	no	0.971	0.907	0.645	1e-113
P61964	334	WD repeat-containing prot	yes	no	0.971	0.907	0.645	1e-113
Q2KIG2	334	WD repeat-containing prot	yes	no	0.971	0.907	0.645	1e-113
Q5M786	334	WD repeat-containing prot	yes	no	0.983	0.919	0.634	1e-112
Q5RE95	330	WD repeat-containing prot	yes	no	0.971	0.918	0.619	1e-110
Q86VZ2	330	WD repeat-containing prot	no	no	0.971	0.918	0.619	1e-110
Q9V3J8	361	Protein will die slowly O	yes	no	0.964	0.833	0.627	1e-109
Q4V8C4	328	WD repeat-containing prot	no	no	0.971	0.923	0.616	1e-108
Q9D7H2	328	WD repeat-containing prot	no	no	0.980	0.932	0.603	1e-107

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query: 307 VWVQD 311
           +W  D
Sbjct: 329 LWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.
Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query: 307 VWVQD 311
           +W  D
Sbjct: 329 LWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query: 307 VWVQD 311
           +W  D
Sbjct: 329 LWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query: 307 VWVQD 311
           +W  D
Sbjct: 329 LWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/309 (63%), Positives = 236/309 (76%), Gaps = 2/309 (0%)

Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 26  SKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 85

Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 86  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 144

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204

Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YT H N+KYCI +
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKYCIFA 264

Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALEND 324

Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 325 KTIKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/305 (61%), Positives = 234/305 (76%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P  P    K TL  H+ AVS VKFS +G  LAS+S D+ +IIW A          GH+  
Sbjct: 26  PENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLE 85

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS  + SASDD+TL++WD R+   CLKTL+GHS++VFC NFNP SNLI+SGS
Sbjct: 86  ISDVAWSSDSSRLVSASDDKTLKLWDMRSG-KCLKTLKGHSNYVFCCNFNPPSNLIISGS 144

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDE+++IWEVKTGKC + + AHS PV++VHFN  GSLIVSGS+DG C+IWDA  G CLKT
Sbjct: 145 FDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKT 204

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           L+DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS G+ LK YTGH N+KYCI + FSV
Sbjct: 205 LVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSV 264

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 265 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIK 324

Query: 307 VWVQD 311
           +W+ +
Sbjct: 325 LWMSN 329

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/305 (61%), Positives = 234/305 (76%), Gaps = 2/305 (0%)

Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P  P    K TL  H+ AVS VKFS +G  LAS+S D+ +IIW A          GH+  
Sbjct: 26  PENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLE 85

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS  + SASDD+TL++WD R+   CLKTL+GHS++VFC NFNP SNLI+SGS
Sbjct: 86  ISDVAWSSDSSRLVSASDDKTLKLWDVRSG-KCLKTLKGHSNYVFCCNFNPPSNLIISGS 144

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDE+++IWEVKTGKC + + AHS PV++VHFN  GSLIVSGS+DG C+IWDA  G CLKT
Sbjct: 145 FDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKT 204

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           L+DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS G+ LK YTGH N+KYCI + FSV
Sbjct: 205 LVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSV 264

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 265 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIK 324

Query: 307 VWVQD 311
           +W+ +
Sbjct: 325 LWMSN 329

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/303 (62%), Positives = 231/303 (76%), Gaps = 2/303 (0%)

Query: 10  KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  GIS
Sbjct: 59  KPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 118

Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           D+AWSSDS  + S SDD+TL++W+  T    LKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 119 DVAWSSDSRLLVSGSDDKTLKVWELST-GKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 177

Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           ES+RIW+V+TGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKTLI
Sbjct: 178 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 237

Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
           DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT 
Sbjct: 238 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 297

Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           GK+IVSGSEDN VY+W+LQ K ++QKL GHTD+V+   CHPTEN IASA L+ D+T+++W
Sbjct: 298 GKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLW 357

Query: 309 VQD 311
             D
Sbjct: 358 KSD 360

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/305 (61%), Positives = 233/305 (76%), Gaps = 2/305 (0%)

Query: 8   PYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP Y    TL  HS A+S VKFS +G  LAS++ D  +IIW A          GHS  
Sbjct: 24  PQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLE 83

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS  + SASDD+TL++WD R+   CLKTL+GHSDFVFC +FNP SNLIVSGS
Sbjct: 84  ISDVAWSSDSSRLVSASDDKTLKLWDVRSG-KCLKTLKGHSDFVFCCDFNPPSNLIVSGS 142

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES++IWEVKTGKC + + AHS P+++VHF+ +GSLIVSGS+DG C+IWDA  G CL+T
Sbjct: 143 FDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRT 202

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           L D+ +P VSF KFSPNGK+IL  TLDSTLKLW+YS G+ LK YTGH N+KYCI ++FSV
Sbjct: 203 LADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSV 262

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T  K++VSGSEDN VY+W+LQ K ++Q+L GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 263 TGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTENIIASAALENDKTIK 322

Query: 307 VWVQD 311
           +W  D
Sbjct: 323 IWSSD 327

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/308 (60%), Positives = 234/308 (75%), Gaps = 2/308 (0%)

Query: 5   QTPPYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH 63
           +  P KP Y    TL  HS A+S VKFS +G  LAS++ D  +IIW A          GH
Sbjct: 21  EEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGH 80

Query: 64  SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV 123
           S  ISD+AWSSDS  + SASDD+TL++WD R+   CLKTL+GHSDFVFC +FNP SNLIV
Sbjct: 81  SLEISDVAWSSDSSRLVSASDDKTLKVWDMRSG-KCLKTLKGHSDFVFCCDFNPPSNLIV 139

Query: 124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183
           SGSFDES++IWEVKTGKC + + AHS P+++V+FN +GSLIVSGS+DG C+IWDA  G C
Sbjct: 140 SGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQC 199

Query: 184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243
           L+TL D+ +P VSF KFSPNGK+IL  TLD+TLKLW+YS G+ LK YTGH N+KYC+ ++
Sbjct: 200 LRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFAS 259

Query: 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303
           FSVT  K++VSGSEDN VY+W+LQ K ++Q+L GHTD VIS  CHPT+N IASA L+ D+
Sbjct: 260 FSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDK 319

Query: 304 TVRVWVQD 311
           T++VW  D
Sbjct: 320 TIKVWSSD 327

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224062481	314	hypothetical protein POPTRDRAFT_551164 [	0.993	0.987	0.858	1e-161
449458536	358	PREDICTED: WD repeat-containing protein	0.996	0.868	0.875	1e-160
255559420	318	WD-repeat protein, putative [Ricinus com	0.993	0.974	0.868	1e-160
449491576	335	PREDICTED: WD repeat-containing protein	0.996	0.928	0.875	1e-160
297814029	327	transducin family protein [Arabidopsis l	0.990	0.944	0.776	1e-146
357440717	316	WD repeat-containing protein [Medicago t	0.974	0.962	0.803	1e-145
15235470	333	transducin/WD40 domain-containing protei	0.990	0.927	0.763	1e-144
356500198	320	PREDICTED: WD repeat-containing protein	0.967	0.943	0.792	1e-141
356536065	319	PREDICTED: WD repeat-containing protein	0.990	0.968	0.770	1e-140
147783779	315	hypothetical protein VITISV_024139 [Viti	0.990	0.980	0.764	1e-137

>gi|224062481|ref|XP_002300840.1| hypothetical protein POPTRDRAFT_551164 [Populus trichocarpa] gi|222842566|gb|EEE80113.1| hypothetical protein POPTRDRAFT_551164 [Populus trichocarpa]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/310 (85%), Positives = 288/310 (92%)

Query: 2   AAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV 61
            + QTPPYKPYRH +TL  H RAVSCVKFSNDGTLLASASLDKT+I+WS+   +LVHR +
Sbjct: 5   GSQQTPPYKPYRHIRTLRGHERAVSCVKFSNDGTLLASASLDKTLILWSSPDFSLVHRLI 64

Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121
           GHSEG+SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK L+GHSDFVFCVNFNPQSNL
Sbjct: 65  GHSEGVSDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKILKGHSDFVFCVNFNPQSNL 124

Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
           IVSGSFDE+IRIWEVKTGKC RVIRAHSMPVTSVHFNRDGSLIVSGSHDG+CKIW+A  G
Sbjct: 125 IVSGSFDETIRIWEVKTGKCVRVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWEASSG 184

Query: 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCIT 241
            CLKTLIDDK+PAVSF KFSPNGKFILV TLDSTLKLWNYS GKFLKIY+GHTNK YCIT
Sbjct: 185 TCLKTLIDDKNPAVSFVKFSPNGKFILVATLDSTLKLWNYSTGKFLKIYSGHTNKVYCIT 244

Query: 242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
           STFSVTNGKYIVSGSED CVY+WDLQQKTM+QKL+GHTD+ ISVTCHPTENKIASAGLDG
Sbjct: 245 STFSVTNGKYIVSGSEDKCVYLWDLQQKTMVQKLEGHTDTAISVTCHPTENKIASAGLDG 304

Query: 302 DRTVRVWVQD 311
           D+++R+W QD
Sbjct: 305 DKSIRIWHQD 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458536|ref|XP_004147003.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/312 (87%), Positives = 290/312 (92%), Gaps = 1/312 (0%)

Query: 1   MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF 60
           MA+  T PYKPYRH KTLTAH+RAVSCVKFSNDGTLLASASLDKT+IIWS+SSL L HR 
Sbjct: 46  MASGGTQPYKPYRHLKTLTAHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRL 105

Query: 61  VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQS 119
           VGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR+P  +C+KTLRGHSDFVFCVNFNPQS
Sbjct: 106 VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQS 165

Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179
           NLIVSGSFDE+IRIWEVKTGKC  VIRAHSMPVTSVHFNRDGSLIVSGSHDG+CKIWDA 
Sbjct: 166 NLIVSGSFDETIRIWEVKTGKCLHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDAS 225

Query: 180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239
            G CLKTLIDDK PAVSFAKFSPNGKFILV TL+ TLKLWNYSAGKFLKIYTGH N+ +C
Sbjct: 226 SGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHC 285

Query: 240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL 299
           + STFSVTNGKYIVSGSED CVY+WDLQQKTMIQKL+GHTD VISV+CHPTENKIASAGL
Sbjct: 286 VVSTFSVTNGKYIVSGSEDKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGL 345

Query: 300 DGDRTVRVWVQD 311
           DGDR+VRVWVQD
Sbjct: 346 DGDRSVRVWVQD 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559420|ref|XP_002520730.1| WD-repeat protein, putative [Ricinus communis] gi|223540115|gb|EEF41692.1| WD-repeat protein, putative [Ricinus communis]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/311 (86%), Positives = 293/311 (94%), Gaps = 1/311 (0%)

Query: 2   AAAQTP-PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF 60
           AA+Q P PYKPYR  KTL AH RAVSCVKFSNDGTLLASASLDKT+IIWSAS+L+L+HR 
Sbjct: 7   AASQPPSPYKPYRLLKTLRAHERAVSCVKFSNDGTLLASASLDKTLIIWSASNLSLLHRL 66

Query: 61  VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120
            GHSEG+SDLAWSSDSHYICSASDDR+LRIWDAR PFDCLKTL+GHSD VFCVNFNPQSN
Sbjct: 67  FGHSEGVSDLAWSSDSHYICSASDDRSLRIWDARPPFDCLKTLKGHSDVVFCVNFNPQSN 126

Query: 121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180
           LIVSGSFDE+IRIWEVKTG+C  VIRAHSMPVTSVHFNRDGSLIVSGSHDG+CKIW+A  
Sbjct: 127 LIVSGSFDETIRIWEVKTGRCMSVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWEAST 186

Query: 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCI 240
           GA LKTLIDDKDPAVSFAKFSPNGKFILV TLDSTLKLWNYS+GKFLKIYTGHTN+ YC+
Sbjct: 187 GAWLKTLIDDKDPAVSFAKFSPNGKFILVATLDSTLKLWNYSSGKFLKIYTGHTNRVYCL 246

Query: 241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
           T+TFSVTNGKYIVSGSEDNCVY+WDLQQKTM+QKL+GH+D+VISVTCHPTENKIASAGLD
Sbjct: 247 TATFSVTNGKYIVSGSEDNCVYLWDLQQKTMVQKLEGHSDTVISVTCHPTENKIASAGLD 306

Query: 301 GDRTVRVWVQD 311
            DRT++VWVQD
Sbjct: 307 ADRTIKVWVQD 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491576|ref|XP_004158942.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/312 (87%), Positives = 290/312 (92%), Gaps = 1/312 (0%)

Query: 1   MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF 60
           MA+  T PYKPYRH KTLTAH+RAVSCVKFSNDGTLLASASLDKT+IIWS+SSL L HR 
Sbjct: 23  MASGGTQPYKPYRHLKTLTAHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRL 82

Query: 61  VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQS 119
           VGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR+P  +C+KTLRGHSDFVFCVNFNPQS
Sbjct: 83  VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQS 142

Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179
           NLIVSGSFDE+IRIWEVKTGKC  VIRAHSMPVTSVHFNRDGSLIVSGSHDG+CKIWDA 
Sbjct: 143 NLIVSGSFDETIRIWEVKTGKCLHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDAS 202

Query: 180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239
            G CLKTLIDDK PAVSFAKFSPNGKFILV TL+ TLKLWNYSAGKFLKIYTGH N+ +C
Sbjct: 203 SGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHC 262

Query: 240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL 299
           + STFSVTNGKYIVSGSED CVY+WDLQQKTMIQKL+GHTD VISV+CHPTENKIASAGL
Sbjct: 263 VVSTFSVTNGKYIVSGSEDKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGL 322

Query: 300 DGDRTVRVWVQD 311
           DGDR+VRVWVQD
Sbjct: 323 DGDRSVRVWVQD 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814029|ref|XP_002874898.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320735|gb|EFH51157.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 240/309 (77%), Positives = 278/309 (89%)

Query: 3   AAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           +   P YKPYRH KTL  H+ A+SCVKFSNDG LLASAS+DKT+I+WSA++ +L+HR+ G
Sbjct: 18  SGNIPMYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEG 77

Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           HS GISDLAWSSDSHY CSASDD TLRIWDAR+P++CLK LRGH++FVFCVNFNP SNLI
Sbjct: 78  HSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLI 137

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDE+IRIWEVKTGKC R+I+AHSMP++SVHFNRDGSLIVSGSHDG+CKIWDA EG 
Sbjct: 138 VSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSGSHDGSCKIWDAKEGT 197

Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDDK PAVSFAKFSPNGKFILV TLDSTLKL NY+ GKFLK+YTGHTNK +CITS
Sbjct: 198 CLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITS 257

Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVTNGKYIVSGSEDNCVY+WDLQQK ++Q+L+GHTD+VISV+CHP +N+IAS+G   D
Sbjct: 258 AFSVTNGKYIVSGSEDNCVYLWDLQQKNILQRLEGHTDAVISVSCHPVQNEIASSGNHLD 317

Query: 303 RTVRVWVQD 311
           +T+R+W QD
Sbjct: 318 KTIRIWKQD 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440717|ref|XP_003590636.1| WD repeat-containing protein [Medicago truncatula] gi|355479684|gb|AES60887.1| WD repeat-containing protein [Medicago truncatula] gi|388501300|gb|AFK38716.1| unknown [Medicago truncatula]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/305 (80%), Positives = 276/305 (90%), Gaps = 1/305 (0%)

Query: 7   PPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           PPYKPYRH KTLT H+RAVSCVKFSNDG LLASASLDKT+II+S+++L+L+HR  GHSEG
Sbjct: 12  PPYKPYRHHKTLTTHTRAVSCVKFSNDGNLLASASLDKTLIIYSSTTLSLLHRLTGHSEG 71

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           I+D+AWSSDSHYICSASDD+TLRIWDA T  DC+KTLRGH   VFCVNFNPQSN IVSGS
Sbjct: 72  INDIAWSSDSHYICSASDDKTLRIWDANTG-DCVKTLRGHGHNVFCVNFNPQSNYIVSGS 130

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDE++R+WEVKTGK   VI+AH+MPVTSV FNRDGSLIVSGSHDG+CKIWD   GA LKT
Sbjct: 131 FDETVRVWEVKTGKSVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIWDTNSGALLKT 190

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDDK PAVSFAKFSPNGKFILV TL+ TLKLWNY+AG+ LK+Y+GH N+ YC+TSTFSV
Sbjct: 191 LIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYAAGRSLKMYSGHVNRVYCLTSTFSV 250

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           TNG+YIVSGSED C+Y+WDLQQK MIQKL+GHTD+VISVTCHP ENKIASAGLDGDRTVR
Sbjct: 251 TNGRYIVSGSEDRCLYLWDLQQKNMIQKLEGHTDTVISVTCHPKENKIASAGLDGDRTVR 310

Query: 307 VWVQD 311
           +WVQD
Sbjct: 311 IWVQD 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235470|ref|NP_192182.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|16612252|gb|AAL27497.1|AF439825_1 AT4g02730/T5J8_2 [Arabidopsis thaliana] gi|4263521|gb|AAD15347.1| putative WD-repeat protein [Arabidopsis thaliana] gi|7269758|emb|CAB77758.1| putative WD-repeat protein [Arabidopsis thaliana] gi|21593699|gb|AAM65666.1| putative WD-repeat protein [Arabidopsis thaliana] gi|21928079|gb|AAM78068.1| AT4g02730/T5J8_2 [Arabidopsis thaliana] gi|332656821|gb|AEE82221.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/309 (76%), Positives = 276/309 (89%)

Query: 3   AAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           +   P YKPYRH KTL  H+ A+SCVKFSNDG LLASAS+DKT+I+WSA++ +L+HR+ G
Sbjct: 24  SGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEG 83

Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           HS GISDLAWSSDSHY CSASDD TLRIWDAR+P++CLK LRGH++FVFCVNFNP SNLI
Sbjct: 84  HSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLI 143

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDE+IRIWEVKTGKC R+I+AHSMP++SVHFNRDGSLIVS SHDG+CKIWDA EG 
Sbjct: 144 VSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGT 203

Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDDK PAVSFAKFSPNGKFILV TLDSTLKL NY+ GKFLK+YTGHTNK +CITS
Sbjct: 204 CLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITS 263

Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVTNGKYIVSGSEDNCVY+WDLQ + ++Q+L+GHTD+VISV+CHP +N+I+S+G   D
Sbjct: 264 AFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLD 323

Query: 303 RTVRVWVQD 311
           +T+R+W QD
Sbjct: 324 KTIRIWKQD 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500198|ref|XP_003518920.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/303 (79%), Positives = 266/303 (87%), Gaps = 1/303 (0%)

Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           +KPYRH KTL  H  AVSCVKFSNDGTLLASASLDKT+IIWS+++L L HR VGHSEGIS
Sbjct: 18  FKPYRHLKTLKDHENAVSCVKFSNDGTLLASASLDKTLIIWSSATLTLCHRLVGHSEGIS 77

Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           DLAWSSDSHYICSASDD TLRIWDA T  DC+K LRGH D VFCVNFNPQS+ IVSGSFD
Sbjct: 78  DLAWSSDSHYICSASDDHTLRIWDA-TGGDCVKILRGHDDVVFCVNFNPQSSYIVSGSFD 136

Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           E+I++W+VKTGKC   I+ H+MPVTSVH+NRDG+LI+S SHDG+CKIWD   G  LKTLI
Sbjct: 137 ETIKVWDVKTGKCVHTIKGHTMPVTSVHYNRDGTLIISASHDGSCKIWDTRTGNLLKTLI 196

Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
           +DK PAVSFAKFSPNGKFIL  TL+ TLKLWNY +GKFLKIY+GH N+ YCITSTFSVTN
Sbjct: 197 EDKAPAVSFAKFSPNGKFILAATLNDTLKLWNYGSGKFLKIYSGHVNRVYCITSTFSVTN 256

Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           G+YIVSGSED CVY+WDLQ K MIQKL+GHTD+VISVTCHPTENKIASAGL GDRTVRVW
Sbjct: 257 GRYIVSGSEDRCVYIWDLQAKNMIQKLEGHTDTVISVTCHPTENKIASAGLAGDRTVRVW 316

Query: 309 VQD 311
           VQD
Sbjct: 317 VQD 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536065|ref|XP_003536561.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/310 (77%), Positives = 267/310 (86%), Gaps = 1/310 (0%)

Query: 2   AAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV 61
              QT  +KPYRH KTLT H  AVSCVKFSNDGTLLASASLDKT+IIWS+++L L HR V
Sbjct: 10  GVTQTLGFKPYRHLKTLTDHENAVSCVKFSNDGTLLASASLDKTLIIWSSATLTLCHRLV 69

Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121
           GHSEGISDLAWSSDSHYICSASDDRTLRIWDA     C+K LRGH D VFCVNFNPQS+ 
Sbjct: 70  GHSEGISDLAWSSDSHYICSASDDRTLRIWDATVGGGCIKILRGHDDAVFCVNFNPQSSY 129

Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
           IVSGSFDE+I++W+VKTGKC   I+ H+MPVTSVH+NRDG+LI+S SHDG+CKIWD   G
Sbjct: 130 IVSGSFDETIKVWDVKTGKCVHTIKGHTMPVTSVHYNRDGNLIISASHDGSCKIWDTETG 189

Query: 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCIT 241
             LKTLI+DK PAVSFAKFSPNGK IL  TL+ TLKLWNY +GK LKIY+GH N+ YCIT
Sbjct: 190 NLLKTLIEDKAPAVSFAKFSPNGKLILAATLNDTLKLWNYGSGKCLKIYSGHVNRVYCIT 249

Query: 242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
           STFSVTNGKYIV GSED+CVY+WDLQQK ++QKL+GHTD+VISVTCHPTENKIASAGL G
Sbjct: 250 STFSVTNGKYIVGGSEDHCVYIWDLQQK-LVQKLEGHTDTVISVTCHPTENKIASAGLAG 308

Query: 302 DRTVRVWVQD 311
           DRTVRVWVQD
Sbjct: 309 DRTVRVWVQD 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783779|emb|CAN61446.1| hypothetical protein VITISV_024139 [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 266/310 (85%), Gaps = 1/310 (0%)

Query: 2   AAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV 61
             + + PY+PYR  +TL AH RAVSCVKFS+DGTLLASASLDKT+I+WS+ +L L  R V
Sbjct: 6   GGSNSLPYRPYRLLRTLAAHDRAVSCVKFSSDGTLLASASLDKTLIVWSSQTLTLKSRLV 65

Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121
           GHS GISDLAWSSDSHYICSASDD TLRIWDA++  +C+KTLRGH+D VFCVNFNPQSNL
Sbjct: 66  GHSGGISDLAWSSDSHYICSASDDLTLRIWDAQSA-ECVKTLRGHTDLVFCVNFNPQSNL 124

Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
           IVSGSFDE++RIW+VKTG+    I AHSMPVTSV+FNRDGSLIVSGSHDG+CKIW +  G
Sbjct: 125 IVSGSFDETVRIWDVKTGRPLHTIAAHSMPVTSVYFNRDGSLIVSGSHDGSCKIWASDTG 184

Query: 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCIT 241
           A LKTLI+D  PA+SFAKFSPNGK+ILV TLD TLKLWNYS GK LKIYTGH NK YCI 
Sbjct: 185 ALLKTLIEDNGPAISFAKFSPNGKYILVATLDDTLKLWNYSTGKSLKIYTGHVNKVYCIA 244

Query: 242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
           S FSVT GKYIVSGSED CVYVWDLQ K  +QKL+GHTD+VISV+CHP ENKIASAGLD 
Sbjct: 245 SAFSVTYGKYIVSGSEDKCVYVWDLQGKNPLQKLEGHTDTVISVSCHPNENKIASAGLDX 304

Query: 302 DRTVRVWVQD 311
           DRTVR+WVQD
Sbjct: 305 DRTVRIWVQD 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.990	0.927	0.763	4.1e-136
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.974	0.958	0.628	8.1e-108
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.980	0.993	0.642	3.5e-107
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.990	0.925	0.642	3.5e-107
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.971	0.907	0.645	7.2e-107
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.971	0.907	0.645	7.2e-107
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.971	0.907	0.645	7.2e-107
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.971	0.907	0.645	7.2e-107
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.971	0.907	0.642	6.5e-106
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.964	0.833	0.627	6.7e-104

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 236/309 (76%), Positives = 276/309 (89%)

Query:     3 AAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
             +   P YKPYRH KTL  H+ A+SCVKFSNDG LLASAS+DKT+I+WSA++ +L+HR+ G
Sbjct:    24 SGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEG 83

Query:    63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
             HS GISDLAWSSDSHY CSASDD TLRIWDAR+P++CLK LRGH++FVFCVNFNP SNLI
Sbjct:    84 HSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLI 143

Query:   123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
             VSGSFDE+IRIWEVKTGKC R+I+AHSMP++SVHFNRDGSLIVS SHDG+CKIWDA EG 
Sbjct:   144 VSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGT 203

Query:   183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
             CLKTLIDDK PAVSFAKFSPNGKFILV TLDSTLKL NY+ GKFLK+YTGHTNK +CITS
Sbjct:   204 CLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITS 263

Query:   243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
              FSVTNGKYIVSGSEDNCVY+WDLQ + ++Q+L+GHTD+VISV+CHP +N+I+S+G   D
Sbjct:   264 AFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLD 323

Query:   303 RTVRVWVQD 311
             +T+R+W QD
Sbjct:   324 KTIRIWKQD 332

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 196/312 (62%), Positives = 250/312 (80%)

Query:     6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL-----ALVHRF 60
             T  + PY H +TLT+H+RAVS VKFS+DG LLASAS DKT+  ++ +++       V  F
Sbjct:     8 TASFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEF 67

Query:    61 VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120
              GH  GISD+A+SSD+ +I SASDD+TL++WD  T    +KTL GH+++ FCVNFNPQSN
Sbjct:    68 TGHENGISDVAFSSDARFIVSASDDKTLKLWDVETG-SLIKTLIGHTNYAFCVNFNPQSN 126

Query:   121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180
             +IVSGSFDE++RIW+V TGKC +V+ AHS PVT+V FNRDGSLIVS S+DG C+IWD+G 
Sbjct:   127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query:   181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCI 240
             G C+KTLIDD++P VSF +FSPNGKFILVGTLD+TL+LWN S+ KFLK YTGH N +YCI
Sbjct:   187 GHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCI 246

Query:   241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
             +S FSVTNGK IVSGSEDNCV++W+L  K ++QKL+GHT++V++V CHPTEN IAS  LD
Sbjct:   247 SSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLD 306

Query:   301 GDRTVRVWVQDR 312
               +TVR+W Q +
Sbjct:   307 --KTVRIWTQKK 316

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 198/308 (64%), Positives = 236/308 (76%)

Query:     5 QTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH 63
             Q  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH
Sbjct:     1 QPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60

Query:    64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV 123
               GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIV
Sbjct:    61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIV 119

Query:   124 SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183
             SGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G C
Sbjct:   120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179

Query:   184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243
             LKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + 
Sbjct:   180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 239

Query:   244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303
             FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+
Sbjct:   240 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 299

Query:   304 TVRVWVQD 311
             T+++W  D
Sbjct:   300 TIKLWKSD 307

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 201/313 (64%), Positives = 240/313 (76%)

Query:     2 AAAQT-P-PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH 58
             AA Q+ P P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A       
Sbjct:    22 AATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 81

Query:    59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ 118
                GH  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQ
Sbjct:    82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQ 140

Query:   119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
             SNLIVSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD 
Sbjct:   141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query:   179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
               G CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KY
Sbjct:   201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260

Query:   239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
             CI + FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA 
Sbjct:   261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320

Query:   299 LDGDRTVRVWVQD 311
             L+ D+T+++W  D
Sbjct:   321 LENDKTIKLWKSD 333

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 197/305 (64%), Positives = 235/305 (77%)

Query:     8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
             P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct:    30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query:    67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
             ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct:    90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query:   127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
             FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct:   149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query:   187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
             LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct:   209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query:   247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct:   269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query:   307 VWVQD 311
             +W  D
Sbjct:   329 LWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 197/305 (64%), Positives = 235/305 (77%)

Query:     8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
             P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct:    30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query:    67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
             ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct:    90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query:   127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
             FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct:   149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query:   187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
             LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct:   209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query:   247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct:   269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query:   307 VWVQD 311
             +W  D
Sbjct:   329 LWKSD 333

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 197/305 (64%), Positives = 235/305 (77%)

Query:     8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
             P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct:    30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query:    67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
             ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct:    90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query:   127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
             FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct:   149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query:   187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
             LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct:   209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query:   247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct:   269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query:   307 VWVQD 311
             +W  D
Sbjct:   329 LWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 197/305 (64%), Positives = 235/305 (77%)

Query:     8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
             P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct:    30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query:    67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
             ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct:    90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query:   127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
             FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct:   149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query:   187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
             LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct:   209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268

Query:   247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct:   269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query:   307 VWVQD 311
             +W  D
Sbjct:   329 LWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 196/305 (64%), Positives = 234/305 (76%)

Query:     8 PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
             P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct:    30 PVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89

Query:    67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
             ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct:    90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148

Query:   127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
             FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct:   149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208

Query:   187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
             LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YT H N+KYCI + FSV
Sbjct:   209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKYCIFANFSV 268

Query:   247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct:   269 TGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328

Query:   307 VWVQD 311
             +W  D
Sbjct:   329 LWKSD 333

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 190/303 (62%), Positives = 231/303 (76%)

Query:    10 KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
             KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  GIS
Sbjct:    59 KPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 118

Query:    69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
             D+AWSSDS  + S SDD+TL++W+  T    LKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct:   119 DVAWSSDSRLLVSGSDDKTLKVWELSTG-KSLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 177

Query:   129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
             ES+RIW+V+TGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKTLI
Sbjct:   178 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 237

Query:   189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
             DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT 
Sbjct:   238 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 297

Query:   249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
             GK+IVSGSEDN VY+W+LQ K ++QKL GHTD+V+   CHPTEN IASA L+ D+T+++W
Sbjct:   298 GKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLW 357

Query:   309 VQD 311
               D
Sbjct:   358 KSD 360

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54KL5	WDR5_DICDI	No assigned EC number	0.5816	0.9711	0.9044	yes	no
Q9V3J8	WDS_DROME	No assigned EC number	0.6270	0.9647	0.8337	yes	no
Q5M786	WDR5_XENTR	No assigned EC number	0.6343	0.9839	0.9191	yes	no
Q17963	TG125_CAEEL	No assigned EC number	0.5433	0.9583	0.7952	yes	no
A8X8C6	TG125_CAEBR	No assigned EC number	0.5457	0.9775	0.8288	N/A	no
Q498M4	WDR5_RAT	No assigned EC number	0.6459	0.9711	0.9071	yes	no
P61964	WDR5_HUMAN	No assigned EC number	0.6459	0.9711	0.9071	yes	no
P61965	WDR5_MOUSE	No assigned EC number	0.6459	0.9711	0.9071	yes	no
Q5RE95	WDR5B_PONAB	No assigned EC number	0.6196	0.9711	0.9181	yes	no
Q2KIG2	WDR5_BOVIN	No assigned EC number	0.6459	0.9711	0.9071	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HMCA902	hypothetical protein (314 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XII.1531.1	hypothetical protein (314 aa)			•						0.483
	eugene3.56640001	annotation not avaliable (132 aa)			•						0.455
	grail3.0061013201	hypothetical protein (76 aa)			•						0.417

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-89
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-64
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-44
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-33
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-22
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-12
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-11
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	6e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	9e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
COG1506	620	COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  268 bits (688), Expect = 1e-89
 Identities = 118/293 (40%), Positives = 174/293 (59%), Gaps = 7/293 (2%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           +TL  H+  V+CV FS DG LLA+ S D T+ +W   +  L+    GH+  + D+A S+D
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62

Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
             Y+ S S D+T+R+WD  T  +C++TL GH+ +V  V F+P   ++ S S D++I++W+
Sbjct: 63  GTYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195
           V+TGKC   +R H+  V SV F+ DG+ + S S DGT K+WD   G C+ TL       V
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE-V 180

Query: 196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG 255
           +   FSP+G+ +L  + D T+KLW+ S GK L    GH N    +   FS  +G  + SG
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV--AFS-PDGYLLASG 237

Query: 256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           SED  + VWDL+    +Q L GHT+SV S+   P   ++AS   DG  T+R+W
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG--TIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  229 bits (585), Expect = 4e-74
 Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 5/251 (1%)

Query: 15  FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
            +TL  H+  V  V  S DGT LAS S DKT+ +W   +   V    GH+  +S +A+S 
Sbjct: 44  LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP 103

Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
           D   + S+S D+T+++WD  T   CL TLRGH+D+V  V F+P    + S S D +I++W
Sbjct: 104 DGRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
           +++TGKC   +  H+  V SV F+ DG  ++S S DGT K+WD   G CL TL   ++  
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG- 221

Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
           V+   FSP+G  +  G+ D T+++W+   G+ ++  +GHTN    +TS     +GK + S
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS---VTSLAWSPDGKRLAS 278

Query: 255 GSEDNCVYVWD 265
           GS D  + +WD
Sbjct: 279 GSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  202 bits (517), Expect = 7e-64
 Identities = 92/253 (36%), Positives = 141/253 (55%), Gaps = 7/253 (2%)

Query: 56  LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNF 115
           L     GH+ G++ +A+S D   + + S D T+++WD  T  + L+TL+GH+  V  V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAA 59

Query: 116 NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI 175
           +     + SGS D++IR+W+++TG+C R +  H+  V+SV F+ DG ++ S S D T K+
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235
           WD   G CL TL    D  V+   FSP+G F+   + D T+KLW+   GK +   TGHT 
Sbjct: 120 WDVETGKCLTTLRGHTDW-VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178

Query: 236 KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295
           +   +   FS  +G+ ++S S D  + +WDL     +  L GH + V SV   P    +A
Sbjct: 179 EVNSV--AFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235

Query: 296 SAGLDGDRTVRVW 308
           S   DG  T+RVW
Sbjct: 236 SGSEDG--TIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  156 bits (393), Expect = 6e-44
 Identities = 115/306 (37%), Positives = 168/306 (54%), Gaps = 12/306 (3%)

Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASAS-LDKTVIIWSASSLALVHRFVGHSEG 66
              P +  +TL  HS +V+ + FS DG LLAS S LD T+ +W   +   +    GH++ 
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200

Query: 67  ISDLAWSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG 125
           +S LA+S D    I S S D T+R+WD  T      TL GHSD V    F+P  +L+ SG
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASG 259

Query: 126 SFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
           S D +IR+W++++     R +  HS  V SV F+ DG L+ SGS DGT ++WD   G  L
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 185 KTL-IDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
            +L +   +  VS   FSP+G  ++ G + D T++LW+   GK LK   GH+N    + S
Sbjct: 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN----VLS 375

Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
                +G+ + SGS D  V +WDL   ++++ LDGHT  V S+   P    +AS   D  
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN- 434

Query: 303 RTVRVW 308
            T+R+W
Sbjct: 435 -TIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  155 bits (392), Expect = 9e-44
 Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 15/314 (4%)

Query: 5   QTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSA-SSLALVHRFVG- 62
            +    P      L  H  +++ + FS DG LL S S D T+ +W   +   L+    G 
Sbjct: 48  DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL 107

Query: 63  HSEGISDLAWSS---DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS 119
           H   +S LA SS   +S  + S+S D T+++WD  TP   ++TL GHS+ V  + F+P  
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 120 NLIVSGS-FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWD 177
            L+ SGS  D +I++W+++TGK    +  H+ PV+S+ F+ DG  LI SGS DGT ++WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNK 236
              G  L++ +         + FSP+G  +  G+ D T++LW+  +    L+  +GH++ 
Sbjct: 228 LSTGKLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286

Query: 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ--KLDGHTDSVISVTCHPTENKI 294
              +  +    +GK + SGS D  V +WDL+   ++    L GH   V S++  P  + +
Sbjct: 287 VLSVAFS---PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 295 ASAGLDGDRTVRVW 308
            S G D D T+R+W
Sbjct: 344 VSGGSD-DGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  144 bits (362), Expect = 2e-39
 Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 11/272 (4%)

Query: 10  KPYRHFKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVH-RFVGHSEGI 67
           +  +   TL  H+  VS + FS DG  L+AS S D T+ +W  S+  L+     GHS+  
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS- 244

Query: 68  SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
              ++S D   + S S D T+R+WD R+    L+TL GHS  V  V F+P   L+ SGS 
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304

Query: 128 DESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSG-SHDGTCKIWDAGEGACL 184
           D ++R+W+++TGK    +    H  PV+S+ F+ DGSL+VSG S DGT ++WD   G  L
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF 244
           KTL    +  V    FSP+G+ +  G+ D T++LW+ S G  L+   GHT++   +  + 
Sbjct: 365 KTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422

Query: 245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD 276
              +GK + SGS DN + +WDL+         
Sbjct: 423 ---DGKSLASGSSDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (359), Expect = 4e-39
 Identities = 108/295 (36%), Positives = 160/295 (54%), Gaps = 12/295 (4%)

Query: 21  HSRAVSCVKF-SNDGTLLASA--SLDKTVIIWSASSLA-LVHRFVGHSEGISDLAWSSDS 76
           H  +VS +   S DG  +  A  SLD TV +W  S+   L+    GHSE ++ LA+S D 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 77  HYICSASD-DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIW 134
             + S S  D T+++WD RT    L TL GH+D V  + F+P    LI SGS D +IR+W
Sbjct: 168 KLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Query: 135 EVKTGKCTR-VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
           ++ TGK  R  +  HS  V S  F+ DGSL+ SGS DGT ++WD    + L   +     
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253
           +V    FSP+GK +  G+ D T++LW+   GK L   T   ++    + +FS      + 
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
            GS+D  + +WDL+    ++ L+GH  +V+SV+  P    ++S   DG  TVR+W
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDG--TVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  134 bits (337), Expect = 6e-36
 Identities = 101/303 (33%), Positives = 157/303 (51%), Gaps = 20/303 (6%)

Query: 15  FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
               + +S ++  +  S  G LL +   D  V +   SSL       GH + I+ +A+S 
Sbjct: 20  ELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSP 75

Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF----VFCVNFNPQSNLIVSGSFDES 130
           D   + S S D T+++WD       +K+L G  D     +   + +  S L+ S S D +
Sbjct: 76  DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135

Query: 131 IRIWEVKT-GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTLI 188
           +++W++ T GK  R +  HS  VTS+ F+ DG L+ SGS  DGT K+WD   G  L TL 
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195

Query: 189 DDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSV 246
              DP VS   FSP+G  ++   + D T++LW+ S GK L+   +GH++      S    
Sbjct: 196 GHTDP-VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---- 250

Query: 247 TNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
            +G  + SGS D  + +WDL+   ++++ L GH+ SV+SV   P    +AS   DG  TV
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG--TV 308

Query: 306 RVW 308
           R+W
Sbjct: 309 RLW 311

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (309), Expect = 5e-33
 Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           +   TLT H+  V+ V FS DG  L S+S D T+ +W  S+   +    GH  G++ +A+
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227

Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
           S D + + S S+D T+R+WD RT  +C++TL GH++ V  + ++P    + SGS D +IR
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 133 IWE 135
           IW+
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 9e-22
 Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 5/188 (2%)

Query: 12  YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH--RFVGHSEGISD 69
               +TL+ HS +V  V FS DG LLAS S D TV +W   +  L+      GH   +S 
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 70  LAWSSD-SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           L++S D S  +   SDD T+R+WD RT    LKTL GHS+ V  V+F+P   ++ SGS D
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTD 391

Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
            ++R+W++ TG   R +  H+  VTS+ F+ DG  + SGS D T ++WD        +  
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451

Query: 189 DDKDPAVS 196
            D     S
Sbjct: 452 PDGKVLAS 459

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 26/265 (9%)

Query: 18  LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--------FVGHSEGISD 69
           L   S  V  + F  DG   A+A ++K + I+   S+    R            S+ +S 
Sbjct: 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK-LSG 537

Query: 70  LAWSSD-SHYICSASDDRTLRIWD-ARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGS 126
           + W+S     + S++ +  +++WD AR+    +  ++ H   V+ ++++     L+ SGS
Sbjct: 538 ICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGS 595

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLK 185
            D S+++W +  G     I+  +  +  V F  + G  +  GS D     +D        
Sbjct: 596 DDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 186 TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF------LKIYTGHTNKKYC 239
             +      VS+ +F  +   +   T D+TLKLW+ S          L  + GHTN K  
Sbjct: 655 CTMIGHSKTVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713

Query: 240 ITSTFSVTNGKYIVSGSEDNCVYVW 264
           +    SV++G YI +GSE N V+V+
Sbjct: 714 VG--LSVSDG-YIATGSETNEVFVY 735

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 32/197 (16%)

Query: 4   AQTPPYKPYRHFKTLTAH------SRAVSCVKFSND-------GTLLASASLDKTVIIWS 50
            Q  P +P RHF  +T        S  ++C    ND         L ++A L  T     
Sbjct: 9   TQGVPARPDRHFLNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKL 64

Query: 51  ASSLALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKT------- 102
           AS+  ++   +G    I D+A++  D   + +AS+D T+  W    P + L         
Sbjct: 65  ASNPPIL---LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG--IPEEGLTQNISDPIV 119

Query: 103 -LRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD 160
            L+GH+  V  V+F+P + N++ S   D  + +W+V+ GK   VI+ HS  +TS+ +N D
Sbjct: 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179

Query: 161 GSLIVSGSHDGTCKIWD 177
           GSL+ + S D    I D
Sbjct: 180 GSLLCTTSKDKKLNIID 196

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 8e-10
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
           +G+  + ++ H+ PVTSV F+ DG  + SGS DGT K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
           GK  R ++ H+ PVTSV F+ DG+L+ SGS DGT ++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 96  PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
             + LKTL+GH+  V  V F+P    + SGS D +I++W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 53 SLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
          S  L+    GH+  ++ +A+S D  Y+ S SDD T+++WD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
          L+    GH+  ++ +A+S D + + S SDD T+R+WD
Sbjct: 3  LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 97  FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
              L+TL+GH+  V  V F+P  NL+ SGS D ++R+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50
          +TL  H+  V+ V FS DG LLAS S D TV +W 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50
          KTL  H+  V+ V FS DG  LAS S D T+ +W 
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 19/128 (14%)

Query: 57  VHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDCLK-------TLRGHSD 108
           V +  GH+  I DL ++   S  + S S+D T+R+W+     + +K        L+GH  
Sbjct: 67  VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126

Query: 109 FVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVIRAHSMP--VTSVHFNRDGSLIV 165
            +  +++NP +  I+ S  FD  + IW+++  K    I   +MP  ++S+ +N  G+L+ 
Sbjct: 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKGNLL- 182

Query: 166 SGSHDGTC 173
                GTC
Sbjct: 183 ----SGTC 186

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 18  LTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
           L  H++ V  V F      +LASA  D  V +W       V     HS+ I+ L W+ D 
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 77  HYICSASDDRTLRIWDAR 94
             +C+ S D+ L I D R
Sbjct: 181 SLLCTTSKDKKLNIIDPR 198

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 34/302 (11%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           K L  +  A+S    S++ + +++ +      I  +     +  F+   EG+        
Sbjct: 411 KPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFL---EGL-------- 459

Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
               C       LR+       D L +    S+ V  + F+       +   ++ I+I+E
Sbjct: 460 ----CKYLSFSKLRVKADLKQGDLLNS----SNLVCAIGFDRDGEFFATAGVNKKIKIFE 511

Query: 136 ----VKTGKCTR---VIRAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTL 187
               +K G+      V  A    ++ + +N    S + S + +G  ++WD      +  +
Sbjct: 512 CESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM 571

Query: 188 IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247
            + +    S    S +   +  G+ D ++KLW+ + G  + I T  T    C    F   
Sbjct: 572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--VSIGTIKTKANICCVQ-FPSE 628

Query: 248 NGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           +G+ +  GS D+ VY +DL+  K  +  + GH+ +V  V    +   ++S+    D T++
Sbjct: 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS---TDNTLK 685

Query: 307 VW 308
           +W
Sbjct: 686 LW 687

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 272 IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           ++ L GHT  V SV   P  N +AS   DG  TVRVW
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDG--TVRVW 38

Length = 39

>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 46/248 (18%), Positives = 79/248 (31%), Gaps = 29/248 (11%)

Query: 18  LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
           L      VS +++S DG++LA  S      +     + +       + G+SD  WS D  
Sbjct: 55  LLTFGGGVSELRWSPDGSVLAFVS-TDGGRVAQLYLVDVGGLITKTAFGVSDARWSPDGD 113

Query: 78  YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137
            I             A    +      G            +  +   G   E   ++ V 
Sbjct: 114 RI-------------AFLTAEGASKRDGGDHLFV-----DRLPVWFDGRGGERSDLYVVD 155

Query: 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW------DAGEGACLKTLIDDK 191
                  +   ++ V S   + DG L+ S   D     W             L++L   +
Sbjct: 156 IESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGE 215

Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251
             ++S   F  +GK I +     T      + G F+ +  G   +     S+   T G +
Sbjct: 216 -GSISKLAFDADGKSIALL---GTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAW 271

Query: 252 IVSGSEDN 259
            V G  D 
Sbjct: 272 AVEGGLDG 279

Length = 620

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 272 IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           ++ L GHT  V SV   P    +AS   DG  T+++W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDG--TIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 19/138 (13%)

Query: 17  TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW----SASSL--ALVHRFVGHSEGISDL 70
           T+  HS+ VS V+F +  TL++S S D T+ +W    S S +    +H F+GH+   + +
Sbjct: 656 TMIGHSKTVSYVRFVDSSTLVSS-STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714

Query: 71  AWSSDSHYICSASDDRTLRIWDARTP-------FDCLKTLRG-----HSDFVFCVNFNPQ 118
             S    YI + S+   + ++    P       F  +  + G      S F+  V +  Q
Sbjct: 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774

Query: 119 SNLIVSGSFDESIRIWEV 136
           S+ +V+ +   +I+I E+
Sbjct: 775 SSTLVAANSTGNIKILEM 792

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 103 LRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIW----------EVKTGKCTRVIRAHSMP 151
           L+GH+  +  + FNP  S ++ SGS D +IR+W          E+K  +C  +++ H   
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC--ILKGHKKK 127

Query: 152 VTSVHFNRDGSLIV-SGSHDGTCKIWD 177
           ++ + +N     I+ S   D    IWD
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWD 154

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 24/144 (16%)

Query: 25  VSCVKFSND-GTLLASASLDKTVIIWSASSLAL-VHRFVGHSEGISDLAWSSDSHYICSA 82
           + CV+F ++ G  LA  S D  V  +   +  L +   +GHS+ +S + +  DS  + S+
Sbjct: 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS 678

Query: 83  SDDRTLRIWDA--------RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
           S D TL++WD          TP   L +  GH++    V  +     I +GS    + ++
Sbjct: 679 STDNTLKLWDLSMSISGINETP---LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Query: 135 EVKTGKCTRVIRAHSMPVTSVHFN 158
                      +A  MPV S  F 
Sbjct: 736 H----------KAFPMPVLSYKFK 749

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
           G+ LK   GHT     +   FS  +GKY+ SGS+D  + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVA--FS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
           GK L+   GHT     +   FS  +G  + SGS+D  V VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVA--FS-PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 28  VKFSN-DGTLLASASLDKTVIIW--------SASSLALVHRFVGHSEGISDLAW-SSDSH 77
           V F+  D   L +AS D T++ W           S  +VH   GH++ +  +++  S  +
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMN 139

Query: 78  YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137
            + SA  D  + +WD       ++ ++ HSD +  + +N   +L+ + S D+ + I + +
Sbjct: 140 VLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198

Query: 138 TGKCTRVIRAHS 149
            G     + AH+
Sbjct: 199 DGTIVSSVEAHA 210

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG1334	559	consensus WD40 repeat protein [General function pr	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG1334	559	consensus WD40 repeat protein [General function pr	99.54
KOG2315	566	consensus Predicted translation initiation factor	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.38
COG4946	668	Uncharacterized protein related to the periplasmic	99.38
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.36
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.3
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.22
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.22
KOG2315	566	consensus Predicted translation initiation factor	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.14
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.09
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.05
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.04
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.03
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.01
COG4946	668	Uncharacterized protein related to the periplasmic	99.01
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.97
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.96
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.86
KOG2695	425	consensus WD40 repeat protein [General function pr	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.68
KOG3621	726	consensus WD40 repeat-containing protein [General	98.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.63
KOG3621	726	consensus WD40 repeat-containing protein [General	98.59
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.59
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.4
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.34
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.23
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.2
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.17
PRK02888	635	nitrous-oxide reductase; Validated	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.16
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.14
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.08
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.97
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.91
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.9
COG3391	381	Uncharacterized conserved protein [Function unknow	97.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.88
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.75
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.74
KOG2444	238	consensus WD40 repeat protein [General function pr	97.73
PRK13616	591	lipoprotein LpqB; Provisional	97.73
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.69
PRK13616	591	lipoprotein LpqB; Provisional	97.68
PHA02713	557	hypothetical protein; Provisional	97.67
PHA02713	557	hypothetical protein; Provisional	97.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.64
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.55
KOG2395	644	consensus Protein involved in vacuole import and d	97.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.48
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.44
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.4
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.39
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.23
KOG2395	644	consensus Protein involved in vacuole import and d	97.23
KOG2444	238	consensus WD40 repeat protein [General function pr	97.21
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.1
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.1
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.05
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.96
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.92
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.89
PHA03098	534	kelch-like protein; Provisional	96.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.84
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.84
PHA03098	534	kelch-like protein; Provisional	96.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.71
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.63
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.57
PRK10115	686	protease 2; Provisional	96.48
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.25
PHA02790	480	Kelch-like protein; Provisional	96.21
PHA02790	480	Kelch-like protein; Provisional	96.1
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.08
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.95
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.84
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.8
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.68
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.41
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.25
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.18
PRK10115	686	protease 2; Provisional	94.98
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.86
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.78
PLN02193	470	nitrile-specifier protein	94.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.63
COG5167	776	VID27 Protein involved in vacuole import and degra	94.62
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.55
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.53
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.35
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.24
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.03
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.03
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.02
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.67
PLN02153	341	epithiospecifier protein	93.56
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.51
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.45
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.3
COG5167	776	VID27 Protein involved in vacuole import and degra	93.17
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.95
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.86
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.5
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.71
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.26
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.11
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.07
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.02
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.03
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.63
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.32
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.27
COG4590	733	ABC-type uncharacterized transport system, permeas	89.18
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.18
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.13
KOG2247	615	consensus WD40 repeat-containing protein [General	88.94
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.83
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.55
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.04
PRK13684	334	Ycf48-like protein; Provisional	87.78
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.76
PLN02153	341	epithiospecifier protein	87.73
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.67
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.51
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.32
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.96
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.47
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.45
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.02
PLN02193	470	nitrile-specifier protein	86.0
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.87
COG4590	733	ABC-type uncharacterized transport system, permeas	85.49
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.66
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.48
KOG2247	615	consensus WD40 repeat-containing protein [General	84.36
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.74
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.45
COG5276	370	Uncharacterized conserved protein [Function unknow	83.4
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.11
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	82.29
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.29
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	81.51
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	81.5
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.73

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-55  Score=340.33  Aligned_cols=291  Identities=35%  Similarity=0.663  Sum_probs=260.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ++-..+.+|..+|.|++|+|+|..|+||+.|.++|+||..+..+....++|...|.+++|+|||+.||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEec-----CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNP-----QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      ..++.+....+.+|...|.+++|.|     ...+|++++.||.|+|||+..++++..+.+|..+|+|+.|--+| ++++|
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence            9998888889999999999999976     56789999999999999999999999999999999999997554 89999


Q ss_pred             eCCCeEEEEeCCCCceeeEcc-----------------------------------------------------------
Q 021459          168 SHDGTCKIWDAGEGACLKTLI-----------------------------------------------------------  188 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~-----------------------------------------------------------  188 (312)
                      +.|++|++|+...|.+.+.+.                                                           
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999865543221110                                                           


Q ss_pred             -------------------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          189 -------------------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       189 -------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                                         ..+...+..+.|+||++++|+++.|+.|++||-++|+.+..+.+|....+.+.   +..+.
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva---wsaDs  421 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA---WSADS  421 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE---eccCc
Confidence                               01122345578999999999999999999999999999999999998877664   34678


Q ss_pred             cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ++|++|+.|.++++||++++++...+.||.+.|.++.|+|||+.+++++  .|..+++|.
T Consensus       422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg--kdkv~~lw~  479 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG--KDKVLRLWR  479 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC--CceEEEeec
Confidence            9999999999999999999999999999999999999999999999999  567999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-52  Score=330.20  Aligned_cols=285  Identities=29%  Similarity=0.528  Sum_probs=263.9

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEEeCCCC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      .+-+.+|..+.||++++.|+||+.+|.++||+..+...+..+.+|...|.++.|+|.  +..+++|+.||++++|+..+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            456789999999999999999999999999999999999999999999999999996  569999999999999999874


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW  176 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (312)
                       ..+..+.+|...|..++|+|+|++|+|++.|.+-++||+++++.+...++|...|.+++|.|||.++++|+.|..-++|
T Consensus       252 -~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  252 -TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             -cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence             5688899999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS  256 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (312)
                      |++++.++..+.+ +...+..+.|+|+|..||+|+.|++++|||++.-+.+.++..|.+.+..+  .+.+..|.+|+|++
T Consensus       331 DlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V--k~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  331 DLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV--KYSPQEGYFLVTAS  407 (459)
T ss_pred             ecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe--EecccCCeEEEEcc
Confidence            9999999987766 55667788999999999999999999999999988888888888765444  44545789999999


Q ss_pred             cCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       257 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .|+++++|...+..+++.+.||++.|.+++.+|+++.++++|.|  +++++|-
T Consensus       408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeecc
Confidence            99999999999999999999999999999999999999999965  7999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-47  Score=289.36  Aligned_cols=293  Identities=27%  Similarity=0.490  Sum_probs=264.8

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .+.-++|.+|.+.|.++.|++|.++|++++.||.+.|||.-+....+.+.-....|...+|+|.|+++|+|+.|+...||
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            45568999999999999999999999999999999999999988888888888899999999999999999999999999


Q ss_pred             eCCCC--c---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEE
Q 021459           92 DARTP--F---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIV  165 (312)
Q Consensus        92 d~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  165 (312)
                      ++.+.  .   +..+.+.+|.+.+.|+.|-+| +.++|++.|.++-+||+++++.+..+.+|...|.++.++| +++.|+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            98753  1   334568899999999999874 6789999999999999999999999999999999999999 999999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      +|+.|+..++||+|.+.+..++.+ ++..+..++|.|+|.-+++|+.|++.++||++....+..++.. .....+....+
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~F  281 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAF  281 (343)
T ss_pred             ecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEE
Confidence            999999999999999999888865 4567889999999999999999999999999999999888743 33344555555


Q ss_pred             ccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ...|++|.+|..|..+.+||.-.++.+..+.+|+..|.+|..+|+|..++++|+|  .++|||.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD--s~lriW~  343 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD--STLRIWA  343 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh--HheeecC
Confidence            5679999999999999999999999999999999999999999999999999987  5999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-46  Score=320.83  Aligned_cols=298  Identities=47%  Similarity=0.832  Sum_probs=271.5

Q ss_pred             ceeeeccc-ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           14 HFKTLTAH-SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        14 ~~~~~~~h-~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ...++..| ...|+++.|+|+|+.+++++.++.+++|+....+  .+..+.+|...|.+++|+|+++++++++.|+++++
T Consensus       150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            35556554 8899999999999999999999999999997777  67777899999999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ||+......++.+++|...|.+++|+|+++.+++|+.|++|++||++++++...+..|..+|++++|+++++++++++.|
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            99966567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCc--eeeEcccCCCC-cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          171 GTCKIWDAGEGA--CLKTLIDDKDP-AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       171 ~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +.|++||+.++.  +...+...... .+..++|+|++.++++++.|+.+++||+..+.....+.+|.....|+......+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST  389 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence            999999999998  44555555444 688999999999999999999999999999999999988877655665555567


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCC-ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH-TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+.++++|+.|+.|++||+.++..+..+.+| ...+..++++|..+.+++++.++|..+++|..+
T Consensus       390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            8999999999999999999999999999999 889999999999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7e-44  Score=263.18  Aligned_cols=270  Identities=22%  Similarity=0.456  Sum_probs=236.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeeeecccccEEEE
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTLRGHSDFVFCV  113 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~  113 (312)
                      -+|+++|.|.+||+|...+|.+...++-..+.|+.++..|+++.||+++ ...|++||+++... .+.++.+|...|.++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            4799999999999999999999998887778899999999999999886 45799999987654 678899999999999


Q ss_pred             EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC
Q 021459          114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP  193 (312)
Q Consensus       114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (312)
                      .|..+|+.+++|++||+++|||+++..+.+.++ |..+|+++..+|+...|++|..+|.|++||+++..+...+..+.+.
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            999999999999999999999999977666664 5689999999999999999999999999999999888888888888


Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE------EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF------LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      .+..+...|||.+|+.+...|..++|++-+...      +..++.|...   +..+...|++++||+++.|.+++||+..
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEECCCCcEEEeecCCceEEEEecC
Confidence            899999999999999999999999999866432      3335555543   3334455889999999999999999998


Q ss_pred             ch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          268 QK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       268 ~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +. .....+++|+.+++..+|+.++.+|+|||.|  +++|+|++.
T Consensus       246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--~~~rlW~~~  288 (311)
T KOG0315|consen  246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--HTARLWDLS  288 (311)
T ss_pred             CceeeEEEeecCCceEEeeeeccCccEEEecCCC--Cceeecccc
Confidence            77 4456688999999999999999999999965  699999873

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.5e-44  Score=260.56  Aligned_cols=289  Identities=32%  Similarity=0.561  Sum_probs=258.1

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      |.+..+.+..|.++|.+++|+-+|++.+|++.|++|++|+...+.+++.+.+|...|..++.+.|...+++|+.|+.+.+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--eEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ||++++ +..+.+.+|.+.|..++|+.+...+++|+.|.++++||.++.  ++++.+......|.++..+  +..+++|+
T Consensus        86 wDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   86 WDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999996 678889999999999999999999999999999999999764  5566666666778888774  56899999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      .||+++.||++.|+.....+   ..++.++.++++++.+++++.|+++++.|-.+|+.++.+.+|.+..+.+.++.. ..
T Consensus       163 ~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qs  238 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QS  238 (307)
T ss_pred             cCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-cc
Confidence            99999999999988765443   456888999999999999999999999999999999999999998888887765 45


Q ss_pred             CcEEEEeecCCeEEEEECCchheeecccCCccc-eEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDS-VISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ..++++|++||.|.+||+.+...+..++.+... |.++++||....|++++.   ..+..|.
T Consensus       239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~---~~~~~~~  297 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG---HGDLFWY  297 (307)
T ss_pred             ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC---Cceecee
Confidence            678999999999999999999999999988877 899999999988888863   3566664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-44  Score=283.91  Aligned_cols=296  Identities=29%  Similarity=0.490  Sum_probs=252.5

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      |.+..+.+..|++.|--+.||++|++||+++.|.+..+|.+..   .++.+++.+|..+|.-+.|+||.++|++|+.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            4556678899999999999999999999999999999997654   4567889999999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEE
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  166 (312)
                      +.+||+.++........++...+.+++|.||+..+++|+.|+.|..||+... .....+... -.|.+++.++||+++++
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEE
Confidence            9999999864333233345578899999999999999999999999998744 333333322 34899999999999999


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ...|..|++++..+..... +. .....+.....+.+++++++--.+..+++||+.....++.+.+|....+.+.++|-.
T Consensus       372 v~~d~~i~l~~~e~~~dr~-li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRG-LI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             Eecccceeeechhhhhhhc-cc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            9999999999976543332 22 233457788899999999999999999999999888888999999888999999988


Q ss_pred             cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEeec
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+..++++|++|+.|+||+..++.++..+.||...|++|+|+|.. ..+|+||.|  ++||||-++
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--gtIRIWg~~  513 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--GTIRIWGPS  513 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--CeEEEecCC
Confidence            888999999999999999999999999999999999999999965 567888744  699999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-45  Score=288.68  Aligned_cols=249  Identities=31%  Similarity=0.544  Sum_probs=228.6

Q ss_pred             eeceeeecccccceEEEEECCC--CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      .+...+|.+|+..|.++.|+|.  +..+|||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-+
T Consensus       207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR  286 (459)
T ss_pred             cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence            3667889999999999999996  56899999999999999999899999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      +||+++..+ +...+||...|.+++|+|||.+++||+.|..=+|||+++++++..+.+|..+|.+++|+|+|..+++|+.
T Consensus       287 lWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~  365 (459)
T KOG0272|consen  287 LWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS  365 (459)
T ss_pred             hcccccchh-hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence            999998654 4456799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      |++++|||++....+..+. .+...++.++++| .|.+|++++.|+++++|.-++..+++.+.+|..++.++..   .++
T Consensus       366 Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di---s~d  441 (459)
T KOG0272|consen  366 DNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI---SPD  441 (459)
T ss_pred             CCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe---ccC
Confidence            9999999999887776664 4556788889998 7889999999999999999999999999999998665544   478


Q ss_pred             CcEEEEeecCCeEEEEE
Q 021459          249 GKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd  265 (312)
                      +.++++++.|.++++|.
T Consensus       442 ~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CceEEEeccCceeeecc
Confidence            99999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-42  Score=258.85  Aligned_cols=290  Identities=29%  Similarity=0.445  Sum_probs=239.5

Q ss_pred             eceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCC-----CcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSAS-----SLALVHRFVGHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      ....++.+|++.|+.++..+. .+.+++++.|.++.+|++.     .+..+.++.||...|..+..+++|++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            345678999999999999886 4588999999999999765     3667889999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-cCcCeEEEEEccC--CCE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-HSMPVTSVHFNRD--GSL  163 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~  163 (312)
                      .+++||+.++ +..+.+.+|...|.+++|++|+..+++|+.|.+|++|++..+........ +...|.|+.|+|+  ..+
T Consensus        86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             eEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            9999999987 66788899999999999999999999999999999999886654433332 2678999999998  679


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST  243 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
                      +++++.|+++++||+++-+....+.+ +...+..+.++|||..+++|+.||.+.+||++.++.+..+... .   .+...
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~---~v~sl  239 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D---IVNSL  239 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C---eEeeE
Confidence            99999999999999998877777665 4556788899999999999999999999999999987665432 2   24444


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccC----C-----ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG----H-----TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+.|+.-.|+.+ .+-.|+|||+.++..+..+..    .     .-...+++|+++|+.|.++-.  |+.||+|++-
T Consensus       240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t--d~~irv~qv~  313 (315)
T KOG0279|consen  240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT--DNVIRVWQVA  313 (315)
T ss_pred             EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec--CCcEEEEEee
Confidence            444655455544 455599999998877766532    1     234677899999999998874  4689999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-43  Score=274.84  Aligned_cols=290  Identities=31%  Similarity=0.557  Sum_probs=260.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ....+.+|..+|+.+.|+|+..++++++.|++|++||..++++...+++|..+|.+++|+..|++|++++.|-.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            34457789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .+-.++++.+.+|...|.++.|-|.|+++++++.|.+|+.||+.++-++.++.+|...|..+..+.||.++++++.|.++
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence            87677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECC---------------CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCcee
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSP---------------NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      ++|-+.++++...+. .+.-.+.+++|.|               .++++.+++.|++|++||+.++.++..+.+|.+...
T Consensus       260 ~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  260 RVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            999998886544332 2333444444443               235899999999999999999999999999987543


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .   ....|.|++|+++.+|+++++||+++.+++..+..|+.-|++++|+.+..++++|+.|  .++++|.
T Consensus       339 ~---~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd--qt~KvwE  404 (406)
T KOG0295|consen  339 G---VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD--QTVKVWE  404 (406)
T ss_pred             e---eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc--ceeeeee
Confidence            3   3345789999999999999999999999999999999999999999999999999976  6899995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.2e-45  Score=285.78  Aligned_cols=284  Identities=27%  Similarity=0.545  Sum_probs=246.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      +.+|..+.|.|+|+.|++|+..|.+.+|+.....-...++.|.++|.++.|++++.++++|+.+|.|++|+...  ..++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence            56899999999999999999999999999865544344578999999999999999999999999999998764  2344


Q ss_pred             eeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          102 TLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       102 ~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ...+| ...|.+++|+|....+++++.||+|+|||....+....+.+|.-.|+++.|+|...++++++.|..|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            45554 48999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      +.++.++.. +...+..+.|.|++++|++++.|..+++||++.-+.+..+.+|.....++  .+.+-...+|++|+.||.
T Consensus       254 g~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~--~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  254 GSCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL--TWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             cchhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee--ccccccccceeeccCCCc
Confidence            999988765 45567788999999999999999999999999777788888887765444  455567789999999999


Q ss_pred             EEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          261 VYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       261 i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      |..|.+...+++..+ .+|...|++++|||-|..|++|+  .|.++|+|.-.|
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~r  381 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRNR  381 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecC--CCcceeeeccCC
Confidence            999999855554444 47999999999999999999988  557999997554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-44  Score=289.15  Aligned_cols=295  Identities=27%  Similarity=0.547  Sum_probs=258.6

Q ss_pred             CceeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      -|-+...++.+|++.|+++.|.| .+.+|++++.|+.|+||++.. +.++..+.+|..+|.+++|+++|..+++++.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            35567788999999999999999 899999999999999999887 7889999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +++||++++ +++..+. ......|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-.+|..+.|-++|+.+++
T Consensus       282 lKlwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  282 LKLWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence            999999997 4444443 23567899999998 89999999999999999999988888889999999999999999999


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---EEEEEEccCCceeEEEEE
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---FLKIYTGHTNKKYCITST  243 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~  243 (312)
                      .+.|+.+++|+.+.+..++.+.....-.+.++..+|+++++++-+.|+.|.+|.....-   ..+.+.+|....+.+.+.
T Consensus       360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            99999999999988776665544444446677899999999999999999999864432   235677887777777776


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEe
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~  309 (312)
                      |+ ++|++|++|..||.+.+||.++-.++.++++|.+++..+.|||.. ..+|++|.||  .|++|+
T Consensus       440 fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G--~Ikiwd  503 (503)
T KOG0282|consen  440 FS-PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG--LIKIWD  503 (503)
T ss_pred             Ec-CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc--eeEecC
Confidence            65 789999999999999999999999999999999999999999976 5799999775  899996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.9e-43  Score=269.42  Aligned_cols=296  Identities=24%  Similarity=0.538  Sum_probs=261.2

Q ss_pred             CCC-CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459            7 PPY-KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus         7 ~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      |+| -|++..+.+.+|.+=|.|+++.|...+++||+.|++|+|||+.++++...+.+|-..|..+++++-..||++++.|
T Consensus       135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC
Confidence            444 3678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      +.|+.||++. .+.++.+.||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...++
T Consensus       215 k~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  215 KQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             CeeEEEechh-hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            9999999987 477888999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      +|+.|++|++||++.++....+. ++...+..++.+|....+|+++.| .|+-|++..+..+..+.+|......+..   
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~---  368 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV---  368 (460)
T ss_pred             EecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee---
Confidence            99999999999999998776654 455668888899999999988877 6999999999988888877765444432   


Q ss_pred             ccCCcEEEEeecCCeEEEEECCchheeeccc-----C---CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----G---HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                       ....++++|+++|.+.+||.+++...+..+     |   .+..|.+.+|...+..|+++..|  .+|++|..|
T Consensus       369 -nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead--KtIk~~keD  439 (460)
T KOG0285|consen  369 -NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD--KTIKMYKED  439 (460)
T ss_pred             -ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC--cceEEEecc
Confidence             345689999999999999998876655442     1   24578999999999999999955  699999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.3e-42  Score=259.13  Aligned_cols=293  Identities=29%  Similarity=0.524  Sum_probs=249.4

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC-CcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS-SLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ..++..+.+|++.|..++|+|+|..|||||.|..|.+|+.. .-+-...+++|.++|..+.|.+|+..|++++.|++++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            45556778999999999999999999999999999999954 33445667899999999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ||++++ +..+..++|.+.+.++.-..-| ..+.+++.|+++++||+++...++.++. +.+++++.|..++..+.+|+-
T Consensus       117 wD~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  117 WDAETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             Eecccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc
Confidence            999996 6678889999999988733333 4677889999999999998887776643 457899999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC----CcEEEEEEccCC--ceeEEEEE
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA----GKFLKIYTGHTN--KKYCITST  243 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~--~~~~~~~~  243 (312)
                      |+.|++||++.+.....+.++.+ .+..+..+++|.++++-+.|.++++||.+.    .+++++++++..  ....+.+ 
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c-  272 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC-  272 (338)
T ss_pred             cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee-
Confidence            99999999999988887766554 467778999999999999999999999864    456788877543  2333443 


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+.+++..+.+|+.|..+++||......+..++||.+.|++++|||..+.+.+++.|  .+|.+-++
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd--k~i~lgei  337 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD--KTIYLGEI  337 (338)
T ss_pred             eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC--ceeEeecc
Confidence            455789999999999999999999999999999999999999999999999999965  57877554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-40  Score=246.93  Aligned_cols=289  Identities=29%  Similarity=0.484  Sum_probs=233.2

Q ss_pred             eeceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCC---cceEEEe-eeccCCEEEEEEccCCCeEEEEcCCC
Q 021459           12 YRHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASS---LALVHRF-VGHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      +..++++++|++.+-.++|+|. |..|||+|.|+.||+|+...   ..+...+ .+|+..|.+++|+|.|++|+++|.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4456788999999999999998 89999999999999999884   2333222 47999999999999999999999999


Q ss_pred             eEEEEeCC-CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC---eEEEEeeecCcCeEEEEEccCCC
Q 021459           87 TLRIWDAR-TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        87 ~v~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
                      ++.||.-. ...+++..++||...|.|++|+++|++|++++.|++|-+|.+..+   .+...++.|...|..+.|+|...
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            99999654 345788999999999999999999999999999999999998744   56778899999999999999999


Q ss_pred             EEEEeeCCCeEEEEeCC-C--CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          163 LIVSGSHDGTCKIWDAG-E--GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      +|++++.|++|++|+-. .  -.+..++.+ +...+..+.|++.|..|++++.|++++||-+...-.    ..|....+.
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~  238 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYD  238 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEe
Confidence            99999999999999765 2  234555543 444688889999999999999999999998652211    112233333


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEECCch------hee-ecccCCccceEEEEEcCC-CceEEEeeecCCeeEEEEeec
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQK------TMI-QKLDGHTDSVISVTCHPT-ENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~-~~~~~h~~~v~~l~~~p~-~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +.   ..  ...|++++.|+.|++|.....      +++ ..-..|...|++|+|.|. .++|+++|.|  +.|++|.+.
T Consensus       239 v~---W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--G~v~~W~l~  311 (312)
T KOG0645|consen  239 VP---WD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--GIVNFWELE  311 (312)
T ss_pred             ee---ec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--ceEEEEEec
Confidence            32   11  458999999999999976532      112 233568899999999995 6788888865  699999875


Q ss_pred             C
Q 021459          312 R  312 (312)
Q Consensus       312 ~  312 (312)
                      +
T Consensus       312 ~  312 (312)
T KOG0645|consen  312 I  312 (312)
T ss_pred             C
Confidence            3

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-42  Score=270.62  Aligned_cols=248  Identities=32%  Similarity=0.627  Sum_probs=215.3

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                      ..+.+|.++|.++.|+|+|..|++|+.|.++++||+.+. .+..+.++|...|.|++|+||++.+++|+.||+|.+||.+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            456789999999999999999999999999999999874 5678899999999999999999999999999999999999


Q ss_pred             CCeEE-EEeeecCcCeEEEEEcc-----CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          138 TGKCT-RVIRAHSMPVTSVHFNR-----DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       138 ~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      +|+.+ ..+.+|...|++++|.|     ..++|++++.||.++|||+..++++..+.+ +...+++++|.-+| ++++|+
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrwGG~g-liySgS  265 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRWGGEG-LIYSGS  265 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEEcCCc-eEEecC
Confidence            88765 57889999999999976     567999999999999999999988887755 55678899887654 899999


Q ss_pred             cCCeEEEEEcCCCcEEEEEEccCCceeEEEEE---------EE------------------------ccCCcEEEEeecC
Q 021459          212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITST---------FS------------------------VTNGKYIVSGSED  258 (312)
Q Consensus       212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------~~------------------------~~~~~~l~~~~~d  258 (312)
                      .|++|++|+...|.+.+.+.+|....+.+...         |.                        ...++.|++|++|
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            99999999999999888888887655444322         10                        1124579999999


Q ss_pred             CeEEEEECCc-hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          259 NCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       259 g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .++.+|+... .+++.++.+|+.-|+.+.|+||+.++|++|+|  .+||+|+-
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD--kSVkLW~g  396 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD--KSVKLWDG  396 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc--cceeeeeC
Confidence            9999999864 45788899999999999999999999999988  49999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.9e-41  Score=260.45  Aligned_cols=290  Identities=19%  Similarity=0.392  Sum_probs=244.3

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ..+|..|+++|.+++.+|+.++++|||.|..-.+|+..++.....+.+|++.|+++.|+.+|.+||+|..+|.|++|+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      ++..... +...-..+.-+.|+|.+..|++|+.||.+-+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|+
T Consensus       137 tg~~~~~-~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  137 TGGEQWK-LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             cCceEEE-eecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            8755433 333445677899999999999999999999999999888889999999999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCC---------------------CC--------------------------------cEEEEEEC
Q 021459          175 IWDAGEGACLKTLIDDK---------------------DP--------------------------------AVSFAKFS  201 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~---------------------~~--------------------------------~~~~~~~~  201 (312)
                      +||+.+++.+..+....                     +.                                .+..+.++
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s  295 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS  295 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence            99999987765543110                     00                                01112233


Q ss_pred             CCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccc
Q 021459          202 PNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDS  281 (312)
Q Consensus       202 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~  281 (312)
                      ..-.+.|+|+.||+|.|||+...+..+.+. |...  .+...|. + ..+|++++.||.|+.||.+++++...+.||+..
T Consensus       296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~--V~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~  370 (399)
T KOG0296|consen  296 SKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG--VTKLKWL-N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG  370 (399)
T ss_pred             cccchhhcccccceEEEEecccchhheecc-CCCc--eEEEEEc-C-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence            334567889999999999998777666554 3333  2333333 3 679999999999999999999999999999999


Q ss_pred             eEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          282 VISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       282 v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      |.+++++|+.++++|+|  +|++.++|.+.|
T Consensus       371 Il~f~ls~~~~~vvT~s--~D~~a~VF~v~~  399 (399)
T KOG0296|consen  371 ILDFALSPQKRLVVTVS--DDNTALVFEVPN  399 (399)
T ss_pred             eeEEEEcCCCcEEEEec--CCCeEEEEecCC
Confidence            99999999999999999  557899998653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-41  Score=250.61  Aligned_cols=250  Identities=30%  Similarity=0.574  Sum_probs=214.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+.+.||+..|+.+..++||++.++++.|+++|+||+.+++....+.+|...|.+++|++|.+.+++|+.|+++++|++
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      ............+.+.|.|++|+|.  ..++++++.|++|++||+++.+....+.+|...++.++++|||.++++|+.||
T Consensus       135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg  214 (315)
T KOG0279|consen  135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG  214 (315)
T ss_pred             cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence            7643222222234789999999997  67899999999999999999998889999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-------CCceeEEEEEE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-------TNKKYCITSTF  244 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~  244 (312)
                      .+.+||+++++.+..+  +....+..++|+|+..+|+.+. +..|+|||+.++..+..+...       .....|+...+
T Consensus       215 ~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw  291 (315)
T KOG0279|consen  215 EAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW  291 (315)
T ss_pred             eEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence            9999999999887665  3456788899999977666654 456999999988776544321       22346666655


Q ss_pred             EccCCcEEEEeecCCeEEEEECC
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      + .+|..|+.|-.|+.|++|.+.
T Consensus       292 s-~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  292 S-ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             c-CCCcEEEeeecCCcEEEEEee
Confidence            4 679999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.3e-39  Score=265.48  Aligned_cols=287  Identities=40%  Similarity=0.742  Sum_probs=249.6

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      +++.+|.++|++++|+|++++|++++.||.+++|+..+.+....+..|...+..+.|+|+++++++++.++.+++||+..
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            46778999999999999999999999999999999998888888888999999999999999999999999999999986


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      . +.+..+..|...+.++.|+++++++++++.++.|.+||+++++....+..|...+.++.|+|++.++++++.++.+++
T Consensus        83 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          83 G-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             c-cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            4 445667788889999999999888888888999999999988888888888889999999999989888888999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      ||+++++....+. .+...+..+.++|+++.+++++.++.|++||++.++.+..+..+......   ....+++.+++++
T Consensus       162 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~  237 (289)
T cd00200         162 WDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLLASG  237 (289)
T ss_pred             EEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE---EEEcCCCcEEEEE
Confidence            9998877666554 34446778889999999999999999999999988887777666554333   3334567888888


Q ss_pred             ecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +.||.|++||+.+......+..|...+.+++|+|+++.|++++.|  +.+++|+
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD--GTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC--CeEEecC
Confidence            889999999999888888888999999999999999999999965  5899995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-41  Score=286.26  Aligned_cols=287  Identities=29%  Similarity=0.555  Sum_probs=242.4

Q ss_pred             CCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459            7 PPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus         7 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      ++..|-.++.++..-...++|..|++|+.+||.|-.|-.|++|.+...++. .++.       ..+   -..+=+.+.|-
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~-------~~~---l~~~d~~sad~  431 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKD-------ASD---LSNIDTESADV  431 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccc-------hhh---hccccccccch
Confidence            334455667777777889999999999999999999999999998865432 2221       111   11122334444


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      .+.+.|.... ...+.+.||.++|..++|+|+.++|++++.|+++++|.+.+..+...+++|..||+.+.|+|.|-+|++
T Consensus       432 ~~~~~D~~~~-~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  432 DVDMLDDDSS-GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFAT  510 (707)
T ss_pred             hhhhccccCC-ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEe
Confidence            4666666554 335568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ++.|++-++|.....+..+.+.+ +-..+.++.|+|+..++++|+.|.+|++||..+|..++++.+|.....++   ...
T Consensus       511 as~D~tArLWs~d~~~PlRifag-hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al---~~S  586 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKPLRIFAG-HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL---AFS  586 (707)
T ss_pred             cCCCceeeeeecccCCchhhhcc-cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE---EEc
Confidence            99999999999888777766654 45668888999999999999999999999999999999999998875444   444


Q ss_pred             cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +.|++|++|++||.|.+||+.++.++..+.+|.+.|.+|.|+.+|..||++|  +|++|++||+.
T Consensus       587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg--~DnsV~lWD~~  649 (707)
T KOG0263|consen  587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG--ADNSVRLWDLT  649 (707)
T ss_pred             CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC--CCCeEEEEEch
Confidence            7899999999999999999999999999999999999999999999999999  66899999873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.3e-39  Score=259.96  Aligned_cols=295  Identities=25%  Similarity=0.424  Sum_probs=239.6

Q ss_pred             CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee---eccCCEEEEEEccCCCeEEEEcCCC
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      .|+++-.+++.|.+-|+|++|+|||.++||++.||++.+||-.+++.+..+.   +|++.|..++|+||++.+++++.|.
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk  257 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK  257 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence            4567777889999999999999999999999999999999999999998887   8999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE
Q 021459           87 TLRIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (312)
                      ++++||+.+. .+++++.-..   +.-..+-|-  ...|++.+.+|+|.+++......+..+.+|...|+++..+|++++
T Consensus       258 t~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  258 TIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             eEEEEEeecc-ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence            9999999875 4555443211   222233343  568999999999999999998888999999999999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCCcee-----------eEcccC------------------------------------------
Q 021459          164 IVSGSHDGTCKIWDAGEGACL-----------KTLIDD------------------------------------------  190 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~------------------------------------------  190 (312)
                      |++|+.||.|.-||..++..-           ..+...                                          
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            999999999999997654321           000000                                          


Q ss_pred             C---------------------------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE--EEEEccCCceeEEE
Q 021459          191 K---------------------------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL--KIYTGHTNKKYCIT  241 (312)
Q Consensus       191 ~---------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~  241 (312)
                      .                           ......++++|++..+++|+.|+.|++|.+..++..  .....|..+.   +
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i---T  491 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI---T  491 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCc---e
Confidence            0                           001123568999999999999999999999876532  2344566554   3


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      .....|++.+||+|...+.+.+||..+.+... .+.-|+..|++|+|+|++..+||||.|  .+|.||.++|
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--t~Viiysv~k  561 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--TNVIIYSVKK  561 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--ceEEEEEccC
Confidence            44556899999999999999999998876633 334499999999999999999999976  7999999876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-38  Score=234.68  Aligned_cols=270  Identities=24%  Similarity=0.484  Sum_probs=225.7

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      .+.++++..+..|+.|...|+++.||+++. ..||+||+.+.+  ++..+.+|+..|.++.|..+|+.+++|++||+++|
T Consensus        31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI  109 (311)
T KOG0315|consen   31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI  109 (311)
T ss_pred             eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence            556777888889999999999999999877 589999998765  58889999999999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEEEEeeC
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ||++.. .+.+ ...|..+|.++..+|+...|++|..+|.|++||+.+..+...+. ....++.++...|||.+++.+..
T Consensus       110 WdlR~~-~~qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  110 WDLRSL-SCQR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             EeccCc-ccch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence            999873 4433 44577999999999999999999999999999999887665543 34567999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEc-----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEE
Q 021459          170 DGTCKIWDAGEGACLKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITST  243 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~  243 (312)
                      .|.+.+|++...+....+     +..+...+..+.+||++++|++++.|.+++||+.++- +....+++|..-  ...+.
T Consensus       188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW--vWdc~  265 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW--VWDCA  265 (311)
T ss_pred             CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce--EEeee
Confidence            999999998765432222     2234555667789999999999999999999998776 334556666543  34444


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  288 (312)
                      |+ .++++|+||+.|+.+++|++..++.+...++|.....|++.+
T Consensus       266 FS-~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  266 FS-ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ec-cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            44 679999999999999999999999999999999988888764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-38  Score=253.10  Aligned_cols=278  Identities=28%  Similarity=0.512  Sum_probs=240.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      ++.|++|+|+.+|.+||+|+.||.+++|+. ++.++..+..|+++|.++.|+..|++|++++.|+++.+||..++ ...+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQ  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEE
Confidence            468999999999999999999999999985 46677788899999999999999999999999999999998775 4556


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (312)
                      .+.-|..+...+.|-. ...+++++.|+.|+++.+....+..++.+|..+|.++.|.|.+.+|++++.|++++||.....
T Consensus       313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence            6677877767788855 357899999999999999988889999999999999999999999999999999999998887


Q ss_pred             ceeeEcccCCCCcEEEEEECCCC---------CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNG---------KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      .....+..+ ...+..+.|+|.|         ..+++++.|++|++||...+.++..+..|..+.+.+.   +.++++++
T Consensus       392 ~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva---fS~~g~yl  467 (524)
T KOG0273|consen  392 NSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA---FSPNGRYL  467 (524)
T ss_pred             cchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE---ecCCCcEE
Confidence            776666543 4446667788864         4789999999999999999999999999999876654   34889999


Q ss_pred             EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      |+|+.||.|.+|+.++++.++.+.+ .+.|..|.|+..|.+|..+-.||  .+.+-+
T Consensus       468 AsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~--~vcvld  521 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG--SVCVLD  521 (524)
T ss_pred             EecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC--CceEEE
Confidence            9999999999999999999988875 55699999999999988877665  455544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-39  Score=239.13  Aligned_cols=287  Identities=24%  Similarity=0.364  Sum_probs=235.2

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      .+++|+.+++.++|+.+|.+|++++.|.++.||-..+++.+..+.+|+++|+++..+-+.+.|++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999999899999999999999999999999999999999999999999997


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeec-----CCcEEEEEcC-------CCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-----DESIRIWEVK-------TGKCTRVIRAHSMPVTSVHFNRDGSLI  164 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
                      . ++..++ -..+|..+.|++++++++.+..     .+.|.++|++       +.++...+..+...++.+-|.|-++++
T Consensus        85 k-~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 K-QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             c-EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            4 454544 4568999999999998887654     3679999997       445566677778889999999999999


Q ss_pred             EEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      ++|..||.|..||.++++........+...+..++++++..++++++.|.+-++||.++-+.++.+.....    +....
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P----vN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP----VNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc----cccee
Confidence            99999999999999998776665556677889999999999999999999999999999998888865432    22222


Q ss_pred             EccCCcEEEEeecCCeE--------------EEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          245 SVTNGKYIVSGSEDNCV--------------YVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i--------------~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..|..++++.|+.....              ++|++-..+.+..+++|-++|++|+|||+|+.+++||.||  .||+..+
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG--~VR~h~F  316 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG--YVRLHHF  316 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc--eEEEEEe
Confidence            23444555554432222              2233333355677889999999999999999999999775  6666554


Q ss_pred             c
Q 021459          311 D  311 (312)
Q Consensus       311 ~  311 (312)
                      |
T Consensus       317 d  317 (327)
T KOG0643|consen  317 D  317 (327)
T ss_pred             c
Confidence            3

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-37  Score=261.72  Aligned_cols=298  Identities=22%  Similarity=0.480  Sum_probs=247.9

Q ss_pred             CCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459            8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus         8 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      .|.|+..-+++.+|.+.|+++.|+.|.++|++|+.|-++++|.+...+-  ...+.+|...|...-|..+...+.+.+.|
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd  210 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD  210 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence            4778888899999999999999999999999999999999999887654  56678999999999999999999999999


Q ss_pred             CeEEEEeCCC-----------------------Cce-----e---e----------------------------------
Q 021459           86 RTLRIWDART-----------------------PFD-----C---L----------------------------------  100 (312)
Q Consensus        86 ~~v~~wd~~~-----------------------~~~-----~---~----------------------------------  100 (312)
                      |.+.+|....                       +.+     .   .                                  
T Consensus       211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~  290 (893)
T KOG0291|consen  211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG  290 (893)
T ss_pred             ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence            9999996541                       000     0   0                                  


Q ss_pred             ----------eeeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459          101 ----------KTLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus       101 ----------~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                                ..+.-....|..++|+..|..++.|+.. |.+-+|+..+...+...++|...+.+++++|||+++++|+.
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence                      0000001123445555556777766655 67888888888888888899999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      ||.|++||..++.+..++. ++...++.+.|+.+|+.+++.+.||+|+.||+...+..+++........  .+....+.|
T Consensus       371 DgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf--scvavD~sG  447 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF--SCVAVDPSG  447 (893)
T ss_pred             CCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee--eEEEEcCCC
Confidence            9999999999999999885 4567788999999999999999999999999999999999887655432  223344668


Q ss_pred             cEEEEeecCC-eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          250 KYIVSGSEDN-CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       250 ~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +++..|+.|. .|.+|++++++++..+.||+++|.+++|+|++..|+++|+|  .|||+|++
T Consensus       448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~i  507 (893)
T KOG0291|consen  448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDI  507 (893)
T ss_pred             CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEe
Confidence            8888888776 49999999999999999999999999999999999999977  69999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-38  Score=254.63  Aligned_cols=289  Identities=28%  Similarity=0.481  Sum_probs=245.3

Q ss_pred             eeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCc------c--eEEEe--ee----ccCCEEEEEEccCCCeE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSL------A--LVHRF--VG----HSEGISDLAWSSDSHYI   79 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~------~--~~~~~--~~----~~~~v~~~~~~~~~~~l   79 (312)
                      ++.+. |+.+|.+.+|+|... .+++++.|-..++|++...      +  +.+.+  -+    ....|++++|+.+|..|
T Consensus       172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            34444 999999999999776 8999999999999988641      1  01111  01    23579999999999999


Q ss_pred             EEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459           80 CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        80 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
                      ++|+.||.+++|+...  ..+.++..|.++|.++.|+..|+++++++-|+++.+||..+++..+.+..|..+...+.|-.
T Consensus       251 atG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             EEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence            9999999999999864  34667888999999999999999999999999999999999999999999998878889975


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      + ..|++++.|+.|+++-+.......++.+ +...+..+.|.|.+.+|++++.|++++||..........+..|....+.
T Consensus       329 ~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  329 N-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT  406 (524)
T ss_pred             C-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence            4 4689999999999999998888888887 5567889999999999999999999999998887777778888776554


Q ss_pred             EEEEE------EccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          240 ITSTF------SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       240 ~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +....      .+..+..+++++.|++|++||+..+.++..+..|+.+|.+|+|+|+++++|+|+.||  .|.||..
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--~V~iws~  481 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--CVHIWST  481 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--eeEeccc
Confidence            43211      112356799999999999999999999999999999999999999999999999875  7999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.2e-38  Score=262.87  Aligned_cols=282  Identities=24%  Similarity=0.484  Sum_probs=252.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-CeEEEEeCCCCceee
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-RTLRIWDARTPFDCL  100 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~wd~~~~~~~~  100 (312)
                      ...|++.+|++..+.|++|-.+|...+|.+....+++.+.-....|..++|+..|+.||.|+.. |.+.+|+.+.. ..+
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYV  343 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYV  343 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-cee
Confidence            3789999999999999999999999999999999999988778899999999999999998765 79999998764 345


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      -..++|...+.+++++|||.++++|+.||.|++||..++-|..++..|...|+.+.|+..|+.+++.+-||+|+.||+..
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCC-eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN  259 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  259 (312)
                      .+..+++.........+++.+|.|..+.+|+.|. .|++|++++|+.+.++.+|.++..++..   .+.+..|++|+-|.
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f---~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF---SPDGSLLASGSWDK  500 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE---ccccCeEEeccccc
Confidence            9999888777667788889999999999998886 6999999999999999999998665532   36788999999999


Q ss_pred             eEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          260 CVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       260 ~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +|++||+-.. ..+.+++ +...++.++|+|+|..|++++.||  +|-+|+.
T Consensus       501 TVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldg--qItf~d~  549 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDG--QITFFDI  549 (893)
T ss_pred             eEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecc--eEEEEEh
Confidence            9999999654 3344444 667899999999999999999886  7889986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.7e-37  Score=281.74  Aligned_cols=283  Identities=24%  Similarity=0.445  Sum_probs=226.9

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----c----eEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeE
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----A----LVHRFVGHSEGISDLAWSSD-SHYICSASDDRTL   88 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v   88 (312)
                      +..|...|.+++|+|++++||+|+.|+.|++|+....    .    ....+. +...|.+++|++. +.+|++++.|+.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4458999999999999999999999999999997532    1    112222 3467899999874 7899999999999


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc-cCCCEEEE
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN-RDGSLIVS  166 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  166 (312)
                      ++||+.+. +.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+++++.+..+..+ ..+.++.|+ +++.++++
T Consensus       558 ~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        558 QVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence            99999875 55677889999999999997 7889999999999999999999888777654 578899995 57899999


Q ss_pred             eeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC------cEEEEEEccCCceeE
Q 021459          167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG------KFLKIYTGHTNKKYC  239 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~  239 (312)
                      |+.|+.|++||+++... ...+. .+...+..+.|. ++.+|++++.|+.|++||++.+      ..+..+.+|.....+
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            99999999999987653 33333 455667888886 6789999999999999999743      456677777665444


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEECCchheee-------------cccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ-------------KLDGHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      +   ...+++.+|++|+.||.|.+|+......+.             ....|...|.+++|+|++..|++++.|  ++|+
T Consensus       714 v---~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--G~I~  788 (793)
T PLN00181        714 V---GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--GNIK  788 (793)
T ss_pred             E---EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--CcEE
Confidence            3   334668899999999999999976432221             113355679999999999999999955  5899


Q ss_pred             EEee
Q 021459          307 VWVQ  310 (312)
Q Consensus       307 iw~~  310 (312)
                      ||++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.2e-39  Score=271.03  Aligned_cols=209  Identities=33%  Similarity=0.595  Sum_probs=197.3

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+++.+|.++|...+|+|+.++|++++.|+++|+|.+.+...+-.+++|..+|..+.|+|.|-++||++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            34568999999999999999999999999999999999999998899999999999999999999999999999999988


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .. ...++.+.+|-..|.|+.|+|+.+++++||.|.+|++||+.+|..++.|.+|..+|.+++|+|+|++|++|+.|+.|
T Consensus       523 d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  523 DH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             cc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            76 45678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      .+||+.++..+..+.++ ...+..+.|+.+|..||+|+.|.+|++||+..-
T Consensus       602 ~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999988888776 777889999999999999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-38  Score=258.44  Aligned_cols=289  Identities=25%  Similarity=0.428  Sum_probs=253.7

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+++..|...|.++.|+|-...++++-.+|.+.|||.++..++..+.-...+|.+..|-+..+++++|++|+.|++|+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34567779999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCC
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDG  171 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  171 (312)
                      ++. +.++.+.+|++.|+|++.+|...++++++.|-+|++||-+.+ .+.+++++|..-|.+++|.| |.+.|++++-|+
T Consensus        85 nt~-ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   85 NTG-EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ccc-eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            885 568899999999999999999999999999999999999866 56778999999999999999 668999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      +|++|.+.+.....++.+ +...+.++.+-+.  ..+|++|+.|.+++|||+++..++.++.+|.....   ..+..|.-
T Consensus       164 TVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs---~v~fhp~l  239 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS---FVFFHPEL  239 (794)
T ss_pred             cEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce---EEEecCCC
Confidence            999999999888888765 4455677776554  46999999999999999999999999999988744   34555777


Q ss_pred             cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      .++++|++||+++||+..+-++...+.-.-+.|+|++-++..+.++.|...|..+|++
T Consensus       240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l  297 (794)
T KOG0276|consen  240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL  297 (794)
T ss_pred             cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence            8999999999999999988777777766667899999999988888777666555544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-36  Score=229.90  Aligned_cols=293  Identities=23%  Similarity=0.420  Sum_probs=244.3

Q ss_pred             CCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC--CC
Q 021459            9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD--DR   86 (312)
Q Consensus         9 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~   86 (312)
                      |+|.+.++   .-...|+++.|+++|..+++++.|..+++||..+++.+..+..++.++..++|....+.++.++.  |.
T Consensus         4 ~~~ak~f~---~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~   80 (311)
T KOG1446|consen    4 FRPAKVFR---ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD   80 (311)
T ss_pred             cccccccc---cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence            44444333   36778999999999999999999999999999999999999999999999999887777776666  78


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +|+..++.+ .+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+.....  ..++|.|+|-++|+
T Consensus        81 tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   81 TIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFAL  157 (311)
T ss_pred             ceEEEEeec-CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEE
Confidence            999999987 478999999999999999999999999999999999999998887766644333  35689999999999


Q ss_pred             eeCCCeEEEEeCCCCc--eeeEc--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          167 GSHDGTCKIWDAGEGA--CLKTL--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      +.....|++||+|.-.  ....+  ..........+.|+|||++++.++..+.+++.|.-.|.....+..+......-..
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence            9988899999998631  12222  1123455777899999999999999999999999999988888877665422233


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +...|+++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|....+++++    ..+-+|-++
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~  303 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD  303 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC----ceEEEEecc
Confidence            44458999999999999999999999999988888 789999999999988888765    478888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-36  Score=245.08  Aligned_cols=288  Identities=23%  Similarity=0.425  Sum_probs=246.0

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCC----CeE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDD----RTL   88 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v   88 (312)
                      ...+..|..+++-.+|||.|.++|+|...|+||||+....+  +...++.-.++|.+|+|+.+++.|++.++-    |.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            34567899999999999999999999999999999987643  344566678899999999999988877543    467


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      .+||..+.   +..+.||...|.++.|-|... .+++|+.|++|.+|+-..-+....++.|..-|.++.|+|||+.|++.
T Consensus       132 F~~DSG~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~  208 (603)
T KOG0318|consen  132 FLWDSGNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA  208 (603)
T ss_pred             EEecCCCc---cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence            88887553   667889999999999988654 69999999999999977777777888899999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEccc--CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-ceeEEEEEE
Q 021459          168 SHDGTCKIWDAGEGACLKTLID--DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-KKYCITSTF  244 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~  244 (312)
                      +.||++.+||-.+++.+..+..  .+...+..+.|+||+..+++++.|.+++|||..+.+.++.+..... ....+.+.+
T Consensus       209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW  288 (603)
T KOG0318|consen  209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW  288 (603)
T ss_pred             cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence            9999999999999998877652  3566788899999999999999999999999999998888764433 223344433


Q ss_pred             EccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .   ...|++.+.+|.|.+++......+..+.||...|.+|+.+|++.+|.++++||  .|.-|+.
T Consensus       289 q---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG--~I~~W~~  349 (603)
T KOG0318|consen  289 Q---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG--HINSWDS  349 (603)
T ss_pred             e---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc--eEEEEec
Confidence            3   56899999999999999998888999999999999999999999999999875  8888876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-39  Score=247.91  Aligned_cols=287  Identities=28%  Similarity=0.521  Sum_probs=243.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--------eeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--------FVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      +.+..+.|..|||||++|++|+.||-|.||++.++++...        +.-+..+|.+++|+.|...|++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4567789999999999999999999999999998875433        34577899999999999999999999999999


Q ss_pred             eCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           92 DARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        92 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      .++++ .+++.+. +|...|.|+.|+.|+..+++++.|.++++.-+++|++++.+++|...|+...|.++|..+++++.|
T Consensus       291 ri~tG-~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETG-QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecc-hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99986 5666654 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccC-CCCcEE-EEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          171 GTCKIWDAGEGACLKTLIDD-KDPAVS-FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      |+|++|+..+..++.++... .+..+. .+-+..+...++++...++|++-+++ |..++.+.......-....+...|.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence            99999999998887766432 223333 33455566788999999999999874 5666666543322222223344578


Q ss_pred             CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |+++.+.++|+.++.|...++.+...+.-|+..|..++-||..+.|++-+.|  +.+++|.+
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED--gllKLWkp  508 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED--GLLKLWKP  508 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc--chhhhcCC
Confidence            9999999999999999999999999999999999999999999999998855  58999963

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-39  Score=250.55  Aligned_cols=270  Identities=31%  Similarity=0.551  Sum_probs=230.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      ..+.|.|+.+  |...+++|..|.+|+|||..+...+..+.||++.|.|+.|  +.+.+++|+.|.+|++||.+++ +++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg-e~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG-EPL  270 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC-chh
Confidence            4678999987  4567999999999999999999999999999999999888  5669999999999999999986 678


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe---EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK---CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      +++-+|.+.|..+.|+.  .++++++.|.++.+||+.+..   +.+.+.+|..+|+.+.|+  .+++++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence            88889999999999975  689999999999999997654   334677899999999984  56999999999999999


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      +.+.+.++.+.++. ..+.++  -..++++++|+.|.+|++||...|.+++.+++|.+-..|+..     +.+.+++|+.
T Consensus       347 ~st~efvRtl~gHk-RGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-----d~krIVSGaY  418 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHK-RGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----DNKRIVSGAY  418 (499)
T ss_pred             ccceeeehhhhccc-ccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-----cCceeeeccc
Confidence            99999998876554 334443  457899999999999999999999999999999887766643     4678999999


Q ss_pred             CCeEEEEECCchhe---------eecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          258 DNCVYVWDLQQKTM---------IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       258 dg~i~iwd~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ||+|++||+.....         +..+..|++.|..+.|  |.-++++++  .|.+|.||+++
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss--HddtILiWdFl  477 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS--HDDTILIWDFL  477 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEecc--CCCeEEEEEcC
Confidence            99999999975432         3345678999999999  667888888  45699999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-37  Score=261.11  Aligned_cols=292  Identities=24%  Similarity=0.407  Sum_probs=249.5

Q ss_pred             eeceeeecccccceEEEEE-CCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKF-SNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~-s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      .+..+.+-|..+.|..++| .|+.+.||.+++.+.+|+|+..+.... -+.+|++.|.++....+|.+|++|+.|+++++
T Consensus       313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil  391 (775)
T KOG0319|consen  313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL  391 (775)
T ss_pred             cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence            3445567788889999987 588899999999999999988887765 78999999999997678899999999999999


Q ss_pred             EeCCCC---ceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-----E----EEeeecCcCeEEEEE
Q 021459           91 WDARTP---FDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-----T----RVIRAHSMPVTSVHF  157 (312)
Q Consensus        91 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-----~----~~~~~~~~~v~~~~~  157 (312)
                      |.+++.   ..++....+|...|.+++++..+ ..|+++|.|.++++|++...+.     .    .....|...|+++++
T Consensus       392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            977432   22345567899999999997644 5899999999999999975211     1    123568899999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                      +|+.+++++|+.|.+.++|++.+......+.+ +...+.++.|+|..+.+++++.|++|+||.+.+..+++++.+|....
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV  550 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV  550 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence            99999999999999999999998877777655 45668889999999999999999999999999999999999998764


Q ss_pred             eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..   +.+..+++.|++++.||.|++|++++.++...+.+|++.|++++.+|....++|||  +|+.|.+|.-
T Consensus       551 lr---a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg--~Dg~i~~wkD  618 (775)
T KOG0319|consen  551 LR---ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG--GDGRIIFWKD  618 (775)
T ss_pred             Ee---eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC--CCeEEEEeec
Confidence            32   23346799999999999999999999999999999999999999999999999999  5578999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1e-38  Score=236.19  Aligned_cols=283  Identities=26%  Similarity=0.429  Sum_probs=245.0

Q ss_pred             eecccccceEEEEECC---CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           17 TLTAHSRAVSCVKFSN---DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +-.+|+.+|..++|||   +|-+|++++.|+.-.+-+-.++..+..+.+|+++|++...+.+....++++.|=+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4468999999999985   8889999999999999999999999999999999999999988888999999999999998


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      .++.+ +..+ .|...|.+++|+.|.+.|++|+.+..+++||++..+ ....+.+|...|..+-|....+.+++.+.|++
T Consensus        89 ~tgde-lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   89 VTGDE-LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhhh-hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            87644 3333 477889999999999999999999999999998654 35577889999999999999999999999999


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      |++||.+++..+.++..  ...+..+..+++|++|.++. -+.|++||..+-..++.+...    +.+......|+..++
T Consensus       167 VRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P----~nV~SASL~P~k~~f  239 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP----CNVESASLHPKKEFF  239 (334)
T ss_pred             eEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc----cccccccccCCCceE
Confidence            99999999998887754  44577788999999877664 568999999888877766533    334545555777899


Q ss_pred             EEeecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++|++|+.++.||..+++.+..+ ++|.++|.||.|+|+|...++||.|  ++||||+.
T Consensus       240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt  296 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQT  296 (334)
T ss_pred             EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC--ceEEEEEe
Confidence            99999999999999999888885 8999999999999999999999965  59999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-37  Score=264.16  Aligned_cols=288  Identities=28%  Similarity=0.495  Sum_probs=249.6

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ++..+..|-.++|+|....++++--+|.|++||...+.++.++..|.++|..++|+|+..++++|++|-.|++|+..+ .
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r   83 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R   83 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence            344567889999999999999999999999999999999999999999999999999999999999999999999877 5


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      +++.++.||.+.|..+.|++.-.+++++|.|-+|++|+..+++++..+.+|...|.|..|+|...+++++|-|.+|++||
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC----------------------------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--EE
Q 021459          178 AGEG----------------------------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--FL  227 (312)
Q Consensus       178 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~  227 (312)
                      +..-                            ..++.+...++..+..++|+|.-..+++|+.|..|++|.+...+  .+
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv  243 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV  243 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence            6421                            01233344566677888999999999999999999999886544  24


Q ss_pred             EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      .++.+|.+...++   .+.+..+++++.++|+.|++||+...+.++.++-..+.-+.++-||..+.+++|- |  .-+.+
T Consensus       244 DtcrgH~nnVssv---lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-D--sGm~V  317 (1202)
T KOG0292|consen  244 DTCRGHYNNVSSV---LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-D--SGMIV  317 (1202)
T ss_pred             hhhhcccCCcceE---EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-C--CceEE
Confidence            5667787765544   3446778999999999999999999999999887777889999999998888653 3  34566


Q ss_pred             EeecC
Q 021459          308 WVQDR  312 (312)
Q Consensus       308 w~~~~  312 (312)
                      +..+|
T Consensus       318 FkleR  322 (1202)
T KOG0292|consen  318 FKLER  322 (1202)
T ss_pred             EEEcc
Confidence            66654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7e-37  Score=256.68  Aligned_cols=293  Identities=26%  Similarity=0.493  Sum_probs=237.9

Q ss_pred             ceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEEE
Q 021459           14 HFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLRI   90 (312)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~   90 (312)
                      ..+.+.. |++||..++|+|.+.++++||.|+.++|||+..+...+.+++|++.|.++.|+|+-.  .|++|..|+.+++
T Consensus        96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v  175 (775)
T KOG0319|consen   96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV  175 (775)
T ss_pred             HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence            3444555 999999999999999999999999999999999999999999999999999999754  6899999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE----------------------------
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT----------------------------  142 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----------------------------  142 (312)
                      ||++....++..+..|.+.|.++.+.+|+..+++++.|..+.+||+.+.+..                            
T Consensus       176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T  255 (775)
T KOG0319|consen  176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT  255 (775)
T ss_pred             EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence            9998766667778889999999999998888888888888888875321000                            


Q ss_pred             --------------------------------------------------------------------------------
Q 021459          143 --------------------------------------------------------------------------------  142 (312)
Q Consensus       143 --------------------------------------------------------------------------------  142 (312)
                                                                                                      
T Consensus       256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e  335 (775)
T KOG0319|consen  256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE  335 (775)
T ss_pred             ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence                                                                                            


Q ss_pred             -----------------------EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE-------------
Q 021459          143 -----------------------RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT-------------  186 (312)
Q Consensus       143 -----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------  186 (312)
                                             ..+.+|...|.++....+|.+|++|+.|.++++|.+.++.....             
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence                                   01233444455555334566788888888888885532210000             


Q ss_pred             ------------------------------------------cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          187 ------------------------------------------LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       187 ------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                                                                ....++..+.+++++|+.+++++|+.|++.++|++.+.
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence                                                      00113345667889999999999999999999999999


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      ....++.+|....+++.+.   +....++|+|.|++|+||.+.+..+++++.||...|..+.|-.++.+|++++.||  -
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG--l  570 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG--L  570 (775)
T ss_pred             eEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC--c
Confidence            9999999999998887543   5678999999999999999999999999999999999999999999999999775  8


Q ss_pred             EEEEeec
Q 021459          305 VRVWVQD  311 (312)
Q Consensus       305 v~iw~~~  311 (312)
                      ++||++.
T Consensus       571 iKlWnik  577 (775)
T KOG0319|consen  571 IKLWNIK  577 (775)
T ss_pred             EEEEecc
Confidence            9999873

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-36  Score=227.69  Aligned_cols=239  Identities=27%  Similarity=0.521  Sum_probs=213.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..=|-..+|+|.|+++|.||.|....||++.+.      +....+.+|++.+.++.|.+|+ .|++++.|.+..+||+++
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET  175 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc
Confidence            344667899999999999999999999998754      3445678999999999998855 677999999999999998


Q ss_pred             CceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      + +.+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.+.|.+|...|+++.|.|+|.-|++|+.|++++
T Consensus       176 g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  176 G-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR  254 (343)
T ss_pred             c-eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence            6 55778899999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          175 IWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      +||+|..+.+..+..+ ....+..++|+..|++|.+|..|.++.+||.-.++.+..+.+|.+...|+..   .++|..++
T Consensus       255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---s~DG~av~  331 (343)
T KOG0286|consen  255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---SPDGMAVA  331 (343)
T ss_pred             EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE---CCCCcEEE
Confidence            9999998877665432 2345778899999999999999999999999999999999999998777654   48999999


Q ss_pred             EeecCCeEEEEE
Q 021459          254 SGSEDNCVYVWD  265 (312)
Q Consensus       254 ~~~~dg~i~iwd  265 (312)
                      +|+-|..++||.
T Consensus       332 TgSWDs~lriW~  343 (343)
T KOG0286|consen  332 TGSWDSTLRIWA  343 (343)
T ss_pred             ecchhHheeecC
Confidence            999999999994

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1e-36  Score=232.26  Aligned_cols=292  Identities=27%  Similarity=0.514  Sum_probs=237.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------------------ceEEEeeeccCCEEEEEEccC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------------------ALVHRFVGHSEGISDLAWSSD   75 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~   75 (312)
                      +..++..|+.++.+-+|+|||.++|||+.|-+|++.|++..                  ..+..+-.|.+.|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            44678899999999999999999999999999999998621                  124455578999999999999


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe---eecCc
Q 021459           76 SHYICSASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI---RAHSM  150 (312)
Q Consensus        76 ~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~  150 (312)
                      ...|++++.|++|+++|...+.  +..+.+ ....+|.+++|+|.|.+++.|....++++||+++-++...-   ..|..
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            9999999999999999986431  111112 23468999999999999999999999999999998875432   45788


Q ss_pred             CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      .|+++.+++.+++.++++.||.|++||--+++++.++...+ +..++.+.|..+|+++++.+.|..+++|.+.+++.+..
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            99999999999999999999999999999999988886655 45688889999999999999999999999999999998


Q ss_pred             EEccCC--ce-eEEEEEEEccCCcEEEEe-ecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          230 YTGHTN--KK-YCITSTFSVTNGKYIVSG-SEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       230 ~~~~~~--~~-~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      +.+...  .. ......|. ..+++++.- -..+.+.-||.++......+ .+|++.+..+.-+|.+.-++++|.|  .+
T Consensus       343 YtGAg~tgrq~~rtqAvFN-htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD--~r  419 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFN-HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD--FR  419 (430)
T ss_pred             EecCCcccchhhhhhhhhc-CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc--ce
Confidence            876521  11 11112222 345555443 34567889999887666554 4799999999999999999999954  78


Q ss_pred             EEEEe
Q 021459          305 VRVWV  309 (312)
Q Consensus       305 v~iw~  309 (312)
                      +|+|-
T Consensus       420 aRFWy  424 (430)
T KOG0640|consen  420 ARFWY  424 (430)
T ss_pred             eeeee
Confidence            99994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.3e-36  Score=256.44  Aligned_cols=251  Identities=35%  Similarity=0.642  Sum_probs=216.4

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeC-CCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSA-SSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..+++.+|...|+.++|+|++.++++++.|++|++|+. ..+..+..+.+|...|++++|+|+++++++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            45667899999999999999999999999999999999 55688899999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEeeecCc--CeEEEEEccCCCEEEEee
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSM--PVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~~~  168 (312)
                      +++ .++...+.+|.+.|.+++|+++++.+++++.|+.|++||+.++.  +...+..+..  +++.+.|+|++.++++++
T Consensus       275 ~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  275 VRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             ccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            998 47888999999999999999999999999999999999999998  4566665544  499999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCC--cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDP--AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .|+.+++||++.+........+...  .+......+.+.++++|+.|+.|++||..++..+..+.+|..  ..+......
T Consensus       354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~--~~~~~~~~~  431 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK--AAVSDLSSH  431 (456)
T ss_pred             CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC--CceeccccC
Confidence            9999999999998887777665544  333444578999999999999999999999888888888841  122223344


Q ss_pred             cCCcEEEEee--cCCeEEEEECC
Q 021459          247 TNGKYIVSGS--EDNCVYVWDLQ  267 (312)
Q Consensus       247 ~~~~~l~~~~--~dg~i~iwd~~  267 (312)
                      +...++++++  .|+.+++|...
T Consensus       432 ~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  432 PTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCcCeeeecCcCCCceEEEecCC
Confidence            6677888888  79999999653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=247.78  Aligned_cols=286  Identities=24%  Similarity=0.446  Sum_probs=245.6

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      .++.+|...|.++++|.+...+++|+. +++++|+..+.+.+.++..  ..+.+..|.|-++++++|...|.+.+||+..
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            456799999999999999888888755 6899999999999888764  4788899999999999999999999999976


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-----CeEEEEeee-------cCcCeEEEEEccCCCE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-----GKCTRVIRA-------HSMPVTSVHFNRDGSL  163 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~  163 (312)
                      . ..+.+.++|.+.+++++.+||++.+++||.|.+|++||..-     +...+.+.-       -...|.|+.+||||++
T Consensus       444 ~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  444 A-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             h-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            4 45666779999999999999999999999999999999741     221111211       2356899999999999


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST  243 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
                      ++++--|+++++|-+.+-+....+.++. -++.++.++||++.+++|+.|+.|++|-++-|.+.+.+.+|.....++.  
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~--  599 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ--  599 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE--
Confidence            9999999999999998877777776654 5577788999999999999999999999999999998888887654443  


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      | .|...++.+++.||.|+-||-...+.++.+.+|...|+|++.+|+|.+++++|  .|.+||+|..+
T Consensus       600 F-~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~t  664 (888)
T KOG0306|consen  600 F-LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERT  664 (888)
T ss_pred             E-cccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc--CCceeEeeecc
Confidence            3 35778899999999999999999999999999999999999999999999999  55799999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.6e-37  Score=243.00  Aligned_cols=239  Identities=24%  Similarity=0.475  Sum_probs=203.6

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  144 (312)
                      -.|..+.|.|+|+.|++|+..|.+.+|+... ...-..++.|++.|.++.|++++.++++|+.+|.|+.|+.+-.. ++.
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~  174 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI  174 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence            4788999999999999999999999998743 22223356899999999999999999999999999999977544 344


Q ss_pred             eeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          145 IRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       145 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      +++| ...|++++|+|+...|++++.||+|+|||....+..+.+ ..+...+.++.|+|...++++++.|+.|++||.++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            4444 489999999999999999999999999999876655544 45677789999999999999999999999999999


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCC
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGD  302 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd  302 (312)
                      ++++..+..|..   ++....+.+++.+|+++|.|..++++|+++.+.+..+++|...|++++|||-. ..|.+||.|  
T Consensus       254 g~cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D--  328 (464)
T KOG0284|consen  254 GSCLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD--  328 (464)
T ss_pred             cchhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC--
Confidence            999988877655   34445556788999999999999999999888899999999999999999964 577777855  


Q ss_pred             eeEEEEeec
Q 021459          303 RTVRVWVQD  311 (312)
Q Consensus       303 ~~v~iw~~~  311 (312)
                      +.|..|.++
T Consensus       329 gsvvh~~v~  337 (464)
T KOG0284|consen  329 GSVVHWVVG  337 (464)
T ss_pred             CceEEEecc
Confidence            588888874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-36  Score=231.28  Aligned_cols=249  Identities=33%  Similarity=0.588  Sum_probs=223.5

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ...+.|.+|+++|..++|+..|++|++++.|-.+++||... .+++..+.+|...|.+++|-|-|.++++++.|.+|+.|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W  220 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW  220 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE
Confidence            44667899999999999999999999999998899999987 45666778899999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-----------
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-----------  160 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-----------  160 (312)
                      +..++ .+++++.+|...|..++.+.||..+++++.|.+|++|-+.++++...++.|..+|.+++|.|.           
T Consensus       221 e~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  221 ECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             ecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            99986 678999999999999999999999999999999999999999999999999999999999763           


Q ss_pred             ----CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459          161 ----GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK  236 (312)
Q Consensus       161 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  236 (312)
                          +.++.+++.|++|++||+.++.++.++.+ ++..+..++|+|.|++|+++..|+++++||++++++.+.+..|..-
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf  378 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF  378 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence                25899999999999999999999998865 5677888999999999999999999999999999999988877665


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      ..++   ....+..++++|+-|..+++|.-
T Consensus       379 vt~l---Dfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  379 VTSL---DFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEE---ecCCCCceEEeccccceeeeeec
Confidence            4443   33445669999999999999963

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=215.55  Aligned_cols=295  Identities=22%  Similarity=0.399  Sum_probs=239.1

Q ss_pred             CCCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE--EeeeccCCEEEEEEccC-CCeEEEE
Q 021459            6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH--RFVGHSEGISDLAWSSD-SHYICSA   82 (312)
Q Consensus         6 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~   82 (312)
                      .++++.+.. +.+++|.+.|.+++|+.+|..|++|+.|+++.+|++.....+.  ...+|.+.|..++|+|. ...++++
T Consensus         5 ~~~~~~l~~-r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen    5 LPKFKSLKR-RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             ccchhhhhh-HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            355666654 7788999999999999999999999999999999998765433  35689999999999984 6799999


Q ss_pred             cCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC
Q 021459           83 SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        83 ~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
                      +.|++|++||.+..+. ........+.+ -+.|+|++++++.++.|..|.+.|.++-+.....+ ....+..+.|+.++.
T Consensus        84 s~dk~ir~wd~r~~k~-~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKC-TARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND  160 (313)
T ss_pred             cCCceEEEEEeccCcE-EEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC
Confidence            9999999999988643 43333233333 47899999999999999999999999877655443 334577788888888


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      +|+.....|.|.|....+-+.+..+.. +.....++.|+|+|+++|+|+.|..+.+||++.--+++.+..+.-+   +..
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp---VRT  236 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP---VRT  236 (313)
T ss_pred             EEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---eEE
Confidence            888888889999988776666666544 4456667889999999999999999999999887777777655433   444


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCe-------eEEEEe
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR-------TVRVWV  309 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~-------~v~iw~  309 (312)
                      ..+..+|++||+|++|..|-|=+.+++..+.+++ +.++...|+|||....||.+..|.+.       +|+++=
T Consensus       237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG  309 (313)
T KOG1407|consen  237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG  309 (313)
T ss_pred             EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence            4445789999999999999999999999888876 68899999999999999999887764       777763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.7e-34  Score=225.34  Aligned_cols=279  Identities=32%  Similarity=0.508  Sum_probs=229.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCCCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      .|.+=|+++...  ++.|+||+.||.+++|+.. |+....+.+|.++|.+++|.-.   ...+++++.|.++++|..+.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488888888877  7889999999999999955 6777889999999998888643   346999999999999987654


Q ss_pred             ce---eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-------------------------CeEEEEeeec
Q 021459           97 FD---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-------------------------GKCTRVIRAH  148 (312)
Q Consensus        97 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-------------------------~~~~~~~~~~  148 (312)
                      ..   .++.-+||...|-+++..+++..+++|+.|..|++|+..+                         +.++..+.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            32   2333458999999999999999999999999999999321                         1234567889


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---  225 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---  225 (312)
                      ..+|.++.|++ ...+.+++.|-+|+.||+.++....++..  ...+.++..+|..++|++|+.|..+++||.+++.   
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence            99999999987 66899999999999999999988877654  3457778899999999999999999999998764   


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh-eeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT-MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      ....+.+|..-.  -.+.+.+.+...|++|+.||++++||+++-. ++..+.+|.+.|.++.|.. +..+++||.|  .+
T Consensus       337 v~~s~~gH~nwV--ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD--~~  411 (423)
T KOG0313|consen  337 VSQSLIGHKNWV--SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD--NK  411 (423)
T ss_pred             eEEeeecchhhh--hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc--ce
Confidence            235577777633  3334556667789999999999999998765 8899999999999999974 4589999966  68


Q ss_pred             EEEEe
Q 021459          305 VRVWV  309 (312)
Q Consensus       305 v~iw~  309 (312)
                      |+|+.
T Consensus       412 l~i~~  416 (423)
T KOG0313|consen  412 LRIFK  416 (423)
T ss_pred             EEEec
Confidence            88875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=215.39  Aligned_cols=279  Identities=23%  Similarity=0.422  Sum_probs=218.7

Q ss_pred             EEEECC-CCCEEEEE-------eCCCeEEEEeCCCcceEEEee--eccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCC
Q 021459           27 CVKFSN-DGTLLASA-------SLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSD-SHYICSASDDRTLRIWDART   95 (312)
Q Consensus        27 ~~~~s~-~~~~l~t~-------~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ++.||| -.++||.+       ...|.+.|.++...+-+....  .-.+.+..++|++. .+.+++++.||++++||+..
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~   92 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM   92 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence            478998 23333332       235888898886443333222  23578999999985 56888999999999999877


Q ss_pred             CceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTC  173 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i  173 (312)
                      +..++..++.|...|.++.|++- ...+++++.|++|++|+...++.+.++.+|...|+..+|+| ..+++++++.|+.+
T Consensus        93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l  172 (311)
T KOG0277|consen   93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL  172 (311)
T ss_pred             CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence            77778889999999999999984 45688889999999999999999999999999999999999 67899999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      ++||++.......+ ..+...+.++.|+. +...|++|+.|+.|+.||+++-+ .+..+.+|.-....+  .+++....+
T Consensus       173 ~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv--k~Sph~~~l  249 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV--KFSPHHASL  249 (311)
T ss_pred             EEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE--ecCcchhhH
Confidence            99999875444444 33445566666765 56688999999999999998765 355566665443333  344445678


Q ss_pred             EEEeecCCeEEEEECC-chheeecccCCccceEEEEEcC-CCceEEEeeecCCeeEEEEee
Q 021459          252 IVSGSEDNCVYVWDLQ-QKTMIQKLDGHTDSVISVTCHP-TENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |++++.|-+++|||.. ....+.+...|+.-|..+.|++ ++.++|+.|.|+  .+.||++
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe--~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE--LLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc--ceeeecc
Confidence            9999999999999997 4455667788999999999987 467899999774  8999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-34  Score=218.52  Aligned_cols=247  Identities=28%  Similarity=0.499  Sum_probs=211.9

Q ss_pred             EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459           57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~  136 (312)
                      +..+.+|++.|+.+.|+|+|.++++|+.|..|.+|++....+..-.+++|.+.|..+.|.+|++.+++++.|.+|+.||.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            34567899999999999999999999999999999986655666678899999999999999999999999999999999


Q ss_pred             CCCeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459          137 KTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST  215 (312)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
                      ++|++.+.++.|..-++.+.-+.-| .++.+++.|+++++||+|+...++.+.  ....+..+.|...+..+.+|+.|+.
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCc
Confidence            9999999999999988888755444 456688999999999999888777663  2456788899999999999999999


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCc----cceEEEEE
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHT----DSVISVTC  287 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~----~~v~~l~~  287 (312)
                      |++||++.++...++.+|.+.   ++..+..+.|.++.+-+.|.++++||.+..    .++..+++|.    ...+..+|
T Consensus       198 ikvWd~r~~d~~~~lsGh~Dt---It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADT---ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             eeeeccccCcceEEeecccCc---eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence            999999999999999999886   444555688999999999999999999643    3355566643    35677789


Q ss_pred             cCCCceEEEeeecCCeeEEEEee
Q 021459          288 HPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       288 ~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +|++..+.+++.|  ..|.+|+.
T Consensus       275 sp~~~~i~ags~d--r~vyvwd~  295 (338)
T KOG0265|consen  275 SPNGTKITAGSAD--RFVYVWDT  295 (338)
T ss_pred             cCCCCcccccccc--ceEEEeec
Confidence            9999999988855  79999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.3e-33  Score=237.98  Aligned_cols=269  Identities=20%  Similarity=0.291  Sum_probs=209.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-------------EEeeeccCCEEEEEEcc-CCCeEEEEcCCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV-------------HRFVGHSEGISDLAWSS-DSHYICSASDDR   86 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   86 (312)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4456667777888777788888888888876544322             13678999999999999 788999999999


Q ss_pred             eEEEEeCCCCc------eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459           87 TLRIWDARTPF------DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        87 ~v~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
                      .|++||+.+..      ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+..|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            99999986532      2456778999999999999975 6999999999999999999998888888999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe----cCCeEEEEEcCCCc-EEEEEEccC
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT----LDSTLKLWNYSAGK-FLKIYTGHT  234 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~-~~~~~~~~~  234 (312)
                      ++.+|++++.|+.|++||+++++.+..+..+.......+.|.+++..+++++    .|+.|++||+++.. .+.....+.
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~  258 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ  258 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence            9999999999999999999998887776554444444566888887777654    47899999998654 333332222


Q ss_pred             CceeEEEEEEEccCCcEEEEee-cCCeEEEEECCchheeecccC-CccceEEEEEcCCC
Q 021459          235 NKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTE  291 (312)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~  291 (312)
                      ..  .+...+..+++.+|++++ .||.|++||+.+++.+..... +..++..+++.|..
T Consensus       259 ~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        259 SS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            21  223334556788888877 599999999998877655433 44567888888753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.5e-34  Score=233.91  Aligned_cols=296  Identities=28%  Similarity=0.465  Sum_probs=228.9

Q ss_pred             CCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE----e-eeccCCEEEEEEccCCCeEEEEc
Q 021459            9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR----F-VGHSEGISDLAWSSDSHYICSAS   83 (312)
Q Consensus         9 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~~~~   83 (312)
                      ..|+.+..++.+|++.|+++++.|.|.++++|+.|..|++||+..+....+    + .+....|.++.|++.|..|++.+
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            356777788999999999999999999999999999999999986533211    1 12345789999999999888888


Q ss_pred             CCCeEEEEeCCCCcee------------eeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-EEEee---
Q 021459           84 DDRTLRIWDARTPFDC------------LKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-TRVIR---  146 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~---  146 (312)
                      .....+++|-.. .+.            +..-+||...+.|.+|+|+. +.+++++.||++++||+++-+. .++++   
T Consensus       234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            888999998643 221            23346899999999999976 5799999999999999975432 33332   


Q ss_pred             --ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee--eEcccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459          147 --AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL--KTLIDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWN  220 (312)
Q Consensus       147 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d  220 (312)
                        +...+++.++|+|+++.+|+|..||.|.+|+.++...-  ..+...+  ...++++.|+++|++|++-+.|+++++||
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence              22456889999999999999999999999998653321  1122223  34789999999999999999999999999


Q ss_pred             cCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEee------cCCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459          221 YSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGS------EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       221 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      +++-+ .+....+-........++| .|+.++|++|.      ..|.+.+||..+...++++.-....|..+.|||.-++
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ  471 (641)
T ss_pred             ccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence            98754 4554444333222233344 47788999875      4688999999999888888877889999999999999


Q ss_pred             EEEeeecCCeeEEEE
Q 021459          294 IASAGLDGDRTVRVW  308 (312)
Q Consensus       294 l~~~~~dgd~~v~iw  308 (312)
                      +..++.|  ++++++
T Consensus       472 i~~gsgd--G~~~vy  484 (641)
T KOG0772|consen  472 IFAGSGD--GTAHVY  484 (641)
T ss_pred             eeeecCC--CceEEE
Confidence            9999955  566653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=237.54  Aligned_cols=248  Identities=27%  Similarity=0.441  Sum_probs=218.1

Q ss_pred             EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459           59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                      ++..++..|.++.++|....++++-.+|.|.+||-++. ..++.+.-..-+|++..|-+-.+++++|+.|..|++|+.++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            44558899999999999999999999999999998874 56777777778899999999899999999999999999999


Q ss_pred             CeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEE
Q 021459          139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLK  217 (312)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~  217 (312)
                      ++.++.+.+|..-|++++.+|...++++++.|-.|++||...+-...+....+.--+..++|.| |.+.+++++.|++|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            9999999999999999999999999999999999999999876544444444444455667777 567999999999999


Q ss_pred             EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      +|.+-+.....++++|....+|+..- ...+..+|++|++|..|++||.++..++++++||...|+.+.|||.-+.+++|
T Consensus       167 VWslgs~~~nfTl~gHekGVN~Vdyy-~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLEGHEKGVNCVDYY-TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEcCCCCCceeeeccccCcceEEec-cCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            99999888889999999998888642 33455699999999999999999999999999999999999999999999999


Q ss_pred             eecCCeeEEEEee
Q 021459          298 GLDGDRTVRVWVQ  310 (312)
Q Consensus       298 ~~dgd~~v~iw~~  310 (312)
                      |.|  ++||||+-
T Consensus       246 sED--GTvriWhs  256 (794)
T KOG0276|consen  246 SED--GTVRIWNS  256 (794)
T ss_pred             cCC--ccEEEecC
Confidence            965  59999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=211.18  Aligned_cols=239  Identities=29%  Similarity=0.518  Sum_probs=196.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC--
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR--   94 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~--   94 (312)
                      .+|+..|+.++|+|.|++|++|+.|.++.||.-..  .+++..++||...|.+++|+++|.+||+|+.|++|-+|.+.  
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            36999999999999999999999999999997653  47889999999999999999999999999999999999886  


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-C--eEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-G--KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      ...++...+..|...|..+.|+|...+|+++++|.+|++|+-.. +  .+..++.+|...|.+++|+|.|..+++++.|+
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence            44567888899999999999999999999999999999997652 2  57788999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--E-----EEEEEccCCceeEEEEEE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--F-----LKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~-----~~~~~~~~~~~~~~~~~~  244 (312)
                      +++||-....     +...+...+..+.|.  ...|++++.|+.|++|--...-  .     .+.-..|...   +....
T Consensus       218 tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---VNsV~  287 (312)
T KOG0645|consen  218 TVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---VNSVQ  287 (312)
T ss_pred             ceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc---cceEE
Confidence            9999976532     223344556667777  4589999999999999754321  0     1112234443   33333


Q ss_pred             Ecc-CCcEEEEeecCCeEEEEECC
Q 021459          245 SVT-NGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       245 ~~~-~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ..| ....|++|++||.|++|.+.
T Consensus       288 w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  288 WNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EcCCCCCceeecCCCceEEEEEec
Confidence            334 46789999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.5e-34  Score=222.98  Aligned_cols=244  Identities=24%  Similarity=0.425  Sum_probs=214.3

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                      ..+.+|.+.|.++++.|-.+++++|+.|++++|||+.++ +...++.||-..|..+++++-..++++++.|+.|+.||++
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            446789999999999999999999999999999999986 5567889999999999999999999999999999999999


Q ss_pred             CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459          138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK  217 (312)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
                      ..+.++.+.+|-..|++++.+|.-..+++|+.|.++++||+++...+..+.++. ..+..+.+.|-...+++|+.|++|+
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCceEEecCCceEE
Confidence            999999999999999999999999999999999999999999988888776654 4566666777778899999999999


Q ss_pred             EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      +||++.++....+..|.....+   ....|....+|+++.|. |+-|++..+..+..+.+|.+-|++++...|+ .+++|
T Consensus       303 lWDl~agkt~~tlt~hkksvra---l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G  377 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRA---LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG  377 (460)
T ss_pred             EeeeccCceeEeeecccceeeE---EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence            9999999988888777654333   33446677888888885 9999999999999999999999999998876 77777


Q ss_pred             eecCCeeEEEEee
Q 021459          298 GLDGDRTVRVWVQ  310 (312)
Q Consensus       298 ~~dgd~~v~iw~~  310 (312)
                      +.  .+.+.+|+.
T Consensus       378 ~d--ng~~~fwdw  388 (460)
T KOG0285|consen  378 GD--NGSIMFWDW  388 (460)
T ss_pred             CC--ceEEEEEec
Confidence            73  468999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-34  Score=243.64  Aligned_cols=249  Identities=31%  Similarity=0.601  Sum_probs=201.4

Q ss_pred             eeeec-ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------------c-------
Q 021459           15 FKTLT-AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--------------------------------L-------   54 (312)
Q Consensus        15 ~~~~~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--------------------------------~-------   54 (312)
                      .+.+. +|+++|-+++||+||++||+||.|+.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34456 8999999999999999999999999999996543                                0       


Q ss_pred             ---------------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           55 ---------------------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        55 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                                           +++..+.||...|.+|.|+.++ +|++++.|++|++|++.. ..+++.+. |.+.|.|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV  415 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV  415 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence                                 1122356899999999999755 888999999999999986 47787764 99999999


Q ss_pred             EEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc----
Q 021459          114 NFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI----  188 (312)
Q Consensus       114 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----  188 (312)
                      +|+| |.+++++|+.|+.|++|++...+...-...+ .-|++++|.|||+..+.|+.+|.+++|+....+......    
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            9999 6789999999999999999877654433333 579999999999999999999999999988765543221    


Q ss_pred             ---cCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459          189 ---DDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW  264 (312)
Q Consensus       189 ---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  264 (312)
                         ......|+.+.+.|.. ..+++.+.|..|||||.++...+..+++.......+...+.. +|++|+++++|..|++|
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIW  573 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEE
Confidence               1112246777776643 357888899999999998888888888777666666666664 89999999999999999


Q ss_pred             ECCc
Q 021459          265 DLQQ  268 (312)
Q Consensus       265 d~~~  268 (312)
                      +...
T Consensus       574 ~~~~  577 (712)
T KOG0283|consen  574 KNDS  577 (712)
T ss_pred             eCCC
Confidence            9743

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=226.92  Aligned_cols=295  Identities=21%  Similarity=0.383  Sum_probs=232.1

Q ss_pred             CccCCCCCCceeceeeeccc--ccceEEEEECCCCCE-EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCe
Q 021459            2 AAAQTPPYKPYRHFKTLTAH--SRAVSCVKFSNDGTL-LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHY   78 (312)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   78 (312)
                      |+..+|++...+.+....-|  .++|++++|+|...+ +|+.+. -.+.+|+..+......+......|+++.|..||++
T Consensus         4 ~~~~t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~L   82 (487)
T KOG0310|consen    4 PQSETPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRL   82 (487)
T ss_pred             CcCCCccchhhhhhcccccccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeE
Confidence            34455555544444443333  468999999997654 444333 57999998887776666667789999999999999


Q ss_pred             EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459           79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
                      |++|...|.|+++|+.+ ...+..+.+|..++....|+|+.+ .+++|+.|+.+++||+.+......+.+|...|.+.+|
T Consensus        83 laaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             EEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence            99999999999999554 456778899999999999999765 5777888888999999988865578899999999999


Q ss_pred             ccC-CCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE-EEEEEccC
Q 021459          158 NRD-GSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-LKIYTGHT  234 (312)
Q Consensus       158 ~~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~  234 (312)
                      +|. +..+++|+.||.|++||.+.. ..+.++  +++.++..+.+-|.|..+++++. ..|++||+.+|.. +.....|.
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~  238 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN  238 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence            995 458899999999999999986 444443  46677888889999999998875 4799999986654 33344466


Q ss_pred             CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeE
Q 021459          235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV  305 (312)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v  305 (312)
                      ....|+.   ...++..|++|+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..+|-..+
T Consensus       239 KtVTcL~---l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  239 KTVTCLR---LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ceEEEEE---eecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            6555543   34577899999999999999988877777665 5789999999999999999987764333

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.5e-33  Score=209.66  Aligned_cols=282  Identities=17%  Similarity=0.291  Sum_probs=222.0

Q ss_pred             eeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-ceE-EEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-ALV-HRFVGHSEGISDLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v   88 (312)
                      .+.+..-...++.|.+|+||| ...+++.++.|++||+|+++.. ... .....|.++|.+++|+.||..+++|+.|+.+
T Consensus        17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~   96 (347)
T KOG0647|consen   17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA   96 (347)
T ss_pred             ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence            344444456789999999999 5567778999999999999873 332 2345689999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCC--EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      ++||+.++  .+..+..|.++|.++.|-+..+  .|+||++|.+|++||+++...+..++- ...++++..  -..++++
T Consensus        97 k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vV  171 (347)
T KOG0647|consen   97 KLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVV  171 (347)
T ss_pred             EEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEE
Confidence            99999986  3667778999999999987665  899999999999999998887776653 335666554  3457888


Q ss_pred             eeCCCeEEEEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--cEEEEEEccCC------ce
Q 021459          167 GSHDGTCKIWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--KFLKIYTGHTN------KK  237 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~------~~  237 (312)
                      +..++.|.+|+++++... +.+.......+.+++.-++.+..+.|+.+|.+.+..+..+  +.-..+..|..      ..
T Consensus       172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V  251 (347)
T KOG0647|consen  172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV  251 (347)
T ss_pred             EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence            899999999999776433 2222223445677777778877899999999999888765  33334444432      35


Q ss_pred             eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +.+....+.|.-..|+|++.||+..+||-.....+...+.|..+|.+.+|+.+|..++.+.
T Consensus       252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            6666555566777899999999999999988888888899999999999999999988663

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=4.5e-32  Score=233.92  Aligned_cols=249  Identities=18%  Similarity=0.306  Sum_probs=194.7

Q ss_pred             EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCc-------eeeeeeecccccEE
Q 021459           40 ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPF-------DCLKTLRGHSDFVF  111 (312)
Q Consensus        40 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~-------~~~~~~~~~~~~v~  111 (312)
                      |+.++.+++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.+..       ..+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567789999998877778889999999999999997 7899999999999999987532       12345678999999


Q ss_pred             EEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC
Q 021459          112 CVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       112 ~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (312)
                      +++|+|++.. +++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+.++..+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 5789999999999999988766664 5678999999999999999999999999999999887776554


Q ss_pred             CCCc----EEEEEECCCCCEEEEEecCC----eEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459          191 KDPA----VSFAKFSPNGKFILVGTLDS----TLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV  261 (312)
Q Consensus       191 ~~~~----~~~~~~~~~~~~l~~~~~d~----~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  261 (312)
                      ....    +....+++++.+|++++.|+    +|++||++. ++.+..+..+.. ...+...+..+++.++++|+.|+.|
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeE
Confidence            4322    12234568889999988774    799999985 455554433222 2223334445678899999999999


Q ss_pred             EEEECCchheeecccC--CccceEEEEEcCCC
Q 021459          262 YVWDLQQKTMIQKLDG--HTDSVISVTCHPTE  291 (312)
Q Consensus       262 ~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~  291 (312)
                      ++|++..+.. ..+..  +..+..+++|.|..
T Consensus       288 r~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        288 RYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEccCCcE-EeecccccCCCccceEEcccc
Confidence            9999976543 22222  45778899999975

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1e-34  Score=228.76  Aligned_cols=288  Identities=24%  Similarity=0.440  Sum_probs=239.9

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|+....+  ....+.+..++|+++.|.++++++++++.|+.+++|
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            334567899999999999999999999999999999987765  566677778899999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      ++... +...++.+|.+.|.++.|......+++|+.|.+|+.||+....|.++... ...+..+..+  ...+++|..|+
T Consensus       247 nvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dk  322 (459)
T KOG0288|consen  247 NVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDK  322 (459)
T ss_pred             eccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccccc
Confidence            99874 56778999999999999988776799999999999999999888766532 2345566554  55789999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEEEEEEEccCCc
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCITSTFSVTNGK  250 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  250 (312)
                      +|++||.++.........  .+.++.+..++++..|++++.|.++.++|+++.+....+....... ...+...+.|+++
T Consensus       323 kvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             ceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence            999999999887776643  3478889999999999999999999999999988877766433221 1133334458899


Q ss_pred             EEEEeecCCeEEEEECCchheeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          251 YIVSGSEDNCVYVWDLQQKTMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ++++|+.||.|+||++.++++...+.....  .|++++|.|.|..|++++  .+..+.+|.
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--k~~~v~lW~  459 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--KQKAVTLWT  459 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc--CCcceEecC
Confidence            999999999999999999988877766544  599999999999999988  456888883

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.3e-33  Score=242.80  Aligned_cols=289  Identities=25%  Similarity=0.411  Sum_probs=232.0

Q ss_pred             ccccceEEEEECCCCCEEEEEe--CCCeEEEEeCCCc------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASAS--LDKTVIIWSASSL------------ALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      .++..|.++..+|++..+||||  .|+.+++|+....            +.+.....|.+.|+|+.|+|||++||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            4567899999999999999999  8999999986531            2344556799999999999999999999999


Q ss_pred             CeEEEEeCCC-----------------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec
Q 021459           86 RTLRIWDART-----------------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH  148 (312)
Q Consensus        86 ~~v~~wd~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  148 (312)
                      +.|.+|+...                 ..++...+.+|+..|..++|+|++.++++++.|++|.+|+.++.+.+..+++|
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence            9999998652                 01245678899999999999999999999999999999999999999999999


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-----CcEEEEEECCCCCEEEEEec----CCeEEEE
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-----PAVSFAKFSPNGKFILVGTL----DSTLKLW  219 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~----d~~i~v~  219 (312)
                      ...|..+.|.|-|++|++-+.|++|++|++.+-...+.+....+     ..+..+.|+|||++|++...    -..+.|.
T Consensus       171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii  250 (942)
T KOG0973|consen  171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII  250 (942)
T ss_pred             cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence            99999999999999999999999999999777555555533322     23556789999999998632    2468888


Q ss_pred             EcCCCcEEEEEEccCCceeEEEEEEE---ccC-------Cc----EEEEeecCCeEEEEECCchheeeccc-CCccceEE
Q 021459          220 NYSAGKFLKIYTGHTNKKYCITSTFS---VTN-------GK----YIVSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVIS  284 (312)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~----~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~  284 (312)
                      +..+-+.-..+.+|..+..++.+...   .+.       +.    .+|+|+.|++|.||.....+++..+. -....|..
T Consensus       251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D  330 (942)
T KOG0973|consen  251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD  330 (942)
T ss_pred             ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence            87555556677888886555433211   011       11    68999999999999987666554432 24678999


Q ss_pred             EEEcCCCceEEEeeecCCeeEEEEee
Q 021459          285 VTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       285 l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++|+|+|-.|.++|.||  +|.+.++
T Consensus       331 msWspdG~~LfacS~DG--tV~~i~F  354 (942)
T KOG0973|consen  331 MSWSPDGFSLFACSLDG--TVALIHF  354 (942)
T ss_pred             eeEcCCCCeEEEEecCC--eEEEEEc
Confidence            99999999999999886  7777665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7e-33  Score=215.29  Aligned_cols=247  Identities=25%  Similarity=0.431  Sum_probs=204.1

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ...++.+|+++|+++.|+.+|.+||||+.+|.|+||...++.....+...-..+.-+.|+|.+..|++|+.||.+-+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            44578899999999999999999999999999999999999988888767778899999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee------cC------------------
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA------HS------------------  149 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~------~~------------------  149 (312)
                      .+. ...+.+.||..++.+-.|.|+|+.++++..||+|++|++.+++.+..+..      +.                  
T Consensus       178 p~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  178 PSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            874 56788899999999999999999999999999999999999876654431      00                  


Q ss_pred             ---------------------------cC---eEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459          150 ---------------------------MP---VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK  199 (312)
Q Consensus       150 ---------------------------~~---v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (312)
                                                 ..   |..+.++..-.+.++|+-||+|.|||+...+..+.. .+ ...+..+.
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~h-e~~V~~l~  334 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EH-EDGVTKLK  334 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cC-CCceEEEE
Confidence                                       00   001111222235788999999999998876544333 33 34466677


Q ss_pred             ECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          200 FSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       200 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      |.+ ..+|++++.+|.|+.||.++|..+..+.+|...+.++..   .++.++++|+|.|++.++|+..
T Consensus       335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l---s~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL---SPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE---cCCCcEEEEecCCCeEEEEecC
Confidence            888 689999999999999999999999999999988766543   4689999999999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.3e-35  Score=226.13  Aligned_cols=229  Identities=31%  Similarity=0.658  Sum_probs=198.6

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      ..+|+|+.+  |...+++|..|++|++||..+ ..+++.+.||.+.|.|+.|.  .+.+++|+.|.+|++||.++++++.
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            457888888  556799999999999999876 57888899999999999885  4699999999999999999999999


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      ++-.|...|..+.|+.  .++++++.|..+.+||+.....  .+.....+...+..+.|  +.+++++++.|.+|++|+.
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEec
Confidence            9999999999999974  4899999999999999976542  22233445566666665  4569999999999999999


Q ss_pred             CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      .+++.++++.+|.....|..     .+++++++|+.|.+|++||+..+.++..++||+.-|.++.|  +.+.+++|++||
T Consensus       348 st~efvRtl~gHkRGIAClQ-----Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG  420 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG  420 (499)
T ss_pred             cceeeehhhhcccccceehh-----ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence            99999999999988765543     46899999999999999999999999999999999999999  678999999986


Q ss_pred             CeeEEEEee
Q 021459          302 DRTVRVWVQ  310 (312)
Q Consensus       302 d~~v~iw~~  310 (312)
                        .|++|++
T Consensus       421 --kikvWdl  427 (499)
T KOG0281|consen  421 --KIKVWDL  427 (499)
T ss_pred             --eEEEEec
Confidence              8999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=8.1e-33  Score=237.70  Aligned_cols=273  Identities=32%  Similarity=0.638  Sum_probs=236.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE-eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR-FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      |...+.+..|.  ...+++++.+++|++|+..++..+.. +.+|.+.|.++++..-+.+|++|+.|.++++||..++ ++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-~C  283 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-EC  283 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-cE
Confidence            56678888887  66789999999999999999988877 9999999999999887889999999999999998775 78


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (312)
                      ...+.+|.+.+.++...+  ..+++|+.|.+|++|++.++.++..+.+|..+|.++..+  +.++++|+.|+.|++||..
T Consensus       284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            899999999999987644  578889999999999999999999999999999999986  7799999999999999999


Q ss_pred             CCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      ++++++.+.+ +...+..+.+.+. ..++.|+.|+.|++||+++. +++..+.+|..-...+.     ..+++|++++.|
T Consensus       360 ~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~-----~~~~~Lvs~~aD  432 (537)
T KOG0274|consen  360 TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL-----LRDNFLVSSSAD  432 (537)
T ss_pred             hceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc-----cccceeEecccc
Confidence            9999998877 4455666656554 79999999999999999999 88888888877553332     347799999999


Q ss_pred             CeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          259 NCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       259 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |.|++||..+++.+..+.+ |...|..+++.  ...+++++.|  +++++|++.
T Consensus       433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~--~~~~l~dl~  482 (537)
T KOG0274|consen  433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDD--GSVKLWDLR  482 (537)
T ss_pred             ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecC--CeeEEEecc
Confidence            9999999999999999998 67888888876  4567777755  699999863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.9e-32  Score=249.88  Aligned_cols=259  Identities=21%  Similarity=0.399  Sum_probs=209.6

Q ss_pred             CCeEEEEeCCCcceEEE-----eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-------eeeeeeecccccE
Q 021459           43 DKTVIIWSASSLALVHR-----FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-------DCLKTLRGHSDFV  110 (312)
Q Consensus        43 d~~i~vw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-------~~~~~~~~~~~~v  110 (312)
                      +|.+++|+.........     +..|...|.+++|+|++++|++|+.|+.|++|+.....       .....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            57788888776554333     34588999999999999999999999999999975311       0112222 34578


Q ss_pred             EEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcc
Q 021459          111 FCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLI  188 (312)
Q Consensus       111 ~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (312)
                      .+++|++. ++.+++++.||+|++||+.+++.+..+..|...|++++|+| ++.+|++|+.|+.|++||++++..+..+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            89999874 68999999999999999999998889999999999999997 78899999999999999999888776654


Q ss_pred             cCCCCcEEEEEE-CCCCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          189 DDKDPAVSFAKF-SPNGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       189 ~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      . . ..+..+.| ++++.+|++|+.|+.|++||+++.+ .+..+.+|......+.  +  .++..|++++.|+.|++||+
T Consensus       616 ~-~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~--f--~~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        616 T-K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR--F--VDSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             c-C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE--E--eCCCEEEEEECCCEEEEEeC
Confidence            3 2 34666667 5679999999999999999998765 4556667776654443  2  25779999999999999999


Q ss_pred             Cc------hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          267 QQ------KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       267 ~~------~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..      ...+..+.+|...+..++|+|++++|++++.|  ++|++|+.
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--~~v~iw~~  737 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--NEVFVYHK  737 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--CEEEEEEC
Confidence            74      24567788999999999999999999999955  58999985

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-32  Score=227.93  Aligned_cols=273  Identities=25%  Similarity=0.449  Sum_probs=222.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec-
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG-  105 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~-  105 (312)
                      -+.|+ ..+.||.| ....|.+|+..++........+...|+++.|+++|.+|++|..+|.|.|||.... +.+..+.+ 
T Consensus       182 lldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~  258 (484)
T KOG0305|consen  182 LLDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGS  258 (484)
T ss_pred             Hhhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCC
Confidence            35677 34556655 3458999999988865555555889999999999999999999999999998774 44666677 


Q ss_pred             ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459          106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL  184 (312)
Q Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (312)
                      |...|-+++|+  +..+.+|+.++.|..+|++..+.... +..|...|..++|++|+.++++|+.|+.+.|||.......
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            99999999998  57899999999999999998776554 7789999999999999999999999999999999766666


Q ss_pred             eEcccCCCCcEEEEEECCC-CCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE-eecCCe
Q 021459          185 KTLIDDKDPAVSFAKFSPN-GKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS-GSEDNC  260 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~  260 (312)
                      ..+. .+...+..++|+|- ...||+|  +.|+.|++||..++..+........   .....+.....+++.+ |-.++.
T Consensus       337 ~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---VcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  337 FTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---VCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             EEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc---eeeEEEcCCCCEEEEecCCCCCc
Confidence            5554 45677888999995 4577776  5799999999999988776543322   2233444444455544 556789


Q ss_pred             EEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          261 VYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       261 i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |.||+..+...+..+.+|...|..++++|++..+++|+  +|.++++|++
T Consensus       413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a--~DETlrfw~~  460 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA--ADETLRFWNL  460 (484)
T ss_pred             EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec--ccCcEEeccc
Confidence            99999999999999999999999999999999999999  5579999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=222.05  Aligned_cols=252  Identities=24%  Similarity=0.463  Sum_probs=211.0

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ++..+++.+|..+|..+.||||.++|++++.+..+.+||+.++.....+. ++...+.+.+|.|||..+++|+.|+.+..
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM  338 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence            55678999999999999999999999999999999999999998877664 34678999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           91 WDARTPFDCLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ||++..  .+...++. ...|.+++..+||+++++...|..|++++.++........ ...+++++.++.+++++++--.
T Consensus       339 wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  339 WDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQ  415 (519)
T ss_pred             ecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcc
Confidence            998753  23344432 2458899999999999999999999999988765544333 3458999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCc--EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPA--VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +..+++||+.+...++.+.++....  +..+.-..+..++++|+.|+.|+||+..+++.+..+.+|....+|+  .+.+.
T Consensus       416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV--swNP~  493 (519)
T KOG0293|consen  416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV--SWNPA  493 (519)
T ss_pred             cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE--ecCCC
Confidence            9999999999888777776655433  3333223456899999999999999999999999999999877776  45666


Q ss_pred             CCcEEEEeecCCeEEEEECCc
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      +..++|+|++||+|+||-...
T Consensus       494 ~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CHHHhhccCCCCeEEEecCCc
Confidence            788999999999999997753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.6e-31  Score=216.48  Aligned_cols=247  Identities=38%  Similarity=0.712  Sum_probs=212.5

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ....+..|...+..+.|+|+++++++++.+|.+++|+..+++.+..+..|...|.++.|+++++++++++.++.+.+||+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            34566789999999999999999999999999999999988888888889989999999999889998888999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .+. +....+..|...+.++.|+|++.++++++.++.|++||+++++....+..|...+.++.|+|+++.+++++.++.+
T Consensus       123 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         123 ETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             CCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            864 4566667788899999999998888888889999999999888888888888899999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      ++||++.++....+.. +...+..+.++|++.++++++.++.|++||..+++....+..+......   ....+++.+|+
T Consensus       202 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~  277 (289)
T cd00200         202 KLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS---LAWSPDGKRLA  277 (289)
T ss_pred             EEEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE---EEECCCCCEEE
Confidence            9999998776665533 3446778889999888888888999999999988887777766554333   33446688999


Q ss_pred             EeecCCeEEEEE
Q 021459          254 SGSEDNCVYVWD  265 (312)
Q Consensus       254 ~~~~dg~i~iwd  265 (312)
                      +++.||.|++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-32  Score=232.30  Aligned_cols=246  Identities=25%  Similarity=0.524  Sum_probs=205.1

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..|..|.++|..+.|+|++.++++||.|..|+||++.+.+++.++.+|-+.|..+.|++.-.+++++|+|.+|+||+.++
T Consensus        45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC--------C---------------------eEEEEee
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT--------G---------------------KCTRVIR  146 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~--------~---------------------~~~~~~~  146 (312)
                      . .++..+.||...|.|..|+|....++++|.|-+|++||+..        +                     -....+.
T Consensus       125 r-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  125 R-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             C-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence            4 78889999999999999999999999999999999999842        1                     0123567


Q ss_pred             ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459          147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK  225 (312)
Q Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  225 (312)
                      +|...|+-++|+|.-.++++|+.|+.|++|.+...+. .......+...++++-|+|..+.+++.+.|+.|++||+...+
T Consensus       204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence            8888999999999999999999999999998865432 222233455668888899999999999999999999999888


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .++++....+.-+++..   .|..+++++|.+.| +.+|.+
T Consensus       284 ~v~tfrrendRFW~laa---hP~lNLfAAgHDsG-m~VFkl  320 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAA---HPELNLFAAGHDSG-MIVFKL  320 (1202)
T ss_pred             ceeeeeccCCeEEEEEe---cCCcceeeeecCCc-eEEEEE
Confidence            88888765555555443   34555565554444 334433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.8e-34  Score=228.27  Aligned_cols=251  Identities=22%  Similarity=0.427  Sum_probs=211.1

Q ss_pred             cceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           54 LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        54 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      .+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|..++|++++..+++++.|+.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            355678899999999999999 8999999999999999999887789999999999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      +||+++|+++..+.. ...++++.|+|++ +.|++|+.|+.|+.||+++++.+.++- .+-..+..+.|-++|+.+++.+
T Consensus       284 lwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceEeeec
Confidence            999999999888754 4567999999988 899999999999999999999776653 4455677788999999999999


Q ss_pred             cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---heeecccCCc--cceEEEE
Q 021459          212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---TMIQKLDGHT--DSVISVT  286 (312)
Q Consensus       212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l~  286 (312)
                      .|+.++||+.+.+..++.+......  .+.+....|++.+++.-+.|+.|.+|.+...   ...+.++||.  +--..+.
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            9999999999887766554332211  1222344588999999999999999987543   2345678885  4567788


Q ss_pred             EcCCCceEEEeeecCCeeEEEEee
Q 021459          287 CHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       287 ~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |||||.+|++|.  +++.+.+|++
T Consensus       440 fSpDG~~l~SGd--sdG~v~~wdw  461 (503)
T KOG0282|consen  440 FSPDGRTLCSGD--SDGKVNFWDW  461 (503)
T ss_pred             EcCCCCeEEeec--CCccEEEeec
Confidence            999999999988  4568899986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.7e-31  Score=201.07  Aligned_cols=273  Identities=18%  Similarity=0.292  Sum_probs=215.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      ..++.|+.++|+|....|+.++.||++++|+.....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.. 
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-   87 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-   87 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence            357889999999999988889999999999998876655444 889999999987 45688999999999999987643 


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (312)
                       ..+..|...+.|+.+.+....+++|++|++|++||.+.......+.. ...|.++..  .++.|++|+.+..+.+||++
T Consensus        88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence             34556999999999999889999999999999999997554444433 337888766  46789999999999999999


Q ss_pred             CCceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC----cEEEEEEccC------CceeEEEEEEEccC
Q 021459          180 EGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG----KFLKIYTGHT------NKKYCITSTFSVTN  248 (312)
Q Consensus       180 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~  248 (312)
                      +.....+. .......+.++++-|++.-.++++.||.|.+=.+...    +....+..|.      .-.+++....+.|-
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            86543321 2223456778888888888999999999987444333    2222334343      23456665555566


Q ss_pred             CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459          249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      ...|+||+.||.|.+||+.+++.+..+......|..++|+-+|..||+++.
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            678999999999999999999999999888888999999999999998874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-32  Score=231.87  Aligned_cols=247  Identities=23%  Similarity=0.458  Sum_probs=197.6

Q ss_pred             EEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC--------------------------------C--------
Q 021459           58 HRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIWDART--------------------------------P--------   96 (312)
Q Consensus        58 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~--------------------------------~--------   96 (312)
                      ..+. .|.++|.++.|++||+|||+|+.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 7999999999999999999999999999997643                                0        


Q ss_pred             -------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459           97 -------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus        97 -------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
                                         .+++..+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+|+..|. |..-|+|++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence                               0112346689999999999875 699999999999999999999998874 8899999999


Q ss_pred             cc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-
Q 021459          158 NR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-  235 (312)
Q Consensus       158 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-  235 (312)
                      +| |.++|++|+-|+.++||++...+...  ..+-...++.+++.|+|+..++|+.+|..++|+....+.......+.. 
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~--W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVD--WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEe--ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            99 88999999999999999998776543  223346789999999999999999999999999887765543321111 


Q ss_pred             -----ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          236 -----KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       236 -----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                           ........+.+.+..-+++.+.|-.|+|+|.++..++.+++|+..  .=..-.|+.+|+++++++  .|..|+||
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s--eDs~VYiW  573 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS--EDSWVYIW  573 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee--cCceEEEE
Confidence                 111233344444555566778999999999999999999988643  334557899999999999  45799999


Q ss_pred             ee
Q 021459          309 VQ  310 (312)
Q Consensus       309 ~~  310 (312)
                      +.
T Consensus       574 ~~  575 (712)
T KOG0283|consen  574 KN  575 (712)
T ss_pred             eC
Confidence            86

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.1e-31  Score=227.56  Aligned_cols=214  Identities=17%  Similarity=0.336  Sum_probs=177.7

Q ss_pred             eecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCe
Q 021459           17 TLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSDS-HYICSASDDRT   87 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~   87 (312)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++|++...       ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4679999999999999 8899999999999999998754       3456788999999999999985 69999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEEE
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIVS  166 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~  166 (312)
                      |++||++++ ..+..+.+|.+.|.+++|+|+++.|++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++
T Consensus       150 VrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        150 VNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            999999875 456677889999999999999999999999999999999999988888888754 346778888777776


Q ss_pred             ee----CCCeEEEEeCCCCceeeE-cccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEE
Q 021459          167 GS----HDGTCKIWDAGEGACLKT-LIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       167 ~~----~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~  231 (312)
                      ++    .|+.|++||+++...... ...+....+....|++++++|++++ .|+.|++||+.+++.+....
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            54    478999999987543222 2222334455667899999998887 59999999999888765543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=212.23  Aligned_cols=281  Identities=22%  Similarity=0.358  Sum_probs=239.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ..+.++...|..+.++||+.|..+.++|....+.+..+.||...|+++.++|+...+++++.|..|++|...... ....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence            477888888887899999999999999999999999999999999999999999999999999999999876543 3455


Q ss_pred             eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ...|..+|..+..+|.+++|++++.||+.-+.|++++..+.....  ....+++.+|+|||..|.+|..|+.+++||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            677999999999999999999999999999999999987765543  234589999999999999999999999999998


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      ......+.+ +...+..+.|+.+|-+|+++..|+.|++||++..+..+.+......  .+......+.|.+|+.++.|=+
T Consensus       379 ~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  379 QTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGSDLQ  455 (506)
T ss_pred             ccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc--cceeEEEcCCCCeEEeecceeE
Confidence            887777655 6778999999999999999999999999999998877777654432  2222333467899999988877


Q ss_pred             EEEEEC--CchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          261 VYVWDL--QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       261 i~iwd~--~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      |++++-  .+.+.+..+..|.+...++.|..+.++++++|.|  ..++++-
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd--~~l~~~a  504 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD--AILRLYA  504 (506)
T ss_pred             EEEEecccccceeeehhhhcccccceeeecccceEEeeccch--hheEEee
Confidence            777764  3567788888899899999999999999999976  4677654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-32  Score=208.95  Aligned_cols=293  Identities=22%  Similarity=0.403  Sum_probs=236.2

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .+..+.+.||++.|-.++-....+.+.+++.|.+.++|.++++.++..+.+|.+.|+++.|++.+.++++++.|++..||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            35566789999999999988888899999999999999999999999999999999999999999999999999999999


Q ss_pred             eC----CCC-----------------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           92 DA----RTP-----------------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        92 d~----~~~-----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      ..    +.+                                   ..++..+.+|.+.|.++.|-..++.++++++|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            62    000                                   012345778999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      +||++++..+..+.+|....+.+.-+|..+++++.+.|.+.++||.+..-.....+..+...+....|.-+ ..+++|+.
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD  376 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD  376 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC
Confidence            99999999999999999999999999999999999999999999998644333333445556777778765 46889999


Q ss_pred             CCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee----cccCCccceEEEEE
Q 021459          213 DSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ----KLDGHTDSVISVTC  287 (312)
Q Consensus       213 d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~  287 (312)
                      |.+|++||+++-+. +..+.... ..+.+..+   ..+..++.--++..|++||++...+..    .-++|...|.|++|
T Consensus       377 DrTvKvWdLrNMRsplATIRtdS-~~NRvavs---~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIRTDS-PANRVAVS---KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             CceEEEeeeccccCcceeeecCC-ccceeEee---cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence            99999999987653 44443222 22223222   345578888889999999997654322    23589999999999


Q ss_pred             cCCC--ceEEEeeecCCeeEEEEeec
Q 021459          288 HPTE--NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       288 ~p~~--~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ..+.  +-|.++|+|  .++.-|.++
T Consensus       453 ~eehp~cnLftcGFD--R~v~gW~in  476 (481)
T KOG0300|consen  453 LEEHPACNLFTCGFD--RMVAGWKIN  476 (481)
T ss_pred             cccCccccccccccc--ceeeeeEec
Confidence            6443  568889977  688889874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-33  Score=207.71  Aligned_cols=248  Identities=27%  Similarity=0.463  Sum_probs=216.9

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      +-++.+|++.|-+..+..+..+.|+++.|-+-+|||..++..++.+. |+.-|..++|+.|.++|++|+.++.+++||++
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            34789999999999999999999999999999999999999888765 88899999999999999999999999999999


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      .+......+.+|.+.|..+-|-...+.++++..|++|++||.++++.++.+.. +.+|+++.++++|+++.++ ..+.|.
T Consensus       131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~  208 (334)
T KOG0278|consen  131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVK  208 (334)
T ss_pred             CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeE
Confidence            88777888899999999999988888999999999999999999998888764 5689999999999876554 556899


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE-EccCCceeEEEEEEEccCCcEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY-TGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      +||..+-..++.+.  -...+..+.++|+...+++|+.|..++.||+.+++.+..+ .+|..+..|+.   +.|+|+..+
T Consensus       209 Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr---FSPdGE~yA  283 (334)
T KOG0278|consen  209 FWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR---FSPDGELYA  283 (334)
T ss_pred             Eeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE---ECCCCceee
Confidence            99998877666553  2345777889999999999999999999999999988886 78888766653   458999999


Q ss_pred             EeecCCeEEEEECCchh
Q 021459          254 SGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~  270 (312)
                      +|++||+|++|....++
T Consensus       284 sGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  284 SGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCCceEEEEEecCCC
Confidence            99999999999876543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.2e-31  Score=200.02  Aligned_cols=246  Identities=22%  Similarity=0.411  Sum_probs=205.2

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEEEEe
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLRIWD   92 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~wd   92 (312)
                      .-.+..|..+|++++.  ++.++|+|+.|.+|+|||......+..+..|.+.|+++.|.++-.  .|++|++||.|.+|+
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            3456789999999997  589999999999999999999988889999999999999998764  899999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      ... .+++..+++|.+.|..++.+|.+++.++.+.|+.+++||+-+|+.-....-.. ....+.|+|.|.+|+.+..+ .
T Consensus       114 ~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~  190 (362)
T KOG0294|consen  114 VGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-K  190 (362)
T ss_pred             cCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-E
Confidence            876 68899999999999999999999999999999999999999887655544322 23458999999999988876 6


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      |-+|.+.+.....++...  ..+.++.|. ++..|++|+.|+.|++||..+......+.+|......+.. +..+.+.+|
T Consensus       191 i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~-~~~~~~~~l  266 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS-YTNPEHEYL  266 (362)
T ss_pred             EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE-EecCCceEE
Confidence            889988877665555332  223334343 5678999999999999999888888888899887655542 344667899


Q ss_pred             EEeecCCeEEEEECCch
Q 021459          253 VSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~  269 (312)
                      +|++.||.|++||+...
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999999765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.9e-31  Score=226.75  Aligned_cols=248  Identities=32%  Similarity=0.593  Sum_probs=211.1

Q ss_pred             ceee-ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           14 HFKT-LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        14 ~~~~-~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      .+.. +.+|.+.|.++++...++.|++|+.|+++++||..++++...+.+|...|.++...  ..++++|+.|.+|++|+
T Consensus       240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~  317 (537)
T KOG0274|consen  240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWD  317 (537)
T ss_pred             EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEe
Confidence            3444 89999999999998888999999999999999999999999999999999888764  45788889999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      ++++ ..+..+.+|.+.|.++..+  +..+++|+.|++|++||+.++++++.+++|...|+++.+.+. ..+++|+.|+.
T Consensus       318 v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~  393 (537)
T KOG0274|consen  318 VTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT  393 (537)
T ss_pred             ccCc-ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence            9975 6677888899999999987  789999999999999999999999999999999999988654 79999999999


Q ss_pred             EEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-CCceeEEEEEEEccCCc
Q 021459          173 CKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCITSTFSVTNGK  250 (312)
Q Consensus       173 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (312)
                      |++||+++. +++..+..+. ..+..  ....+++|++++.|++|++||..+++.++.+.++ ......+.     ....
T Consensus       394 IkvWdl~~~~~c~~tl~~h~-~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-----~~~~  465 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQGHT-SLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA-----LGKE  465 (537)
T ss_pred             eEeecCCchhhhhhhhcCCc-ccccc--cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEee-----cCcc
Confidence            999999998 7777665433 33322  3446789999999999999999999999998874 33322221     1146


Q ss_pred             EEEEeecCCeEEEEECCchheeecc
Q 021459          251 YIVSGSEDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~  275 (312)
                      .+++++.||.+.+||+++++....+
T Consensus       466 ~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  466 EILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eEEEEecCCeeEEEecccCchhhhh
Confidence            7889999999999999998887765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4e-31  Score=211.23  Aligned_cols=279  Identities=24%  Similarity=0.401  Sum_probs=227.9

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE----EE-------------e-eeccCCEEEEEEccCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV----HR-------------F-VGHSEGISDLAWSSDS   76 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~   76 (312)
                      ++.+..|.-+|.+++++|+..++++++.+++|.=|++.+++..    .+             - +.|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            6677789999999999999999999999999999998776532    01             1 2677889999999999


Q ss_pred             CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEE
Q 021459           77 HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH  156 (312)
Q Consensus        77 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  156 (312)
                      ++|++|+.|..|.||+.++. +.++.+++|.+.|.+++|-...+.+++++.|++|++|++.....+.++.+|+..|..+.
T Consensus       215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            99999999999999999885 55777899999999999988888999999999999999998888888899999999999


Q ss_pred             EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-cCC
Q 021459          157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTN  235 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~  235 (312)
                      ...-++.+-+|+.|+++++|++.....+  +.......+.++++-. ...+++|+.+|.|.+|++...+.+.+... |..
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             hhcccceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            8888888888889999999999654332  2223344566666654 45789999999999999988887765432 211


Q ss_pred             --------ceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCccceEEEEEcCCCceEEEee
Q 021459          236 --------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       236 --------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                              ....++.....+..+++++|+.+|.|++|-+..+    +++..++ -.+.|++|+|++++.++++|-
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence                    1124566666688899999999999999998765    3444444 567899999999999777664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.2e-31  Score=206.44  Aligned_cols=248  Identities=27%  Similarity=0.489  Sum_probs=202.5

Q ss_pred             eceeeecccccceEEEEECCCC---CEEEEEeCCCeEEEEeCCCcce----EEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDG---TLLASASLDKTVIIWSASSLAL----VHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      +...++.+|.++|..++|....   ..+++++.|.++++|..+.+..    +....||...|.+++..+++..+++|+.|
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D  214 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD  214 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence            4567889999999988875333   3699999999999998876543    34446999999999999999999999999


Q ss_pred             CeEEEEeCCCC------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459           86 RTLRIWDARTP------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC  141 (312)
Q Consensus        86 ~~v~~wd~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  141 (312)
                      .++.+|+..+.                        ..++.++.||.+.|.++.|.+ ...+++++.|.+|+.||+.+++.
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~  293 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL  293 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence            99999993210                        123567889999999999987 77899999999999999999988


Q ss_pred             EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc--eeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEE
Q 021459          142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKL  218 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v  218 (312)
                      ...+.. ..++.++..+|...++++|+.|..+++||.+++.  .....+..+..-+..+.|+|... +|++++.|+++++
T Consensus       294 ~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  294 KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             eeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence            776654 4578999999999999999999999999998753  33333333455788889999665 6778899999999


Q ss_pred             EEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          219 WNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       219 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      ||++..+ .+..+.+|..+..++.  +  .++..+++|+.|..|+++.-
T Consensus       373 WDvRS~k~plydI~~h~DKvl~vd--W--~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  373 WDVRSTKAPLYDIAGHNDKVLSVD--W--NEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEeccCCCcceeeccCCceEEEEe--c--cCCceEEeccCcceEEEecc
Confidence            9999887 7888888877655443  2  46789999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-30  Score=191.65  Aligned_cols=244  Identities=24%  Similarity=0.445  Sum_probs=204.4

Q ss_pred             eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459           56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE  135 (312)
Q Consensus        56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd  135 (312)
                      .+..+.+++++|..+.|+-+|+|.++|+.|++|++|+...+ .++++..+|...|..++.+.|+..+++|+.|..|.+||
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34567789999999999999999999999999999998765 67899999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc--eeeEcccCCCCcEEEEEECCCCCEEEEEecC
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGKFILVGTLD  213 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
                      +++|+..+.+.+|...|+.+.|+.+...+++|+.|..+++||-++..  .+..+ .+....+..+  .-.+..+++|+.|
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-dea~D~V~Si--~v~~heIvaGS~D  164 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-DEAKDGVSSI--DVAEHEIVAGSVD  164 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-hhhcCceeEE--EecccEEEeeccC
Confidence            99999999999999999999999999999999999999999998753  23322 2222334443  3356789999999


Q ss_pred             CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEE--EcCCC
Q 021459          214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT--CHPTE  291 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~~p~~  291 (312)
                      |+++.||++.|+...-+.+++     +++....+++...+.++-|+++++-|-.++++++.++||...=..+.  +....
T Consensus       165 GtvRtydiR~G~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             CcEEEEEeecceeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence            999999999998776666553     33334457889999999999999999999999999999976544444  45556


Q ss_pred             ceEEEeeecCCeeEEEEee
Q 021459          292 NKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       292 ~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..++++|.|  +-|.+|+.
T Consensus       240 thV~sgSED--G~Vy~wdL  256 (307)
T KOG0316|consen  240 THVFSGSED--GKVYFWDL  256 (307)
T ss_pred             eeEEeccCC--ceEEEEEe
Confidence            678888865  58999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=199.36  Aligned_cols=242  Identities=21%  Similarity=0.423  Sum_probs=198.6

Q ss_pred             ccceEEEEECCC-CCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCce
Q 021459           22 SRAVSCVKFSND-GTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        22 ~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      .+.+..++|++. .+.+++++.||++++||... ..++..++.|...|.++.|++ .++.+++++-|++|++|+...+ .
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~  138 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-N  138 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-c
Confidence            567889999984 56889999999999999653 457888999999999999998 4667888899999999998765 5


Q ss_pred             eeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021459           99 CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIW  176 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw  176 (312)
                      .+.++.+|...|....|+| .++.+++++.|+++++||++..-....+..|...+.++.|+. +...+++|+.|+.|+.|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            6788999999999999999 468999999999999999986544455889999999999998 66788999999999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      |+++-+.....+..+...+..+.|+|.. ..|++++.|-++++||...+. .+..+..|++-..  ..-++..++.++|+
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~--g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC--GLDWSLFDPGQVAS  296 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe--ccccccccCceeee
Confidence            9998654433446677889999999965 578889999999999987554 3445555555332  23344456789999


Q ss_pred             eecCCeEEEEEC
Q 021459          255 GSEDNCVYVWDL  266 (312)
Q Consensus       255 ~~~dg~i~iwd~  266 (312)
                      .+-|+.+++|+.
T Consensus       297 ~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  297 TGWDELLYVWNP  308 (311)
T ss_pred             cccccceeeecc
Confidence            999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.2e-32  Score=209.97  Aligned_cols=281  Identities=20%  Similarity=0.313  Sum_probs=223.8

Q ss_pred             eeecccccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           16 KTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ..|.+|.+.|.|++=+|.. ..+++|+.||.|++||+...+++..++.|.+.|..|++..  ..++++++|++|+.|.++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            4578999999999999977 7899999999999999999999999999999999999987  667888999999999877


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEeeCCCeE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTC  173 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i  173 (312)
                      .+  .+.++.+ ...+..+.-+..++.++|+|.+  |.+||.+...++..+......+.++.|+|... .|+++..|+.|
T Consensus       138 ~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  138 GP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             CC--cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            53  3444432 2345566666667788988864  99999988888888888778899999999665 56677799999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      .+||++++..++.+...-  ....++|+|.+-.+++++.|..++.||.+.-. .+.++.+|...   +......|.|.-+
T Consensus       213 vLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---V~dVdfsptG~Ef  287 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---VMDVDFSPTGQEF  287 (433)
T ss_pred             EEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhccccee---EEEeccCCCcchh
Confidence            999999988776654321  23446799988888999999999999987643 45666666554   3333445779999


Q ss_pred             EEeecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++||.|.+|+||..+.+..-..+ ..-.+.|.||.|+-|.+++++||.|  ++||+|..
T Consensus       288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd--~nvRlWka  344 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD--GNVRLWKA  344 (433)
T ss_pred             ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC--cceeeeec
Confidence            99999999999998765432222 1123579999999999999999955  69999975

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-30  Score=215.94  Aligned_cols=242  Identities=26%  Similarity=0.455  Sum_probs=213.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      ++..|+++.|+++|.+|+.|..+|.|.|||....+.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++.....
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            388999999999999999999999999999999888888888 99999999998  678999999999999999887655


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEe--eCCCeEEEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSG--SHDGTCKIW  176 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~--~~d~~i~iw  176 (312)
                      ...+.+|...|..+.|++|++++++|+.|+.+.|||....+.+..+..|..+|..++|+| ...+||+|  +.|+.|++|
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            556888999999999999999999999999999999988888888899999999999999 55678875  468999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      |..++..+..+.  ....++.+.|++..+-|+++  ..++.|.||++.+.+.+..+.+|...+..   ....|++..+++
T Consensus       374 n~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~---la~SPdg~~i~t  448 (484)
T KOG0305|consen  374 NTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY---LALSPDGETIVT  448 (484)
T ss_pred             EcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE---EEECCCCCEEEE
Confidence            999998887763  45678999999998777764  56789999999998888999999887433   344588999999


Q ss_pred             eecCCeEEEEECCch
Q 021459          255 GSEDNCVYVWDLQQK  269 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~  269 (312)
                      |+.|.++++|++...
T Consensus       449 ~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  449 GAADETLRFWNLFDE  463 (484)
T ss_pred             ecccCcEEeccccCC
Confidence            999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-31  Score=221.90  Aligned_cols=284  Identities=22%  Similarity=0.466  Sum_probs=230.6

Q ss_pred             ccccceE---EEEEC-CCCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459           20 AHSRAVS---CVKFS-NDGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        20 ~h~~~v~---~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      .|...|.   .+..+ |.+++|+|||.||.|++|+.....      .+.+++.|.+.|++++...+++.|+++|.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3555666   55665 466789999999999999875421      3667888999999999999999999999999999


Q ss_pred             EEeCCCCc-eeeeeeecccccEEEEEE-ecCCCEEEEeecCCcEEEEEcCCCeE--E--------EEee-ecCcCeEEEE
Q 021459           90 IWDARTPF-DCLKTLRGHSDFVFCVNF-NPQSNLIVSGSFDESIRIWEVKTGKC--T--------RVIR-AHSMPVTSVH  156 (312)
Q Consensus        90 ~wd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~--~--------~~~~-~~~~~v~~~~  156 (312)
                      +|+..... -+..++..|.+.|.|+++ .++.+.+++||.|+.|.+||++++..  +        ..+. ++..+|++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            99987643 567788899999999999 78888999999999999999997732  1        1222 5677899999


Q ss_pred             EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459          157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK  236 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  236 (312)
                      -.+.|..+++|+..+.+++||.++.+.+..+.+ +...+..+..++||..+++++.||+|++||+..++++.++..|...
T Consensus       179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             cCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            999999999999999999999999988877764 5567888889999999999999999999999999999999999887


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .+.+.+.   ++-..+.+|+.||.|..=|+++......+.....+|..+..+.+.+.+=+++.|  ..|+=|.
T Consensus       258 VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd--s~I~rW~  325 (735)
T KOG0308|consen  258 VWALQSS---PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD--SSIKRWK  325 (735)
T ss_pred             eEEEeeC---CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc--ccceecC
Confidence            6655443   566789999999999999998864444444456677777777655554444544  3566664

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-30  Score=194.97  Aligned_cols=242  Identities=23%  Similarity=0.421  Sum_probs=199.9

Q ss_pred             EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC--EEEEeecCCcEEEE
Q 021459           57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIW  134 (312)
Q Consensus        57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~~w  134 (312)
                      +..+..|..+|++++.  ++.++++|+.|-+|++||+... ..+..+-.|.+.|.++.|.+...  .|++|+.||.|.+|
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            4566789999999998  5889999999999999999874 44666777999999999998764  89999999999999


Q ss_pred             EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      +...-.++..+++|...|+.++.+|.+++-++.+.|+.+++||+-+++.-....-.+  ....+.|+|.|.+++.+..+ 
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-  189 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-  189 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-
Confidence            999889999999999999999999999999999999999999998887544332222  23447899999998888765 


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE--cCCCc
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC--HPTEN  292 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~p~~~  292 (312)
                      .|-+|.+.+......+... ....|+.    ..++..|++|.+|+.|.+||.........+.+|...|..+.+  .|.+.
T Consensus       190 ~i~i~q~d~A~v~~~i~~~-~r~l~~~----~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENP-KRILCAT----FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             EEEEEecccHhHhhhhhcc-ccceeee----ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence            5888988766554433322 2233332    246789999999999999999988888999999999999984  57788


Q ss_pred             eEEEeeecCCeeEEEEeec
Q 021459          293 KIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|+|+|.|  +.|++|+++
T Consensus       265 ~lvTaSSD--G~I~vWd~~  281 (362)
T KOG0294|consen  265 YLVTASSD--GFIKVWDID  281 (362)
T ss_pred             EEEEeccC--ceEEEEEcc
Confidence            99999966  489999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-30  Score=208.62  Aligned_cols=243  Identities=25%  Similarity=0.463  Sum_probs=199.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDART   95 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ++.-.++.|.++.|..||+++|.|+..|.|+|+|..+...+..+.+|+.+|..+.|+|+ +..+++|++|+.+++||+.+
T Consensus        63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            34456788999999999999999999999999997766666778899999999999996 56888999999999999988


Q ss_pred             CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      ... ...+.+|.+.|.|.+++|.. +.++||++||.|++||++.......--.|..||..+.+-|.|..+++++.+ .++
T Consensus       143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vk  220 (487)
T KOG0310|consen  143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVK  220 (487)
T ss_pred             cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEE
Confidence            653 55788999999999999965 579999999999999999874322223589999999999999999988765 899


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      +||+-+|.........+...++++++..++..|++++.|+.|++||..+-+.+..+.-. .+   +......+++..++.
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~p---vLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GP---VLSIAVSPDDQTVVI  296 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cc---eeeEEecCCCceEEE
Confidence            99998665544444446677999999999999999999999999998777777665532 22   333344578889999


Q ss_pred             eecCCeEEEEE
Q 021459          255 GSEDNCVYVWD  265 (312)
Q Consensus       255 ~~~dg~i~iwd  265 (312)
                      |-.||.+.+=+
T Consensus       297 GmsnGlv~~rr  307 (487)
T KOG0310|consen  297 GMSNGLVSIRR  307 (487)
T ss_pred             ecccceeeeeh
Confidence            99999887763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=3.2e-28  Score=178.44  Aligned_cols=286  Identities=24%  Similarity=0.397  Sum_probs=223.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC------c---------ceEEEeeeccCCEEEEEEccCCCeEEEEc
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS------L---------ALVHRFVGHSEGISDLAWSSDSHYICSAS   83 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~------~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   83 (312)
                      -.-...|.+++|+|.|.+-+.|++.+++||-....      .         -+..+.+.|.+.|++.+|+|+|++|++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            34567899999999999999999999999864321      1         11234456889999999999999999999


Q ss_pred             CCCeEEEEeCCCCce----eeeeeecccccEEEEEEecC----CCEEEEeec-CCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           84 DDRTLRIWDARTPFD----CLKTLRGHSDFVFCVNFNPQ----SNLIVSGSF-DESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      .|+.|++.-.+...-    .-..+.-|++.|..++|-.+    +..|++++. |-.|++-|...|+....+.+|..-|..
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999975543111    11234458899999999654    346666553 445777788899999999999988877


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      + ++=++-.+++|+.|.+|++||++-..++..+-..      ....+..++.+|.|++|++|-.|....+||++.++.+.
T Consensus       189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence            6 3446789999999999999999988777655332      12467788999999999999999999999999999999


Q ss_pred             EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---he-eecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---TM-IQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~-~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      .+..|.....|+   .+.|...+|++++.|..|++-|++..   ++ +.....|.+.+..+.|||..-.+++.+.|  .+
T Consensus       268 ~f~phsadir~v---rfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad--kt  342 (350)
T KOG0641|consen  268 RFHPHSADIRCV---RFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD--KT  342 (350)
T ss_pred             eeCCCccceeEE---EeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc--ce
Confidence            998888775555   34467789999999999999998642   11 22345688999999999999888888855  68


Q ss_pred             EEEEee
Q 021459          305 VRVWVQ  310 (312)
Q Consensus       305 v~iw~~  310 (312)
                      +-+|-.
T Consensus       343 ~tlwa~  348 (350)
T KOG0641|consen  343 ATLWAL  348 (350)
T ss_pred             EEEecc
Confidence            888865

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=8.8e-30  Score=202.27  Aligned_cols=252  Identities=21%  Similarity=0.341  Sum_probs=209.1

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .+.+.++.||...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.|+...+.
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence            35567889999999999999999999999999999999988776667778899999999999999999999999999999


Q ss_pred             eCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           92 DARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        92 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      |++++....+... ...-.+.+.+|+|||..|.+|..||.|++||+.++.....|.+|..+|..++|+.+|-+++++..|
T Consensus       331 d~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  331 DISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD  410 (506)
T ss_pred             EccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence            9988754333221 122357899999999999999999999999999999888999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EEEEEccCCceeEEEEEEEccC
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      +.|++||+|.-+..+++.......+..+.|++.|.+|+.++.|=+|++++-.+...  +..+..|.+...+   ..+...
T Consensus       411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~---v~Fg~~  487 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTG---VRFGEH  487 (506)
T ss_pred             CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccce---eeeccc
Confidence            99999999988877777665555677888999999999998887777776544443  3334444433222   333456


Q ss_pred             CcEEEEeecCCeEEEEEC
Q 021459          249 GKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~  266 (312)
                      ..++++++.|..++++-+
T Consensus       488 aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  488 AQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceEEeeccchhheEEeec
Confidence            678999999998888754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.9e-29  Score=210.90  Aligned_cols=282  Identities=26%  Similarity=0.441  Sum_probs=229.1

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE--EEeeeccCCEEE-EEEcc-CCCeEEEEcCCC
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV--HRFVGHSEGISD-LAWSS-DSHYICSASDDR   86 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~   86 (312)
                      .|+....+.+|+..|..++..+. ..++++|.||++++|+-...+.+  +.+.+|.+-|.. +++.+ ++-.|++|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            46777889999999999887654 47889999999999987665543  346667777765 88876 455699999999


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      .+.+|..... .++..+++|...|.|++...++. +++||+|.++++|-.  +++...+++|..+|+.++.-|.+ .+++
T Consensus        82 ~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   82 TIIVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             eEEEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEe
Confidence            9999998764 56788999999999999877776 999999999999965  44556689999999999999987 7899


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      |+.|.+|++|.-  ++.++++.+ |...+..+++-+++ .+++++.||.|+.|++ +++.+..+.+|+...+++..   .
T Consensus       157 gsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~---~  228 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM---A  228 (745)
T ss_pred             ccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe---c
Confidence            999999999975  566667665 55667777777765 4678889999999998 78888889999988887762   3


Q ss_pred             cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .++..++++++|++++||+..  ++.+.+.-....|+++.+-++| -+++|+.|  +.||||-.+
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SD--G~VrVfT~~  288 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSD--GRVRVFTVD  288 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccC--ceEEEEEec
Confidence            567799999999999999876  6666666556689999998876 56667755  589999764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3e-28  Score=210.37  Aligned_cols=225  Identities=17%  Similarity=0.274  Sum_probs=172.5

Q ss_pred             EcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCe--------EEEEeeecCcCe
Q 021459           82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGK--------CTRVIRAHSMPV  152 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~v  152 (312)
                      |+.++.+++|+.... ..+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++.        ....+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            566788999987653 456778899999999999997 7899999999999999997642        234567899999


Q ss_pred             EEEEEccCCCE-EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          153 TSVHFNRDGSL-IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       153 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .+++|+|++.. +++++.|+.|++||+++++....+.  +...+..+.|+|+|.+|++++.|+.|++||+++++.+..+.
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            99999998875 4689999999999999887665553  23568889999999999999999999999999999888888


Q ss_pred             ccCCceeEEEE--EEEccCCcEEEEeecCC----eEEEEECCc-hheeeccc--CCccceEEEEEcCCCceEEEeeecCC
Q 021459          232 GHTNKKYCITS--TFSVTNGKYIVSGSEDN----CVYVWDLQQ-KTMIQKLD--GHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       232 ~~~~~~~~~~~--~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      +|.........  ....+++.+|++++.|+    .|+|||++. ...+..+.  .+.+.+.-.-..+++.++++|+  ||
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk--GD  284 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK--GD  284 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE--CC
Confidence            88765322211  11235677888877664    799999985 44444432  2233333333345577888887  77


Q ss_pred             eeEEEEeec
Q 021459          303 RTVRVWVQD  311 (312)
Q Consensus       303 ~~v~iw~~~  311 (312)
                      ++||+|++.
T Consensus       285 ~tIr~~e~~  293 (568)
T PTZ00420        285 GNCRYYQHS  293 (568)
T ss_pred             CeEEEEEcc
Confidence            899999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=213.92  Aligned_cols=250  Identities=25%  Similarity=0.481  Sum_probs=218.4

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .++++++..-  .+.+..|-|.++++++|..+|.+.+||+....++..++.|.+.|.+++.+||+..+++|+.|.+|++|
T Consensus       404 ~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW  481 (888)
T KOG0306|consen  404 LKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW  481 (888)
T ss_pred             cceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence            4566666544  78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC-------ceee-----eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459           92 DARTP-------FDCL-----KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        92 d~~~~-------~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
                      |..-.       .+.+     +++ .-.+.|.|++++||+++|+.+=.|.+|++|-+.+-+....+-+|.-||.|+.++|
T Consensus       482 df~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  482 DFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             eEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence            86311       0111     111 1346799999999999999999999999999999988888999999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      |+++++||+.|..|++|-+.=|.+-+.+..+.+ .+..+.|-|....+.+++.|+.|+.||-..-+.+..+.+|....+|
T Consensus       561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c  639 (888)
T KOG0306|consen  561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC  639 (888)
T ss_pred             CcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence            999999999999999999988888888876554 5667889999999999999999999998888888999999988887


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ...   .++|.++++++.|..|++|.-..
T Consensus       640 Lav---~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  640 LAV---SPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEE---cCCCCeEEeccCCceeEeeeccC
Confidence            754   47899999999999999997543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=8e-29  Score=208.20  Aligned_cols=282  Identities=18%  Similarity=0.314  Sum_probs=222.1

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEeeeccCCEEEEEEccC-----------CCeEEEEcCCCeEEEE
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRFVGHSEGISDLAWSSD-----------SHYICSASDDRTLRIW   91 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~v~~w   91 (312)
                      -++.|++....|.....|..++|||+...+.   ...+.-|...|+++.--|.           ...+.+|+.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            4678999999999999999999999876543   3445568888888765441           2257899999999999


Q ss_pred             eCCCCc--ee----------eee------------------------eecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459           92 DARTPF--DC----------LKT------------------------LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE  135 (312)
Q Consensus        92 d~~~~~--~~----------~~~------------------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd  135 (312)
                      |+....  ..          ++.                        .-...-.+.+++.+|++++|++|...|.+++||
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            986310  00          000                        001123478999999999999999999999999


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEcc---CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC--------------------
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNR---DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD--------------------  192 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------  192 (312)
                      +.+-+....+++|...|.|+.++.   ..++|++++.|..|.++|...+..+......+.                    
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence            998888888899999999999986   346899999999999999865432211111111                    


Q ss_pred             -----------------------------CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEEEE
Q 021459          193 -----------------------------PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCITS  242 (312)
Q Consensus       193 -----------------------------~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~  242 (312)
                                                   ..+..+...|+.+++++++.|..|+|||.++++..+.+++..... ..+. 
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-  646 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-  646 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-
Confidence                                         112335678899999999999999999999999999998765442 2333 


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ....|.+-++++...|.++.++|..+++++.+..||...|+.+.|.+|-+.|++++  ||+.|.||.+
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs--gDgCIFvW~l  712 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS--GDGCIFVWKL  712 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec--CCceEEEEEC
Confidence            34457899999999999999999999999999999999999999999999999999  6779999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=199.60  Aligned_cols=248  Identities=27%  Similarity=0.444  Sum_probs=212.6

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      +.-..+.-|.++|.|+.||.|...||+|+.||.|+||.+.++.++.++. .|+.+|+++.|+.|+..+++++.|.++++-
T Consensus       254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH  333 (508)
T ss_pred             hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe
Confidence            3344566789999999999999999999999999999999999998886 899999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--CcCeEEEEEcc-CCCEEEEee
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SMPVTSVHFNR-DGSLIVSGS  168 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~  168 (312)
                      -+..+ ++++.++||.+.|....|.+||+.+++++.||+|++|+.++.+|+.+++..  ..+|.++..-| +.+.++++.
T Consensus       334 GlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  334 GLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             ccccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence            98875 678999999999999999999999999999999999999999998888643  45677777766 567899999


Q ss_pred             CCCeEEEEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ..+++.+.++. |+.++.+...  .+...-.+..+|.|.++.+.+.|+.++.|...+|+..+.+..|......+  . ..
T Consensus       413 rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl--~-HH  488 (508)
T KOG0275|consen  413 RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL--T-HH  488 (508)
T ss_pred             CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc--c-cC
Confidence            99999999874 6667666433  23445566799999999999999999999999999888887776653322  2 33


Q ss_pred             cCCcEEEEeecCCeEEEEE
Q 021459          247 TNGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd  265 (312)
                      |..++||+-++||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            5577899999999999994

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=1.3e-29  Score=204.91  Aligned_cols=279  Identities=22%  Similarity=0.370  Sum_probs=225.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeee--ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVG--HSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .|...|.++.+|...+.+.||+. |-|+|||+...   ..+..+..  ....|.++...|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            68888999999999999999987 68999998642   22222322  34568899999999999999999999999998


Q ss_pred             CCceeeee-eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           95 TPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        95 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .+...++. +....-...+++.+||.+.++++..||.|.|||+.+...++.+++|...+.|+.+++||..|-+|+-|+++
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            76544432 22222356678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      +.||++++..+.+.  +....+..+..+|++.+|++|-.++.+.+......+....   |. ...|+....+.+-|++++
T Consensus       576 RcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---hl-heScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  576 RCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---HL-HESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             eehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCccceee---cc-cccEEEEEEecccCceee
Confidence            99999998765432  3456677888999999999999999999887655443222   22 224566666667899999


Q ss_pred             EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      +.+.|+.+..|...-+..+...+ ...+|++...+.+.++++|||.|...+|+
T Consensus       650 StGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             ecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence            99999999999988777776655 36789999999999999999965545543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1e-28  Score=187.80  Aligned_cols=240  Identities=23%  Similarity=0.346  Sum_probs=181.2

Q ss_pred             ccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe
Q 021459           63 HSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK  140 (312)
Q Consensus        63 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~  140 (312)
                      ..+.|.+|+|+| ...+++++|.|++||+|+++.. ....+....|.+++.+++|+.||..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            457899999999 4567778999999999999763 22234556789999999999999999999999999999999996


Q ss_pred             EEEEeeecCcCeEEEEEccCCC--EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459          141 CTRVIRAHSMPVTSVHFNRDGS--LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL  218 (312)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  218 (312)
                       ...+..|..+|.++.|-+...  .|++|+.|.+++.||++....+.++...  +.+..+  +--..+++++..+..|.+
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~--Dv~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAA--DVLYPMAVVATAERHIAV  180 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeeh--hccCceeEEEecCCcEEE
Confidence             456778999999999988665  8999999999999999987776655332  122222  223457888999999999


Q ss_pred             EEcCCCcEE-EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch--heeecccCCc---------cceEEEE
Q 021459          219 WNYSAGKFL-KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK--TMIQKLDGHT---------DSVISVT  286 (312)
Q Consensus       219 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~---------~~v~~l~  286 (312)
                      |+++++... +.....  -.+.+.+.....+.+..+.|+-+|++.+..+...  ..-..++.|.         -.|++|+
T Consensus       181 ynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            999776432 222221  1122222223345556689999999999988764  3333444453         2689999


Q ss_pred             EcCCCceEEEeeecCCeeEEEEeec
Q 021459          287 CHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       287 ~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |||..+.|+|+|  +|++.-+||.|
T Consensus       259 FhP~hgtlvTaG--sDGtf~FWDkd  281 (347)
T KOG0647|consen  259 FHPVHGTLVTAG--SDGTFSFWDKD  281 (347)
T ss_pred             eecccceEEEec--CCceEEEecch
Confidence            999999999999  45699999975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=8.6e-29  Score=184.67  Aligned_cols=237  Identities=24%  Similarity=0.431  Sum_probs=196.7

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee--eeecccccEEEEEEec-CCCEEEEeecCCcEEEE
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK--TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIW  134 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~w  134 (312)
                      ..+++|...|.+++|+.+|..|++|+.|+.+.+|+++.. ...+  ..++|.+.|-.++|+| ....+++++.|..|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            345678899999999999999999999999999998754 2222  3467888899999987 45789999999999999


Q ss_pred             EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      |++.+++..........+ .+.|+|+|+++++++.|..|.+.|.++.+......  ....+.-+.|+.++++++..+..|
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCc
Confidence            999999988776555444 56799999999999999999999999877655432  222344456777778888777889


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI  294 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  294 (312)
                      .|.|..+..-+.+..++.|+..-.|+  .+ .|+|+++|+|+.|-.+.+||+.+.-+...+..+.=+|..|.|+.+|++|
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI--~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICI--EF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML  246 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEE--EE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence            99999998888888899898654444  33 4789999999999999999999888888888899999999999999999


Q ss_pred             EEeeecC
Q 021459          295 ASAGLDG  301 (312)
Q Consensus       295 ~~~~~dg  301 (312)
                      |+||.|.
T Consensus       247 ASaSEDh  253 (313)
T KOG1407|consen  247 ASASEDH  253 (313)
T ss_pred             eccCccc
Confidence            9999663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.8e-28  Score=185.65  Aligned_cols=288  Identities=21%  Similarity=0.323  Sum_probs=207.2

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE----EeeeccCCEEEEEEccCCC-eEEEEcCCCeEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH----RFVGHSEGISDLAWSSDSH-YICSASDDRTLR   89 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~   89 (312)
                      ..+|.+|.+.|++++|+.||+.|+|++.|++|++|++.......    +..-.-+..+.++|.||-+ .++++-....++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            34678999999999999999999999999999999988653211    1111123456789999865 555566666899


Q ss_pred             EEeCCCCce-----------eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459           90 IWDARTPFD-----------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN  158 (312)
Q Consensus        90 ~wd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
                      +|.+.....           .+...+.|.-.+..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            997632110           011123455556666667778899999999999999999 88888887777777888999


Q ss_pred             cCCCEEEEeeCCCeEEEEeCC---CCc-----eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-------
Q 021459          159 RDGSLIVSGSHDGTCKIWDAG---EGA-----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-------  223 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-------  223 (312)
                      |+|+++++++..-.+++|.+-   .|.     ...++ ..+...+..++|+++...+++.+.||.+++||..-       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            999999999999999999852   222     12222 34556788899999999999999999999999632       


Q ss_pred             CcEEEEEE--ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-CCccceEEEEEcCCCceEEEeeec
Q 021459          224 GKFLKIYT--GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~d  300 (312)
                      .+.++...  -+......+... ..|+++.|+... ...++++..++++....++ .|...|.+++|+|+|++++++|  
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~-lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--  392 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLE-LSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--  392 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEE-eCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--
Confidence            11222211  111111122222 236787777543 4569999988877766654 5889999999999999999995  


Q ss_pred             CCeeEEEEe
Q 021459          301 GDRTVRVWV  309 (312)
Q Consensus       301 gd~~v~iw~  309 (312)
                       |..+|+..
T Consensus       393 -dr~vrv~~  400 (420)
T KOG2096|consen  393 -DRYVRVIR  400 (420)
T ss_pred             -ceeeeeec
Confidence             67788754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.7e-29  Score=191.12  Aligned_cols=250  Identities=23%  Similarity=0.409  Sum_probs=202.6

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ..+++|-.|.++|+++.|+|...+|++|+.|++|++||+....  ...+......+|.++.|+|.|.+|+.|.+-..+++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            3478999999999999999999999999999999999997643  22334445678999999999999999999999999


Q ss_pred             EeCCCCceeee---eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecC-cCeEEEEEccCCCEEE
Q 021459           91 WDARTPFDCLK---TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHS-MPVTSVHFNRDGSLIV  165 (312)
Q Consensus        91 wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~  165 (312)
                      ||+++. ++..   .-.+|.+.|.++.+++.+++.++++.||.|++||--+++|+.++. +|. ..|.+..|..++++++
T Consensus       243 Ydv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL  321 (430)
T KOG0640|consen  243 YDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL  321 (430)
T ss_pred             Eeccce-eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence            999874 3322   224688999999999999999999999999999999999988775 564 4688999999999999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCC----CcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCcEEEEEE-ccCCceeE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKD----PAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGKFLKIYT-GHTNKKYC  239 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~~~~  239 (312)
                      +.+.|..+++|.+.+++.+....+...    ..-+.+.|.....+++.... .+.+.-||.++...+..+. +|.+...+
T Consensus       322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~  401 (430)
T KOG0640|consen  322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW  401 (430)
T ss_pred             ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence            999999999999999999888765421    11223457777778776643 4678999999887665543 56665444


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      +   ...|.+..+.+++.|-.+++|--
T Consensus       402 i---~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  402 I---VHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             E---EeCCCCCceeeecccceeeeeee
Confidence            4   33467788999999999999964

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.4e-27  Score=180.21  Aligned_cols=245  Identities=23%  Similarity=0.332  Sum_probs=194.2

Q ss_pred             eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcC
Q 021459           60 FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVK  137 (312)
Q Consensus        60 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~  137 (312)
                      +......|.++.|+++|.+|++++.|..+++||..++ ..++++..+.-.+..++|-...+.++.++.  |.+|+.-++.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            3335678999999999999999999999999999886 446666655566777888766677766665  7899999999


Q ss_pred             CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459          138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK  217 (312)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
                      +.+.++-+.+|...|..+..+|-+..+++++.|++|++||++..++..-+....   -..++++|.|-++|++...+.|+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcEEEEecCCCeEE
Confidence            999999999999999999999999999999999999999999776655443222   23467999999999998888999


Q ss_pred             EEEcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccce---EEEEEcCCCc
Q 021459          218 LWNYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV---ISVTCHPTEN  292 (312)
Q Consensus       218 v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~~p~~~  292 (312)
                      +||++.-.  +...+.-..............++|+.|+.....+.+++.|...+.....+.++...-   ....|.|+++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            99998642  233333221222223334455899999999999999999999999888887765432   5667899999


Q ss_pred             eEEEeeecCCeeEEEEee
Q 021459          293 KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~  310 (312)
                      ++++++.  |++|.+|+.
T Consensus       246 Fvl~gs~--dg~i~vw~~  261 (311)
T KOG1446|consen  246 FVLSGSD--DGTIHVWNL  261 (311)
T ss_pred             EEEEecC--CCcEEEEEc
Confidence            9999984  469999986

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.1e-29  Score=196.75  Aligned_cols=247  Identities=26%  Similarity=0.459  Sum_probs=204.6

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      +....+|.+-.++|+.+.|.++++.+++++.|+.+++|+.......+.+.+|++.|+++.|......+++|+.|+++++|
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            34566788889999999999999999999999999999999999999999999999999998877779999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      |+... .+.+++- ....+..+..+  ...+++|-.|+.|++||.++..+......+. .|+++..++++..+++++.|.
T Consensus       289 Dl~k~-~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  289 DLQKA-YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             hhhhh-heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC
Confidence            99873 4444432 12334444443  4568899999999999999999888887766 899999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCC---CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          172 TCKIWDAGEGACLKTLIDDK---DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      ++.++|+++......+....   ....+.+.|||++.|+++|+.||.|+||+..+++..+.+....... .+.+..+.+.
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~s  442 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPS  442 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCC
Confidence            99999999877655443211   1225567899999999999999999999999999888877654442 3555556678


Q ss_pred             CcEEEEeecCCeEEEE
Q 021459          249 GKYIVSGSEDNCVYVW  264 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iw  264 (312)
                      |..|++++.++.+.+|
T Consensus       443 G~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  443 GSGLLSADKQKAVTLW  458 (459)
T ss_pred             CchhhcccCCcceEec
Confidence            9999999999999999

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1e-26  Score=170.50  Aligned_cols=256  Identities=24%  Similarity=0.435  Sum_probs=197.2

Q ss_pred             CCCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ce---EEEeeeccCCEEEEEEccC----C
Q 021459            6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--AL---VHRFVGHSEGISDLAWSSD----S   76 (312)
Q Consensus         6 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~---~~~~~~~~~~v~~~~~~~~----~   76 (312)
                      .+.+.|.-.++.-..|+++|.|.+|||+|++|+||++|+.|++..++..  +.   -..+.-|.+.|..++|..+    +
T Consensus        73 a~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~  152 (350)
T KOG0641|consen   73 AAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG  152 (350)
T ss_pred             cccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence            3455566677777889999999999999999999999999998755432  11   1346679999999999753    4


Q ss_pred             CeEEEEc-CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee--c-----
Q 021459           77 HYICSAS-DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA--H-----  148 (312)
Q Consensus        77 ~~l~~~~-~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~-----  148 (312)
                      .+|++++ .|..|++=|-..+ +....+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++..  |     
T Consensus       153 ~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  153 AILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE  230 (350)
T ss_pred             eEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence            5666654 3556666666554 4466788999999877 444578899999999999999998888776532  2     


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--E
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--F  226 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~  226 (312)
                      ...|..++..|.|+++++|..|...-+||++.++.+.++.. +...+.++.|+|...++++++.|..|++-|++..-  .
T Consensus       231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e  309 (350)
T KOG0641|consen  231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE  309 (350)
T ss_pred             cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence            35689999999999999999999999999999998888754 56779999999999999999999999999986531  1


Q ss_pred             --EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          227 --LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       227 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                        +.+...|..  ..+.+.+.+ ..--+++.+.|.++.+|-++
T Consensus       310 l~~~vv~ehkd--k~i~~rwh~-~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  310 LPIMVVAEHKD--KAIQCRWHP-QDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEeccC--ceEEEEecC-ccceeeeccCcceEEEeccC
Confidence              222333433  345555554 44557788999999999764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=3.5e-28  Score=194.23  Aligned_cols=247  Identities=26%  Similarity=0.419  Sum_probs=192.2

Q ss_pred             ecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcc----------eEEEeeeccCCEEEEEEccCC-CeEEEEcCC
Q 021459           18 LTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLA----------LVHRFVGHSEGISDLAWSSDS-HYICSASDD   85 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d   85 (312)
                      ...|.+.|+.+++-|+.. ++|+.+..+.+.|||.....          +-.++.+|...-++++|++.. -.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            346999999999999765 67777888999999976421          223788999878899999864 488899999


Q ss_pred             CeEEEEeCCCCce------eeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcC--CCeEEEEeeecCcCeEEEE
Q 021459           86 RTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVK--TGKCTRVIRAHSMPVTSVH  156 (312)
Q Consensus        86 ~~v~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~  156 (312)
                      +.|++||+.....      ....+.+|.+.|..++|++- ..++++++.|+.+.+||++  +.+......+|..++.|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            9999999865322      23456789999999999985 4678999999999999999  5566667788999999999


Q ss_pred             Ecc-CCCEEEEeeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCC---------
Q 021459          157 FNR-DGSLIVSGSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAG---------  224 (312)
Q Consensus       157 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~---------  224 (312)
                      |+| ++..||+|+.|++|++||+|+-.. +..+ ..+...+..+.|+|.. ..|++++.|+.+.+||+..-         
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTF-EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceec-cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            999 667888999999999999998543 4444 4456678888999975 47778899999999998531         


Q ss_pred             -----cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          225 -----KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       225 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                           +.+.+..+|...+  ....+.+...-.|+++++|+.+.||...
T Consensus       359 ~dgppEllF~HgGH~~kV--~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKV--SDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEecCccccc--ccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 1223334555443  2334455556678999999999999875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-27  Score=190.63  Aligned_cols=285  Identities=17%  Similarity=0.241  Sum_probs=226.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCc
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~   97 (312)
                      -.++|+++.|+|...+|++|+.|+.+++|.+..  ...+..+.-...+|.+.+|.|+|+ .+++++....++.||+.+..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            467899999999999999999999999997764  345555655678999999999998 89999999999999998743


Q ss_pred             e-eeeeeeccc-ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           98 D-CLKTLRGHS-DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        98 ~-~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      . .++.+.++. ..+.....++++++++..+..|.|.+....+++.+..++. .+.|..+.|+.+++.+++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            2 233333443 3456677889999999999999999999999888777764 456899999999999999999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC------cEEEEEEccCCceeEEEEEEEccCC
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG------KFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      ||+++..+++++..+..-.-..++.++++.+||+|+..|.|.|||..+.      ++++.+..   -...++...+.++.
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDA  447 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcch
Confidence            9999999999887766656677888999999999999999999996542      22222221   22345555566778


Q ss_pred             cEEEEee--cCCeEEEEECCchheeecccCC---ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          250 KYIVSGS--EDNCVYVWDLQQKTMIQKLDGH---TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       250 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+||.+|  .+..+++-.+.+.+....++..   -+.|.|++|+|.+.++|.|..+  +.|.+|.+.
T Consensus       448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~--grv~l~kL~  512 (514)
T KOG2055|consen  448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA--GRVHLFKLH  512 (514)
T ss_pred             hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC--CceeeEeec
Confidence            8877665  5678999998887777666543   3469999999999999998854  589999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.4e-27  Score=202.58  Aligned_cols=270  Identities=19%  Similarity=0.312  Sum_probs=214.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc-ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL-ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      +|+..-+.++|.|+|+.|.+++.||.|++|+.... +....+.-+...|.+++.  .+.+|++|+.++.|.+|....+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence            58999999999999999999999999999987665 333333336677777665  455999999999999998866432


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                       -..+..-.-++.+++++.+|++++.|+.|-.|++-++........+++|..+|.++.|+|++++||+.+.||.|++||+
T Consensus        89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             -cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence             1122223457889999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             CCCceeeEcccC-------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          179 GEGACLKTLIDD-------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       179 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .++...+++..-       ....+..++|+|+|..+++...|+.|++|+..+.+....+........ +....+.|+|.+
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FSDLQWSPNGKY  246 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eEEEEEcCCCcE
Confidence            988765544221       134466788999999999999999999999888777666554332222 333455688999


Q ss_pred             EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      ||+++.||.|.|||..+.+.    ......|.+++|.|+.+.+-.-
T Consensus       247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEE
Confidence            99999999999999987322    2234579999999998765443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.2e-27  Score=181.62  Aligned_cols=286  Identities=19%  Similarity=0.422  Sum_probs=216.7

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcc------eEE---------EeeeccCCEEEEEEcc-CCCeEEE
Q 021459           19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLA------LVH---------RFVGHSEGISDLAWSS-DSHYICS   81 (312)
Q Consensus        19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~------~~~---------~~~~~~~~v~~~~~~~-~~~~l~~   81 (312)
                      ..|.++|+++...+ .|+++++|+.||.|.|||+++..      ++.         .-.+|..+|.++.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            56999999999988 78999999999999999987643      111         1136888999999998 5668888


Q ss_pred             EcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC---CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459           82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN  158 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
                      ++.|.++++||.++..+ ...++ -.+.|.+-+++|-.   .++++|..+-.|++.|+.+|.+...+.+|...|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999987532 32332 34567777777743   367777888899999999999999999999999999999


Q ss_pred             cCCCE-EEEeeCCCeEEEEeCCCC-ceeeEcc-------------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          159 RDGSL-IVSGSHDGTCKIWDAGEG-ACLKTLI-------------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       159 ~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      |..++ |++|+.||.|++||++.. .+...+-             ..+...+..++|+.++.++++.+.|..+++|+..+
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            97764 678999999999999864 2222211             12234566788999999999999999999999988


Q ss_pred             CcEEEE-EE--ccCCc-eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459          224 GKFLKI-YT--GHTNK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       224 ~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      |+.... +-  .+... ...+... . .+...++.--.++.+.++++-+++.+..+..|-..|.|.++.|+=+...++..
T Consensus       278 G~ntl~~~g~~~~n~~~~~~~~~~-~-~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~  355 (397)
T KOG4283|consen  278 GRNTLREFGPIIHNQTTSFAVHIQ-S-MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM  355 (397)
T ss_pred             CcccccccccccccccccceEEEe-e-cccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence            764221 10  11111 1112211 2 22334444556689999999999999999999999999999999999999886


Q ss_pred             cCCeeEEEEee
Q 021459          300 DGDRTVRVWVQ  310 (312)
Q Consensus       300 dgd~~v~iw~~  310 (312)
                      |+  ++.-|.+
T Consensus       356 d~--ni~~w~p  364 (397)
T KOG4283|consen  356 NG--NIYMWSP  364 (397)
T ss_pred             CC--ccccccc
Confidence            64  7877765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=9e-28  Score=210.34  Aligned_cols=255  Identities=27%  Similarity=0.457  Sum_probs=201.8

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC------------------cceEEEeeeccCCEEEEEEcc
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS------------------LALVHRFVGHSEGISDLAWSS   74 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~   74 (312)
                      ++.-++..|.+.|+|++|+|||.+||+|+.|+.|.||....                  .+....+.+|...|..++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            34456778999999999999999999999999999998662                  135567889999999999999


Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-----
Q 021459           75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-----  149 (312)
Q Consensus        75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----  149 (312)
                      ++.+|++++.|++|.+||..+- +.++.+++|.+.|..+.|+|-|+++++-+.|++|++|++..-...+.+..+-     
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence            9999999999999999999885 8899999999999999999999999999999999999977655554443321     


Q ss_pred             -cCeEEEEEccCCCEEEEeeC----CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-------------CC----EE
Q 021459          150 -MPVTSVHFNRDGSLIVSGSH----DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-------------GK----FI  207 (312)
Q Consensus       150 -~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~l  207 (312)
                       .-..-+.|+|||.+|++...    -..+.|.+-.+.+.-..+.++.. .+..++|+|.             .+    .+
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~  297 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIA  297 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEE
Confidence             23678999999999998643    23577887766666666666554 6788888872             11    67


Q ss_pred             EEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459          208 LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       208 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  271 (312)
                      |+|+.|+.|.||.....+++....  .-....+.-..+.++|..|..+|.||.|.+..+++.++
T Consensus       298 AvgSqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  298 AVGSQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             EEecCCccEEEEecCCCCchhhhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            889999999999976666544332  11112233344558899999999999999999876544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-27  Score=177.93  Aligned_cols=233  Identities=21%  Similarity=0.429  Sum_probs=195.2

Q ss_pred             EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459           59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                      .+++|..+++.+.++.+|.+|++|+.|....+|-..++ +.+.++.||.+.|+|+..+.+.+.+++|+.|.++++||+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            46789999999999999999999999999999976665 66889999999999999999999999999999999999999


Q ss_pred             CeEEEEeeecCcCeEEEEEccCCCEEEEeeC-----CCeEEEEeCCC-------CceeeEcccCCCCcEEEEEECCCCCE
Q 021459          139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-----DGTCKIWDAGE-------GACLKTLIDDKDPAVSFAKFSPNGKF  206 (312)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
                      |+.+..++. ..+|..+.|+++|++++..+.     .+.|.++|++.       ......+.. .+..+..+.|+|-+++
T Consensus        84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGET  161 (327)
T ss_pred             CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCE
Confidence            999888764 568999999999998887654     46799999983       233333333 3456777889999999


Q ss_pred             EEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEE
Q 021459          207 ILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV  285 (312)
Q Consensus       207 l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  285 (312)
                      |++|..||.|.+||.+++.. +.....|...   +......++..++++++.|.+-++||..+.+.++++. -..+|++.
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a  237 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSDEEHSSK---INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA  237 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeechhhhccc---cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence            99999999999999999854 4444445543   3334455788999999999999999999988888876 46799999


Q ss_pred             EEcCCCceEEEee
Q 021459          286 TCHPTENKIASAG  298 (312)
Q Consensus       286 ~~~p~~~~l~~~~  298 (312)
                      +++|....++.+|
T Consensus       238 aisP~~d~VilgG  250 (327)
T KOG0643|consen  238 AISPLLDHVILGG  250 (327)
T ss_pred             ecccccceEEecC
Confidence            9999888887776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=9.6e-26  Score=185.83  Aligned_cols=269  Identities=19%  Similarity=0.233  Sum_probs=194.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC  112 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~  112 (312)
                      ++.+++++.|+.+++||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..++ +....+..+.. +..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGPD-PEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCCC-ccE
Confidence            3578899999999999999888877777553 46789999999876 56678899999998875 33444443333 467


Q ss_pred             EEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC-eEEEEeCCCCceeeEcccC
Q 021459          113 VNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG-TCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       113 ~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~  190 (312)
                      +.++|+++.++++ +.++.|++||+++++.+..+.. ...+.+++|+|++++++++..++ .+.+||..++.........
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD  156 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence            8899999877554 5689999999998877666543 23467899999999999888765 4677898877665543322


Q ss_pred             CCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccC-----CceeEEEEEEEccCCcEE-EEeecCCeEEE
Q 021459          191 KDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHT-----NKKYCITSTFSVTNGKYI-VSGSEDNCVYV  263 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i  263 (312)
                      .  ....+.|+|++++|+++ ..++.|++||+.+++.+..+..+.     .........+ .++++++ ++.+.++.|.+
T Consensus       157 ~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       157 Q--RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             C--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEEE
Confidence            2  23457799999988655 468999999999887766554221     1111122233 3667764 44556778999


Q ss_pred             EECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       264 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ||+.+++....+. +...+.+++|+|++++|++++. .++.|++|+.+
T Consensus       234 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~  279 (300)
T TIGR03866       234 VDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVA  279 (300)
T ss_pred             EECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECC
Confidence            9998877665543 3457899999999999887642 24689999975

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.8e-30  Score=214.18  Aligned_cols=254  Identities=26%  Similarity=0.515  Sum_probs=218.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      +.++......-.+++|+...      +..|...|.++..-..++.+++|+.|..+.+|.+..+. .+..+.+|..+|.++
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL   76 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence            34444455556677887653      34577788888877778899999999999999987653 355688999999999


Q ss_pred             EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC
Q 021459          114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP  193 (312)
Q Consensus       114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (312)
                      .|+++..++++|+.+|+|++||++..+..+.+.+|...+..+.|+|-+.+++.|+.|+.+++||.+...+.+.+.. +..
T Consensus        77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~  155 (825)
T KOG0267|consen   77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTR  155 (825)
T ss_pred             ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-Ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998777777655 667


Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459          194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ  273 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (312)
                      .+..+.|+|+|++++.++.|..++|||+..|+..+.|..|......+.   ..+..-++++|+.|++|++||+++.+.+.
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEEee
Confidence            788999999999999999999999999999999999988877655544   23455678999999999999999999998


Q ss_pred             cccCCccceEEEEEcCCCceEEEee
Q 021459          274 KLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       274 ~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      ..+.....|.+++|+|++..+.+|-
T Consensus       233 s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  233 SGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccCCccCCceeeeecCCceeeecCc
Confidence            8888888999999999998887653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=204.08  Aligned_cols=230  Identities=22%  Similarity=0.460  Sum_probs=194.1

Q ss_pred             EEEEcc-CCCeEEEEcCCCeEEEEeCCCCce-----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--e
Q 021459           69 DLAWSS-DSHYICSASDDRTLRIWDARTPFD-----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--K  140 (312)
Q Consensus        69 ~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~  140 (312)
                      .+..+. .+++|++|+.||.|++|+......     .+..++.|.+.|..+..-.+++.|++++.|.+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            344443 567899999999999998754322     35677889999999998889999999999999999999877  5


Q ss_pred             EEEEeeecCcCeEEEEE-ccCCCEEEEeeCCCeEEEEeCCCCce--eeEc--------ccCCCCcEEEEEECCCCCEEEE
Q 021459          141 CTRVIRAHSMPVTSVHF-NRDGSLIVSGSHDGTCKIWDAGEGAC--LKTL--------IDDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       141 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      +..++..|...|.|+++ .++..++++|+-|+.|.+||+.++..  +.++        .......+..++..+.|..++.
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            77788999999999999 88889999999999999999987632  2111        1123345667788899999999


Q ss_pred             EecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          210 GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       210 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      |+.++.+++||.++++.+-.+.+|+....++.   ..++|..+++++.||+|++||+..++++.++..|...|+++..+|
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll---~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL---VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEE---EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence            99999999999999998888889998755543   457899999999999999999999999999999999999999999


Q ss_pred             CCceEEEeeecC
Q 021459          290 TENKIASAGLDG  301 (312)
Q Consensus       290 ~~~~l~~~~~dg  301 (312)
                      +-..+.+|+-||
T Consensus       266 sf~~vYsG~rd~  277 (735)
T KOG0308|consen  266 SFTHVYSGGRDG  277 (735)
T ss_pred             CcceEEecCCCC
Confidence            999999988665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.1e-27  Score=190.01  Aligned_cols=247  Identities=24%  Similarity=0.412  Sum_probs=199.1

Q ss_pred             EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee----------------eeee-ecccccEEEEEEecCC
Q 021459           57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC----------------LKTL-RGHSDFVFCVNFNPQS  119 (312)
Q Consensus        57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~----------------~~~~-~~~~~~v~~~~~~~~~  119 (312)
                      ...+..|..++.+++++|+..+.++++.+++|.-|++.++...                .+.- ++|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3456679999999999999999999999999999998664321                1111 3788899999999999


Q ss_pred             CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459          120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK  199 (312)
Q Consensus       120 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (312)
                      ++|++|+.|..|.||+.++.+.++.+..|..+|.+++|-.....+++++.|+.+++|++.....+.++.++++.... +.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~-Id  293 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG-ID  293 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee-ec
Confidence            99999999999999999999999999999999999999988889999999999999999888777777777665444 33


Q ss_pred             ECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-C-
Q 021459          200 FSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-G-  277 (312)
Q Consensus       200 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-  277 (312)
                      ....++.+-+|+.|.++++|++... ...++.++.....|+.+    -+...+++|+.||.|.+|++....++.... + 
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~----In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAF----INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEE----ecccceeeccCCceEEEeeecccCceeEeeccc
Confidence            4445677777889999999999443 33456666555445433    356789999999999999997766554321 1 


Q ss_pred             ----------CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          278 ----------HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       278 ----------h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                                +..+|++|+.-|....+++||.+  +.||+|...
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--G~vrLW~i~  410 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--GCVRLWKIE  410 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecCCC--CceEEEEec
Confidence                      22389999999999999999955  699999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.5e-28  Score=178.77  Aligned_cols=249  Identities=25%  Similarity=0.403  Sum_probs=190.8

Q ss_pred             eeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEec--CCCEEEEeecCCcEEEEEc
Q 021459           61 VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        61 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~  136 (312)
                      ..|.+.|.++...-.|+.|++|+.|++|+|+.+++..  ..+..+.||.++|..++|..  .|++|+++++||.|.+|.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            3588888888887789999999999999999987654  56778999999999999964  7899999999999999998


Q ss_pred             CCCeEE--EEeeecCcCeEEEEEccC--CCEEEEeeCCCeEEEEeCCCC--ceeeEcccCCCCcEEEEEECCC---C---
Q 021459          137 KTGKCT--RVIRAHSMPVTSVHFNRD--GSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPN---G---  204 (312)
Q Consensus       137 ~~~~~~--~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~---~---  204 (312)
                      .+++-.  .....|...|++++|.|.  |-.|++++.||.|.+.+.++.  .....+...+...+..++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            877432  345678999999999985  568899999999999887654  2233344445556677778775   4   


Q ss_pred             --------CEEEEEecCCeEEEEEcCCCcE--EEEEEccCCceeEEEEEEEcc-CCcEEEEeecCCeEEEEECCchh---
Q 021459          205 --------KFILVGTLDSTLKLWNYSAGKF--LKIYTGHTNKKYCITSTFSVT-NGKYIVSGSEDNCVYVWDLQQKT---  270 (312)
Q Consensus       205 --------~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---  270 (312)
                              +.|++|+-|+.|+||+..+++.  .+.+.+|.+-...+..+.... ....||+++.||.|.||-.....   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    5699999999999999988643  234667765433332221111 12479999999999999765221   


Q ss_pred             eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          271 MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       271 ~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ....++.....+.++.|++.|+.|+.++  ||+.|.+|..+
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~  286 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN  286 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence            1223444667899999999999999988  78899999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.4e-27  Score=189.52  Aligned_cols=247  Identities=20%  Similarity=0.385  Sum_probs=192.3

Q ss_pred             eccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCce---------eeeeeecccccEEEEEEecCC-CEEEEeecCCc
Q 021459           62 GHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPFD---------CLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDES  130 (312)
Q Consensus        62 ~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~  130 (312)
                      .|.+.|+.+.+.|+. .++++.+..+.++|||......         .-..+.+|.+.-..++|++.. -.+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            488899999999976 4677778889999999754211         112577888877889999865 47899999999


Q ss_pred             EEEEEcCCCeE-------EEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEEC
Q 021459          131 IRIWEVKTGKC-------TRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFS  201 (312)
Q Consensus       131 i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  201 (312)
                      |.+||+.....       ...+..|...|..++|++ +..+|++++.|+.+.|||+|++ .........+...+.+++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            99999975432       346778999999999999 5568899999999999999963 12222334456778999999


Q ss_pred             CC-CCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----------
Q 021459          202 PN-GKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----------  269 (312)
Q Consensus       202 ~~-~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------  269 (312)
                      |- +..||+|+.|++|++||+|+-+ .+..+.+|.....++  .+++.....||+.+.|+.+.+||+..-          
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE--EeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            95 4577888999999999998764 467788888776555  567778889999999999999999542          


Q ss_pred             ----heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          270 ----TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       270 ----~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                          +++..-.||...|..+.|+|...++++.- ..|+.+.||++.
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s  404 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA  404 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence                22344568999999999999988765332 246899999974

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.2e-26  Score=191.50  Aligned_cols=288  Identities=21%  Similarity=0.295  Sum_probs=217.7

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLR   89 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~   89 (312)
                      ..+...+.+|++.|.++...|.|.+|++|+.||+++||.+.++.++..+. ..+.|.+++|+|.+.  .||++- ...+.
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~  467 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVL  467 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence            44555678999999999999999999999999999999999999988765 456899999999764  455443 33344


Q ss_pred             EEeCCCC------------------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecC---Cc
Q 021459           90 IWDARTP------------------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---ES  130 (312)
Q Consensus        90 ~wd~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~  130 (312)
                      +.+..-+                                    ..-+...-.|...|..+.|+..|.+|++...+   ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            4432110                                    00011223467788999999999999987654   46


Q ss_pred             EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459          131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG  210 (312)
Q Consensus       131 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
                      |.|+++...+....|+...+.+.++.|+|...+|++++.. .|++||+.....++.+.. ....++.++.+|.|..|+++
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~g  625 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILG  625 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEe
Confidence            8899998776655565556778999999999898888764 799999988766666543 34568888999999999999


Q ss_pred             ecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC------Cch---heeecccCCcc
Q 021459          211 TLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL------QQK---TMIQKLDGHTD  280 (312)
Q Consensus       211 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------~~~---~~~~~~~~h~~  280 (312)
                      +.|+.+..||+.-.. ..+.+..|......+   .....-.++++|+.||.+.+|.-      ...   .+++.+.+|..
T Consensus       626 s~d~k~~WfDldlsskPyk~lr~H~~avr~V---a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~  702 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV---AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK  702 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhhhhhhhhhhh---hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence            999999999997553 344455555443222   33345568999999999999843      222   34577889876


Q ss_pred             c----eEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          281 S----VISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       281 ~----v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      .    |+.+.|||...+|.++|+|  ++||+|
T Consensus       703 ~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf  732 (733)
T KOG0650|consen  703 TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF  732 (733)
T ss_pred             ecccceEeecccCCCceEEecCCC--ceEEee
Confidence            5    9999999999999999955  589998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-25  Score=191.92  Aligned_cols=294  Identities=21%  Similarity=0.346  Sum_probs=226.1

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRI   90 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~   90 (312)
                      -+...++.++...|+++.-+|--..+|.|-.+|+|.++++...+.+..++...+.|++++|..||+ .+++|+..|.+-+
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            355667889999999999999999999999999999999999999988885569999999999987 6667777799999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC--CC--eEEEEeeecCcCeEEEEEc-cCCCEEE
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK--TG--KCTRVIRAHSMPVTSVHFN-RDGSLIV  165 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~--~~~~~~~~~~~~v~~~~~~-~~~~~l~  165 (312)
                      ||++...........|.+.+....|-|....+++++.|..+++|=..  .|  +.++.-.+|..|..++.|. .+|..+.
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence            99987544334444788888888999999999999999998887443  33  3344556788888888887 5777888


Q ss_pred             EeeCCCeEEEEeCCC-----------------------------------------------------------------
Q 021459          166 SGSHDGTCKIWDAGE-----------------------------------------------------------------  180 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~-----------------------------------------------------------------  180 (312)
                      +++.|++.+.+++..                                                                 
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            888887766654321                                                                 


Q ss_pred             Ccee-eEccc----CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE---ccCCceeEEEEEEEccCCcEE
Q 021459          181 GACL-KTLID----DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT---GHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       181 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      ...- ..+..    ..+..+..++.++.|++.+.|+..|.|-+|++++|-....+.   .|...   +........++.+
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~---V~gla~D~~n~~~  508 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE---VTGLAVDGTNRLL  508 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc---eeEEEecCCCceE
Confidence            1100 00000    012345667789999999999999999999999998877773   34443   3333333446789


Q ss_pred             EEeecCCeEEEEECCchhe-----------------------------------------eecccCCccceEEEEEcCCC
Q 021459          253 VSGSEDNCVYVWDLQQKTM-----------------------------------------IQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~~h~~~v~~l~~~p~~  291 (312)
                      ++++.+|.+.+||.+...+                                         ++.+.||++.|++++|||+|
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            9999999999998765442                                         23446899999999999999


Q ss_pred             ceEEEeeecCCeeEEEEee
Q 021459          292 NKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       292 ~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++|++++.|  .+||+||+
T Consensus       589 rWlisasmD--~tIr~wDl  605 (910)
T KOG1539|consen  589 RWLISASMD--STIRTWDL  605 (910)
T ss_pred             cEEEEeecC--CcEEEEec
Confidence            999999976  59999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-27  Score=175.66  Aligned_cols=246  Identities=22%  Similarity=0.334  Sum_probs=190.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEEEeC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..|++.|......--|++|||++.|++|+|+...+.   +++..+.+|.++|..++|..  .|.+||+++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            569999999999889999999999999999988764   46788999999999999976  6999999999999999987


Q ss_pred             CCCce-eeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCC---eEEEEeeecCcCeEEEEEccC---C---
Q 021459           94 RTPFD-CLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRD---G---  161 (312)
Q Consensus        94 ~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~---~---  161 (312)
                      +++.- .......|...|.+++|.|.  |-.|++++.||.|.+.+.++.   ...+....|...|+++.|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            76521 12234568899999999885  467999999999999988654   233456789999999999985   4   


Q ss_pred             --------CEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCC----CEEEEEecCCeEEEEEcCCC--cE
Q 021459          162 --------SLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNG----KFILVGTLDSTLKLWNYSAG--KF  226 (312)
Q Consensus       162 --------~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~--~~  226 (312)
                              +.|++|+.|+.|++|+..+++... ..+..+..-+..++|.|.-    .++++++.||++.||..+..  ..
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    469999999999999988764322 2244455567778888864    47999999999999976522  11


Q ss_pred             -EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          227 -LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                       ...+......  +....++ ..|.+|+.++.|+.|++|.-+
T Consensus       248 k~tll~~f~~~--~w~vSWS-~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  248 KKTLLEEFPDV--VWRVSWS-LSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccccccCCcc--eEEEEEe-ccccEEEEecCCcEEEEEEeC
Confidence             1222222222  2333343 568999999999999999654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=200.54  Aligned_cols=278  Identities=19%  Similarity=0.349  Sum_probs=208.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeee---ccCCEEEEEEcc-CCCeEEEEcCCCeEEEEe
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVG---HSEGISDLAWSS-DSHYICSASDDRTLRIWD   92 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd   92 (312)
                      -+...+++...++...|+.+|.. .+.|+.....    ++......   -...+..+.|.. +.++||+++..|.|.+||
T Consensus        38 ~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   38 LKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             cccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            35677788888999989888874 6778765532    22222211   112455788885 578999999999999999


Q ss_pred             CCCC--ceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEee
Q 021459           93 ARTP--FDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGS  168 (312)
Q Consensus        93 ~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  168 (312)
                      +...  .+.+..+..|...+.++.|++ ..++|++|+.||+|++||++..+....+......|+.++|+| .+..|+++.
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            9762  344556778999999999998 457899999999999999999988888888888899999999 567899999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE-EEcc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST-FSVT  247 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~  247 (312)
                      ..|.+++||+|....-...+..+.+.+.++.|+|++.+||+|+.|+.|+|||..+++.......++.  ..+... |-+.
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--apv~rVkWRP~  274 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--APVGRVKWRPA  274 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--ceeeeeeeccC
Confidence            9999999999986544434456777888999999999999999999999999986654332222222  123222 3333


Q ss_pred             CCcEEEEee--cCCeEEEEECCchh-eeecccCCccceEEEEEcC-CCceEEEeeecC
Q 021459          248 NGKYIVSGS--EDNCVYVWDLQQKT-MIQKLDGHTDSVISVTCHP-TENKIASAGLDG  301 (312)
Q Consensus       248 ~~~~l~~~~--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~dg  301 (312)
                      ...+|++++  .|-.|+|||++..- +...+..|...+..++|.. +-..|.++|-||
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence            445677664  57889999997653 4567888999999999965 445677777443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.2e-25  Score=184.66  Aligned_cols=278  Identities=20%  Similarity=0.327  Sum_probs=217.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-EEeeec-cCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV-HRFVGH-SEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+..-..+|++++|+.+.+.||.+..||.|.+|++...-.+ ..+.++ ...|.+++|. ++..|++.+.+|.|.-||+.
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence            34445779999999999999999999999999999875433 334444 4679999999 55577788899999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE--EeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      +. +....+....+.|++++.+|.+..++.|+.||.+..++...++...  .+...++.+.++.|+|++..+++|+.||.
T Consensus        99 ~l-k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen   99 TL-KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             cC-ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence            85 4455666677899999999999999999999988888888776543  34445678999999999999999999999


Q ss_pred             EEEEeCCCCceeeEcc------cC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          173 CKIWDAGEGACLKTLI------DD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      |++||...+.......      .. ....+..+.+- ....+++|...|+|.+||...+..+..+..|.....++..   
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav---  253 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV---  253 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE---
Confidence            9999999887655111      11 22234444444 3357899999999999999999988888888777666544   


Q ss_pred             ccCCcEEEEeecCCeEEEEECCchhe----eecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQKTM----IQKLDGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      .++++.+++++.|+.|..|.......    ......|...|.+++..++  .+++||.|.+
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence            46778999999999999998765422    3344568889999999776  8888887653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.7e-28  Score=203.65  Aligned_cols=242  Identities=20%  Similarity=0.387  Sum_probs=189.8

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCce
Q 021459           24 AVSCVKFSN-DGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        24 ~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      .+..++|.. +.++|||++.+|.|.+||+..   .+++..+..|...++++.|++. ..+|++|+.||.|++||++.. .
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~  167 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-K  167 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-c
Confidence            455678874 567999999999999999987   5566677889999999999985 568999999999999999874 4


Q ss_pred             eeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459           99 CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW  176 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (312)
                      ...+..+....|+.+.|+| .++.++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+||
T Consensus       168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            5666777888999999998 4678999999999999999854 4566778999999999999999999999999999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCE-EEEEe--cCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKF-ILVGT--LDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      |..+++......-.....+..+.|-|...+ |++++  .|-.|+|||++..- ....+..|.....  .+.+...+...+
T Consensus       248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt--~i~W~~~d~~~l  325 (839)
T KOG0269|consen  248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT--GIAWDSGDRINL  325 (839)
T ss_pred             eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc--ceeccCCCceee
Confidence            998765443333344567888899997664 44443  57789999997654 3456666665432  223333456678


Q ss_pred             EEeecCCeEEEEECCc
Q 021459          253 VSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~  268 (312)
                      .+++.||.|..-..++
T Consensus       326 ~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  326 WSCSKDGTVLQHLFKN  341 (839)
T ss_pred             EeecCccHHHHhhhhc
Confidence            8999999886654443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3e-26  Score=175.55  Aligned_cols=279  Identities=23%  Similarity=0.449  Sum_probs=207.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      ..|+.|++-|.+||.|..||.|.+||+.+...-..+.+|..+|++++|+++|+.|+++|.|..+.+||+..+. +++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            7899999999999999999999999999988878889999999999999999999999999999999998764 555554


Q ss_pred             cccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeec-----CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          105 GHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAH-----SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       105 ~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                       .+++|+.+.|+|.. +.+++.-.+..-.+-++..++. ..+...     .....+..|.+.|+++++|...|.+.++|.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence             46789999999943 4444444444444555543221 111110     111233468899999999999999999999


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-------cEE--EEEEccCCceeEEEEEEEccCC
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-------KFL--KIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      .+-+++..+.-.....+..+.++..|..|++-+.|..||.|+.+.-       +..  ..++.-.++...-.++|+ .+|
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs-~dg  261 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS-GDG  261 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec-CCc
Confidence            8877776654333356777889999999999999999999997631       110  001100111111123344 578


Q ss_pred             cEEEEee-cCCeEEEEECCchheeecccCCc-cceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          250 KYIVSGS-EDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       250 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+++.|+ ....++||.-..+.+++.+.|.. .....+.|||-...+++..   .++|++|-+
T Consensus       262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---sg~v~iw~~  321 (405)
T KOG1273|consen  262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---SGVVYIWAV  321 (405)
T ss_pred             cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---CCceEEEEe
Confidence            8887665 45789999999999999998876 5788999999988887763   358999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=9.7e-26  Score=172.18  Aligned_cols=236  Identities=24%  Similarity=0.338  Sum_probs=180.2

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      .+.|.++.|+|.+..|++++.||++++||+...  .++..-.|..++.+++|.+ ...+++|+.||.|+.+|+++++.. 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            578999999999999999999999999998764  2333345889999999987 468899999999999999988643 


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      .+..|..++.++.+++....+++|+.|++|++||.+.......+.  ....+.  +.+-.++.|++|+.+..|.+||+++
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEE--EEeccCCEEEEeecCceEEEEEccc
Confidence            456799999999999988899999999999999999754443332  222333  3456788999999999999999988


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCc---------cceEEEEEcCC
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHT---------DSVISVTCHPT  290 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~~p~  290 (312)
                      ....... ....-.+.+.+....|++.-.+.++-||+|.+=.+...    ..-..++.|.         -+|++++|||-
T Consensus       165 ~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  165 LDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             ccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            6543311 12222344444445567778899999999988555433    2222344443         27999999999


Q ss_pred             CceEEEeeecCCeeEEEEee
Q 021459          291 ENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       291 ~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+.|+|||.|  +-|.+|+.
T Consensus       244 ~~tfaTgGsD--G~V~~Wd~  261 (323)
T KOG1036|consen  244 HGTFATGGSD--GIVNIWDL  261 (323)
T ss_pred             cceEEecCCC--ceEEEccC
Confidence            9999999955  58999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=5e-26  Score=189.00  Aligned_cols=280  Identities=24%  Similarity=0.410  Sum_probs=205.4

Q ss_pred             EEECC---CCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           28 VKFSN---DGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        28 ~~~s~---~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      ..|++   ....|+.+..||.|.++|.....      .+.....|...|.++.|-|-...|++++.|.++++||+.+. .
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~  133 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-R  133 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-e
Confidence            56664   34579999999999999987543      23556789999999999996678999999999999999875 3


Q ss_pred             eee--eeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCe---------------------------EEEEeeec
Q 021459           99 CLK--TLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGK---------------------------CTRVIRAH  148 (312)
Q Consensus        99 ~~~--~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~---------------------------~~~~~~~~  148 (312)
                      +..  ...||.+.+.+++|.|.. ..|++|+.||.|.|||++-..                           .+..-+++
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            333  367899999999999954 678999999999999986321                           00111223


Q ss_pred             CcCeEE---EEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEcc--------cC--CCCcEEEEEECCCCCEEEEEecCC
Q 021459          149 SMPVTS---VHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTLI--------DD--KDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       149 ~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      ...+.+   +.+..|+..|++++. |+.|++||++..+......        ..  ....+..+..+..|.+|.+...|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            333444   445578888998887 9999999999765432211        11  011244455677789999888899


Q ss_pred             eEEEEEcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe-eecccCCccceEEEEEcCCC
Q 021459          215 TLKLWNYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM-IQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       215 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~  291 (312)
                      .|++|++....  .+..+.++......+... ..+++.++++|+.|+..++|.+.+-+. ...+.+|...|.+++|.|..
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~-lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSE-LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeee-cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            99999987643  344455554443333332 347899999999999999999976543 55678999999999998854


Q ss_pred             -ceEEEeeecCCeeEEEEeec
Q 021459          292 -NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       292 -~~l~~~~~dgd~~v~iw~~~  311 (312)
                       .-+++++  .|.+++||...
T Consensus       373 ~t~v~TcS--dD~~~kiW~l~  391 (720)
T KOG0321|consen  373 TTPVATCS--DDFRVKIWRLS  391 (720)
T ss_pred             CCCceeec--cCcceEEEecc
Confidence             4567776  46799999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=194.18  Aligned_cols=247  Identities=23%  Similarity=0.376  Sum_probs=207.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCCC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDART   95 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~~   95 (312)
                      .+....+.+++.||+|+.||+|..-|+++||++...+....++.|...|.++.|+..   .++||+++.|+.|++||+..
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            345678999999999999999999999999999999988899999999999999853   46899999999999999987


Q ss_pred             CceeeeeeecccccEEEEEEecCC--CEEEEeecCCcEEEEEcCCCeEEEEeee-----cCcCeEEEEEccCCCEEEEee
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRIWEVKTGKCTRVIRA-----HSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ....++++.+|...|.++.|...+  ..+++++.|..|.+--.+....-..+..     .+..++.|+..|.-+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence            778889999999999999998876  6799999999886532221111112211     234688999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCC--CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKD--PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .|..|+|||+.+++..+.+.+.++  ...--+..+|.|.|+++...|+++.++|+.+++++....+|.+.   ++...+.
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~---VTG~kF~  692 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA---VTGVKFL  692 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh---eeeeeec
Confidence            999999999999999888876543  33344568999999999999999999999999999999998875   3444455


Q ss_pred             cCCcEEEEeecCCeEEEEECCc
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ++-++|++.+.||+|.+|.+..
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccchhheeecCCceEEEEECch
Confidence            7889999999999999999853

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=4e-26  Score=185.35  Aligned_cols=249  Identities=24%  Similarity=0.353  Sum_probs=183.9

Q ss_pred             ceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE------------EeeeccCCEEEEEEccCC-CeE
Q 021459           14 HFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH------------RFVGHSEGISDLAWSSDS-HYI   79 (312)
Q Consensus        14 ~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l   79 (312)
                      .|+.|.. -...|++++|++.|..|+..+..-..+|+|-...+...            ..+||...+++-+|+|.. ..+
T Consensus       205 ~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~F  284 (641)
T KOG0772|consen  205 SFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEF  284 (641)
T ss_pred             hhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccce
Confidence            3445543 35689999999999988888777889999876554332            336798999999999974 588


Q ss_pred             EEEcCCCeEEEEeCCCCceeeeeee-----cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCc-
Q 021459           80 CSASDDRTLRIWDARTPFDCLKTLR-----GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSM-  150 (312)
Q Consensus        80 ~~~~~d~~v~~wd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~-  150 (312)
                      ++++.||++++||+++....++.++     +..-.+..++|++|++.+++|..||+|.+|+..+...   ...-.+|.. 
T Consensus       285 lT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g  364 (641)
T KOG0772|consen  285 LTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG  364 (641)
T ss_pred             EEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence            8999999999999987654443332     2234678899999999999999999999999854322   233356765 


Q ss_pred             -CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEccc-CCCCcEEEEEECCCCCEEEEEec------CCeEEEEEc
Q 021459          151 -PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTLID-DKDPAVSFAKFSPNGKFILVGTL------DSTLKLWNY  221 (312)
Q Consensus       151 -~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v~d~  221 (312)
                       .|+++.|+++|++|++-+.|+++++||+++-+. +....+ ......+.++|+|+.+++++|+.      .|.+.+||.
T Consensus       365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence             799999999999999999999999999997542 222111 11223455779999999999853      467999998


Q ss_pred             CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE
Q 021459          222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  265 (312)
                      .+-+.+..+.-.  ...++.+. +.+.-+.|..|+.||.+++|-
T Consensus       445 ~t~d~v~ki~i~--~aSvv~~~-WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  445 MTLDTVYKIDIS--TASVVRCL-WHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cceeeEEEecCC--CceEEEEe-ecchhhheeeecCCCceEEEE
Confidence            776665544322  23344444 446667788899999999973

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=175.03  Aligned_cols=248  Identities=27%  Similarity=0.507  Sum_probs=202.0

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW  134 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w  134 (312)
                      .+...+.+|.++|+.++-......+.+++.|.+.++|.++++ .++..+.||.+.|.++.|++.+.++++++.|++-.+|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            345667899999999998877779999999999999999986 7888999999999999999999999999999999999


Q ss_pred             E------cCCC----------------------------------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          135 E------VKTG----------------------------------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       135 d------~~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      .      +...                                  .++..+.+|...|.+..|...|+.+++++.|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            6      1110                                  12345677888899999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      +||+.++..+..+.+ ++.....++-+|..+++++++.|.+.++||++.. ..+.+|++|.......  .|  ..+..++
T Consensus       298 lwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~--vF--~~dd~vV  372 (481)
T KOG0300|consen  298 LWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV--VF--NTDDRVV  372 (481)
T ss_pred             eeeeccCceeccccC-cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE--EE--ecCCcee
Confidence            999999998876654 5566777778999999999999999999999854 3467889998864332  22  2456899


Q ss_pred             EeecCCeEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          254 SGSEDNCVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|++|.+|++||+++. ..+.++. -..+++.++.+..++.++.- .| ...||+|+++
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiP-hD-NRqvRlfDln  428 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIP-HD-NRQVRLFDLN  428 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEec-cC-CceEEEEecC
Confidence            9999999999999764 4455555 35688999998776666654 34 4799999974

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=179.38  Aligned_cols=263  Identities=21%  Similarity=0.341  Sum_probs=196.1

Q ss_pred             EeCC-CeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCCceeeeeeecccccEEEEEEe
Q 021459           40 ASLD-KTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASD-DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN  116 (312)
Q Consensus        40 ~~~d-~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~  116 (312)
                      ++.| .++.+||+.++..+..+++- ...-.++..- .+.+++++.. ...+.+|.+....+.. ...--.+++.++.-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence            3344 45899999999888777654 2211222111 2356666544 4578899886543322 222245789999999


Q ss_pred             cCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC--------ceeeEcc
Q 021459          117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG--------ACLKTLI  188 (312)
Q Consensus       117 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~  188 (312)
                      |.|.+++.|+..|.|++|.+.+|..+..+.+|..+|+++.|+-||.+|++|+.||.|.+|++..-        .......
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999976321        1112223


Q ss_pred             cCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          189 DDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       189 ~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .++.-.++.+...+.  ...|++++.|.++++||+..+..+..+.-...    +.++...|.++.+..|+++|.|.+.++
T Consensus       171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s----i~av~lDpae~~~yiGt~~G~I~~~~~  246 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS----IKAVALDPAERVVYIGTEEGKIFQNLL  246 (476)
T ss_pred             ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc----ceeEEEcccccEEEecCCcceEEeeeh
Confidence            445556666666554  46899999999999999999988776653322    333444577889999999999999877


Q ss_pred             Cch----------------heeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          267 QQK----------------TMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       267 ~~~----------------~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ...                +.+..+.||..  +|+||+.+-||..|++|+.|  +.|.||++
T Consensus       247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--g~VcvWdi  306 (476)
T KOG0646|consen  247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--GKVCVWDI  306 (476)
T ss_pred             hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--CCEEEEec
Confidence            432                22345668887  99999999999999999855  58999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=6.1e-25  Score=187.64  Aligned_cols=286  Identities=20%  Similarity=0.341  Sum_probs=227.0

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEE--e
Q 021459           17 TLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIW--D   92 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w--d   92 (312)
                      ++..-.+.|++++|.-||+ .+++|+..|.+-+||++..+++.... .|.++|....|.|....+++++.|..+++|  |
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence            3333358999999999997 57778888999999999988877666 688888888898888888888888887777  4


Q ss_pred             CCCC----------------------------------------------------c--------------------eee
Q 021459           93 ARTP----------------------------------------------------F--------------------DCL  100 (312)
Q Consensus        93 ~~~~----------------------------------------------------~--------------------~~~  100 (312)
                      ...+                                                    .                    +.+
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i  398 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI  398 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence            1000                                                    0                    000


Q ss_pred             --------------------------ee-----------------eecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459          101 --------------------------KT-----------------LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus       101 --------------------------~~-----------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                                                .+                 ++.....+.+++.++-|++.+.|...|.|.+|+++
T Consensus       399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ  478 (910)
T KOG1539|consen  399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ  478 (910)
T ss_pred             eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence                                      00                 00011235677788888999999999999999999


Q ss_pred             CCeEEEEe---eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          138 TGKCTRVI---RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       138 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      +|-....+   ..|..+|+.++...-++.+++++.+|.+++||..+...+..+..  +..+..+..+.....++++..|-
T Consensus       479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeeehhhhhhhhcCce
Confidence            99877777   58999999999998889999999999999999988776555432  23344555666777889999999


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI  294 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  294 (312)
                      .|+++|..+.+.++.+.+|.+.....   ...++|++|++++.|++|++||+.++.++.-+. -..++..+.++|+|.+|
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~---~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~L  632 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDM---TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFL  632 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeee---EeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEE
Confidence            99999999999999999998875443   345899999999999999999999998887664 46788999999999999


Q ss_pred             EEeeecCCeeEEEEe
Q 021459          295 ASAGLDGDRTVRVWV  309 (312)
Q Consensus       295 ~~~~~dgd~~v~iw~  309 (312)
                      ||+..|+ .-|.+|-
T Consensus       633 AT~Hvd~-~gIylWs  646 (910)
T KOG1539|consen  633 ATVHVDQ-NGIYLWS  646 (910)
T ss_pred             EEEEecC-ceEEEEE
Confidence            9999875 5788884

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=179.79  Aligned_cols=254  Identities=23%  Similarity=0.417  Sum_probs=202.3

Q ss_pred             EEEEEeC-CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEE
Q 021459           36 LLASASL-DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN  114 (312)
Q Consensus        36 ~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~  114 (312)
                      +++++.. -..+.+|.+..........--++.|.+++-+|+|.+|+.|...|.+++|.+.++ ..+..+.+|=..|.|+.
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLK  130 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEE
Confidence            4444433 235778877655443322334678999999999999999989999999999986 55666788999999999


Q ss_pred             EecCCCEEEEeecCCcEEEEEcC---------CCeEEEEeeecCcCeEEEEEccCC--CEEEEeeCCCeEEEEeCCCCce
Q 021459          115 FNPQSNLIVSGSFDESIRIWEVK---------TGKCTRVIRAHSMPVTSVHFNRDG--SLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       115 ~~~~~~~l~s~~~dg~i~~wd~~---------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      |+.|+.++++|+.||.|.+|++.         +-+....+..|.-+|+++...+.|  .++++++.|.++++||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            99999999999999999999863         234567788899999999987753  5899999999999999999988


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC----------------CcEEEEEEccCC--ceeEEEEEEE
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA----------------GKFLKIYTGHTN--KKYCITSTFS  245 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------------~~~~~~~~~~~~--~~~~~~~~~~  245 (312)
                      +.++.  .+..+..++.+|.+..+.+|+.+|.|.+.++..                +..+..+.+|..  ...|+   ..
T Consensus       211 Llti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL---ai  285 (476)
T KOG0646|consen  211 LLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL---AI  285 (476)
T ss_pred             eEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE---EE
Confidence            87764  356688889999999999999999999887643                223455667766  44444   34


Q ss_pred             ccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      ..+|.+|++|+.||.|.+||+.+.++++++....++|+.+.+.|-....+
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence            46799999999999999999999999988876678899999976544333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=2e-25  Score=178.68  Aligned_cols=293  Identities=21%  Similarity=0.273  Sum_probs=212.3

Q ss_pred             ceeeecccccceEEEEECCCC--CEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccC-CCeEEEEcCCC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDG--TLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSD-SHYICSASDDR   86 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~   86 (312)
                      +......|...|++++|+|-.  +++|+|..-|.|-+||+.+    ..-+..+..|..+|.++.|+|. ...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            334456689999999999955  4889999999999999952    2234566789999999999995 46888899999


Q ss_pred             eEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEEccC-CCE
Q 021459           87 TLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHFNRD-GSL  163 (312)
Q Consensus        87 ~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~  163 (312)
                      +|++-|++.... .+............+.|+.+...++.+..=|...+||++++.. ...+.-|...|..++++|. ..+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            999999876421 1122222334556777888777777777777999999998765 4556678889999999994 457


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeE-c--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC----CCcEEEEEEccCC-
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKT-L--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS----AGKFLKIYTGHTN-  235 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~~~~~-  235 (312)
                      +++++.|++.+|||+++-..... +  ...+...+..+.|+|++..|++.+.|..|+|||..    .......+..... 
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t  417 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT  417 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence            89999999999999986432221 1  12355678889999999999999999999999973    2222222221111 


Q ss_pred             --ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc-cceEEE-EEcCCCceEEEeeecCCeeEEEE
Q 021459          236 --KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT-DSVISV-TCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       236 --~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l-~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                        ....+.. .+.|+..+++.|..-..|-++|-+.++++..+.... ..|.++ .|||.+..+++||..+ +.|.||
T Consensus       418 ~RwlT~fKA-~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~-Gki~vf  492 (498)
T KOG4328|consen  418 GRWLTPFKA-AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS-GKIYVF  492 (498)
T ss_pred             cccccchhh-eeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc-ceEEEE
Confidence              1112233 334678899999999999999998888766654433 356665 7999998788777543 455555

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.3e-25  Score=186.66  Aligned_cols=295  Identities=21%  Similarity=0.359  Sum_probs=218.0

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ...+.||.+.|..+.|+|.|++|++.|.|.+-|++..-..    -.+.+-+-|...++|+++-+....+++|.+++.+++
T Consensus       354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv  433 (764)
T KOG1063|consen  354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV  433 (764)
T ss_pred             ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence            3456899999999999999999999999999999854421    233444568889999999987667888888889998


Q ss_pred             EeCCC-------------------------------------------Cce-----------------------------
Q 021459           91 WDART-------------------------------------------PFD-----------------------------   98 (312)
Q Consensus        91 wd~~~-------------------------------------------~~~-----------------------------   98 (312)
                      |+...                                           +..                             
T Consensus       434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t  513 (764)
T KOG1063|consen  434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT  513 (764)
T ss_pred             ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence            86520                                           000                             


Q ss_pred             ---eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           99 ---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        99 ---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                         .+..+.||...|.+++.+|++++++++....     .|++|+..+-...+.++.|...|+.++|+|||++|++.+.|
T Consensus       514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence               0123567888899999999999999987653     48999998877777889999999999999999999999999


Q ss_pred             CeEEEEeCCCCceee---EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--cEEEEE--EccCCceeEEEEE
Q 021459          171 GTCKIWDAGEGACLK---TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--KFLKIY--TGHTNKKYCITST  243 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~--~~~~~~~~~~~~~  243 (312)
                      +++.+|...+.....   .....+...+..+.|+|++.++++++.|+.|++|.....  +.+..+  ..+......+...
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            999999875432211   113456677888899999999999999999999998776  333221  1122222223222


Q ss_pred             EE--ccCCcEEEEeecCCeEEEEECCch---------he---eecccCCccceEEEEEcCC--------Cc--eEEEeee
Q 021459          244 FS--VTNGKYIVSGSEDNCVYVWDLQQK---------TM---IQKLDGHTDSVISVTCHPT--------EN--KIASAGL  299 (312)
Q Consensus       244 ~~--~~~~~~l~~~~~dg~i~iwd~~~~---------~~---~~~~~~h~~~v~~l~~~p~--------~~--~l~~~~~  299 (312)
                      ..  ...+..++.|-+.|.|.+|.....         ..   .....+|...|+.+.|.|.        ..  .|++++.
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~  753 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD  753 (764)
T ss_pred             ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence            11  223457899999999999985411         11   1122357789999999976        23  3577774


Q ss_pred             cCCeeEEEEeec
Q 021459          300 DGDRTVRVWVQD  311 (312)
Q Consensus       300 dgd~~v~iw~~~  311 (312)
                        |..+||++++
T Consensus       754 --D~~vri~nv~  763 (764)
T KOG1063|consen  754 --DESVRIFNVD  763 (764)
T ss_pred             --cceeEEeecc
Confidence              5789998875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-24  Score=181.06  Aligned_cols=237  Identities=21%  Similarity=0.357  Sum_probs=196.2

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC  141 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  141 (312)
                      .+.+|.+++|+.+.+.||.+-.+|.|.+|++....-+...+.++ +..|..++|. ++..|++.+.+|.|..||+.+++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence            35789999999999999999999999999998866555555554 4678999999 466888999999999999999999


Q ss_pred             EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459          142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN  220 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d  220 (312)
                      ...+.....+|++++.+|.+..++.|+.||.+..++...+.... +.+..+...+-.+.|+|++..+++|+.||.|++||
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence            99998889999999999999999999999988888887766543 23344456788899999999999999999999999


Q ss_pred             cCCCcEEEEEEc----cCC-ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          221 YSAGKFLKIYTG----HTN-KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       221 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      ...+..+.....    -.. ...++-...+. ....|++|...|.|.+||...+++++.+..|.+.|.+++..+++.++.
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf  261 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF  261 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence            999887663221    111 22222222222 355899999999999999999999999999999999999999999999


Q ss_pred             EeeecC
Q 021459          296 SAGLDG  301 (312)
Q Consensus       296 ~~~~dg  301 (312)
                      ++|.|+
T Consensus       262 saGvd~  267 (691)
T KOG2048|consen  262 SAGVDP  267 (691)
T ss_pred             EccCCC
Confidence            999886

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.5e-23  Score=171.45  Aligned_cols=265  Identities=16%  Similarity=0.165  Sum_probs=189.0

Q ss_pred             eeeecccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEe
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWD   92 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd   92 (312)
                      .+++..|. .+.+++|+|+++.+ ++++.++.|++|+..+++.+..+..+. .+..++|+|+++.++++ ..++.+++||
T Consensus        24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVID  101 (300)
T ss_pred             EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence            34455444 36789999999976 567788999999999888776665443 35678999999877654 5689999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC-cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHD  170 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d  170 (312)
                      +.+. +.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++....... ......+.|+|+++++++ +..+
T Consensus       102 ~~~~-~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  178 (300)
T TIGR03866       102 IETR-KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG  178 (300)
T ss_pred             CCCC-eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence            9874 33444432 23457899999999999888765 467789988776554432 234577899999998854 4568


Q ss_pred             CeEEEEeCCCCceeeEcccCC------CCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDK------DPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST  243 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
                      +.+.+||+.+++....+....      ......+.++|++++++++ +.++.+.+||.++++.+...... .....+   
T Consensus       179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~---  254 (300)
T TIGR03866       179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-QRVWQL---  254 (300)
T ss_pred             CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-CCcceE---
Confidence            999999999887655442111      1112346689999986554 55678999999888876554322 222222   


Q ss_pred             EEccCCcEEEEe-ecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          244 FSVTNGKYIVSG-SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       244 ~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      ...+++++|+++ +.+|.|.+||+.+++.+..++.. ...+.++++|
T Consensus       255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            344778888775 56999999999999988888754 5558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-24  Score=166.10  Aligned_cols=263  Identities=25%  Similarity=0.387  Sum_probs=189.8

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEEe
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIWD   92 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd   92 (312)
                      .+|.+-|+++.|.+-|+++||++.|++++|||...    .......+.|.+.|..+.|.+.  |+.+|+|+.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47999999999999999999999999999999543    4566778999999999999763  89999999999999997


Q ss_pred             CCCC--------ceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEE------EEee-------ecC
Q 021459           93 ARTP--------FDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCT------RVIR-------AHS  149 (312)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~------~~~~-------~~~  149 (312)
                      -...        .....++......|..+.|.|.  |-.+++++.||.+++|+....-.+      ..++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            5211        0122344455678999999995  457999999999999986543211      1122       245


Q ss_pred             cCeEEEEEccC---CCEEEEeeCC-----CeEEEEeCCCCc----eeeEcccCCCCcEEEEEECCCC----CEEEEEecC
Q 021459          150 MPVTSVHFNRD---GSLIVSGSHD-----GTCKIWDAGEGA----CLKTLIDDKDPAVSFAKFSPNG----KFILVGTLD  213 (312)
Q Consensus       150 ~~v~~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d  213 (312)
                      .+..|+.|+|.   ..+|++|+.+     +.++||...++.    .+.++. .+...+..++|.|+-    .+||+++.|
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecC
Confidence            56789999973   4577877766     478888765433    223333 456678889999963    578999999


Q ss_pred             CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459          214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      | |+||.+...... +.+                 .+.++ ...     +.++ .-+.+..+.+|.+.|+++.|+-.|..
T Consensus       249 g-v~I~~v~~~~s~-i~~-----------------ee~~~-~~~-----~~~l-~v~~vs~~~~H~~~VWrv~wNmtGti  302 (361)
T KOG2445|consen  249 G-VRIFKVKVARSA-IEE-----------------EEVLA-PDL-----MTDL-PVEKVSELDDHNGEVWRVRWNMTGTI  302 (361)
T ss_pred             c-EEEEEEeeccch-hhh-----------------hcccC-CCC-----cccc-ceEEeeeccCCCCceEEEEEeeeeeE
Confidence            9 999987542210 000                 00000 000     0111 12456678899999999999999999


Q ss_pred             EEEeeecCCeeEEEEee
Q 021459          294 IASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~  310 (312)
                      |++.|.|  +.||+|..
T Consensus       303 LsStGdD--G~VRLWka  317 (361)
T KOG2445|consen  303 LSSTGDD--GCVRLWKA  317 (361)
T ss_pred             EeecCCC--ceeeehhh
Confidence            9999866  59999975

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.3e-25  Score=185.74  Aligned_cols=237  Identities=23%  Similarity=0.417  Sum_probs=193.9

Q ss_pred             eeeecccccceEE-EEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           15 FKTLTAHSRAVSC-VKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        15 ~~~~~~h~~~v~~-~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ...+.+|.+-|.+ ++|.+ ++-+|++|+.|+.|.+|...+..++..+++|...|.+++...++. +++||.|.++++|-
T Consensus        50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~  128 (745)
T KOG0301|consen   50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR  128 (745)
T ss_pred             ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence            3456778887777 88875 556799999999999999999999999999999999999888887 89999999999997


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      ..   ++...+.+|...|+++..-|++ .++||+.|.+|++|.-  ++.++++.+|...|+.+++-+++ .|++++.||.
T Consensus       129 ~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~  201 (745)
T KOG0301|consen  129 IG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS  201 (745)
T ss_pred             ch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCce
Confidence            64   3455588999999999999987 8999999999999974  77888999999999999998765 5899999999


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      |++|++ ++.++.+..++. .-+.++...+++..+++++.|+++++|+..  ++...+.-.....++..+   .++|+ +
T Consensus       202 Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~---L~NgD-I  273 (745)
T KOG0301|consen  202 IRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV---LLNGD-I  273 (745)
T ss_pred             EEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE---eeCCC-E
Confidence            999999 677777765543 445555667778899999999999999865  666666654444444332   24554 6


Q ss_pred             EEeecCCeEEEEECC
Q 021459          253 VSGSEDNCVYVWDLQ  267 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~  267 (312)
                      ++|+.||.|++|-..
T Consensus       274 vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  274 VVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeccCceEEEEEec
Confidence            788999999999654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.6e-27  Score=199.12  Aligned_cols=242  Identities=25%  Similarity=0.498  Sum_probs=206.2

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ...++.+..|...|.++..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+++..+|++|+.+|+|++|
T Consensus        18 ~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   18 VWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW   97 (825)
T ss_pred             cccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence            34556778899999999997788999999999999999988777777789999999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      |++.. +.++++.+|...+.++.|+|-+.+.++++.|+.+++||++...|...+..|...+..+.|+|+|++++.++.|.
T Consensus        98 DleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen   98 DLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             ehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            99875 45778899999999999999999999999999999999998888999999998999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .+++||+..|+....+..+ ...+..+.++|..-+++.|+.|+++++||+++-+.+.........   +.+..+.++++.
T Consensus       177 tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~---v~~~~fn~~~~~  252 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG---VRSLAFNPDGKI  252 (825)
T ss_pred             eeeeecccccccccccccc-cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC---ceeeeecCCcee
Confidence            9999999999988877543 445666779999989999999999999999876655544333333   333344466777


Q ss_pred             EEEeecC
Q 021459          252 IVSGSED  258 (312)
Q Consensus       252 l~~~~~d  258 (312)
                      +++|-..
T Consensus       253 ~~~G~q~  259 (825)
T KOG0267|consen  253 VLSGEQI  259 (825)
T ss_pred             eecCchh
Confidence            7766544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2.5e-23  Score=168.84  Aligned_cols=283  Identities=19%  Similarity=0.321  Sum_probs=208.3

Q ss_pred             ecccccceEEEEECC--CCCEEEEE--eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           18 LTAHSRAVSCVKFSN--DGTLLASA--SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~--~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +..-+..|.|++||+  .|.+|+..  +.+..+.|||.+.+......+...+.|....|+|.+..|+.....+.+.+|+.
T Consensus       150 ~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~  229 (626)
T KOG2106|consen  150 IGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTL  229 (626)
T ss_pred             eccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence            334678899999997  45566554  55678899999998888888888889999999997665555556889999998


Q ss_pred             CCCce--eeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           94 RTPFD--CLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        94 ~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      +.+..  ....++++ ...|.|++|.+++. +++|..+|.|.+|+..+.+..+...+|...|.++....+|.++ +|+.|
T Consensus       230 ~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKD  307 (626)
T KOG2106|consen  230 RGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKD  307 (626)
T ss_pred             cCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCcc
Confidence            76422  11223322 36799999999875 5789999999999998888877777999999999999999755 59999


Q ss_pred             CeEEEEeCCCCce-----------eeEcccC----------------------------CCCcEEEEEECCCCCEEEEEe
Q 021459          171 GTCKIWDAGEGAC-----------LKTLIDD----------------------------KDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       171 ~~i~iwd~~~~~~-----------~~~~~~~----------------------------~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      +.|..||-.-.+.           ++.+...                            +......++.+|+.+++++++
T Consensus       308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g  387 (626)
T KOG2106|consen  308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG  387 (626)
T ss_pred             ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence            9999998321110           1111100                            111223356788999999999


Q ss_pred             cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC
Q 021459          212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~  291 (312)
                      .|+.+++|+  ..+.+....-. .+   ..+....|.+ .+|.|...|.-.+.|.++..++..-.. +.++++++++|+|
T Consensus       388 qdk~v~lW~--~~k~~wt~~~~-d~---~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLEWTKIIE-DP---AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG  459 (626)
T ss_pred             CcceEEEcc--CCceeEEEEec-Cc---eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence            999999999  33333222111 11   1222334556 999999999999999998766655444 7899999999999


Q ss_pred             ceEEEeeecCCeeEEEEeecC
Q 021459          292 NKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       292 ~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      .+||.|+  .|+.|.|+.+++
T Consensus       460 ~~lAvgs--~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  460 AFLAVGS--HDNHIYIYRVSA  478 (626)
T ss_pred             CEEEEec--CCCeEEEEEECC
Confidence            9999999  556899998864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.1e-25  Score=182.44  Aligned_cols=238  Identities=19%  Similarity=0.353  Sum_probs=192.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      ..+.|.++.+.|||+.|++|+.-.++.|||+..-....+  +.......+.++.+||.+..++|+.||.|.|||+.+. .
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~  542 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-T  542 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-e
Confidence            456788999999999999999999999999986544332  2223345677899999999999999999999999874 6


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      .++.++||.+.+.|+..++||..|.+|+.|.+|+.||+++++.+.... ....|.++..+|++.++++|..++.+.+...
T Consensus       543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec
Confidence            688999999999999999999999999999999999999887554322 2457999999999999999999999988876


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      ...+..  ....++..+..+.|.+.|+++++.+.|+.+..|...-|..+......    ..+.++....+.++++||+.|
T Consensus       622 skp~ky--qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~----SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  622 SKPEKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES----SSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             CCccce--eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc----CcceeeeeccCceEEEecCCC
Confidence            543322  23446778889999999999999999999999987777655443222    223444444678999999999


Q ss_pred             CeEEEEEC
Q 021459          259 NCVYVWDL  266 (312)
Q Consensus       259 g~i~iwd~  266 (312)
                      ....+|.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            99988864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.6e-24  Score=184.80  Aligned_cols=244  Identities=22%  Similarity=0.444  Sum_probs=194.7

Q ss_pred             eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459           62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC  141 (312)
Q Consensus        62 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  141 (312)
                      .|+.+-+.++|.|+|.+|++|+.||.|++|+.....+....+.-+...|.+++  .++++|++++.+++|.+|...+++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ecccceEEeeccceEEEeeCCCCCc
Confidence            58888999999999999999999999999987654232333333556666665  4456999999999999999988876


Q ss_pred             EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      -..+.....++++++++-+|++++.|+.|-.|++.++.+....+.+.+ ++..+..+.++|++++||+.+-||.|++||+
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            555555677899999999999999999999999999887766666544 5677888999999999999999999999999


Q ss_pred             CCCcEEEEEEccCC------ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC--CccceEEEEEcCCCce
Q 021459          222 SAGKFLKIYTGHTN------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG--HTDSVISVTCHPTENK  293 (312)
Q Consensus       222 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~  293 (312)
                      +++...+.+.+-..      ...+....| .|++..++....|+.|.+|+....+....+..  +...+..++|+|.|++
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            98877655543211      122333344 46666777778899999999998888777654  4455999999999999


Q ss_pred             EEEeeecCCeeEEEEeec
Q 021459          294 IASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~~  311 (312)
                      ||+++.||  .|.||+++
T Consensus       247 iAAs~~~g--~I~vWnv~  262 (933)
T KOG1274|consen  247 IAASTLDG--QILVWNVD  262 (933)
T ss_pred             EeeeccCC--cEEEEecc
Confidence            99999775  89999986

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.3e-22  Score=164.63  Aligned_cols=273  Identities=17%  Similarity=0.311  Sum_probs=205.6

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      ++-|.|+.|.++|. ++||..+|.|.||+..+.+.......|.+.|.+++...+|.+|- |+.|+.|..||-.-......
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~  323 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET  323 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence            36899999999887 56999999999999887776666679999999999999997665 99999999999322111122


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (312)
                      .+....+++..++-.  ..-++.|...+.|-.=.++++..+ ..++|......++.+|+.+++++++.|+.+++|+  ..
T Consensus       324 elPe~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEG--KGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             cCchhcCCeeEEecC--CCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence            334455677766533  222666766666655556655443 4457888999999999999999999999999999  33


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  261 (312)
                      +..-+..  ......++.|+|.| .+++|+..|...+.|.++...+..... ..   .+.+....++|.+||.|+.|+.|
T Consensus       399 k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~---~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  399 KLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE---QLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             ceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CC---ceEEEEEcCCCCEEEEecCCCeE
Confidence            3332222  23456778899999 999999999999999988766655443 22   35556667899999999999999


Q ss_pred             EEEECCch-heeeccc-CCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          262 YVWDLQQK-TMIQKLD-GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       262 ~iwd~~~~-~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++|.+... ..+.... .+.++|..|.|++|+++|.+-|  +|-.+..|..
T Consensus       472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S--~d~eiLyW~~  520 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS--GDYEILYWKP  520 (626)
T ss_pred             EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc--CceEEEEEcc
Confidence            99988643 3333322 2348999999999999999988  6678999954

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6e-25  Score=171.34  Aligned_cols=248  Identities=21%  Similarity=0.370  Sum_probs=189.6

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      .+++++.+|.+.|..++++.  ..++++|.|++|+.|.... .+++.+.+ ...+..+.-+..+..++||+.  .|.|||
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD  173 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD  173 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence            45678999999999999987  6788999999999998765 35555554 344566666666778888865  588999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      .+.. .+++.+.=..+.|.++.|+|-. ..|++++.|++|.+||+++.++++.+.. ...-+.++|+|..--|+++++|.
T Consensus       174 ~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  174 EQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             cccC-CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccc
Confidence            8653 3455555456789999999965 5678888999999999999887765432 33457899999888899999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .+..+|++.-........++...+..+.|+|.|+-+++|+.|.+|+||..+.+....++  |+..-..+.+..+..+.++
T Consensus       252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccE
Confidence            99999998755444445566677888999999999999999999999998877654443  2222222333344467899


Q ss_pred             EEEeecCCeEEEEECCchh
Q 021459          252 IVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~  270 (312)
                      +++||+|+.|++|..+..+
T Consensus       330 i~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  330 IISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             EEecCCCcceeeeecchhh
Confidence            9999999999999875433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.93  E-value=1.4e-23  Score=175.91  Aligned_cols=271  Identities=21%  Similarity=0.403  Sum_probs=203.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .|+.++|-|||..|+.+.. ..+.+||.+.+.++..+++|++.|++++|+.+|+.+++|+.|+.|.+|+..-. ..+  -
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~L--k   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GIL--K   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-cee--e
Confidence            7899999999998877654 47999999999999999999999999999999999999999999999986432 122  2


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      ..|.+.|.|+.|+|-.+.+++++... .-+|........+ . .....+.+++|..||++++.|..+|+|.+-+-.....
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            35999999999999999999988653 5678765432211 1 1234678999999999999999999999986543332


Q ss_pred             ee-EcccCCCCcEEEEEECCCC-----CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          184 LK-TLIDDKDPAVSFAKFSPNG-----KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       184 ~~-~~~~~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      .+ ...+...+.+..++|+|+.     ..+++.....++.++.+. |+.+..-..-.-.+.|+.   ..++|++++.|+.
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis---Yf~NGEy~LiGGs  242 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS---YFTNGEYILLGGS  242 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe---eccCCcEEEEccC
Confidence            22 2233455678888898864     356666666666666653 333321111122233443   2378999999999


Q ss_pred             CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       258 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      |+.+.+|- +.+..+.++.....+|+.++.+|+++.++.|.-||  ++--+
T Consensus       243 dk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG--TiACy  290 (1081)
T KOG1538|consen  243 DKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG--TIACY  290 (1081)
T ss_pred             CCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccC--eeehh
Confidence            99999995 55667777777788999999999999999999776  55443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1e-22  Score=170.94  Aligned_cols=294  Identities=23%  Similarity=0.413  Sum_probs=218.2

Q ss_pred             eeceeeecccccceEEEEECCCCC---EEEEEeCCCeEEEEeCCCcc---------------------eEEE--------
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGT---LLASASLDKTVIIWSASSLA---------------------LVHR--------   59 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~---------------------~~~~--------   59 (312)
                      ++....+.||++-|.+++|...+.   +||+++.|..||+|.+.-+.                     .+..        
T Consensus       181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence            455678899999999999986443   78999999999999653211                     1111        


Q ss_pred             --eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce------eeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459           60 --FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI  131 (312)
Q Consensus        60 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  131 (312)
                        +.||.+.|+++.|+|++..|++++.|.++.+|.......      .+..+.+....-+..-|+|+++.+++-+..|..
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence              238999999999999999999999999999998754311      122233344556788899999999999999999


Q ss_pred             EEEEcCCC---eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC-------------------------C---
Q 021459          132 RIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-------------------------E---  180 (312)
Q Consensus       132 ~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-------------------------~---  180 (312)
                      ++|..+..   .....+.+|...|++++|+|.|+++++.+.|.+-++|-.-                         +   
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            99984322   2233556899999999999999999999999876665311                         0   


Q ss_pred             -------CceeeEc----------------------------------------c-------------------------
Q 021459          181 -------GACLKTL----------------------------------------I-------------------------  188 (312)
Q Consensus       181 -------~~~~~~~----------------------------------------~-------------------------  188 (312)
                             .+.++.+                                        .                         
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence                   0000000                                        0                         


Q ss_pred             ---------------------cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          189 ---------------------DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       189 ---------------------~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                                           ..++..+..++.+|+++++|++...     ..|++|+..+-.....+.+|.-   .++-
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL---TVT~  577 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL---TVTR  577 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce---EEEE
Confidence                                 0022345567889999999998654     3589998776666666666654   3555


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchh----eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKT----MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..+.+++++|++.+.|.++.+|...+..    .....+.|..-|++..|+|++.+++|+|  -|.+|++|..
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS--RDK~VkVW~~  647 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS--RDKKVKVWEE  647 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec--CCceEEEEec
Confidence            5666899999999999999999875432    1344788999999999999999999999  5579999975

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=175.02  Aligned_cols=253  Identities=19%  Similarity=0.349  Sum_probs=184.3

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCC-CeEEEEcCCCeEEE
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDS-HYICSASDDRTLRI   90 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~   90 (312)
                      .++....|...|..++|.|....|++++.|.++++||+...++...  +.+|...|.++||.|.. ..+++|+.||.+.|
T Consensus        92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            3556678999999999999777899999999999999999887766  88999999999999964 58899999999999


Q ss_pred             EeCCCCc----------------------e----eeeeeecccccEEE---EEEecCCCEEEEeec-CCcEEEEEcCCCe
Q 021459           91 WDARTPF----------------------D----CLKTLRGHSDFVFC---VNFNPQSNLIVSGSF-DESIRIWEVKTGK  140 (312)
Q Consensus        91 wd~~~~~----------------------~----~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~-dg~i~~wd~~~~~  140 (312)
                      ||++...                      +    .+...+.+...|.+   +-+..|...|++++. |+.|+|||++...
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            9986321                      0    01112234444555   666788899999888 9999999998765


Q ss_pred             EEEEe--------eec---CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcE-EEEEECCCCCE
Q 021459          141 CTRVI--------RAH---SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAV-SFAKFSPNGKF  206 (312)
Q Consensus       141 ~~~~~--------~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~  206 (312)
                      +....        ..|   ...+.++.....|.++++.+.|+.|.+|++.+...  ...+.+.....+ .--..+|++.+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            43221        112   22466777777788888888899999999986432  111111111111 11247899999


Q ss_pred             EEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          207 ILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       207 l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      +++|+.|...++|.+.+.+. ...+.+|.....++...  +..-.-++++++|-.+++|++.+
T Consensus       332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~--pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL--PSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec--cccCCCceeeccCcceEEEeccC
Confidence            99999999999999877653 44566777765555332  32334467779999999999854

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=5.1e-23  Score=162.79  Aligned_cols=286  Identities=21%  Similarity=0.341  Sum_probs=202.8

Q ss_pred             ccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCc---------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           22 SRAVSCVKFSNDGT-LLASASLDKTVIIWSASSL---------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        22 ~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ..+|..+.|.+... .++||+.|..|++|-+...         +.+..+..|..+|+.+.|+|+|++||+|+++|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999998666 9999999999999966432         2345567899999999999999999999999999999


Q ss_pred             eCC--------C-----C--ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEE
Q 021459           92 DAR--------T-----P--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH  156 (312)
Q Consensus        92 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  156 (312)
                      ...        +     .  ....+.+.+|...+..++|+|+++.+++++.|.++++||+..|+....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            754        1     1  123456678999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCEEEEeeCCCeEEEEeCCCCceeeEcc----------cCCCC------------cEEEEEECCCCCEEEEEec--
Q 021459          157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI----------DDKDP------------AVSFAKFSPNGKFILVGTL--  212 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~------------~~~~~~~~~~~~~l~~~~~--  212 (312)
                      |.|-++++++-+.|...+.+.....+.+....          ..+..            -...++|+|+|.+|++...  
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~  252 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF  252 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence            99999999999988876666654433221110          00000            1223579999999988532  


Q ss_pred             --C-----CeEEEEEcCCCc-EEEEEEccCCceeEEEE---------------EEEccCCcEEEEeecCCeEEEEECCch
Q 021459          213 --D-----STLKLWNYSAGK-FLKIYTGHTNKKYCITS---------------TFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       213 --d-----~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                        .     +..++|+...-+ ....+.........+.+               .+..+-...+|.+ ....|++||.++-
T Consensus       253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~  331 (434)
T KOG1009|consen  253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTL  331 (434)
T ss_pred             eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccc
Confidence              1     223455432111 11111111111111110               1111222234444 4557999999876


Q ss_pred             heeeccc-CCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          270 TMIQKLD-GHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       270 ~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      .++.... -|-..++.++|+++|..|+..|.||-.++.=+
T Consensus       332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence            6655443 37789999999999999999999997765443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-22  Score=162.48  Aligned_cols=275  Identities=21%  Similarity=0.362  Sum_probs=190.3

Q ss_pred             EEEECCCCCEEEEEeCCC---eE--EEEeCCCcceEEEeeecc----CCEEEEEEcc-------CCCeEEEEcCCCeEEE
Q 021459           27 CVKFSNDGTLLASASLDK---TV--IIWSASSLALVHRFVGHS----EGISDLAWSS-------DSHYICSASDDRTLRI   90 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~---~i--~vw~~~~~~~~~~~~~~~----~~v~~~~~~~-------~~~~l~~~~~d~~v~~   90 (312)
                      .+..-|..++|+.+..+.   .+  +||+-....   .+..|.    ....|++|..       .|+++|.|..|..|.|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            455667777777765443   33  444433211   122222    2224566642       2679999999999999


Q ss_pred             EeCCCCc--e---ee---------------eeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecC
Q 021459           91 WDARTPF--D---CL---------------KTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHS  149 (312)
Q Consensus        91 wd~~~~~--~---~~---------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  149 (312)
                      ||+.-..  .   .+               ....+|++.|..++|+.. .+.|++||.|.+|++||+.++++..++..|.
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            9974210  0   00               012368888888888765 4689999999999999999999999999899


Q ss_pred             cCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCC-cE
Q 021459          150 MPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAG-KF  226 (312)
Q Consensus       150 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~-~~  226 (312)
                      .+|.++.|+| ...++++|+.|+++.+.|.|......... .....+..+.|.|... .+++++.||+|+-+|.|+. +.
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~  365 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP  365 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence            9999999999 45688999999999999998522211111 1245577788888654 6677789999999999875 78


Q ss_pred             EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc---cceEEEEEcCCCce-EEEeeecCC
Q 021459          227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT---DSVISVTCHPTENK-IASAGLDGD  302 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~p~~~~-l~~~~~dgd  302 (312)
                      +..++.|...+.++..  ......+++|++.|+.|++|++..... .....|.   +...|.++.|+-.. |+.||..  
T Consensus       366 vwt~~AHd~~ISgl~~--n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k--  440 (463)
T KOG0270|consen  366 VWTLKAHDDEISGLSV--NIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK--  440 (463)
T ss_pred             eeEEEeccCCcceEEe--cCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCcc--
Confidence            8889999888776654  334567899999999999999864322 1112222   23456667777654 5555533  


Q ss_pred             eeEEEEee
Q 021459          303 RTVRVWVQ  310 (312)
Q Consensus       303 ~~v~iw~~  310 (312)
                      ..+++|+.
T Consensus       441 ~~~~vwd~  448 (463)
T KOG0270|consen  441 AVLRVWDI  448 (463)
T ss_pred             ceEEEeec
Confidence            47999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.6e-22  Score=155.85  Aligned_cols=271  Identities=20%  Similarity=0.351  Sum_probs=196.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------------ceEEEee-eccCCEEEEEEc-------cCCCeEEEEc
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSL------------ALVHRFV-GHSEGISDLAWS-------SDSHYICSAS   83 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~   83 (312)
                      -...++|||||..|++-+.|..+++|++..-            ++...++ .....|.+-+|=       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3456899999999999999999999986421            0111111 123567777773       6778999999


Q ss_pred             CCCeEEEEeCCCCceeeeeee--cccc---cEEEEEEecCCCEEEEeecCCcEEEEEc-CCCeEEEEe--eec-----Cc
Q 021459           84 DDRTLRIWDARTPFDCLKTLR--GHSD---FVFCVNFNPQSNLIVSGSFDESIRIWEV-KTGKCTRVI--RAH-----SM  150 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~l~s~~~dg~i~~wd~-~~~~~~~~~--~~~-----~~  150 (312)
                      .+.-|++||..++. ....+.  .|.+   ...+++|+|||..|++| .+..|+++|+ +.|+.....  ..+     .+
T Consensus       131 r~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999987753 222222  2322   34689999999998875 6789999999 555432221  112     45


Q ss_pred             CeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCc-EE
Q 021459          151 PVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGK-FL  227 (312)
Q Consensus       151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-~~  227 (312)
                      -+.+++|+|- ...++.|+....+-|+.-.....+..+ ..+...++.++|.++|+.|.+|.. +-.|..||++.-. .+
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            5789999994 458899998888888776555555444 456677899999999999999864 6789999998644 33


Q ss_pred             EEEEccCCce-eEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeecccCCccceEEEEEcCCCceEEEee
Q 021459          228 KIYTGHTNKK-YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      ..+..|.... ..|.. -..+.+++|++|+.||.|++||+.. +..+..+..|..-|+.++++|--+.+++++
T Consensus       288 ~~L~rhv~~TNQRI~F-Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  288 YALERHVGDTNQRILF-DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             hhhhhhccCccceEEE-ecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            3444454422 22322 2236799999999999999999987 555667778899999999999988888887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=3.4e-23  Score=167.84  Aligned_cols=261  Identities=19%  Similarity=0.266  Sum_probs=201.6

Q ss_pred             ceEEEEECCCCCE-EEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           24 AVSCVKFSNDGTL-LASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        24 ~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      .+..+.|+....+ +++.+.|+.+++|.-...    ..+.+..+.  .-.|++......++++|+..+.|+|||++. ..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KL  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HH
Confidence            4888999876643 344567889999964322    122222222  233555555568999999999999999984 46


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCE-EEEeeCCCeEEEE
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSL-IVSGSHDGTCKIW  176 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~i~iw  176 (312)
                      +.+.+++|.+.|.++.|+....++++++..|.|.+..+.++.....+... ...|+-+.|+|..+. |.+++.+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            67888999999999999999999999999999999999998877666544 344678999997764 5578899999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      |+.....+......+..+...++|+|... +|++.+.|..|.+||.+..+....+.....    +....+.++|.+|+.|
T Consensus       193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSECGTYLCAG  268 (673)
T ss_pred             eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCCceEEEee
Confidence            99877777666666777777888999655 666779999999999987776655543222    3334556889999999


Q ss_pred             ecCCeEEEEECCc-hheeecccCCccceEEEEEcCCC
Q 021459          256 SEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       256 ~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~  291 (312)
                      +..|.|..||++. ..++..+..|...|.+|+|.|..
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999975 46678889999999999998875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=155.99  Aligned_cols=237  Identities=14%  Similarity=0.267  Sum_probs=171.3

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  146 (312)
                      ..++.|++.|.+||+|+.||.|.+||+.+- ..-+.+.+|..+|.+++|+++|++|++++.|..|.+||+..|.+.+.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            678999999999999999999999999873 4566788999999999999999999999999999999999999887775


Q ss_pred             ecCcCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEccc-CC----CCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459          147 AHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLID-DK----DPAVSFAKFSPNGKFILVGTLDSTLKLWN  220 (312)
Q Consensus       147 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~d~~i~v~d  220 (312)
                       ...+|+.+.|+|... .+++.-.+..-.+.++..+.  ...+. ..    ........|++.|+++++|+..|.+.++|
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence             467999999999443 33333333334444444321  11111 11    11222335899999999999999999999


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---------heeecccC--CccceEEEEEcC
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---------TMIQKLDG--HTDSVISVTCHP  289 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~--h~~~v~~l~~~p  289 (312)
                      ..+.+++..+....  ...+.....+..+++|+.-+.|..|+.|+++..         +..++++.  ....=.++.|+.
T Consensus       182 a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  182 AETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             cchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            99988877665433  122333334467999999999999999998621         11122211  111224566888


Q ss_pred             CCceEEEeeecCCeeEEEEee
Q 021459          290 TENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       290 ~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +|.++++++. ....++||.-
T Consensus       260 dgeYv~a~s~-~aHaLYIWE~  279 (405)
T KOG1273|consen  260 DGEYVCAGSA-RAHALYIWEK  279 (405)
T ss_pred             CccEEEeccc-cceeEEEEec
Confidence            9999888874 4578999964

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.5e-23  Score=163.97  Aligned_cols=243  Identities=17%  Similarity=0.254  Sum_probs=194.2

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKC  141 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~  141 (312)
                      .++|+++.|+|....|++++.|+.+++|.+... ...++.+.-...+|.++.|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999987542 123445544567899999999998 899999999999999988765


Q ss_pred             EEEe--eec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459          142 TRVI--RAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL  218 (312)
Q Consensus       142 ~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  218 (312)
                      .+.-  .++ ...+.....++++++++..+..|.|.+....+++.+..+.  ....+....|+.+++.|++.+.+|.|.+
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            4432  222 2346678889999999999999999999988888777663  3456788889999999999999999999


Q ss_pred             EEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc------hheeecccCCccceEEEEEcCCCc
Q 021459          219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ------KTMIQKLDGHTDSVISVTCHPTEN  292 (312)
Q Consensus       219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~~p~~~  292 (312)
                      ||++...++..+..... ..... .....++.+||+|+..|.|.|||.++      .+++..+..-...|..++|+|+.+
T Consensus       371 ~nl~~~~~~~rf~D~G~-v~gts-~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGS-VHGTS-LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             EecCCcceEEEEeecCc-cceee-eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            99999988887764322 22222 23346789999999999999999643      345566666677899999999999


Q ss_pred             eEEEeeecCCeeEEEEee
Q 021459          293 KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~  310 (312)
                      .||.+|.-.+..+|+=++
T Consensus       449 iLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHV  466 (514)
T ss_pred             hhhhhhhccccceEEEec
Confidence            999999888888888554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.4e-23  Score=165.48  Aligned_cols=233  Identities=19%  Similarity=0.402  Sum_probs=170.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceE---------------------EEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALV---------------------HRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW   91 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w   91 (312)
                      |+++|.|..|-.|.|||+.-...+                     ....+|+..|..++|+.. .+.||+|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            679999999999999987521100                     012368889999999876 5689999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEEEEEccCC-CEEEEee
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTSVHFNRDG-SLIVSGS  168 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~  168 (312)
                      |+.++ ++..++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.|.. ..+++++
T Consensus       272 D~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  272 DVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEec
Confidence            99986 567778889999999999985 468999999999999999842221 2222 24568889999854 5678889


Q ss_pred             CCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccC---CceeEEEEE
Q 021459          169 HDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHT---NKKYCITST  243 (312)
Q Consensus       169 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~  243 (312)
                      .||+++-+|+|+. +.+.++. .++..++.+++++.- .++++++.|+.|++|++......... .|.   ....|.  .
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~--~  425 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCF--A  425 (463)
T ss_pred             CCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-cccccccceeec--c
Confidence            9999999999986 5555554 455667777776643 47888999999999998654331111 111   111121  1


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      ..+...-+++.|+..+.+++||+.+...+
T Consensus       426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCcceEEEecCccceEEEeecccChhH
Confidence            22233457899999999999999776544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-22  Score=154.32  Aligned_cols=242  Identities=21%  Similarity=0.412  Sum_probs=169.7

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc----eeee-eeecccccEEEEEEecCCCE-EEEeecCCcE
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF----DCLK-TLRGHSDFVFCVNFNPQSNL-IVSGSFDESI  131 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~----~~~~-~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i  131 (312)
                      ..+++|...|++++|+.||++|++++.|+.|++|+++.-.    ++++ .++  -+.-..+.|+||.+- +++.-...++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence            3567999999999999999999999999999999986521    1111 111  123456889999875 4455566679


Q ss_pred             EEEEcCCC---eEE---------EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459          132 RIWEVKTG---KCT---------RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK  199 (312)
Q Consensus       132 ~~wd~~~~---~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (312)
                      ++|-+...   ...         ..-+.|+.++..+-...++.++++++.|..|.+|+++ |+.+..+.... .....++
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-cccccee
Confidence            99976432   111         1113456677778888889999999999999999998 77777664333 3345677


Q ss_pred             ECCCCCEEEEEecCCeEEEEEcC---CCc-----EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch--
Q 021459          200 FSPNGKFILVGTLDSTLKLWNYS---AGK-----FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK--  269 (312)
Q Consensus       200 ~~~~~~~l~~~~~d~~i~v~d~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--  269 (312)
                      .+|+|+++++++.--.|++|..-   .|+     .+..+.+|...   +....+.++.+.+++.+.||.+++||+.-.  
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            99999999999998999999863   232     22345677665   333444578899999999999999998422  


Q ss_pred             --h---eeecc----cCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          270 --T---MIQKL----DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       270 --~---~~~~~----~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                        +   .++..    ..-.+.-..|+++|.++.|+.+.  | .+++++.
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--g-s~l~~~~  358 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--G-SDLKVFA  358 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--C-CceEEEE
Confidence              1   11111    12233455999999999998765  2 3566554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=2.9e-20  Score=159.90  Aligned_cols=289  Identities=35%  Similarity=0.670  Sum_probs=221.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-eEEEeeeccC-CEEEEEE-ccCCC-eEEEEcC-CCeEEEE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-LVHRFVGHSE-GISDLAW-SSDSH-YICSASD-DRTLRIW   91 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~~~~-d~~v~~w   91 (312)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.++.. .+..+.+ .+++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456899999999999999999999999999999998876 6666666443 6777777 77777 5555444 8999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEeeC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSH  169 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  169 (312)
                      +..........+..|...+..++|+|++..+++++. ++.+++|++..+.....+..|...+.+++|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            987633556677889999999999999998888885 99999999998888888888999999999999998 5555599


Q ss_pred             CCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEcc
Q 021459          170 DGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      |+.+++||...+.... .+..+. ... ...|+|++..+++++.|+.+++|+...... +..+..|.....++   ...+
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~  294 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AFSP  294 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE---EECC
Confidence            9999999988766666 343332 222 337999998899999999999999987664 44444454433333   3345


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeeccc--CCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLD--GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++..+++++.|+.+.+||...........  .|...+..+.+.+++..++.++. .+..+++|+..
T Consensus       295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~  359 (466)
T COG2319         295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLR  359 (466)
T ss_pred             CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec-CCCcEEeeecC
Confidence            67778779999999999998776665554  78778999999333245655532 23678888764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.8e-24  Score=170.46  Aligned_cols=296  Identities=23%  Similarity=0.378  Sum_probs=232.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccC--CCeEEEEcCCCeEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSD--SHYICSASDDRTLR   89 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~   89 (312)
                      .....|..|.+-|+.|.|...|..|++|+.|..|.+||...++....+ .+|...|..-.|.|.  ..-+++++.||.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            344567889999999999999999999999999999999988776555 579999988889884  45789999999999


Q ss_pred             EEeCCCCc--eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEee---ecCc---CeEEEEEccC
Q 021459           90 IWDARTPF--DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIR---AHSM---PVTSVHFNRD  160 (312)
Q Consensus        90 ~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~~~~  160 (312)
                      +=.+....  +..+.+..|.+.|..++..|+. +.|++++.|+.+.-.|++.+.....+.   .+..   ....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            87654322  2244566788999999998865 569999999999999998775443332   2222   4678888885


Q ss_pred             CC-EEEEeeCCCeEEEEeCCCCce------eeEc-----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC--C--
Q 021459          161 GS-LIVSGSHDGTCKIWDAGEGAC------LKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA--G--  224 (312)
Q Consensus       161 ~~-~l~~~~~d~~i~iwd~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~--  224 (312)
                      .. .+++++.|...++||.+.-..      +..+     .......|+.++++.++.-|+++..|-.|++|....  +  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            54 899999999999999875321      1222     223345688899998888888888899999995432  2  


Q ss_pred             --------cEEE-EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          225 --------KFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       225 --------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                              ..++ .+++|......-.+.|+.|..+++++|++-|.|.||+-.+.+.+..+++-..-|+||.-||.-..||
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence                    1223 3788877655555667888899999999999999999999999999988777999999999999999


Q ss_pred             EeeecCCeeEEEEee
Q 021459          296 SAGLDGDRTVRVWVQ  310 (312)
Q Consensus       296 ~~~~dgd~~v~iw~~  310 (312)
                      +.|.|.  -|+||-+
T Consensus       453 sSGid~--DVKIWTP  465 (559)
T KOG1334|consen  453 SSGIDH--DVKIWTP  465 (559)
T ss_pred             ccCCcc--ceeeecC
Confidence            999886  5999965

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.9e-22  Score=152.56  Aligned_cols=241  Identities=24%  Similarity=0.414  Sum_probs=185.5

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCC
Q 021459           19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+|+-.|+.+.|-| |..++.+++-|.+++|||.++.+....+. -.+.|++-+++|-   ..++|+|..+-.|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            46889999999998 77789999999999999999987765554 4577888899883   3477888888899999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCC-eEEEE--------------eeecCcCeEEEEEc
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTG-KCTRV--------------IRAHSMPVTSVHFN  158 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~~  158 (312)
                      .+ .....+.||.+.|.++.|+|..++ |++|+.||.|++||++.- .+...              -.+|.+.+..++|+
T Consensus       177 SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  177 SG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             CC-cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            86 567788999999999999998875 789999999999999743 22222              23566789999999


Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCceeeEccc----CC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          159 RDGSLIVSGSHDGTCKIWDAGEGACLKTLID----DK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      .++.++++++.|..+++|+..+|+.......    ..  ...+. +. +.+...++.--.++.+.++.+-.+..++.+..
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~  333 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST  333 (397)
T ss_pred             ccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence            9999999999999999999987764322111    11  11122 22 33334444444568999999999999999988


Q ss_pred             cCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      |...   +.+.+..++-+.+.+|..|+.|..|-.
T Consensus       334 h~k~---i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  334 HLKR---INCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccce---eeEEeecCchhhhhccccCCccccccc
Confidence            8554   444555566677899999999999965

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.8e-24  Score=188.75  Aligned_cols=277  Identities=23%  Similarity=0.411  Sum_probs=206.0

Q ss_pred             EEEECCCCC-EEEEE----------eCCCeEEEEeCCC--cc----eEEEeeeccCCEEEEEEccCCCe----EEEEcCC
Q 021459           27 CVKFSNDGT-LLASA----------SLDKTVIIWSASS--LA----LVHRFVGHSEGISDLAWSSDSHY----ICSASDD   85 (312)
Q Consensus        27 ~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d   85 (312)
                      .++|+|++. ++++|          +.+.++.+|.+..  ..    ....+. -....+.++|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            368999886 45543          3345566664432  21    222221 2456789999987664    8889999


Q ss_pred             CeEEEEeCCC-----CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEE
Q 021459           86 RTLRIWDART-----PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHF  157 (312)
Q Consensus        86 ~~v~~wd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~  157 (312)
                      |.|.+||...     ....+.+...|.+.|..+.|++.. ++|++|+.||.|.|||+++-+......  .....|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999754     123456677899999999999965 599999999999999998755444331  23456999999


Q ss_pred             ccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCC-EEEEEecCC---eEEEEEcCCCc-EEEEE
Q 021459          158 NRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGK-FILVGTLDS---TLKLWNYSAGK-FLKIY  230 (312)
Q Consensus       158 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~d~---~i~v~d~~~~~-~~~~~  230 (312)
                      +.. ...|++++.+|.+.|||++..+.+..+..... ..++.+.|+|+.. .+++++.|.   .|.+||+|... .++++
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            874 34678899999999999998866554433222 3467889999874 566666553   68999998654 56778


Q ss_pred             EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEE
Q 021459          231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVW  308 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw  308 (312)
                      ++|......  ..+...+.++|++++.|+.|.+|+.++++.+..+.....++..+.|.|... .++.++.||.  |-|+
T Consensus       250 ~~H~~Gils--lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk--I~I~  324 (1049)
T KOG0307|consen  250 EGHQRGILS--LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK--ISIY  324 (1049)
T ss_pred             cccccceee--eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc--eeee
Confidence            888876544  355667779999999999999999999999999998889999999999876 8888898874  4444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=4.7e-23  Score=167.04  Aligned_cols=262  Identities=20%  Similarity=0.352  Sum_probs=200.9

Q ss_pred             CCCeEEEEeCCCcceEEEeeecc--CCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCc---eeeeeeecccccEEEEEE
Q 021459           42 LDKTVIIWSASSLALVHRFVGHS--EGISDLAWSSDSH-YICSASDDRTLRIWDARTPF---DCLKTLRGHSDFVFCVNF  115 (312)
Q Consensus        42 ~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~---~~~~~~~~~~~~v~~~~~  115 (312)
                      ....+++||+........+..|+  .++.+++|+.... .+++.+.|..+++|.-..+.   ..+....+  +.-.|++.
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~   87 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVAC   87 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhh
Confidence            33479999998776655555443  3588999987664 33344568889999654321   11222222  24456666


Q ss_pred             ecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459          116 NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       116 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      .....++++|+..+.|++||++...+.+.++.|+..|+++.+.....++++++..|.|.+..+.++.....+....+..+
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv  167 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV  167 (673)
T ss_pred             hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence            66668999999999999999998888888999999999999999999999999999999999998887777766656778


Q ss_pred             EEEEECCCCCEEE-EEecCCeEEEEEcCCCcEEEEE-EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459          196 SFAKFSPNGKFIL-VGTLDSTLKLWNYSAGKFLKIY-TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ  273 (312)
Q Consensus       196 ~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (312)
                      ..+.++|..+.++ +++.+|.|.+||......+..+ ..|..+  +-.++|++.+..+|++.+.|..|.+||........
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEecccceEEEeecccccccc
Confidence            8899999887554 5688999999999876655433 334433  34457788889999999999999999998877666


Q ss_pred             cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          274 KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       274 ~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+. ...+...|+|.++|-+|++|+..|  .|..||+
T Consensus       246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G--~~i~YD~  279 (673)
T KOG4378|consen  246 RLT-YSHPLSTVAFSECGTYLCAGNSKG--ELIAYDM  279 (673)
T ss_pred             eee-ecCCcceeeecCCceEEEeecCCc--eEEEEec
Confidence            654 466889999999999999998554  6777765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=1.2e-21  Score=151.15  Aligned_cols=287  Identities=24%  Similarity=0.410  Sum_probs=200.2

Q ss_pred             ecccccceEEEEECC-----CCCEEEEEeCCCeEEEEeCCCcc---eEEEee--eccCCEEEEEEccC----CCeEEEEc
Q 021459           18 LTAHSRAVSCVKFSN-----DGTLLASASLDKTVIIWSASSLA---LVHRFV--GHSEGISDLAWSSD----SHYICSAS   83 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~-----~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~   83 (312)
                      .+.|+.+|..++|.+     +-..+||+|.+ .+.+|+.....   .+..+.  .|.+....++|+-+    ..+|+.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            457999999999984     22356777664 68888765432   233322  36677788888754    34889999


Q ss_pred             CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEe---eecCcCeEEEEEcc
Q 021459           84 DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVI---RAHSMPVTSVHFNR  159 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~  159 (312)
                      .-|.|++.|+... ++.+.+.+|...|..+.+.|+. +++++++.|.+|++|++++..++..+   .+|...|.++.|++
T Consensus       113 ~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            9999999999774 6778889999999999999964 68999999999999999999999877   56899999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEccc------C-----------CCCcEEEEEECC--------CCCEEEEEecCC
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLID------D-----------KDPAVSFAKFSP--------NGKFILVGTLDS  214 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~-----------~~~~~~~~~~~~--------~~~~l~~~~~d~  214 (312)
                      +|.++++++.|..+++|++...+....+..      .           +-+..+....+.        -|+++++-+-++
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscen  271 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCEN  271 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCc
Confidence            999999999999999999874332111100      0           001110111111        157788888889


Q ss_pred             eEEEEEc-CCCcEEE-------------EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee--ecccC-
Q 021459          215 TLKLWNY-SAGKFLK-------------IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI--QKLDG-  277 (312)
Q Consensus       215 ~i~v~d~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-  277 (312)
                      .|..|-. +-++.+.             .+.-..-..+.+...+. +-++.||.|...|.|.+||+...+..  .++.. 
T Consensus       272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d-~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s  350 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD-PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS  350 (385)
T ss_pred             eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec-HHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence            9999976 2111111             11111112223333332 34678999999999999999876553  22221 


Q ss_pred             -CccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          278 -HTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       278 -h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                       -...|...+|+.++..|+....|+  +|.=|+
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~--~Vwrwd  381 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDG--TVWRWD  381 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCC--cEEEEE
Confidence             235688999999999999998664  544443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=156.56  Aligned_cols=239  Identities=24%  Similarity=0.410  Sum_probs=180.9

Q ss_pred             eeccCCEEEEEEccCC--CeEEEEcCCCeEEEEeCCCC---------------ceeeeeeecccccEEEEEEecCC-CEE
Q 021459           61 VGHSEGISDLAWSSDS--HYICSASDDRTLRIWDARTP---------------FDCLKTLRGHSDFVFCVNFNPQS-NLI  122 (312)
Q Consensus        61 ~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~-~~l  122 (312)
                      ..|.+.++.+.-++-+  .+.++-+..|.|+||++...               .+.+.++.+|.+.-+.++|+|-. ..|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577777777777654  46667788999999998531               23456677888888999999933 358


Q ss_pred             EEeecCCcEEEEEcCCCeEE---EEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEE
Q 021459          123 VSGSFDESIRIWEVKTGKCT---RVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSF  197 (312)
Q Consensus       123 ~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~  197 (312)
                      ++|..-+.|++|...++.-.   ..+.+|...|-.+.|+|.. ..|++|+.||.|+|||+|.+.... .+...+...+..
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            88888899999998876532   3455699999999999954 588999999999999999873221 222456678889


Q ss_pred             EEECCCCCEEEEEecCCeEEEEEcCC---CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---
Q 021459          198 AKFSPNGKFILVGTLDSTLKLWNYSA---GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM---  271 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---  271 (312)
                      +.|+.+..+||+|+.||+++|||++.   +..+..+..|..++.++  .+.+.+...|++++.|..|.+||+.-..-   
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi--eW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI--EWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE--EeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            99999988999999999999999975   45677888888876666  35555667889999999999999842111   


Q ss_pred             -------------eecccCC--ccceEEEEEcCCC-ceEEEeeecC
Q 021459          272 -------------IQKLDGH--TDSVISVTCHPTE-NKIASAGLDG  301 (312)
Q Consensus       272 -------------~~~~~~h--~~~v~~l~~~p~~-~~l~~~~~dg  301 (312)
                                   .+.+--|  +..+..|.||+.. .++++.+.||
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence                         1122235  4578999999974 5788888887

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=8.5e-23  Score=160.15  Aligned_cols=171  Identities=26%  Similarity=0.492  Sum_probs=143.2

Q ss_pred             CceeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceE---EEeeeccCCEEEEEEccC-CCeEEEEcC
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALV---HRFVGHSEGISDLAWSSD-SHYICSASD   84 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~   84 (312)
                      +..+++.++.+|...=++|.||| ....|+||..-+.|++|...++.-.   ..+.+|+..|..|+|+|. ...+++|+-
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            34566778999999999999999 3345889888899999988875432   345679999999999996 468999999


Q ss_pred             CCeEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC---CeEEEEeeecCcCeEEEEEccC
Q 021459           85 DRTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT---GKCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus        85 d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~~~~  160 (312)
                      ||+|+|||++.+.+ .....+.|.+.|..++|+....+|++|+.||++++||+++   ++.+..++.|..+|+++.|+|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            99999999987532 2333478999999999999888999999999999999975   5567789999999999999995


Q ss_pred             -CCEEEEeeCCCeEEEEeCCC
Q 021459          161 -GSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       161 -~~~l~~~~~d~~i~iwd~~~  180 (312)
                       ...|++++.|.+|.+||+.-
T Consensus       359 e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCceEEeccCCCcEEEEEeec
Confidence             45788899999999999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.1e-22  Score=153.53  Aligned_cols=271  Identities=22%  Similarity=0.364  Sum_probs=193.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEEEeCCCCceee-eeeeccc-ccE
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRIWDARTPFDCL-KTLRGHS-DFV  110 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~~~~~~~~-~~~~~~~-~~v  110 (312)
                      ..+|++-.+|.|++||..+++.+..+++++..++.++|..  ....+.+|+.||.|++||++...+.. ....++. .+-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999987  46789999999999999998754332 2334444 345


Q ss_pred             EEEEEecCCCEEEEeec----CCcEEEEEcCCCeE-EEEe-eecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCce
Q 021459          111 FCVNFNPQSNLIVSGSF----DESIRIWEVKTGKC-TRVI-RAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      .|++.+...+.+++|..    +-.|.+||.+..+. +..+ ..|...|+++.|+| +.++|++|+.||.+.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            66666656677777754    45699999997765 4443 57999999999999 567999999999999999875421


Q ss_pred             ---eeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccC----------CceeEEEEEEEccCC
Q 021459          184 ---LKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHT----------NKKYCITSTFSVTNG  249 (312)
Q Consensus       184 ---~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  249 (312)
                         +.... .....+..+.|..++ +.+.+-+...+..+|++..+.....+....          ...+.+.. ..+.+.
T Consensus       201 eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~  278 (376)
T KOG1188|consen  201 EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK  278 (376)
T ss_pred             hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc
Confidence               11112 234557777787666 468888899999999998876433222110          11122322 223444


Q ss_pred             cEEEEeec-CCeEEEEECCc------hheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          250 KYIVSGSE-DNCVYVWDLQQ------KTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       250 ~~l~~~~~-dg~i~iwd~~~------~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .+++.++. -|...++-+..      .+.+..+++ |..-|+++.|...+..+.|||.|  +.|.+|.
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED--G~l~~Wk  344 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED--GLLQAWK  344 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC--ceEEEEe
Confidence            55555444 56666664432      233445565 67788888888888999999966  5899998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=3.8e-19  Score=152.95  Aligned_cols=290  Identities=40%  Similarity=0.714  Sum_probs=218.4

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~   90 (312)
                      .....+..|...|..++|+|++..+++++. |+.+++|+......+..+.+|...|.+++|+|++. .+++++.|+.+++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            445667889999999999999998888885 99999999998888888888999999999999998 5555589999999


Q ss_pred             EeCCCCceeee-eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           91 WDARTPFDCLK-TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        91 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ||.... .... .+.+|.... ...|+|++..+++++.++.+++|++..... ...+..|...+.++.|.|++..+++++
T Consensus       226 wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         226 WDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence            988743 3444 577777765 448999998899999999999999987664 444456788999999999888888899


Q ss_pred             CCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .|+.+.+||........... ..+...+..+.+.+++..++.+ ..|+.+.+|+...............   .....+..
T Consensus       304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  380 (466)
T COG2319         304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---VLSVSFSP  380 (466)
T ss_pred             CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce---EEEEEECC
Confidence            99889999988776555443 1233346666664343566666 6788999999877762222222211   22223333


Q ss_pred             cCCcEEEE-eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          247 TNGKYIVS-GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       247 ~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                       + ..+.. +..++.+.+|+............+...+....+.+++..+++++  .+.++++|+..
T Consensus       381 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  442 (466)
T COG2319         381 -D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS--SDNTIRLWDLK  442 (466)
T ss_pred             -C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec--CCCcEEEEecc
Confidence             3 34444 78999999999988777666554436788889999998888866  34689999763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.9e-23  Score=181.81  Aligned_cols=245  Identities=16%  Similarity=0.351  Sum_probs=189.7

Q ss_pred             cceEEEEECCCCCE----EEEEeCCCeEEEEeCCCc------ceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEE
Q 021459           23 RAVSCVKFSNDGTL----LASASLDKTVIIWSASSL------ALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW   91 (312)
Q Consensus        23 ~~v~~~~~s~~~~~----l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w   91 (312)
                      ..-+.|+|.+.+..    ||.|..||.|.+|+....      ..+.....|++.|..+.|++. ++.||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45678999987665    899999999999997652      345566789999999999996 5599999999999999


Q ss_pred             eCCCCceeeee-eecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCc--CeEEEEEccCCC-EEEE
Q 021459           92 DARTPFDCLKT-LRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM--PVTSVHFNRDGS-LIVS  166 (312)
Q Consensus        92 d~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~  166 (312)
                      |+.+....... -..-.+.|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..+..  .+..++|+|+.. .+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99874322211 1123567999999875 45788999999999999998876665554443  477899999764 5666


Q ss_pred             eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      ++.|.   .|.+||+|...........|...+..+.|++.+ .+|++++.|++|.+|+..+++.+..+..  ...++..+
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv  302 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDV  302 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeee
Confidence            66554   589999987654444444555566677788766 8999999999999999999998877654  34567777


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCch
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .|.+.+...++.++-||.|.||.+...
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeeeecC
Confidence            888888889999999999999998643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=6.1e-22  Score=152.82  Aligned_cols=243  Identities=22%  Similarity=0.439  Sum_probs=178.8

Q ss_pred             ccccceEEEEECCC----CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCC
Q 021459           20 AHSRAVSCVKFSND----GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDAR   94 (312)
Q Consensus        20 ~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~   94 (312)
                      .|...-..++|+-+    ..++|.||.-|.|+|.|+.+++....+.+|...|+.+.+.|+. ++++++|.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            37777888888754    3478999999999999999999999999999999999999975 799999999999999999


Q ss_pred             CCceeeee---eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE----------------------------
Q 021459           95 TPFDCLKT---LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR----------------------------  143 (312)
Q Consensus        95 ~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------------------------  143 (312)
                      +. .++..   +.+|.+.|.++.|++++.++++++.|.++++|++...+...                            
T Consensus       167 ~~-~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TD-VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CC-eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            85 45443   46799999999999999999999999999999997432110                            


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-CceeeEc---------ccC---CCCcEEE--EEECCCCCEEE
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-GACLKTL---------IDD---KDPAVSF--AKFSPNGKFIL  208 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~---------~~~---~~~~~~~--~~~~~~~~~l~  208 (312)
                      +-..|...|.|+.|-  |+++++=+-++.|..|...+ ++.+...         ...   ....+..  .+++|-++.||
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence            011234444455553  56889988999999998732 1111111         111   1112222  35778889999


Q ss_pred             EEecCCeEEEEEcCCCcEEE--EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          209 VGTLDSTLKLWNYSAGKFLK--IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .|...|.|.+||+++.+...  ++. |......+.-.....++.+|+...+|+.|--||.
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLT-HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEE-eccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            99999999999998876532  222 2222222333334467899999999999999985

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=157.40  Aligned_cols=252  Identities=19%  Similarity=0.287  Sum_probs=184.3

Q ss_pred             ceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           14 HFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      .+..+..|..+|+++.|+| +-..+++.+.||+|++-|+++..  .+..+......+.++.|+.+...++++..=|...+
T Consensus       226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~  305 (498)
T KOG4328|consen  226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV  305 (498)
T ss_pred             ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence            3456778999999999999 45689999999999999988753  33333323445678889888888888888789999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEE----EEeeecCcCeEEEEEccCCCEEE
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCT----RVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      ||.+++......+.-|...|..++++|.. .+++|++.|++.++||++.-...    .....|...|.+..|+|.+-.|+
T Consensus       306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  306 IDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL  385 (498)
T ss_pred             EEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence            99998766566667788899999999965 47899999999999999754322    23346888999999999887899


Q ss_pred             EeeCCCeEEEEeCC----CCceeeEcccCC--CCc--EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-c
Q 021459          166 SGSHDGTCKIWDAG----EGACLKTLIDDK--DPA--VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-K  236 (312)
Q Consensus       166 ~~~~d~~i~iwd~~----~~~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~  236 (312)
                      +.+.|..|++||..    .-....++....  ...  ..-+.|.|+..++++|..-..|-|||-..++.+..+..... .
T Consensus       386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t  465 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST  465 (498)
T ss_pred             eeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc
Confidence            99999999999973    112222222111  111  12256999999999999999999999888876655433322 2


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      +.++ ..+.+.+..+++.++..|.|++|--
T Consensus       466 I~~v-n~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  466 IPSV-NEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cccc-eeecccccceeccCCccceEEEEec
Confidence            2222 2333333336677778899998854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5.5e-22  Score=163.05  Aligned_cols=249  Identities=21%  Similarity=0.338  Sum_probs=181.4

Q ss_pred             EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459           59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI  131 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  131 (312)
                      .+..|.+.|+.++|.|....|++++.|+.+++|+++.       ..+.+.++++|.++|.|+++.++++.+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            4567888999999999999999999999999999832       234567889999999999999999999999999999


Q ss_pred             EEEEcCCC----------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc--cCCCCcEEEEE
Q 021459          132 RIWEVKTG----------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI--DDKDPAVSFAK  199 (312)
Q Consensus       132 ~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~  199 (312)
                      +.|++...          .....+.+|...++.+++++....|++++.||+++.|+...... ..+.  ........ +.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls-vd  446 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS-VD  446 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce-Ee
Confidence            99966422          12346778999999999999999999999999999999876554 1111  11122222 21


Q ss_pred             ECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCc----eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeec
Q 021459          200 FSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK----KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK  274 (312)
Q Consensus       200 ~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (312)
                      +-... ...++...-+.--+++......+.++......    ...+....+.++..+.+++.+|+.|+++|..++.++..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            21111 11222222222223333333333333322111    11233344557778999999999999999999999999


Q ss_pred             ccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          275 LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       275 ~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ...|-..+.++++.|++.+|++++.|  ++|++|..+
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d--~sv~l~kld  561 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHD--GSVRLWKLD  561 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCC--ceeehhhcc
Confidence            99999999999999999999999955  689999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=8e-22  Score=162.12  Aligned_cols=258  Identities=22%  Similarity=0.346  Sum_probs=189.2

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--------cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--------LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v   88 (312)
                      ++..|.+.|+.+.|.|....|++++.||.+.+|+++.        .+++..+.+|.++|.|+++.++++.+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            7889999999999999999999999999999999832        35678899999999999999999999999999999


Q ss_pred             EEEeCCC---------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---ecCcCeEEEE
Q 021459           89 RIWDART---------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---AHSMPVTSVH  156 (312)
Q Consensus        89 ~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~  156 (312)
                      +.|++..         +......+.||.+.++.+++++....|++++.||+++.|+...... ..+.   .|.. -..+.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~-Plsvd  446 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY-PLSVD  446 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC-cceEe
Confidence            9996531         1123456779999999999999988999999999999999876654 2222   2222 23444


Q ss_pred             EccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          157 FNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       157 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      +-... ...++...-+.-.+.+....+....+...      ....+..+.+.|.+...+++..|+.|+++|..+++.+..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            43222 12222222222223333333222221110      113455667889999999999999999999999998877


Q ss_pred             EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc
Q 021459          230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT  279 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  279 (312)
                      ...|.....++   ...+++.+|++|+.||.+++|.+.....+.....|.
T Consensus       527 ~~a~~~svtsl---ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  527 MVAHKDSVTSL---AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eeeccceecce---eecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            76666554333   445889999999999999999997777666655543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=149.38  Aligned_cols=292  Identities=16%  Similarity=0.285  Sum_probs=207.7

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------ceEEEe-eeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------ALVHRF-VGHSEGISDLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v   88 (312)
                      +.+.+|.+-|+++.||.++++|++|+.|..+++|+....      +++... ..|...|.+++|....++|++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            356789999999999999999999999999999987532      333222 2356889999999999999999999999


Q ss_pred             EEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEE--EeeecCcCeEEEEEccCC-
Q 021459           89 RIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTR--VIRAHSMPVTSVHFNRDG-  161 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~--~~~~~~~~v~~~~~~~~~-  161 (312)
                      .+-|+++. +.+.. ..|.   +.|..+..+|-.+.+++.+.++.|.+||.+..+ ...  ...........+.|+|.. 
T Consensus       130 I~HDiEt~-qsi~V-~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETK-QSIYV-ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             Eeeecccc-eeeee-ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            99999875 33322 2333   489999999999999999999999999997654 211  111233456788899954 


Q ss_pred             CEEEEeeCCCeEEEEeCCCCcee-eEc---ccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459          162 SLIVSGSHDGTCKIWDAGEGACL-KTL---IDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN  235 (312)
Q Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  235 (312)
                      .++++.+..+-+.+||.+..+.. .+.   ..-.  ........|+|+|.+|++--.-..-.+||+.+.++.-....|..
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence            57788888899999998764321 110   0000  11112356999999988766555566788877665333333333


Q ss_pred             ceeE----EEEEEEccCCcEEEEeecCCeEEEEECCch-----------------------heeecccCCccceEEEEEc
Q 021459          236 KKYC----ITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-----------------------TMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       236 ~~~~----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~~  288 (312)
                      ..+|    +..+.+ -+...+++|+.+=-|++|.+...                       ..+..++||..-++.|.|+
T Consensus       288 ~GY~N~~T~KS~~F-~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~  366 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTF-IDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS  366 (609)
T ss_pred             Ccceeeeeeeeeee-ecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence            2232    222222 23456999999999999987321                       0123467999999999999


Q ss_pred             CCCceEEEeeecCCeeEEEEeecC
Q 021459          289 PTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       289 p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      |....|++.|..  ..++||...|
T Consensus       367 ~H~~~l~SSGVE--~~~KlWS~~r  388 (609)
T KOG4227|consen  367 QHNNLLVSSGVE--NSFKLWSDHR  388 (609)
T ss_pred             CCcceEeccchh--hheecccccc
Confidence            999999888854  6899997643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=2.7e-21  Score=152.64  Aligned_cols=209  Identities=22%  Similarity=0.421  Sum_probs=161.6

Q ss_pred             EeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC------ceeeeeeecccccEEEEEEecC-CCEEEEeecCCc
Q 021459           59 RFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDES  130 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~  130 (312)
                      ...+|+.+|..++|+| +.+.||+||.|.+|.+|++...      .+.+..+.+|...|--+.|+|- .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3468999999999999 4678999999999999987532      2456788999999999999995 478999999999


Q ss_pred             EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459          131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG  210 (312)
Q Consensus       131 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
                      |.+|++.+++.+..+. |..-|+++.|+.||.++++.+.|..|++||.++++.+..-..+.+....-+.|-.+|..+.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999887777 999999999999999999999999999999999998877654444444445577788855555


Q ss_pred             ---ecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEE-EEeecCCeEEEEECCchh
Q 021459          211 ---TLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYI-VSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       211 ---~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  270 (312)
                         ..+.++-+||..+-+. +....-.  ....+..-|..++..++ ++|-.|+.|+-|.+.+..
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence               2467899998765432 2111111  11224444555555554 567789999999987654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=6.6e-21  Score=157.88  Aligned_cols=243  Identities=23%  Similarity=0.367  Sum_probs=179.5

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEc
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEV  136 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~  136 (312)
                      ..+.+|++.|.+|...|.|.+|++|+.||+|++|.+.++ .++++.. -.+.|.|++|+|.+.. +++...+..+.+-+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            456899999999999999999999999999999999986 6666654 3468999999997652 222222222333321


Q ss_pred             ---------------------------------CCC----eEEEEeeecCcCeEEEEEccCCCEEEEeeCC---CeEEEE
Q 021459          137 ---------------------------------KTG----KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---GTCKIW  176 (312)
Q Consensus       137 ---------------------------------~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iw  176 (312)
                                                       ...    .-+...-.|..+|..+.|+..|.+|++...+   ..|.|.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                             100    0012233467789999999999999987664   467888


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS  256 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (312)
                      ++........+ ......+..+.|+|...+|++++. ..|++||+..++.++.+.....   .+......++|+.|+.|+
T Consensus       552 QLSK~~sQ~PF-~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k---wiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  552 QLSKRKSQSPF-RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK---WISSMSIHPNGDNLILGS  626 (733)
T ss_pred             ecccccccCch-hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe---eeeeeeecCCCCeEEEec
Confidence            88765544333 233456778889999999998875 5799999988766554432222   244444557899999999


Q ss_pred             cCCeEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          257 EDNCVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       257 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .|+.+..+|+.-. +..+++.-|...+.+|+||+.-+.+++++.||  ++.|+.
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg--tv~Vfh  678 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG--TVIVFH  678 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC--cEEEEe
Confidence            9999999999643 56788899999999999999999999999765  566554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-19  Score=134.47  Aligned_cols=273  Identities=19%  Similarity=0.268  Sum_probs=188.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCC---------c-ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASS---------L-ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..|.+-+++|.+++|+.|..+|.|-+..+..         + ..+-..++|..+|+.++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3466678999999999999999999997653         1 2233457899999999998  45777775 59999886


Q ss_pred             CCCCceee--e-----eeecc-----cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC
Q 021459           93 ARTPFDCL--K-----TLRGH-----SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus        93 ~~~~~~~~--~-----~~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
                      .+...+..  +     ...-|     -..|.++...|..+-++.++.|+.++-||+++|+..+.+++|...+.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            54321100  0     00111     135788888998888888889999999999999999999999999999988555


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcE-------EEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV-------SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      ...+++|++||++++||.++++....+.....+..       ...+..-+..++++|+. ..+.+|+++..+...++.-.
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpip  246 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP  246 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEecc
Confidence            56799999999999999999988776643322211       11334556678887754 46899999988877766533


Q ss_pred             CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEE
Q 021459          234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVW  308 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw  308 (312)
                      ... ..+  .|   ..+.++++++.+.|.-|.++. .+-..++.......+..|+-... .+..+|..  +.+.|+
T Consensus       247 a~v-~~v--~F---~~d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s--~~~~i~  313 (325)
T KOG0649|consen  247 ARV-HLV--DF---VDDCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFS--NKLHIL  313 (325)
T ss_pred             cce-eEe--ee---ecceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccc--eeeeee
Confidence            221 112  22   245778888888999998753 33333443344455566654433 44455543  345443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.5e-20  Score=148.49  Aligned_cols=208  Identities=22%  Similarity=0.398  Sum_probs=161.7

Q ss_pred             eeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccC-CCeEEEEcCCC
Q 021459           16 KTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSD-SHYICSASDDR   86 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~   86 (312)
                      -.+.+|+++|..++|+| +.+.||+|+.|.+|.||.+...       +.+..+.+|...|-.++|+|. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            35789999999999999 5567999999999999987643       346678899999999999996 57899999999


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIV  165 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~  165 (312)
                      .|.+||+.++.. +.++. |.+.|.+++|+.||.++++.+.|..|++||.++++.+..-.+|.+. -.-+.|-.++..+.
T Consensus       155 ~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  155 TVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             eEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999999754 44455 9999999999999999999999999999999999988777677542 33455777888555


Q ss_pred             Eee---CCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCEEE-EEecCCeEEEEEcCCCc
Q 021459          166 SGS---HDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKFIL-VGTLDSTLKLWNYSAGK  225 (312)
Q Consensus       166 ~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~  225 (312)
                      +|-   .+.++.+||..+-.....+ ..+....+-.-.++++.+.+. +|-.|+.||.|.+.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            543   4678999997653221111 112233344556888887664 45679999999987655

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=7.3e-21  Score=158.89  Aligned_cols=124  Identities=25%  Similarity=0.340  Sum_probs=100.0

Q ss_pred             ceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcce--E---EEeeec-cCCEEEEEEccCCCeEEEEcCCC
Q 021459           14 HFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLAL--V---HRFVGH-SEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~---~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      .+..+.+|.+.|+.+.|+| +..+|||++.|..++||.+..+-.  +   ....+| .-.|.++.|+|...-|+..+.-|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4456788999999999999 566899999999999999874321  1   112334 34578999999765555555789


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                      .+++||+.+. +.+..+.+|.+.|.++.|+.||.+++++..|..|++||.+.
T Consensus       151 ~v~i~D~stq-k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  151 SVYITDISTQ-KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEEcccC-ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            9999999885 45677889999999999999999999999999999999764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=4.3e-20  Score=162.18  Aligned_cols=288  Identities=20%  Similarity=0.319  Sum_probs=195.9

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec---cCCEEEEEEcc--CCCeEEEEcCCCeEEEEeC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH---SEGISDLAWSS--DSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~   93 (312)
                      .+...+-..+.|+|-...++++.....|+|||.+.++.+..+..+   ...|+.+++-.  |..++++|+.||.|+||+-
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            344445667899999999999987889999999999888777654   35688888875  4568999999999999974


Q ss_pred             CCC----ceeeeeee-------cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEcc-C
Q 021459           94 RTP----FDCLKTLR-------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNR-D  160 (312)
Q Consensus        94 ~~~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~-~  160 (312)
                      ...    .+.+....       +..+.-.-+.|..+..+|+++|.-..|++||....+....+... ...++++.-+- .
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            321    22222221       11222244667777777777777889999999988777665432 33456554432 4


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCC--cEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEEEE--Ecc
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDP--AVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIY--TGH  233 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~  233 (312)
                      |+.+++|..||.+++||.+....  .......+..  .+-.+.+.++|- .|++|+.+|.|++||++.......+  ..|
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            68999999999999999875432  1111122222  255566777664 4999999999999999875322221  111


Q ss_pred             CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc------C-CccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD------G-HTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      -.-...++.....+....+|+|+. +.|+||++....+ ..++      + -.+.+.|++|||..-.+|+|+.  |.+|-
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~--Ds~V~ 1376 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA--DSTVS 1376 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccC--CceEE
Confidence            111112445555677889999998 9999999864322 2221      1 2346899999999888888864  46888


Q ss_pred             EEee
Q 021459          307 VWVQ  310 (312)
Q Consensus       307 iw~~  310 (312)
                      ||-.
T Consensus      1377 iYs~ 1380 (1387)
T KOG1517|consen 1377 IYSC 1380 (1387)
T ss_pred             Eeec
Confidence            7753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=2.5e-18  Score=143.52  Aligned_cols=269  Identities=10%  Similarity=0.198  Sum_probs=171.7

Q ss_pred             EEEeCCCeEEEEeCCC-cc--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCCCCce--eeeeeecccccEE
Q 021459           38 ASASLDKTVIIWSASS-LA--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDARTPFD--CLKTLRGHSDFVF  111 (312)
Q Consensus        38 ~t~~~d~~i~vw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~~~--~~~~~~~~~~~v~  111 (312)
                      ++...++.|++|++.+ ++  .+..+. +......++++|++++|++++ .++.|.+|++.....  ...... ..+...
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence            3446789999999963 33  334333 345677899999999887664 578899999863211  122221 223456


Q ss_pred             EEEEecCCCEEEEeec-CCcEEEEEcCC-Ce---EEEEeeecCcCeEEEEEccCCCEEEEe-eCCCeEEEEeCCCCceee
Q 021459          112 CVNFNPQSNLIVSGSF-DESIRIWEVKT-GK---CTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGTCKIWDAGEGACLK  185 (312)
Q Consensus       112 ~~~~~~~~~~l~s~~~-dg~i~~wd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~  185 (312)
                      .+.++|+++.+++++. ++.|.+|++.+ +.   ....+. +......++++|++++++++ ..++.|.+||+.+...+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            7999999998887765 78899999964 22   122222 22345678899999888654 456899999997633221


Q ss_pred             E-----cccCCCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCC--CcE--EEEEEccC----CceeEEEEEEEccCCcE
Q 021459          186 T-----LIDDKDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSA--GKF--LKIYTGHT----NKKYCITSTFSVTNGKY  251 (312)
Q Consensus       186 ~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~  251 (312)
                      .     ...........+.++|+|++++++.. ++.|.+||+..  ++.  +..+...+    ...+..... ..+++++
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~-~~pdg~~  241 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH-ITPDGRH  241 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE-ECCCCCE
Confidence            1     01111223455789999999988866 89999999974  332  22222111    111222222 3478888


Q ss_pred             EEEee-cCCeEEEEECCchheeecccCC---ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          252 IVSGS-EDNCVYVWDLQQKTMIQKLDGH---TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       252 l~~~~-~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++++. .++.|.+|++.......++.++   ......++++|++++|+++.. ++++|.+|.++
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~  304 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID  304 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence            88775 4789999998654322222222   124568899999999998764 46799999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=1.2e-21  Score=168.00  Aligned_cols=271  Identities=26%  Similarity=0.444  Sum_probs=208.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +..+.|.+|...|.|..|...|.++++|+.|..++||...+..++....||...|+.++.+.+..++++++.|..|++|-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE---ee-ecCcCeEEEEEccCCCEEEEee
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV---IR-AHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      +.++ ..+..+.+|.+.|.+++|+|-.    +.+.||++++||.+-...+..   .. .....+-++-|..++.-+++++
T Consensus       261 l~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             cCCC-chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            9875 5577789999999999999954    778899999999872211111   11 1123456677778888899999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      .|+.-..|....-.       .+.....++..+.+ ..+.+++-.+-.+++|++.++.......+|....+.+..  .+-
T Consensus       336 ~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~--Hpf  406 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV--HPF  406 (1113)
T ss_pred             CCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee--cCC
Confidence            99988887653211       11111112222212 246666777888999999999988888889887776654  344


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      +.+...+++.||...|||+-.+..++........+..-+|+++|..++..
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            66778899999999999998877665543223455666889888776653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.7e-19  Score=134.43  Aligned_cols=205  Identities=24%  Similarity=0.432  Sum_probs=150.8

Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC----eEEEEeeecCcCeEEEEEcc--CCCEEEEeeCCCeEEEEe
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG----KCTRVIRAHSMPVTSVHFNR--DGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd  177 (312)
                      .+|.+.|.++.|++.|+.+++|+.|++|+|||.+..    .+....+.|.+.|..+.|.+  -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468899999999999999999999999999997543    35567789999999999976  588999999999999997


Q ss_pred             CCCC-------c-eeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEE-------------ccC
Q 021459          178 AGEG-------A-CLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYT-------------GHT  234 (312)
Q Consensus       178 ~~~~-------~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------------~~~  234 (312)
                      -...       + .....+.+....+..+.|.|.  |-.|++++.||.+|||+..+...+..++             .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            5211       1 122233445567888889885  5688999999999999876544333221             112


Q ss_pred             CceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCch----heeecccCCccceEEEEEcCCC----ceEEEeeecC
Q 021459          235 NKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQK----TMIQKLDGHTDSVISVTCHPTE----NKIASAGLDG  301 (312)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~----~~l~~~~~dg  301 (312)
                      ....|+.-...-....+||.|+.+     +.+.||.....    ..+.++.+|.++|..|+|.|.-    ..||+++-| 
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD-  248 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD-  248 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC-
Confidence            223344433222235678888776     57899977543    3466788999999999999973    468888854 


Q ss_pred             CeeEEEEeec
Q 021459          302 DRTVRVWVQD  311 (312)
Q Consensus       302 d~~v~iw~~~  311 (312)
                       + |+||++.
T Consensus       249 -g-v~I~~v~  256 (361)
T KOG2445|consen  249 -G-VRIFKVK  256 (361)
T ss_pred             -c-EEEEEEe
Confidence             4 9999873

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.1e-18  Score=148.03  Aligned_cols=287  Identities=19%  Similarity=0.299  Sum_probs=199.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ..|...+++.++||.++++|+|..||.|.+|.--.    ......+.-|...|.+++|+++|.+|++|+.++.+-+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35777899999999999999999999999995322    12234566788999999999999999999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-----------cCcCeEEEEEccCCCE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-----------HSMPVTSVHFNRDGSL  163 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~  163 (312)
                      ++.  .+.+..-.++|..+.++||++..+..-.|..|.+-...+.....++.+           ..+-.+.+.++|..+.
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            864  344555678899999999999998888999998886644332222211           1233567888997777


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEccc----CCC-C-----cEEEEEECCCCCEEEEEe--------cC--CeEEEEEcCC
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLID----DKD-P-----AVSFAKFSPNGKFILVGT--------LD--STLKLWNYSA  223 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~-~-----~~~~~~~~~~~~~l~~~~--------~d--~~i~v~d~~~  223 (312)
                      ++-.+..|.|++||+.+...+..+..    ... .     .+..+..+-.|.++++.-        .|  -.+++|....
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            88888999999999987665543321    111 1     133344556688888753        22  3578897755


Q ss_pred             CcEEE-----EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee----------cccCCccceEEEEEc
Q 021459          224 GKFLK-----IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ----------KLDGHTDSVISVTCH  288 (312)
Q Consensus       224 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~h~~~v~~l~~~  288 (312)
                      ...-.     +...|... ...++...+.....+++++.||.+++|-+...+.+.          .-.-|..++..++|+
T Consensus       440 ~~kt~~L~T~I~~PH~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CcceeEEEEEEecCCCce-eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence            43221     22233322 222222333334489999999999999874332211          111267789999999


Q ss_pred             CCCceEEEeeecCCeeEEEEeec
Q 021459          289 PTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       289 p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .||..| ++|.|  .+|-+|+++
T Consensus       519 ~dGsll-a~s~~--~~Itiwd~~  538 (792)
T KOG1963|consen  519 QDGSLL-AVSFD--DTITIWDYD  538 (792)
T ss_pred             CCCcEE-EEecC--CEEEEecCC
Confidence            999555 45555  489999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=6.3e-20  Score=137.82  Aligned_cols=285  Identities=18%  Similarity=0.220  Sum_probs=183.1

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +..|++|...|+++.|..+++ |.+|..-|.+.+|.+++...+..++ .+...|+.+.--|+ ..|.+-+.|+.+.+|++
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI   84 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence            345679999999999987766 7889999999999999887776676 46778888888887 45677789999999998


Q ss_pred             CCCceeeeeeecccccEEEEEE-----ecCCC----EEEEeecCC-cEEEEEcCCCeEEEEe----eecCcCeEEEEEcc
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNF-----NPQSN----LIVSGSFDE-SIRIWEVKTGKCTRVI----RAHSMPVTSVHFNR  159 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~-----~~~~~----~l~s~~~dg-~i~~wd~~~~~~~~~~----~~~~~~v~~~~~~~  159 (312)
                      ....- +   ..|.-.+.++-|     +++++    .++.-+... .+.+-|......+...    ....+.+.+..+..
T Consensus        85 a~s~~-i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~  160 (323)
T KOG0322|consen   85 AYSAF-I---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH  160 (323)
T ss_pred             cCcce-E---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence            65311 1   112222222222     22221    112111111 0111221111111111    11223455655432


Q ss_pred             -CCC--EEEEeeCCCeEEEEeCCCCceeeEcc---------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--c
Q 021459          160 -DGS--LIVSGSHDGTCKIWDAGEGACLKTLI---------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--K  225 (312)
Q Consensus       160 -~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~  225 (312)
                       ++.  ++++|.++|.+.+||+.++..+..+.         ..+...+..+.+.+.-..=+.|+.+..+.+|.+...  .
T Consensus       161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs  240 (323)
T KOG0322|consen  161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS  240 (323)
T ss_pred             cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence             233  56788899999999998874433221         123344555556654444466777777888877543  2


Q ss_pred             E-EEE-EE-ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459          226 F-LKI-YT-GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       226 ~-~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      . ++. .. .+. ....+.   ..++++.+||++-||+|++|..++...+..++-|.+.|++|+|+|+.+.+|++|  .|
T Consensus       241 lq~~~e~~lknp-Gv~gvr---IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas--kD  314 (323)
T KOG0322|consen  241 LQIRKEITLKNP-GVSGVR---IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS--KD  314 (323)
T ss_pred             ccccceEEecCC-CccceE---EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc--CC
Confidence            1 111 11 111 112222   237899999999999999999999999999999999999999999999999999  45


Q ss_pred             eeEEEEeec
Q 021459          303 RTVRVWVQD  311 (312)
Q Consensus       303 ~~v~iw~~~  311 (312)
                      .+|.+|+..
T Consensus       315 ~rISLWkLY  323 (323)
T KOG0322|consen  315 ARISLWKLY  323 (323)
T ss_pred             ceEEeeecC
Confidence            699999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.7e-19  Score=139.28  Aligned_cols=222  Identities=19%  Similarity=0.380  Sum_probs=163.4

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcceEEEeee--ccC---CEEEEEEccCCCeEEEEcCCCeEEEEeCC-CCceee-----
Q 021459           32 NDGTLLASASLDKTVIIWSASSLALVHRFVG--HSE---GISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCL-----  100 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~v~~wd~~-~~~~~~-----  100 (312)
                      |+.+++|+.+.+.-|.+||.-++++...+.+  |.+   +..+++|+|||..|++| ..+.|+++|+. .+..+.     
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            6788999999999999999999988766654  333   34689999999999876 67899999983 332211     


Q ss_pred             -eeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCeEEEEe
Q 021459          101 -KTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWD  177 (312)
Q Consensus       101 -~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd  177 (312)
                       +...+..+.+.|++|+|.. +.++.++....+-+|.-..+..+..+.+|...|+.+.|.++|+.|++|.. +..|..||
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence             1123446788999999954 58999999999999988888888888899999999999999999999885 66899999


Q ss_pred             CCCCce-eeEcccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          178 AGEGAC-LKTLIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       178 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      +|.... +..+..+   ....|. ....|.+++|++|+.||.|++||++. +..+..+..+....+.+   ...|--.++
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv---slnP~mpil  355 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV---SLNPIMPIL  355 (406)
T ss_pred             ehhccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccce---ecCccccee
Confidence            987432 2222221   222232 34789999999999999999999987 55455554444332222   222334566


Q ss_pred             EEeecC
Q 021459          253 VSGSED  258 (312)
Q Consensus       253 ~~~~~d  258 (312)
                      ++++..
T Consensus       356 atssGq  361 (406)
T KOG2919|consen  356 ATSSGQ  361 (406)
T ss_pred             eeccCc
Confidence            766554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=7.1e-18  Score=145.81  Aligned_cols=291  Identities=20%  Similarity=0.307  Sum_probs=215.3

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC---CeEEEEcCCCeEEEEeCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS---HYICSASDDRTLRIWDAR   94 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~~wd~~   94 (312)
                      +.+-...-..-.||+|++.++.... ..|.||...++.++..+..|..++.++.+.|..   .++.+++.||.|++||-.
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            3444444445689999998877655 589999999999999999999999999998854   477899999999999864


Q ss_pred             CCce----------------------------------------------------------------------ee----
Q 021459           95 TPFD----------------------------------------------------------------------CL----  100 (312)
Q Consensus        95 ~~~~----------------------------------------------------------------------~~----  100 (312)
                      .+..                                                                      ++    
T Consensus        91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            2100                                                                      00    


Q ss_pred             ----------------------e------eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC--C--eEEEEeeec
Q 021459          101 ----------------------K------TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT--G--KCTRVIRAH  148 (312)
Q Consensus       101 ----------------------~------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~--~--~~~~~~~~~  148 (312)
                                            +      .-..|.-.+.|.+++|.+++++++..||.|.+|.--.  +  .....+..|
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence                                  0      0001223356789999999999999999999995322  2  234567789


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      ...|.+++|+++|.+|++|+..+.+.+|.+.+++  ++++..-...+..+.++||+.+.+....|+.|.+....+.+...
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence            9999999999999999999999999999999887  56677777888999999999999999999999998765544333


Q ss_pred             EEEccCCc-------eeE-EEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-----------CCccceEEEEEcC
Q 021459          229 IYTGHTNK-------KYC-ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----------GHTDSVISVTCHP  289 (312)
Q Consensus       229 ~~~~~~~~-------~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~h~~~v~~l~~~p  289 (312)
                      .+++-...       ..+ .......|..+.++..+..|.|.+||+.+.+.+.+++           -+.-.+.+++.+.
T Consensus       329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~  408 (792)
T KOG1963|consen  329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR  408 (792)
T ss_pred             hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence            33322111       111 1112222445677888899999999998776655542           1233578888888


Q ss_pred             CCceEEEee--------ecCCeeEEEEeec
Q 021459          290 TENKIASAG--------LDGDRTVRVWVQD  311 (312)
Q Consensus       290 ~~~~l~~~~--------~dgd~~v~iw~~~  311 (312)
                      .|++++|.-        .||...+|+|..+
T Consensus       409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  409 FGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             cceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            899998864        3678899999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=2.1e-18  Score=131.30  Aligned_cols=260  Identities=22%  Similarity=0.374  Sum_probs=182.6

Q ss_pred             CCeEEEEeCC--CcceE-EEeeeccCCEEEEEEccC-CCeEEEEcCC-------CeEEEEeCCCCce--------eeeee
Q 021459           43 DKTVIIWSAS--SLALV-HRFVGHSEGISDLAWSSD-SHYICSASDD-------RTLRIWDARTPFD--------CLKTL  103 (312)
Q Consensus        43 d~~i~vw~~~--~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------~~v~~wd~~~~~~--------~~~~~  103 (312)
                      |+.|.+..+.  ...+. ..+..|.+.|..++-+|. .+.|+++-.+       -..-+|.+..+..        ++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            4455554433  33332 335567789999999995 4566666432       1357898765332        22223


Q ss_pred             e-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEee-----ecCcCeEEEEEcc--CCCEEEEeeCCCeEE
Q 021459          104 R-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIR-----AHSMPVTSVHFNR--DGSLIVSGSHDGTCK  174 (312)
Q Consensus       104 ~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~  174 (312)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+.     .+....++-+|+|  +++.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            2 3456899999999999999876 77899999987655 22221     2344567788998  77777664 578999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      .||+|+......+...+...+..+.|.|+.+ +|++++.||.|++||.+..+ .+..+.+|..-.+++  .+.+.-..++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V--Rfn~~hdqLi  274 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV--RFNPEHDQLI  274 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE--EecCccceEE
Confidence            9999998877777777777788889999876 67788999999999998754 466677776655555  4455556789


Q ss_pred             EEeecCCeEEEEECCch-----------------------------heeecccCCccceEEEEEcCCCce-EEEeeecCC
Q 021459          253 VSGSEDNCVYVWDLQQK-----------------------------TMIQKLDGHTDSVISVTCHPTENK-IASAGLDGD  302 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~p~~~~-l~~~~~dgd  302 (312)
                      ++|+.|..|.+|....-                             ..+.++..|++.|.+++|+.-.++ +|+-|+|| 
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG-  353 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG-  353 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc-
Confidence            99999999999954210                             123356679999999999877665 56668886 


Q ss_pred             eeEEEE
Q 021459          303 RTVRVW  308 (312)
Q Consensus       303 ~~v~iw  308 (312)
                       +|.|=
T Consensus       354 -RviIs  358 (370)
T KOG1007|consen  354 -RVIIS  358 (370)
T ss_pred             -eEEee
Confidence             45543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1e-19  Score=152.13  Aligned_cols=238  Identities=16%  Similarity=0.317  Sum_probs=167.2

Q ss_pred             ECCCCCEEEE--EeCCCeEEEEeCCCc-ce----EEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC-----
Q 021459           30 FSNDGTLLAS--ASLDKTVIIWSASSL-AL----VHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP-----   96 (312)
Q Consensus        30 ~s~~~~~l~t--~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~-----   96 (312)
                      |+.+..++|.  ++..|.|-||++..- ++    +..+. ....|+++.|.| |.+.|+++++||.|++|.+...     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            4444455554  466789999998753 22    11121 345689999999 6789999999999999987542     


Q ss_pred             -ceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           97 -FDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        97 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                       ...-+.+.+|...|.++.|+| ..+.|+++++|.+|++||+.+++....+.+|...|..++|+|+|+.+++.+.||+++
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence             123456778999999999999 456899999999999999999998889999999999999999999999999999999


Q ss_pred             EEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEEEEecC----CeEEEEEcCCCc--EEEEEEccCCceeEEEEEEEcc
Q 021459          175 IWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFILVGTLD----STLKLWNYSAGK--FLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       175 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +|+.+++... .+-.+..+..-..+.|.-+|+++++.+.|    .+|.+||.+.-.  .+.+..-.... ..+.-.+...
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~D  824 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYD  824 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCC
Confidence            9999876432 22111111222234466689998887766    467888865433  22221111111 1111112223


Q ss_pred             CCcEEEEeecCCeEEEEECCch
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .+-++++|-.|..|.+|.+-..
T Consensus       825 s~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  825 SNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             CceEEEecCCCceEEEEEecCC
Confidence            4567899999999999988543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=5.8e-19  Score=148.47  Aligned_cols=242  Identities=21%  Similarity=0.424  Sum_probs=174.5

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..++++.+|++.|.|++|+.||+++|+|+.|+.+.+|+..-...+ ++ .|.+.|.++.|+|-.+.|++|+-+ ..-+|.
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS  120 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWS  120 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence            456789999999999999999999999999999999986533222 22 499999999999999999998754 356787


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCC-----CEEE
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDG-----SLIV  165 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~l~  165 (312)
                      ....  .+... .....+.+++|..||.+++-|-.+|+|.+-+-...+....-+  +...+|++++|+|..     ..++
T Consensus       121 ~~qK--~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a  197 (1081)
T KOG1538|consen  121 PEQK--SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA  197 (1081)
T ss_pred             hhhh--hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence            6432  12111 134568899999999999999999999998644333333322  356789999999953     3667


Q ss_pred             EeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +.....++.++.+.. +.+. ...-..+  ..++.+-++|.+++.|+.|+.+++|. +.|-.+.+...  ...+ +-...
T Consensus       198 V~DW~qTLSFy~LsG-~~Igk~r~L~Fd--P~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~--~D~W-IWtV~  270 (1081)
T KOG1538|consen  198 VADWGQTLSFYQLSG-KQIGKDRALNFD--PCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE--QDSW-IWTVQ  270 (1081)
T ss_pred             EEeccceeEEEEecc-eeecccccCCCC--chhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc--ccee-EEEEE
Confidence            777777777776543 3222 1111222  24456789999999999999999996 44544444332  1222 33334


Q ss_pred             EccCCcEEEEeecCCeEEEEECC
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ..|++..++.|..||+|..|++-
T Consensus       271 ~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  271 AKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EccCCceEEEEEccCeeehhhhH
Confidence            45889999999999999999873

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=6.1e-19  Score=144.75  Aligned_cols=187  Identities=26%  Similarity=0.349  Sum_probs=146.0

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+...+|.+.|.+-+|+|||.-|+|+|.||.|++|+-. +.+...+-....+|+|++|.|+.+.++-|. .+.+.+=-+.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~  174 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLA  174 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecc
Confidence            34567899999999999999999999999999999744 444444455678899999999877665553 3455554443


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      .. ..+...+.|++.|.++.|++.++.+++|+.|-..++||-. |+.+..-..|..+|++++|.|+ +.++.++.+ +.+
T Consensus       175 ~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R  250 (737)
T KOG1524|consen  175 AN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR  250 (737)
T ss_pred             cc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee
Confidence            32 2345678999999999999999999999999999999954 6666677789999999999999 666766653 333


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW  219 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~  219 (312)
                                  +.......+..++|++||..+++|+..|.+.+=
T Consensus       251 ------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  251 ------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ------------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence                        222334567778999999999999999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.5e-18  Score=149.19  Aligned_cols=235  Identities=18%  Similarity=0.208  Sum_probs=161.9

Q ss_pred             CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCce-eeeeeecccccEEEEEEecC
Q 021459           43 DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQ  118 (312)
Q Consensus        43 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~  118 (312)
                      +..|.+||..... ...+..|...+.+++|+|||+.|+.++.+   ..|++||+.++.. .+....++   ...++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4689999987655 34566677889999999999999887653   3699999976532 23333333   346899999


Q ss_pred             CCEEEEee-cCCcEEEE--EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCceeeEcccCCCCc
Q 021459          119 SNLIVSGS-FDESIRIW--EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGACLKTLIDDKDPA  194 (312)
Q Consensus       119 ~~~l~s~~-~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (312)
                      ++.|+.+. .+|.+.+|  |+.+++. ..+..+...+....|+|||+.++..+ .++...+|++............. . 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-
Confidence            99887764 67765555  6666654 34445556678899999999776554 57788888764322111222222 1 


Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC--Cchhee
Q 021459          195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL--QQKTMI  272 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~  272 (312)
                       ....|+|+|++|+..+.++ +.+||+.+++..........     ....+.+++++|+.++.+|.+.+|++  .++...
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~  408 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK  408 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-----CCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence             2356999999998887764 56699988765433222111     11224578999999999998888876  346677


Q ss_pred             ecccCCccceEEEEEcCCC
Q 021459          273 QKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       273 ~~~~~h~~~v~~l~~~p~~  291 (312)
                      ..+.+|.+.+...+|+|-.
T Consensus       409 ~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        409 ARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             EEccCCCCCCCCcccCCCC
Confidence            7888888889999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=3.2e-18  Score=130.38  Aligned_cols=249  Identities=22%  Similarity=0.345  Sum_probs=175.9

Q ss_pred             eeecccccceEEEEECC-CCCEEEEEeCC-------CeEEEEeCCC---------cceEEEee-eccCCEEEEEEccCCC
Q 021459           16 KTLTAHSRAVSCVKFSN-DGTLLASASLD-------KTVIIWSASS---------LALVHRFV-GHSEGISDLAWSSDSH   77 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~-~~~~l~t~~~d-------~~i~vw~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~   77 (312)
                      +.|..|.+.|..++-+| +.++|+|+..+       ..+-||.+..         .+.+..+. .+-+.|.++.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            45667889999999999 55667776542       2457887643         22333333 3446899999999999


Q ss_pred             eEEEEcCCCeEEEEeCCCCceeeeee-----ecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEe-eecC
Q 021459           78 YICSASDDRTLRIWDARTPFDCLKTL-----RGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHS  149 (312)
Q Consensus        78 ~l~~~~~d~~v~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~  149 (312)
                      .|++-. |..|.+|++....+....+     .++.....+-+|+|  +++.+++. .|+++..||+++.++...+ .+|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence            998764 8899999998765422222     12445567788988  67777775 5889999999988766555 4788


Q ss_pred             cCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCc--
Q 021459          150 MPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGK--  225 (312)
Q Consensus       150 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~--  225 (312)
                      ..+..+.|+|+.+ +|++|+.||.|++||.|..+....-...+.-.+..+.|.|.- +++++++.|..|.+|....-.  
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence            8899999999876 577899999999999997665444445555567788888854 577888999999998643211  


Q ss_pred             ---------------------------EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          226 ---------------------------FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       226 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                                                 .+..+..|....++.  .++..++=++|+-+.||++.|=.+..
T Consensus       295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccCcchhhHHhcccccccccccccccccceEEE--eeccCCCeeEEEeccCceEEeecCCh
Confidence                                       112334444444444  45555666789999999998876643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.9e-19  Score=141.73  Aligned_cols=195  Identities=21%  Similarity=0.346  Sum_probs=152.3

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee--
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL--  103 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~--  103 (312)
                      .+++|+++|..|++++.||.+|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++.. +...  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence            678999999999999999999999988887777777899999999999999999999999 899999988632 2222  


Q ss_pred             ecccccEEEEEEecCC---CEEE--EeecCCcEEEEEcCCCeE---E--EEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459          104 RGHSDFVFCVNFNPQS---NLIV--SGSFDESIRIWEVKTGKC---T--RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~---~~l~--s~~~dg~i~~wd~~~~~~---~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      ..-+.....+.|+.|+   .+++  .....+.|..||+.....   .  +........|.+++.+++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            2233445677888776   3333  333446677777643211   1  1111123468999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      .+++..+-+.+.-....|...++.+.|+|+.++++.-+.+.+..+.-+.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999988887776667777789999999999999998888888887654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=4.3e-17  Score=140.12  Aligned_cols=263  Identities=16%  Similarity=0.198  Sum_probs=179.1

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCcee----e-eeeecccccEEEEEEec
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDC----L-KTLRGHSDFVFCVNFNP  117 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~----~-~~~~~~~~~v~~~~~~~  117 (312)
                      +.+.+|++.+.........-...|.+++|+| +..+++.|..+|+|.+||++.....    + .....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4789999887632223333467899999999 5678899999999999999765331    1 12235888999999966


Q ss_pred             CC--CEEEEeecCCcEEEEEcCCCeEEE------Eee------ecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEe---CC
Q 021459          118 QS--NLIVSGSFDESIRIWEVKTGKCTR------VIR------AHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWD---AG  179 (312)
Q Consensus       118 ~~--~~l~s~~~dg~i~~wd~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd---~~  179 (312)
                      +.  .-+++++.||.|..|+++.-....      ...      .....+++++|.+ +...|+.|+.+|.|.--+   .+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            43  459999999999999886432211      111      1123578899988 556899999999887632   22


Q ss_pred             CCc----eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC-CCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          180 EGA----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       180 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      ...    ........+...+..+.++|-+..++..+.|-++++|... ....+..+..+..  +.....+++.....+++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceEEEE
Confidence            211    0011122245567778888877766665569999999876 4444444433333  23445667667788999


Q ss_pred             eecCCeEEEEECCch--heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          255 GSEDNCVYVWDLQQK--TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +..||.|.+||+...  .++....-+......+.|++.++.|+.|...  +++++|++
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--G~~~~~~l  515 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--GTTHILKL  515 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--CcEEEEEc
Confidence            999999999999654  3444444455566777888889899888755  57888876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=9.6e-21  Score=162.45  Aligned_cols=241  Identities=30%  Similarity=0.542  Sum_probs=186.9

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW  134 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w  134 (312)
                      +.+.++.+|..+|+|..|...|.++++|++|..++||.+++. .++....||.+.+..++.+.++..+++++.|..|++|
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            344567899999999999999999999999999999998875 6788899999999999998888889999999999999


Q ss_pred             EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee---eEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL---KTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      -+..+..+..+++|.+.|++++|+|-.    +.+.||++++||.+-...+   +......+..+..+.+..++.-+++++
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999999953    7789999999998721111   111111223345556777888889999


Q ss_pred             cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC
Q 021459          212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~  291 (312)
                      .|+.-..|.+.....      +...  .+.+........+.+++-.+-.+.+|++.++.+...+.+|.+.+.-+.+||-+
T Consensus       336 ~d~ea~n~e~~~l~~------~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAW------RSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             CCcccccchhhHhhh------hccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            998887776532211      1111  01111111223466777788899999999999999999999999999999987


Q ss_pred             ceEE-EeeecCCeeEEEEee
Q 021459          292 NKIA-SAGLDGDRTVRVWVQ  310 (312)
Q Consensus       292 ~~l~-~~~~dgd~~v~iw~~  310 (312)
                      ..++ ++|.||  ...||+.
T Consensus       408 ~ri~msag~dg--st~iwdi  425 (1113)
T KOG0644|consen  408 PRIAMSAGYDG--STIIWDI  425 (1113)
T ss_pred             cHhhhhccCCC--ceEeeec
Confidence            6654 677664  7889985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=1.5e-16  Score=132.78  Aligned_cols=242  Identities=13%  Similarity=0.198  Sum_probs=154.0

Q ss_pred             ccceEEEEECCCCCEEEEE-eCCCeEEEEeCC-Ccce--EEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCC
Q 021459           22 SRAVSCVKFSNDGTLLASA-SLDKTVIIWSAS-SLAL--VHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWDARTP   96 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~   96 (312)
                      ......++++|++++|+.+ ..++.|.+|++. ++.+  ..... .......++++|++++|++++. ++.|.+|++++.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            4567788999999988765 457889999886 3332  22221 2345678999999998888764 789999998642


Q ss_pred             c---eeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEE-----ee-ecCcCeEEEEEccCCCEEEE
Q 021459           97 F---DCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRV-----IR-AHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        97 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~  166 (312)
                      .   +.+....+ .....+++++|+++++++++ .++.|.+||+.+...+..     .. ........+.|+|+++++++
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence            1   11222222 23356688999999886555 558999999976332211     11 11234568899999999988


Q ss_pred             eeC-CCeEEEEeCCC--Cce--eeEccc--C---CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCc-EEEEEEccC
Q 021459          167 GSH-DGTCKIWDAGE--GAC--LKTLID--D---KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGK-FLKIYTGHT  234 (312)
Q Consensus       167 ~~~-d~~i~iwd~~~--~~~--~~~~~~--~---~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~-~~~~~~~~~  234 (312)
                      +.. ++.|.+|++..  ++.  ...+..  .   .......+.++|++++++++. .++.|.+|++.... ..... .+.
T Consensus       192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~  270 (330)
T PRK11028        192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQ  270 (330)
T ss_pred             EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEE
Confidence            776 89999999873  221  222211  1   011122467899999999885 47899999986433 22211 111


Q ss_pred             C-ceeEEEEEEEccCCcEEEEeec-CCeEEEEECC
Q 021459          235 N-KKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQ  267 (312)
Q Consensus       235 ~-~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  267 (312)
                      . ....... ...+++++|++++. ++.|.+|++.
T Consensus       271 ~~~~~p~~~-~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        271 PTETQPRGF-NIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eccccCCce-EECCCCCEEEEEEccCCcEEEEEEc
Confidence            0 0011112 23467888877664 8999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=6.7e-19  Score=144.89  Aligned_cols=213  Identities=21%  Similarity=0.378  Sum_probs=161.5

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccC--CCeEEEEcCCCeEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSD--SHYICSASDDRTLR   89 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~   89 (312)
                      .+.+.|+||++=|+||.|+.+|.+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-|.  .+.+++|+.|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            445678999999999999999999999999999999999988888776 489999999999994  56899999999999


Q ss_pred             EEeCCC---------CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEE-EEe---------eecC
Q 021459           90 IWDART---------PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCT-RVI---------RAHS  149 (312)
Q Consensus        90 ~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~-~~~---------~~~~  149 (312)
                      ++|+..         ..+.......|...|..++-.|++ +.+.+++.||+|+-+|++..... ...         ...-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999874         223344456688888889888887 88999999999999999863211 111         1111


Q ss_pred             cCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCc------------------eeeEcccCC-----------CCcEEEEE
Q 021459          150 MPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGA------------------CLKTLIDDK-----------DPAVSFAK  199 (312)
Q Consensus       150 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~-----------~~~~~~~~  199 (312)
                      ....++..+|. ..+|++|+.|-..++||.+...                  ++.-+...+           ...++.+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            34578889984 4688899999999999943210                  011111000           11256678


Q ss_pred             ECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459          200 FSPNGKFILVGTLDSTLKLWNYSAGK  225 (312)
Q Consensus       200 ~~~~~~~l~~~~~d~~i~v~d~~~~~  225 (312)
                      |+|+|.-|++.-..-.|++||+..++
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            99999988887666789999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=2e-17  Score=131.46  Aligned_cols=255  Identities=24%  Similarity=0.383  Sum_probs=172.7

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC--------C--------cceEEEeeeccCCEEEEEEccC
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS--------S--------LALVHRFVGHSEGISDLAWSSD   75 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~   75 (312)
                      ......|..|..+|++++|+|+|++||+|+.+|.|.+|-..        +        ......+.+|...|+.++|+|+
T Consensus        55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence            44556788999999999999999999999999999999654        2        2234456789999999999999


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---------
Q 021459           76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---------  146 (312)
Q Consensus        76 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---------  146 (312)
                      +.++++++.|..+++||+..+ .....+..|...+.-++|.|-++++++-+.|...+.+.+...+......         
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~  213 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF  213 (434)
T ss_pred             CceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence            999999999999999999886 5677788899999999999999999998888877777665433221110         


Q ss_pred             ----------ecCc----CeEEEEEccCCCEEEEeeC----CCe-----EEEEeCCCC-ceeeEcccCCCCcEEEEEE--
Q 021459          147 ----------AHSM----PVTSVHFNRDGSLIVSGSH----DGT-----CKIWDAGEG-ACLKTLIDDKDPAVSFAKF--  200 (312)
Q Consensus       147 ----------~~~~----~v~~~~~~~~~~~l~~~~~----d~~-----i~iwd~~~~-~~~~~~~~~~~~~~~~~~~--  200 (312)
                                .|..    -...++|+|+|.++++...    .+.     .++|+-..- +....+..... ..-.+.+  
T Consensus       214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~p  292 (434)
T KOG1009|consen  214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSP  292 (434)
T ss_pred             CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeee
Confidence                      0111    1245788999998887542    122     233321110 01111111111 1111111  


Q ss_pred             ----------------CCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEE
Q 021459          201 ----------------SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYV  263 (312)
Q Consensus       201 ----------------~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  263 (312)
                                      -|-+..+|+++ .+.|++||.++...+..... |-.   .++-..+.++|..|+..+.||...+
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~---~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYS---AITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeee---eecceeecCCCcEEEEeccCCceEE
Confidence                            12333455555 45799999877666554432 222   2333445578999999999999988


Q ss_pred             EECCchhee
Q 021459          264 WDLQQKTMI  272 (312)
Q Consensus       264 wd~~~~~~~  272 (312)
                      --++..++-
T Consensus       369 vtfe~~elg  377 (434)
T KOG1009|consen  369 VTFEPWELG  377 (434)
T ss_pred             EEEcchhcc
Confidence            877665543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=4.8e-17  Score=124.11  Aligned_cols=272  Identities=19%  Similarity=0.272  Sum_probs=186.0

Q ss_pred             cceEEEEECC--C-CCEEEEEeC----CCeEEEEeC--CCcceEEEe-eeccCCEEEEEEccCC-----CeEEEEcCCCe
Q 021459           23 RAVSCVKFSN--D-GTLLASASL----DKTVIIWSA--SSLALVHRF-VGHSEGISDLAWSSDS-----HYICSASDDRT   87 (312)
Q Consensus        23 ~~v~~~~~s~--~-~~~l~t~~~----d~~i~vw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~d~~   87 (312)
                      -++.++.|+.  + ..+||.|+.    .+.|.+..+  .+++.+..- ..|..+++.+-|.|+.     ++||+++  ..
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            3577888883  3 346777764    345655433  344443322 4588999999999975     3666643  47


Q ss_pred             EEEEeCCCCce--ee------eeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEE
Q 021459           88 LRIWDARTPFD--CL------KTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSV  155 (312)
Q Consensus        88 v~~wd~~~~~~--~~------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~  155 (312)
                      +++|.+.....  ..      ..-..+..++.+..|+. +.+++.+++.|.+..+||++++..   ...+-+|...|..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            99998763111  11      01123567888888876 678999999999999999998743   44667899999999


Q ss_pred             EEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCC--CcEEEEEECCC-CCEEEEEec-CCeEEEEEcCCCc-EEEE
Q 021459          156 HFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKD--PAVSFAKFSPN-GKFILVGTL-DSTLKLWNYSAGK-FLKI  229 (312)
Q Consensus       156 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~~~-d~~i~v~d~~~~~-~~~~  229 (312)
                      +|...+ ..|++.+.||.+++||+|.-.-...+.....  .....++|+++ -+++|+-.. ...|.|.|++... .+..
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            999855 4789999999999999997543333332222  22333445553 456666544 4679999998654 5677


Q ss_pred             EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---eeccc--CCccceEEEEEcCC-CceEEEee
Q 021459          230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM---IQKLD--GHTDSVISVTCHPT-ENKIASAG  298 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~l~~~p~-~~~l~~~~  298 (312)
                      +++|....+.+  .+.+.....|+++++|..+.+||+.+...   ...+-  .-++.|+.+.|+|. +.+++.+.
T Consensus       283 L~~H~a~VNgI--aWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  283 LRNHQASVNGI--AWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             hhcCcccccce--EecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            88888776655  45556778999999999999999965322   11111  13567999999964 56788776

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=2.3e-17  Score=141.85  Aligned_cols=243  Identities=19%  Similarity=0.237  Sum_probs=169.7

Q ss_pred             cccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcce--EE----EeeeccCCEEEEEEccCC--CeEEEEcCCCeEEEE
Q 021459           21 HSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLAL--VH----RFVGHSEGISDLAWSSDS--HYICSASDDRTLRIW   91 (312)
Q Consensus        21 h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w   91 (312)
                      -..+|+|++|+| +.++++.|..+|.|.+||...+..  ..    ....|..++..+.|..+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            456899999999 567888899999999999987654  22    234688999999998754  448999999999999


Q ss_pred             eCCCCceeee-----eee------cccccEEEEEEec-CCCEEEEeecCCcEEEEEc---CCCe-----EEEEeeecCcC
Q 021459           92 DARTPFDCLK-----TLR------GHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV---KTGK-----CTRVIRAHSMP  151 (312)
Q Consensus        92 d~~~~~~~~~-----~~~------~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~---~~~~-----~~~~~~~~~~~  151 (312)
                      +++.-.....     ...      .-...+.+++|.+ +.+.++.|+.+|.|..=..   +...     ....+..|..+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8764221110     000      1123567888887 4567999999999876332   2221     12245567889


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEeCC-CCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEE-
Q 021459          152 VTSVHFNRDGSLIVSGSHDGTCKIWDAG-EGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLK-  228 (312)
Q Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~-  228 (312)
                      |+++.++|-+..++..+.|-++++|... ....+..+.. ....+..++|||-.. .++++..||.+.+||+....... 
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            9999999977655555559999999876 3333333322 233377889999764 66677789999999997554322 


Q ss_pred             -EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          229 -IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                       .....   .......+..+.+++|+.|...|.+.+|++.
T Consensus       480 ~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  480 LSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence             22212   2233445566779999999999999999995

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=2.3e-17  Score=127.34  Aligned_cols=204  Identities=21%  Similarity=0.317  Sum_probs=162.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      -..+|+|-+|++|+..+|.+..+..+.||...+.   +..+.+..|...|+.++|+|..+.|++|+.|+.-++|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            3578999999999999999999999999987654   4667888999999999999999999999999999999873322


Q ss_pred             e--eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE----EEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           98 D--CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT----RVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        98 ~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      .  ..-.+..+...+.++.|+|.++.+++|+....|.+|-.+.+..-    ..-+.+...|.++.|+|++-++++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            1  22234457888999999999999999999999999877654321    12234567899999999999999999999


Q ss_pred             eEEEEeCC-----CC-------------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459          172 TCKIWDAG-----EG-------------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK  225 (312)
Q Consensus       172 ~i~iwd~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  225 (312)
                      .+++|..-     +.             +...+. .....-+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99998531     10             111111 1234457778899999999999999999999876654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=1.7e-17  Score=126.55  Aligned_cols=243  Identities=21%  Similarity=0.335  Sum_probs=168.2

Q ss_pred             CCEEEEEEcc--C-CCeEEEEcC----CCeEEEEeCC--CCceeeeeeecccccEEEEEEecCCC-----EEEEeecCCc
Q 021459           65 EGISDLAWSS--D-SHYICSASD----DRTLRIWDAR--TPFDCLKTLRGHSDFVFCVNFNPQSN-----LIVSGSFDES  130 (312)
Q Consensus        65 ~~v~~~~~~~--~-~~~l~~~~~----d~~v~~wd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~dg~  130 (312)
                      ..+..+.|+.  + +.+|+.|+.    .+.|.+..+.  +.......-..|.-++..+.|.|+..     +|++++  ..
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            4567788873  3 447777764    3455555433  22111112235778899999999763     455543  47


Q ss_pred             EEEEEcCCCeEE----EE-----eeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcEEEE
Q 021459          131 IRIWEVKTGKCT----RV-----IRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAVSFA  198 (312)
Q Consensus       131 i~~wd~~~~~~~----~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~  198 (312)
                      +++|.+......    ..     -..+..+++++.|+. +.+++.+++-|-++.+||+.++..  +++.+-.++..+..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            999988632111    11     123456899999986 667899999999999999998643  344344566678888


Q ss_pred             EECCCC-CEEEEEecCCeEEEEEcCCCcEEE-EEEccCCceeEEEEEEEccCCcEEEEeec-CCeEEEEECCch-heeec
Q 021459          199 KFSPNG-KFILVGTLDSTLKLWNYSAGKFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQQK-TMIQK  274 (312)
Q Consensus       199 ~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~  274 (312)
                      +|...+ +.+|+.+.||.||+||++..+--. +++........+...+...+.+++|+-.. ...|.+-|++.. ..+.+
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            888855 477888999999999999876433 34443323334555666677888887544 467899999764 56788


Q ss_pred             ccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEeec
Q 021459          275 LDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       275 ~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +++|.+.|+.++|.|.. +.|+++|  .|.++.||++.
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~  318 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQ  318 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecC--CcceEEEEecc
Confidence            99999999999999975 5788887  45799999974

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8e-17  Score=120.02  Aligned_cols=233  Identities=16%  Similarity=0.221  Sum_probs=159.3

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCC---------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDART---------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~  136 (312)
                      .|..-+|+|.+++|++|+.+|.|.+..+..         +...+...++|++++..++|..  .+|++++ ||.|+-|.-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            355667999999999999999999998743         2233455678999999999983  4677766 599998865


Q ss_pred             CCCeE----EE----EeeecC-----cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC
Q 021459          137 KTGKC----TR----VIRAHS-----MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN  203 (312)
Q Consensus       137 ~~~~~----~~----~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (312)
                      +....    ..    ...-|.     -.|+++...|..+.++.++.|+.+..||+++|+..+.+.++.+. +..+.....
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeeccc
Confidence            43211    00    001111     13788999998888888889999999999999998888776665 444444444


Q ss_pred             CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-------eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-------YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       204 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      ...+++|+.||++|+||.++++.++.+.....+.       ..+.+  ...+..+|++|+. -.+.+|+++..+....+.
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgG-p~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCC-CceeEEeccCCCceEEEe
Confidence            5678999999999999999999887765432211       11221  2245778887765 469999998876655543


Q ss_pred             CCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          277 GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       277 ~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                       -.+.|..+.|-.  ..++++|.  .+.|..|..
T Consensus       245 -ipa~v~~v~F~~--d~vl~~G~--g~~v~~~~l  273 (325)
T KOG0649|consen  245 -IPARVHLVDFVD--DCVLIGGE--GNHVQSYTL  273 (325)
T ss_pred             -cccceeEeeeec--ceEEEecc--ccceeeeee
Confidence             234556667743  34555542  235555543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=1.7e-18  Score=139.65  Aligned_cols=262  Identities=18%  Similarity=0.269  Sum_probs=197.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS  107 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~  107 (312)
                      +.++.+|+.++.|+..|.+-.+|..++.+...+. -.+.|.++.|-.+.+++|++ ....+++||-.. .+ +..++.| 
T Consensus       135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tE-lHClk~~-  209 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TE-LHCLKRH-  209 (545)
T ss_pred             eeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCC-cE-Eeehhhc-
Confidence            7899999999999999999999999998876665 34678999999999988876 677899999653 22 3334434 


Q ss_pred             ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (312)
                      ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+......+..+.-+|-+..+-+|...|+|.+|.....+.+..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            46788999998888999999999999999999998888877788889999998889999999999999999887776666


Q ss_pred             ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          188 IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +.+ ...+..+++.++|.++++.+.|..++|||+++-..+..+...... ..+.  +  . .+-+++.+....|.+|.-.
T Consensus       290 LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a-~~ls--~--S-qkglLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  290 LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA-SNLS--L--S-QKGLLALSYGDHVQIWKDA  362 (545)
T ss_pred             Hhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc-cccc--c--c-cccceeeecCCeeeeehhh
Confidence            554 466888999999999999999999999999987765554431111 1111  1  1 2234444555679999432


Q ss_pred             -c--hheeecccCC--ccceEEEEEcCCCceEEEeeecC
Q 021459          268 -Q--KTMIQKLDGH--TDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       268 -~--~~~~~~~~~h--~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                       .  ......+-.|  .+.|..|.|-|-+..|-.|-..|
T Consensus       363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence             1  1111111122  34788888888776666655444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.3e-18  Score=134.89  Aligned_cols=190  Identities=24%  Similarity=0.384  Sum_probs=141.4

Q ss_pred             EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-c
Q 021459          111 FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-D  189 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~  189 (312)
                      .+++|++++..+++++.||++++|+..+...+.....|...|.++.|+|||+++++.+.| ..++|+.+++..+.... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            678999999999999999999999987777777777888999999999999999999999 89999999986655443 3


Q ss_pred             CCCCcEEEEEECCCC---CEEEEE--ecCCeEEEEEcCCC---cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459          190 DKDPAVSFAKFSPNG---KFILVG--TLDSTLKLWNYSAG---KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV  261 (312)
Q Consensus       190 ~~~~~~~~~~~~~~~---~~l~~~--~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  261 (312)
                      ..+..+..+.|+.++   .+.+.+  ..-+.|+.||+...   ..++..+ .......+.+.....+|++++.|+.||.|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            344556667777766   333222  33456666665321   1111111 01111234555556899999999999999


Q ss_pred             EEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCC
Q 021459          262 YVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       262 ~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      .+++..+-+.++.. +.|...|+.|.|+|+.+++++.+.|..
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence            99999877666554 469999999999999999999886643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.3e-18  Score=131.48  Aligned_cols=250  Identities=19%  Similarity=0.306  Sum_probs=167.4

Q ss_pred             eceeeecccccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCcceEEEe--eecc-CCEEEEEEccCCCeEEEEc----
Q 021459           13 RHFKTLTAHSRAVSCVKFSN--DGTLLASASLDKTVIIWSASSLALVHRF--VGHS-EGISDLAWSSDSHYICSAS----   83 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~----   83 (312)
                      +.++.+.+|...++.++|..  ..+.+.+++.||.|++||+.......++  .+++ .+..+++....++.+++|.    
T Consensus        61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence            45567788999999999976  4568999999999999999876554443  4454 3556777766777888774    


Q ss_pred             CCCeEEEEeCCCCceeeee-eecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEEEEc
Q 021459           84 DDRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFN  158 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~  158 (312)
                      .+-.|.+||++...+.+.. ...|.+.|.+++|+|. .++|++|+-||.|.+||++....   +...-.+...|..+.|.
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~  220 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL  220 (376)
T ss_pred             CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence            3568999999876553433 4569999999999995 57999999999999999975422   12222356678999998


Q ss_pred             cCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCC------------CCcEEEEEECC-CCCEEEEEec-CCeEEEEEcC-
Q 021459          159 RDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDK------------DPAVSFAKFSP-NGKFILVGTL-DSTLKLWNYS-  222 (312)
Q Consensus       159 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~l~~~~~-d~~i~v~d~~-  222 (312)
                      .++ +.+.+-+......+|++..+.....+....            +..+.  ..+| +...++.++. -+...++-+. 
T Consensus       221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~  298 (376)
T KOG1188|consen  221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVD  298 (376)
T ss_pred             cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeee
Confidence            876 457888888999999998776433221110            11111  2333 3445555544 4555554332 


Q ss_pred             --CCc---EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          223 --AGK---FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       223 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                        ++.   .+..++++...  .+........+.++.||++||.+.+|..
T Consensus       299 ~~s~~~~~~~a~l~g~~~e--iVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  299 TSSGSLLTEPAILQGGHEE--IVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccccccCccccccCCcHH--HHHHHhhhcccceeeccCCCceEEEEec
Confidence              222   23334442221  1111222345789999999999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=9.1e-17  Score=138.28  Aligned_cols=207  Identities=21%  Similarity=0.227  Sum_probs=141.4

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLR   89 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~   89 (312)
                      +.+..|...+...+|||||+.|+..+.+   ..|++||+.+++.  +..+.+   ....++|+|||+.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEE
Confidence            4566788899999999999999887643   3699999987653  222333   344689999999888764 577665


Q ss_pred             EE--eCCCCceeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEccCCCEEE
Q 021459           90 IW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        90 ~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      +|  |+.+.  ....+..+...+....|+||++.++..+ .+|...+|++.... ....+ .+..  ....|+|+|+.++
T Consensus       274 Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia  348 (429)
T PRK01742        274 IYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLV  348 (429)
T ss_pred             EEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEE
Confidence            55  55543  2344555666778899999999776554 57888888764321 12222 2332  4578999999998


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc--CCCcEEEEEEccC
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY--SAGKFLKIYTGHT  234 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~  234 (312)
                      ..+.++ +.+||+.++.... +....  ......|+|+|++|+.++.++...+|++  .+++....+..+.
T Consensus       349 ~~~~~~-i~~~Dl~~g~~~~-lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        349 MINGDN-VVKQDLTSGSTEV-LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             EEcCCC-EEEEECCCCCeEE-ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence            887765 5569998776432 11111  1234569999999999999998888775  3466555555443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=1.5e-16  Score=123.60  Aligned_cols=274  Identities=21%  Similarity=0.366  Sum_probs=180.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecc
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGH  106 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~  106 (312)
                      .+|||+|+++|+++.- .+.|-|..+.+..+.+.. -+.|.-+.|..|..+++ ....++.|.+|++..+. -...+...
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg   90 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEG   90 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccC
Confidence            5899999999998775 788888887765443322 34577789998876555 44668899999998753 33344455


Q ss_pred             cccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---------------
Q 021459          107 SDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---------------  170 (312)
Q Consensus       107 ~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  170 (312)
                      ...+.+++|+|||+ .|.+...+-.|.+|.+.+.+.... +-.+..+..++|+|||++.+..++.               
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            67788999999995 566778889999999998775432 2233456888999999987766542               


Q ss_pred             ---------------------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE---
Q 021459          171 ---------------------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF---  226 (312)
Q Consensus       171 ---------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---  226 (312)
                                           +.+.+||..-...+.  .-+-+-.+..+.|+|.+++|++|+.|+.+|+.+--+-+.   
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence                                 123344422211111  111223466788999999999999999988754211000   


Q ss_pred             -EE-------------------------E--E-----Ecc---------------------------CCceeEEEEEEEc
Q 021459          227 -LK-------------------------I--Y-----TGH---------------------------TNKKYCITSTFSV  246 (312)
Q Consensus       227 -~~-------------------------~--~-----~~~---------------------------~~~~~~~~~~~~~  246 (312)
                       +.                         .  +     ..|                           .++...+....+.
T Consensus       248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs  327 (447)
T KOG4497|consen  248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS  327 (447)
T ss_pred             hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence             00                         0  0     000                           0011112223334


Q ss_pred             cCCcEEEEeecC--CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          247 TNGKYIVSGSED--NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       247 ~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .++.+++|-.++  +.+-+||++..++...+. ...+|....|+|....|+...  |..++.+|-+
T Consensus       328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct--g~srLY~W~p  390 (447)
T KOG4497|consen  328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT--GKSRLYFWAP  390 (447)
T ss_pred             CCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc--CCceEEEEcC
Confidence            566677775443  679999998877655543 356799999999998888777  5567888854

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=5.3e-16  Score=138.79  Aligned_cols=255  Identities=16%  Similarity=0.233  Sum_probs=169.5

Q ss_pred             eceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCCcc-------eEEEeeeccCCEEEEEEccCCCeEEEEcC
Q 021459           13 RHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASSLA-------LVHRFVGHSEGISDLAWSSDSHYICSASD   84 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   84 (312)
                      .....+..|...|..++.+++ +.+++||+.||+|++|+.....       ...++.--...+..+...+.++.+|+++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            345567778999999988764 5999999999999999976421       11122223567888999999999999999


Q ss_pred             CCeEEEEeCCCC--ce----eee--eeecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCe
Q 021459           85 DRTLRIWDARTP--FD----CLK--TLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPV  152 (312)
Q Consensus        85 d~~v~~wd~~~~--~~----~~~--~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v  152 (312)
                      ||.|++.+++..  ..    +..  ..++....+..-+|..  ....++.+..-+.|..||++.......++  ...+.|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999999988641  11    111  1111222233333322  22367777888899999998765443332  234679


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC---CCCEEEEEe--cCCeEEEEEcCCCcEE
Q 021459          153 TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP---NGKFILVGT--LDSTLKLWNYSAGKFL  227 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~--~d~~i~v~d~~~~~~~  227 (312)
                      ++++.+|.+.+++.|+..|.+.+||+|=+..+.+........+..+..+|   .....++++  ..+.|.+|++.+|..-
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            99999999999999999999999999977766655443334444444443   334454443  5688999999988654


Q ss_pred             EEEEccCC----------------ceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          228 KIYTGHTN----------------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       228 ~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ..+....+                ...+...+.....+.++.+|+.|+.|+.||..
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            44332200                00111112222346689999999999999863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=8.4e-15  Score=115.45  Aligned_cols=185  Identities=15%  Similarity=0.289  Sum_probs=139.2

Q ss_pred             CCEEEEEeCC--CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee---cccc
Q 021459           34 GTLLASASLD--KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSD  108 (312)
Q Consensus        34 ~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~~  108 (312)
                      ..++|..+.+  +.+++.++.....+-.+. ....|.++.++  .+.|+++-.+ .|+|||+.+. +.+.++.   .+..
T Consensus        56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~  130 (391)
T KOG2110|consen   56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPK  130 (391)
T ss_pred             cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccc-eeehhhhccCCCcc
Confidence            3445544443  457888877666555443 45678788775  4466666554 4999999874 4444432   3444


Q ss_pred             cEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe-EEEEeCCCCceee
Q 021459          109 FVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT-CKIWDAGEGACLK  185 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~  185 (312)
                      .+.++++++.+.+++--+  ..|.|.+||+.+-+....+.+|+.++.+++|+++|.++|+++..|+ |+++.+.+++.+.
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            566666666666777543  3588999999999999999999999999999999999999999997 6899999999988


Q ss_pred             EcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          186 TLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       186 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      ++.... ...+..++|+|++++|++.+..++|++|-+..
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            875433 23466789999999999999999999998753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.1e-16  Score=123.14  Aligned_cols=185  Identities=21%  Similarity=0.365  Sum_probs=135.6

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCce-
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFD-   98 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~-   98 (312)
                      +..+..++|++.-.-+|.+..|-.|++|+-+.. ....++. ....|++++|-|. +..|+.|+..| |++|....... 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            346778999997777899999999999987763 2233332 3467999999995 45777777654 79997542111 


Q ss_pred             ------------eeeeeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459           99 ------------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        99 ------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                                  .+...++| .+|.++.|++|+..+++++.+ ..|.+||..+++.+.........+.-+.|+||+.+++
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence                        11223345 579999999999999998875 6799999999987765544455688999999999999


Q ss_pred             EeeCCCeEEEEeCCC-CceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          166 SGSHDGTCKIWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      +++-|+..++|+..+ ....+-...  ...+...+|+|+|.+|+...
T Consensus       255 aAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             Eecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEE
Confidence            999999999995433 333333332  23677788999999877654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.5e-16  Score=126.28  Aligned_cols=250  Identities=14%  Similarity=0.239  Sum_probs=173.0

Q ss_pred             EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-----ceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP-----FDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      .+.+|.+.|+.+.|+.++++|++|++|..+++|++...     .+.+... ..|...|+|++|+..+.++++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            35679999999999999999999999999999987531     1223322 34668999999999999999999999999


Q ss_pred             EEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEc-ccCCCCcEEEEEECCCC-CEE
Q 021459          133 IWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTL-IDDKDPAVSFAKFSPNG-KFI  207 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~l  207 (312)
                      +.|+++.+.+.++..  ..+.|+.+..+|-.+.|++.+.++.|.+||.+..+. ...+ ..........+-|.|-. .+|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            999999988776642  234899999999999999999999999999987652 2212 22233445566788865 467


Q ss_pred             EEEecCCeEEEEEcCCCcE-EEEE---EccCC-ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc---
Q 021459          208 LVGTLDSTLKLWNYSAGKF-LKIY---TGHTN-KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT---  279 (312)
Q Consensus       208 ~~~~~d~~i~v~d~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---  279 (312)
                      ++.+..+-+-+||.+.... +..+   .+.+. ....+.+.| .++|..+.+--....-.+||+-+..+......|.   
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~-~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW-SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheee-CCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            7778888899999876542 1111   11111 111233333 4567777665555566678876644432222232   


Q ss_pred             ----cceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          280 ----DSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       280 ----~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                          ..+.+++|--+ ..+++|+.+  =.|.+|.+-|
T Consensus       290 Y~N~~T~KS~~F~~D-~~v~tGSD~--~~i~~WklP~  323 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDD-YTVATGSDH--WGIHIWKLPR  323 (609)
T ss_pred             ceeeeeeeeeeeecc-eeeeccCcc--cceEEEecCC
Confidence                24556666544 457777744  5899998643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=5.8e-14  Score=117.47  Aligned_cols=272  Identities=15%  Similarity=0.214  Sum_probs=174.4

Q ss_pred             EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe
Q 021459           37 LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN  116 (312)
Q Consensus        37 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~  116 (312)
                      +++-..++.|.+.|..+.+.+.++......-..+.++|||+++++++.|+.|.++|+.+. +.+..++.. .....++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G-~~~~~i~~s   86 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVG-GNPRGIAVS   86 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-S-SEEEEEEE-
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecC-CCcceEEEc
Confidence            345667899999999999999988765443345789999999999999999999999885 456666543 345779999


Q ss_pred             cCCCEEEEee-cCCcEEEEEcCCCeEEEEeeec-------CcCeEEEEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEc
Q 021459          117 PQSNLIVSGS-FDESIRIWEVKTGKCTRVIRAH-------SMPVTSVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       117 ~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~  187 (312)
                      +||++++++. ..+.+.++|.++.+.++.+...       ...+..+..+|....++..-. .+.|.+.|......+...
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            9999988775 5789999999999888776543       234667777888876665554 478888787664433211


Q ss_pred             ccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEc-------------cCCc--eeE-----------E
Q 021459          188 IDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTG-------------HTNK--KYC-----------I  240 (312)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~-------------~~~~--~~~-----------~  240 (312)
                      ............|+|++++++++ ..++.|-++|..+++.+..+..             |...  .+.           +
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i  246 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI  246 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence            11223345567799999987665 5567888999887765543211             0000  000           0


Q ss_pred             -------------------------EEEEEccCCcEEEEe----ecCCeEEEEECCchheeecccCCc-cceEEEEEcCC
Q 021459          241 -------------------------TSTFSVTNGKYIVSG----SEDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPT  290 (312)
Q Consensus       241 -------------------------~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~  290 (312)
                                               ......|+++++.+.    .+++.|.++|.++.+....+.... ..+..+.|+++
T Consensus       247 g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  247 GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred             cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence                                     012234667777766    556899999999987777765322 35899999999


Q ss_pred             CceEEEeeecCCeeEEEEee
Q 021459          291 ENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       291 ~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |..+-.+..++++.|.++|.
T Consensus       327 G~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEET
T ss_pred             CCEEEEEEecCCCEEEEEEC
Confidence            99888888887778999875

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.7e-17  Score=134.77  Aligned_cols=166  Identities=25%  Similarity=0.434  Sum_probs=129.8

Q ss_pred             eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEE
Q 021459           56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRI  133 (312)
Q Consensus        56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~  133 (312)
                      +...+.||++.|++++|+.+|.+|++|++|-.+.|||....+.....-.||...|+++.|-|.  .+.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345678999999999999999999999999999999987544434445789999999999984  468999999999999


Q ss_pred             EEcCC----------CeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeE-------cccC--CCC
Q 021459          134 WEVKT----------GKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKT-------LIDD--KDP  193 (312)
Q Consensus       134 wd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~--~~~  193 (312)
                      +|+..          ......+..|...|..++-.|++ ..|.++++||+++-+|+++...-..       +...  .--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99974          23344556788889999999988 7899999999999999987432111       1000  111


Q ss_pred             cEEEEEECCCC-CEEEEEecCCeEEEEEc
Q 021459          194 AVSFAKFSPNG-KFILVGTLDSTLKLWNY  221 (312)
Q Consensus       194 ~~~~~~~~~~~-~~l~~~~~d~~i~v~d~  221 (312)
                      ...++.++|.. .+|++|+.|-..++||.
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            24456677754 58899999999999994

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1e-15  Score=126.91  Aligned_cols=273  Identities=19%  Similarity=0.256  Sum_probs=189.6

Q ss_pred             ccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeecc--CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           20 AHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHS--EGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      .|....+.+..+|||+++ |||-..-.|++||+.+..+.  +.-|.  ..|.-.-.+.|-..++.-..|+.|.+-.....
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            477788899999999975 66777789999999876653  34443  33443344445455555667777766533211


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW  176 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (312)
                      ...++    -...-..++++.-..-|+.++....|+-++++.|+.+..+......++++..++-..+|++|+.+|.|..|
T Consensus       127 hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  127 HYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             eeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence            11111    11233456666544445666666779999999999988888777889999999988899999999999999


Q ss_pred             eCCCCceeeEccc----------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          177 DAGEGACLKTLID----------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       177 d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      |.+.......+..          ...+.++.+.|+.+|-.+++|+.+|.+.|||++..+.+.+- .|..........+..
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQD  281 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccc
Confidence            9997665443321          12345888999999999999999999999999988765442 233222222222222


Q ss_pred             c-CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          247 T-NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       247 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      . ++..+++. +...++|||-.++.....+.. ...++.+++-|+...+.+|-.++
T Consensus       282 ~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  282 TDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             cCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCC
Confidence            2 23455554 567899999999888777764 44599999999999998886544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=2.8e-16  Score=129.29  Aligned_cols=257  Identities=16%  Similarity=0.226  Sum_probs=167.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEE-eCCCcceEEEeeeccCCE-EEEEEc-------cCCCeEEEEcCCCeEEEE
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIW-SASSLALVHRFVGHSEGI-SDLAWS-------SDSHYICSASDDRTLRIW   91 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw-~~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~l~~~~~d~~v~~w   91 (312)
                      |...|.|+.|+.....+.+++. ..+.+| ++.+... ..+.-...-| +.+-.-       .....++.++.||.+.+.
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cceeEEeecccccceEEEeccC-ceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            5666778999887777766554 455555 4433211 1111111111 111111       123467888999999888


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      +-..  +.-+....|.+.+.|-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|++|.|+.+-++-+.. +
T Consensus        91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~  166 (737)
T KOG1524|consen   91 NKSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G  166 (737)
T ss_pred             cccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence            6432  34456778999999999999999999999999999998 445433344445678999999998876554433 3


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .+.+=-+.-...+-+ ...++..+-.+.|++..+.+++|+.|-..++||.... .+..-   ....+.+++..+.|+ +.
T Consensus       167 h~~IKpL~~n~k~i~-WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S---~~~ey~ITSva~npd-~~  240 (737)
T KOG1524|consen  167 HISIKPLAANSKIIR-WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTS---AAEEYAITSVAFNPE-KD  240 (737)
T ss_pred             eEEEeecccccceeE-EeccCcEEEEeecCccccceeecCCceeEEeecccCc-ccccC---Chhccceeeeeeccc-cc
Confidence            444433333322222 2456788889999999999999999999999997543 33222   223345666666666 55


Q ss_pred             EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      ++.++.+ +++           .-+...+.|..++|+|||.+++.|...|
T Consensus       241 ~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  241 YLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCc
Confidence            5555432 232           1123467899999999999999887544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=7.4e-15  Score=126.25  Aligned_cols=234  Identities=13%  Similarity=0.121  Sum_probs=152.7

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL  121 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (312)
                      .|.++|....... .+..+...+.+.+|+|||+.|+..+.   +..+.+|++.++..  ..+....+.+..+.|+||++.
T Consensus       180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCE
Confidence            6888887765442 34446678899999999998886542   35789999876532  122222233456899999998


Q ss_pred             EEEe-ecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC-Ce--EEEEeCCCCceeeEcccCCCCcE
Q 021459          122 IVSG-SFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD-GT--CKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       122 l~s~-~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      |+.. +.+|  .|++||+.+++..+.. .+...+....|+|||+.++..+.+ +.  |..+|+.++... .+.. .....
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~  333 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQN  333 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCc
Confidence            7754 4444  4889999888654433 334456788999999988766654 44  444566655432 2221 22233


Q ss_pred             EEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe---EEEEECCch
Q 021459          196 SFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC---VYVWDLQQK  269 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~  269 (312)
                      ....|+|+|++++..+.+   ..|.+||+.+++... +..... .  ... .+.++|+.|+..+.++.   +.++++. +
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~-~--~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~-G  407 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFL-D--ETP-SIAPNGTMVIYSSSQGMGSVLNLVSTD-G  407 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCC-C--CCc-eECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence            456799999999886543   358889998776433 322111 1  111 23478999988887764   6677774 4


Q ss_pred             heeecccCCccceEEEEEcCC
Q 021459          270 TMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       270 ~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      .....+.+|.+.+...+|+|-
T Consensus       408 ~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCeEECccCCCCcCCcccCCC
Confidence            455667778888899999884

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.6e-14  Score=113.94  Aligned_cols=234  Identities=15%  Similarity=0.230  Sum_probs=165.0

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCT  142 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~  142 (312)
                      ..+..+.|+.+...|..|+.||. ++|....-.+.- ........|.-+=|+.  .+++..+.+  ..+++++++.+..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~-~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF-SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhh-cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            45667779999999999998884 777665422211 1111122333333443  455544443  45889998877666


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC--CCCEEEEE--ecCCeEEE
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP--NGKFILVG--TLDSTLKL  218 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~d~~i~v  218 (312)
                      ..+. ...+|.++.++.+  .|+++-.+ .|.|||+++.+.+.++..........+++++  .+.+|+.-  ...|.|.+
T Consensus        82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            5543 3457888888643  56666555 4999999999988887655222333344555  44588874  34689999


Q ss_pred             EEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe-EEEEECCchheeecccCCc--cceEEEEEcCCCceEE
Q 021459          219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC-VYVWDLQQKTMIQKLDGHT--DSVISVTCHPTENKIA  295 (312)
Q Consensus       219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~l~~~p~~~~l~  295 (312)
                      ||..+-+.+..+..|.....++   ...++|.+|||+++.|+ |+++.+.+++.+.+++-..  ..|.+|+|+|++++|+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAal---afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAAL---AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EEcccceeeeEEEecCCceeEE---EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            9999999888888888875554   44588999999999997 6899999999988886433  4688999999999999


Q ss_pred             EeeecCCeeEEEEeec
Q 021459          296 SAGLDGDRTVRVWVQD  311 (312)
Q Consensus       296 ~~~~dgd~~v~iw~~~  311 (312)
                      ++|.  ..+|+||.++
T Consensus       235 ~sS~--TeTVHiFKL~  248 (391)
T KOG2110|consen  235 ASSN--TETVHIFKLE  248 (391)
T ss_pred             EecC--CCeEEEEEec
Confidence            8884  4699999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.72  E-value=5.8e-15  Score=114.28  Aligned_cols=234  Identities=19%  Similarity=0.278  Sum_probs=170.6

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC--ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTP--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-  139 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-  139 (312)
                      -..+|++.+|++|++.+|.+.....|.||.....  .+...+++.|+..|..++|+|..+.+++++.|..-++|....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            3578999999999999999999999999986543  3566778889999999999999999999999999999998443 


Q ss_pred             e--EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc---eeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          140 K--CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA---CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       140 ~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      +  ....+..+..+.+++.|+|.++.|++|+....|.+|-.+...   ..+.+.......+..+.|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            2  334556678889999999999999999999999888655322   11222233445688899999999999999999


Q ss_pred             eEEEEEcCCC------------------cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh-eeecc
Q 021459          215 TLKLWNYSAG------------------KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT-MIQKL  275 (312)
Q Consensus       215 ~i~v~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  275 (312)
                      ..|+|...-.                  +.+..+.  ....+.-. ..+.+.|..|+-.+.|..+.+-|..... .++.+
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~-v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~  245 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHG-VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV  245 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceee-eEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence            9999863110                  0001111  11112222 3344678999999999999999886543 34444


Q ss_pred             cCCccceEEEEEcCCCceEEEeeec
Q 021459          276 DGHTDSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       276 ~~h~~~v~~l~~~p~~~~l~~~~~d  300 (312)
                      ..-.-+.+++.|-.+ +.++.+|+|
T Consensus       246 ~~~~lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  246 ATAQLPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             hhccCCceeeEeecC-CceeecCCC
Confidence            333367777777533 455556655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=6e-15  Score=126.89  Aligned_cols=235  Identities=17%  Similarity=0.187  Sum_probs=145.5

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      ..|.++|... .....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++...  .+....+.+...+|+||++
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence            3566777643 3334455677789999999999988877643   35999999875332  2222334566889999998


Q ss_pred             EEE-EeecCCcEEEE--EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCeEEEEeC--CCCceeeEcccCCCCc
Q 021459          121 LIV-SGSFDESIRIW--EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWDA--GEGACLKTLIDDKDPA  194 (312)
Q Consensus       121 ~l~-s~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~  194 (312)
                      .++ +.+.+|...+|  |+..+. ...+..+........|+|||+.++..+. ++...+|.+  .++... .+... ...
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~  329 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSY  329 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCC
Confidence            876 56677776665  455444 3344444444567789999998876554 455666644  444322 22111 122


Q ss_pred             EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC---eEEEEECCc
Q 021459          195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN---CVYVWDLQQ  268 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~  268 (312)
                      .....|+|+|++++..+.++   .|.+||+.+++........ ..   .. ..+.++++.|+..+.++   .+.+.++. 
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~---~~-p~~spdg~~l~~~~~~~g~~~l~~~~~~-  403 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RD---ES-PSFAPNGRYILYATQQGGRSVLAAVSSD-  403 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-Cc---cC-ceECCCCCEEEEEEecCCCEEEEEEECC-
Confidence            23457999999998876554   6999999887654332221 11   11 23346788777665443   35555653 


Q ss_pred             hheeecccCCccceEEEEEcCC
Q 021459          269 KTMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       269 ~~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      +.....+..+.+.+...+|+|-
T Consensus       404 g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        404 GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCceEEeecCCCCCCCCccCCC
Confidence            4444555556667777888874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.2e-15  Score=133.09  Aligned_cols=246  Identities=22%  Similarity=0.341  Sum_probs=162.5

Q ss_pred             cccceEEEEECC--CCCEEEEEeCCCeEEEEeC-CC----cceEEEee---ec----cCCEEEEEEccCCCeEEEEcCCC
Q 021459           21 HSRAVSCVKFSN--DGTLLASASLDKTVIIWSA-SS----LALVHRFV---GH----SEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        21 h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~-~~----~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      ....|+.+.+-.  |..++++|+.||.||||.- ..    .+++..+.   ++    .+.-.-+.|..+..+|+++++-+
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence            345788888865  4568999999999999953 22    22332222   11    11113467887766777777789


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEe-cCCCEEEEeecCCcEEEEEcCCCe---EEEEeeecCcC--eEEEEEccC
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFN-PQSNLIVSGSFDESIRIWEVKTGK---CTRVIRAHSMP--VTSVHFNRD  160 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~--v~~~~~~~~  160 (312)
                      .|+|||......+.....+....+.++.-+ ..|+.+++|-.||.|++||.+...   .+...+.|...  |..+.+.++
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            999999976433222223333445555433 346899999999999999987432   35566778776  999999886


Q ss_pred             CC-EEEEeeCCCeEEEEeCCCCceee--EcccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459          161 GS-LIVSGSHDGTCKIWDAGEGACLK--TLIDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN  235 (312)
Q Consensus       161 ~~-~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  235 (312)
                      |- .+++|+.+|.|++||++......  .+..+.  +...+.+..++....+|+|+. +.|+||++.. +.+..+..+..
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPG 1345 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcc
Confidence            65 49999999999999999742211  111111  234778888999999999988 9999999854 43333322211


Q ss_pred             ----ceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          236 ----KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       236 ----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                          ......+..+.|---++|+|+.|.+|.||....
T Consensus      1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             cccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence                111122223334455789999999999997654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.1e-14  Score=125.73  Aligned_cols=234  Identities=17%  Similarity=0.168  Sum_probs=151.3

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      ..|.+||...... ..+..+...+.+.+|+|||+.|+..+.+   ..|++||+.++..  ..+....+...+++|+||++
T Consensus       184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence            3688888765433 4455677789999999999998887643   4699999976532  22223334455789999998


Q ss_pred             EEE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCe--EEEEeCCCCceeeEcccCCCCc
Q 021459          121 LIV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGT--CKIWDAGEGACLKTLIDDKDPA  194 (312)
Q Consensus       121 ~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~  194 (312)
                      .++ +.+.+|  .|++||+.+++.. .+..+.......+|+|||+.++..+. ++.  +.++|+.+++... +... ...
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~  337 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNY  337 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCC
Confidence            765 445555  5999999887654 34444444567899999998887664 444  6666776655332 2211 122


Q ss_pred             EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec---CCeEEEEECCc
Q 021459          195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE---DNCVYVWDLQQ  268 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~  268 (312)
                      .....|+|+|++++..+.++   .|.+||+.+++......+. ..   ... .+.+++++++..+.   .+.|.++++..
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~---~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD---ESP-SFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC---CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence            33467999999998865443   6999999877654322211 11   111 23478887776554   34677888754


Q ss_pred             hheeecccCCccceEEEEEcC
Q 021459          269 KTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       269 ~~~~~~~~~h~~~v~~l~~~p  289 (312)
                       .....+..+.+.+...+|+|
T Consensus       413 -~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        413 -RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -CceEEcccCCCCCCCCccCC
Confidence             34455555556677778876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=5.9e-16  Score=127.37  Aligned_cols=137  Identities=23%  Similarity=0.432  Sum_probs=110.5

Q ss_pred             ccceEEEEECCCC-CEEEEEeCCCeEEEEeCCC--------------c--------------ceEEEeeeccCCEEEEEE
Q 021459           22 SRAVSCVKFSNDG-TLLASASLDKTVIIWSASS--------------L--------------ALVHRFVGHSEGISDLAW   72 (312)
Q Consensus        22 ~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~--------------~--------------~~~~~~~~~~~~v~~~~~   72 (312)
                      +..|+|++|-|.+ ..++.+-.+|.+.++|...              +              .++.++.--...|+.++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4789999999854 4666677889999996421              0              112222223457889999


Q ss_pred             ccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe
Q 021459           73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV  152 (312)
Q Consensus        73 ~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v  152 (312)
                      +|||++||+.+.||.++|+|..+. +++..++..-+...|++|+|||+++++|++|..|.||.+..++.+..=++|+..|
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV  377 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV  377 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence            999999999999999999998763 4555556666789999999999999999999999999999988888778999999


Q ss_pred             EEEEEcc
Q 021459          153 TSVHFNR  159 (312)
Q Consensus       153 ~~~~~~~  159 (312)
                      ..++|.|
T Consensus       378 s~VaFDp  384 (636)
T KOG2394|consen  378 SVVAFDP  384 (636)
T ss_pred             eeEeecc
Confidence            9999983

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.69  E-value=1.9e-14  Score=112.61  Aligned_cols=282  Identities=23%  Similarity=0.421  Sum_probs=183.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeecc------------CCEEEEEEccCCC--eEEEE
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----LVHRFVGHS------------EGISDLAWSSDSH--YICSA   82 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~   82 (312)
                      .+-|+++.|...|++||||..+|.|.++.-....     ....++.|.            +.|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4678899999999999999999999999544321     122333342            3578899998764  45555


Q ss_pred             cCCCeEEEEeCCCCce----------------------------------eeee-eecccccEEEEEEecCCCEEEEeec
Q 021459           83 SDDRTLRIWDARTPFD----------------------------------CLKT-LRGHSDFVFCVNFNPQSNLIVSGSF  127 (312)
Q Consensus        83 ~~d~~v~~wd~~~~~~----------------------------------~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~  127 (312)
                      ..|++|++|.+.....                                  +.+. -.+|.-.|.+++++.|.+.++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            6899999997642100                                  0000 124667789999999999999864 


Q ss_pred             CCcEEEEEcCCC-eE--EEEeeecC-----cCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCcee--------------
Q 021459          128 DESIRIWEVKTG-KC--TRVIRAHS-----MPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACL--------------  184 (312)
Q Consensus       128 dg~i~~wd~~~~-~~--~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--------------  184 (312)
                      |-.|.+|.++-- ++  +..++.+.     .-|++..|+|. .+.|+-.+..|.|++.|+|....-              
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            667999988532 22  22233332     23788899994 457777888999999999854321              


Q ss_pred             -eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc-CCCcEEEEEEccCCc------------ee-EEEEEEEccCC
Q 021459          185 -KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY-SAGKFLKIYTGHTNK------------KY-CITSTFSVTNG  249 (312)
Q Consensus       185 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~  249 (312)
                       +.+....-..++.+.|+++|+++++-.. -+|++||+ ...+.+..++.|...            .+ ...++ +..++
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~  341 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS-WSGND  341 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE-EcCCc
Confidence             1111111234667899999999987543 58999999 445666666655321            11 11222 33566


Q ss_pred             cEEEEeecCCeEEEEECCchhee-------------e---cc----c-C-------------CccceEEEEEcCCCceEE
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMI-------------Q---KL----D-G-------------HTDSVISVTCHPTENKIA  295 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~-------------~---~~----~-~-------------h~~~v~~l~~~p~~~~l~  295 (312)
                      ..++||+.+...+++++..+...             .   .+    . +             ....+...+|||.++.+|
T Consensus       342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia  421 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIA  421 (433)
T ss_pred             ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceee
Confidence            79999999999999995322110             0   00    0 0             112456678999999998


Q ss_pred             EeeecCCeeEEEEe
Q 021459          296 SAGLDGDRTVRVWV  309 (312)
Q Consensus       296 ~~~~dgd~~v~iw~  309 (312)
                      .+..   +.+.|+.
T Consensus       422 ~aat---nnlyif~  432 (433)
T KOG1354|consen  422 VAAT---NNLYIFQ  432 (433)
T ss_pred             eeec---CceEEec
Confidence            8864   3566653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=1.1e-14  Score=111.01  Aligned_cols=152  Identities=19%  Similarity=0.450  Sum_probs=106.8

Q ss_pred             EEEEccCCCeEEEEcC---C-------CeEEEEeCCCCceeeeeeec-ccccEEEEEEecCCCEEEEe--ecCCcEEEEE
Q 021459           69 DLAWSSDSHYICSASD---D-------RTLRIWDARTPFDCLKTLRG-HSDFVFCVNFNPQSNLIVSG--SFDESIRIWE  135 (312)
Q Consensus        69 ~~~~~~~~~~l~~~~~---d-------~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~--~~dg~i~~wd  135 (312)
                      .+.|+++|++|+.-..   |       +...+|-++........+.- ..+.|.+++|+|+++.++..  ..+..|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            5789999987765433   1       23445544322222222221 33569999999999986544  4567899999


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      ++ ++.+..+  +..++..+.|+|+|+++++++.   .|.+.+||.++.+.+....   ...+..+.|+|+|++|++++.
T Consensus        90 ~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   90 VK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             Cc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCCEEEEEEe
Confidence            97 4444444  3557789999999999999874   3679999999877765542   234678899999999999864


Q ss_pred             ------CCeEEEEEcCCCcEE
Q 021459          213 ------DSTLKLWNYSAGKFL  227 (312)
Q Consensus       213 ------d~~i~v~d~~~~~~~  227 (312)
                            |+.++||++. |+.+
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             ccceeccccEEEEEec-CeEe
Confidence                  6788999984 5444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=8.8e-14  Score=108.36  Aligned_cols=271  Identities=14%  Similarity=0.193  Sum_probs=174.2

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceee
Q 021459           23 RAVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      +.|.-+.|..|..+++ .+..++.|.+|++...+...++.....++.+++|+|||+ .|.+..-+-.|.+|.+.+.....
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            5677788988877654 557888999999998888888888888999999999995 55566678899999987743222


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeecC------------------------------------CcEEEEEcCCCeEEEE
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSFD------------------------------------ESIRIWEVKTGKCTRV  144 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------------------------------g~i~~wd~~~~~~~~~  144 (312)
                        ++-....+..++|+||+++.+.++.-                                    ..+.+||.--.-.+..
T Consensus       129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence              22222345677888888776655441                                    1234444221111111


Q ss_pred             eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee---------------------------------------
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK---------------------------------------  185 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------------------  185 (312)
                      +. -...+..++|+|.++++++|+.|+.+++.+--+.+...                                       
T Consensus       207 Ye-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  207 YE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             ee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence            11 12457889999999999999999988875421110000                                       


Q ss_pred             ---------------------Ecc-----cCCCCcEEEEEECCCCCEEEEEecC--CeEEEEEcCCCcEEEEEEccCCce
Q 021459          186 ---------------------TLI-----DDKDPAVSFAKFSPNGKFILVGTLD--STLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       186 ---------------------~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                                           ...     .+....+..++|++|..++++-...  +.+-+||++..+...++....   
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~---  362 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH---  362 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---
Confidence                                 000     0011224557899999988876433  678999998876544332111   


Q ss_pred             eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                       .+....+.|....|+.+...-++++|-..- .......+-.-.|..+.|+-+|..++..+-|.
T Consensus       363 -piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  363 -PIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             -ceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence             122222334444555566666799998764 33333333446799999999999998887553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.9e-14  Score=122.66  Aligned_cols=200  Identities=23%  Similarity=0.257  Sum_probs=130.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEe
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWD   92 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd   92 (312)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.. .+......+...+|+|||+.|+ +.+.++...+|.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            345677889999999999998876542   45999999887653 3333445566899999998776 566777766665


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEc--CCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEV--KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      +.........+..+........|+||++.++..+. +|...+|.+  .+++.... ...........|+|+|++++..+.
T Consensus       269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEc
Confidence            43211223444445555567889999998776554 456666654  44443222 222223446789999999987665


Q ss_pred             CC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEEc
Q 021459          170 DG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWNY  221 (312)
Q Consensus       170 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d~  221 (312)
                      ++   .|.+||+.+++.. .+...  .......|+|||+.|+..+.++   .+.+.+.
T Consensus       348 ~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCCcEEEEEEECCCCCeE-EccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            54   5899999877643 23221  1224467999999998877554   3444454

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.5e-13  Score=118.75  Aligned_cols=234  Identities=18%  Similarity=0.183  Sum_probs=150.4

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      ..|.++|...... ..+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++..  ..+..+.+.+...+|+||++
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            3678888754433 456667788999999999998887753   46899999977532  33444556677889999998


Q ss_pred             EEE-EeecCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCc
Q 021459          121 LIV-SGSFDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPA  194 (312)
Q Consensus       121 ~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~  194 (312)
                      .++ +.+.++.  |++||+.+++.. .+..+........|+|||+.++..+. ++  .|.++|+..+... .+... ...
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~  335 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGR  335 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCc
Confidence            765 5555554  777898877654 34445555667899999998887663 33  5778887665433 23221 223


Q ss_pred             EEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC------CeEEEEE
Q 021459          195 VSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED------NCVYVWD  265 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd  265 (312)
                      .....|+|+|+.|+....+   ..|.+||+..+.. +.+.... .   .....+.++++.|+..+.+      ..+.++|
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~-~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF-L---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC-C---CCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            4446799999999887543   3688888755443 3332211 1   1112234678887654432      3678888


Q ss_pred             CCchheeecccCCccceEEEEEcCC
Q 021459          266 LQQKTMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       266 ~~~~~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      +..+.. ..+. ....+...+|+|-
T Consensus       411 l~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        411 LTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCce-EEcc-CCCCccCcccCCC
Confidence            865443 3443 2334566677764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=2.5e-14  Score=113.60  Aligned_cols=260  Identities=15%  Similarity=0.242  Sum_probs=171.0

Q ss_pred             ccceEEEEECCCCC--EEEEEeCCCeEEEEeCCCcceEEE------eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           22 SRAVSCVKFSNDGT--LLASASLDKTVIIWSASSLALVHR------FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        22 ~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ...|+.+.|.-+++  .+...+.+..+..+..........      .......|..++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            44667777765443  444444555666655554333222      12223445444432  336778889999999987


Q ss_pred             CCCc---eeeeeeecccccEEEEEEecC-CCEEEEeecC--CcEEEEEcCCCeEEEEeeecC-----------cCeEEEE
Q 021459           94 RTPF---DCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHS-----------MPVTSVH  156 (312)
Q Consensus        94 ~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~-----------~~v~~~~  156 (312)
                      ..+.   ..+..+..+ ..+..+.-.+. ...+++|+..  ..+++||+++.+.+  +.+..           ..++++.
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccce
Confidence            6331   112222222 33445555553 3466778888  78999999987443  33321           2356788


Q ss_pred             EccC--CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EEcc
Q 021459          157 FNRD--GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YTGH  233 (312)
Q Consensus       157 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~  233 (312)
                      |-+.  ...|++++.-+.+++||.+.++.....+.-....++++...|+++++.+|...+.+..||.+.++.+.. +.+-
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            8887  789999999999999999876544333333456788888999999999999999999999999987765 5555


Q ss_pred             CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCC
Q 021459          234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      .+.+..+.   ..+...++++++-|..|+|+|+.+..++...-- ....+++-+.++
T Consensus       290 tGsirsih---~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  290 TGSIRSIH---CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             cCCcceEE---EcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence            55544443   346778999999999999999998766544321 223455555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=5.3e-16  Score=116.93  Aligned_cols=158  Identities=22%  Similarity=0.345  Sum_probs=125.2

Q ss_pred             cccceEEEEECC-CCC--EEEEEeCCCeEEEEeCCCc----------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           21 HSRAVSCVKFSN-DGT--LLASASLDKTVIIWSASSL----------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        21 h~~~v~~~~~s~-~~~--~l~t~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ..+.+.|.++.. ++.  +++.|-++|.+.+||+..+          +....+..|.++|.++.|.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            456777877543 333  4677888999999999886          344455679999999999886655567888888


Q ss_pred             EEEEeCCCCceeee---eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459           88 LRIWDARTPFDCLK---TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI  164 (312)
Q Consensus        88 v~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
                      +..|+++.....+.   ...-..-.+..+..-||++.++++++|+.|++|.-++.+.+..++-|...|++++|+|+.+++
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            89998764321111   111112346667888999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEEeC
Q 021459          165 VSGSHDGTCKIWDA  178 (312)
Q Consensus       165 ~~~~~d~~i~iwd~  178 (312)
                      ++++.|++|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.1e-13  Score=119.02  Aligned_cols=209  Identities=16%  Similarity=0.173  Sum_probs=136.2

Q ss_pred             eecccccceEEEEECCCCCEEEEEe---CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCC--eEEE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASAS---LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDR--TLRI   90 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~v~~   90 (312)
                      .+..+...+...+|||||+.|+..+   .+..+.+|++.+++... +......+..++|+|||+.|+.. +.++  .|++
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            3445667889999999999888654   23578899988775432 22233345578999999988754 4444  5888


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-Cc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-ES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      ||+.++.  ...+..+...+....|+||++.++..+.+ +.  |+++|+.+++.. .+...........|+|||++++..
T Consensus       272 ~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        272 MDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             EECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEE
Confidence            9987643  23333344456788999999988766653 44  445566666543 333333445678899999998876


Q ss_pred             eCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe---EEEEEcCCCcEEEEEEcc
Q 021459          168 SHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST---LKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       168 ~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~~~~  233 (312)
                      +.+   ..+.+||+.++... .+...  .......|+|||++|+.++.++.   +.++++. +.....+..+
T Consensus       349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~  416 (429)
T PRK03629        349 SSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT  416 (429)
T ss_pred             EccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC
Confidence            543   35888998877533 22221  11234569999999999887764   6677763 4433444333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=2.4e-14  Score=109.11  Aligned_cols=151  Identities=19%  Similarity=0.356  Sum_probs=105.9

Q ss_pred             EEEECCCCCEEEEEeC---C-------CeEEEEeCCC-cceEEEeee-ccCCEEEEEEccCCCeEEEE--cCCCeEEEEe
Q 021459           27 CVKFSNDGTLLASASL---D-------KTVIIWSASS-LALVHRFVG-HSEGISDLAWSSDSHYICSA--SDDRTLRIWD   92 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~---d-------~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~v~~wd   92 (312)
                      .+.|+|+|++|+.-..   |       +...+|.+.. ......+.- ..++|.+++|+|+|+.++++  ..++.+.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4789999987654322   1       2344454421 222333332 34569999999999987654  4567999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecC---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ++.  +.+..+.  ...+..+.|+|+|++++.++.+   |.|.+||.++.+.+...+ | ..+..++|+|+|+++++++.
T Consensus        90 ~~~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   90 VKG--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             Ccc--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            963  3344443  4567789999999999998754   679999999888776654 2 34789999999999998874


Q ss_pred             ------CCeEEEEeCCCCcee
Q 021459          170 ------DGTCKIWDAGEGACL  184 (312)
Q Consensus       170 ------d~~i~iwd~~~~~~~  184 (312)
                            |+.++||+.. |+.+
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             ccceeccccEEEEEec-CeEe
Confidence                  6778999874 4443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.2e-13  Score=104.66  Aligned_cols=177  Identities=19%  Similarity=0.335  Sum_probs=130.8

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc--cccEEEEEEecCCCE
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH--SDFVFCVNFNPQSNL  121 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~  121 (312)
                      ..+.|||-....++..+. ...+|.++.+.++  .|++. .++.|++|...+..+.+..+.-.  .....+++-..+...
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            479999966566655544 5678999998765  45544 46789999876444444433221  222333333333345


Q ss_pred             EEEeec-CCcEEEEEcCCCeE--EEEeeecCcCeEEEEEccCCCEEEEeeCCCe-EEEEeCCCCceeeEcccC-CCCcEE
Q 021459          122 IVSGSF-DESIRIWEVKTGKC--TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT-CKIWDAGEGACLKTLIDD-KDPAVS  196 (312)
Q Consensus       122 l~s~~~-dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~  196 (312)
                      |+.-+. -|.|++-|+...+.  ...+.+|...|.|++++.+|..+|+++..|+ |+|||..++..+.++... ....+.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            555443 48999999976655  4678899999999999999999999999997 789999999988877543 345688


Q ss_pred             EEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          197 FAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       197 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      .++|+|++.+|++++..|+++||.++..
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            8999999999999999999999998754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=5.2e-14  Score=126.34  Aligned_cols=257  Identities=20%  Similarity=0.215  Sum_probs=166.3

Q ss_pred             cceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCc------eeeeeeecccccEEEEEEecCCCEEEEee
Q 021459           54 LALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPF------DCLKTLRGHSDFVFCVNFNPQSNLIVSGS  126 (312)
Q Consensus        54 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  126 (312)
                      |.++..+..|...|..++.+++. .++++|+.||+|++||.+...      +...++......+.++..-+.++.++.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            55667777889999999988764 899999999999999975421      11122222345677888888899999999


Q ss_pred             cCCcEEEEEcCC--CeE-----EEEeeecC-cC-eEEEEEcc-CCC-EEEEeeCCCeEEEEeCCCCceeeEccc-CCCCc
Q 021459          127 FDESIRIWEVKT--GKC-----TRVIRAHS-MP-VTSVHFNR-DGS-LIVSGSHDGTCKIWDAGEGACLKTLID-DKDPA  194 (312)
Q Consensus       127 ~dg~i~~wd~~~--~~~-----~~~~~~~~-~~-v~~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~  194 (312)
                      .||.|.+.++..  .+.     .+....+. +. +..-++.. .+. .++.+...+.|..||++.....-+... ...+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            999999998865  211     11111121 22 33333333 233 677888889999999987554333221 12356


Q ss_pred             EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-ceeEEEEEEEccCCcEEEE-ee-cCCeEEEEECCchhe
Q 021459          195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-KKYCITSTFSVTNGKYIVS-GS-EDNCVYVWDLQQKTM  271 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~-~dg~i~iwd~~~~~~  271 (312)
                      ++.++.+|.+.++++|+..|.+-+||++-+..+..+..... ...-+..+...+.....++ ++ ..+.|.+|++.++..
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            88888999999999999999999999998887766543222 2222333333343344444 44 688999999977643


Q ss_pred             eecccC-------------------CccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          272 IQKLDG-------------------HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       272 ~~~~~~-------------------h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      -..+..                   +.-......+-..+..+.++|.|  ..||.||..+
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd--~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD--MKIRKWDPTR 1335 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc--cceeeccCCC
Confidence            322211                   11112222333334577788754  5899999743

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=1.2e-12  Score=101.62  Aligned_cols=236  Identities=17%  Similarity=0.261  Sum_probs=154.0

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCC------CeEEEEeCCCCce
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDD------RTLRIWDARTPFD   98 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------~~v~~wd~~~~~~   98 (312)
                      .+++|..|..-++.|..+| .++|+.+..+.....+-+.+++.-+..--..++|+ .|+.+      ..|.|||-.. ..
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-~~   86 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-ER   86 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-Cc
Confidence            3489999988888876665 89999887554333333333321111111233444 34333      4799999433 34


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEEeeecCc--CeEEEEEccCCCEEEE-eeCCCeEE
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRVIRAHSM--PVTSVHFNRDGSLIVS-GSHDGTCK  174 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d~~i~  174 (312)
                      ++..+. -..+|.++.+.++  .+++. .++.|++|... +.+.++.+.....  ...++.-+.+..+|+. |-.-|.|+
T Consensus        87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            454443 4567889988875  34443 46689999887 4455555543322  2333332223334443 55679999


Q ss_pred             EEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCe-EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          175 IWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDST-LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       175 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      +-|+..... ...+...++..+.+++.+.+|..+|+++..|+ |||||..+|+.+..+........ +-.....+++.+|
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~-iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD-IYCIAFSPNSSWL  241 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe-EEEEEeCCCccEE
Confidence            999886554 22445667888999999999999999999997 69999999999887765444322 2223345789999


Q ss_pred             EEeecCCeEEEEECCc
Q 021459          253 VSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~  268 (312)
                      ++.|+.|+|++|.++.
T Consensus       242 avsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCeEEEEEeec
Confidence            9999999999998854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.7e-14  Score=120.60  Aligned_cols=204  Identities=15%  Similarity=0.113  Sum_probs=140.1

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeC---CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCe--EE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASL---DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRT--LR   89 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~   89 (312)
                      +.+..|...+...+|+|||+.|+..+.   +..|.+|++.+++.. .+..+.+.+...+|+|||+.|+ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            456678889999999999998887653   468999999887653 4455666778899999998775 4555554  77


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +||+.++.  ...+..+........|+||++.++..+. +|  .|+++|+..++... +..+...+....|+|+|+.++.
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~  350 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAF  350 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEE
Confidence            77887642  3445555555677899999998877653 33  58888887665433 3333445667889999999887


Q ss_pred             eeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC------CeEEEEEcCCCcE
Q 021459          167 GSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD------STLKLWNYSAGKF  226 (312)
Q Consensus       167 ~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~  226 (312)
                      ...+   ..|.+||+..+.. ..+..  ........|+|||+.|+..+.+      ..++++|+..+..
T Consensus       351 ~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        351 TKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            6543   3578888755432 22222  1234456799999998876543      2577777755443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.3e-13  Score=118.97  Aligned_cols=201  Identities=18%  Similarity=0.188  Sum_probs=135.3

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCC--eEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDR--TLR   89 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~   89 (312)
                      +.+..|...+...+|+|||+.|+..+.+   ..|.+|++.+++.. .+.........++|+|+|+.|+ +.+.++  .|+
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3455677789999999999998887643   46999999877653 2333344455789999998775 445555  589


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +||+.++.  ...+..+.......+|+||++.++..+. +|.  |+++|+.+++.... ..+.......+|+|+|+.++.
T Consensus       276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~  352 (433)
T PRK04922        276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKIAM  352 (433)
T ss_pred             EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEE
Confidence            99987653  3344445445567899999998876653 444  66667776654332 223333456899999999887


Q ss_pred             eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCC
Q 021459          167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSA  223 (312)
Q Consensus       167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~  223 (312)
                      .+.++   .|.+||+.+++.. .+...  .......|+|||++++..+.+   +.|.+++...
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            65443   5899998776543 33221  122345799999988877653   3577777744

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=6.9e-14  Score=111.11  Aligned_cols=206  Identities=12%  Similarity=0.230  Sum_probs=155.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEccCC-CeEEEEcCC--CeEE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSSDS-HYICSASDD--RTLR   89 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--~~v~   89 (312)
                      +...-.++|..++..  ...|++|-.+|.+.+|....+.    .+..+..+ .++..+.-++.. .++++|+..  ..+.
T Consensus       100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk  176 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK  176 (412)
T ss_pred             ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence            344455666666543  3457788889999999887332    22333333 456667777654 456668888  7899


Q ss_pred             EEeCCCCceeeeeeec---------ccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEE
Q 021459           90 IWDARTPFDCLKTLRG---------HSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHF  157 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~  157 (312)
                      +||++.. +.+..-+.         -.-.+..+.|-+.  ...|++++.-+.+++||++.++. +..+..-..+++++..
T Consensus       177 iwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  177 IWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             eeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence            9999875 32222111         1123567788876  78999999999999999987754 4455556778999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      .|.++++++|..-+.+..||++.+...........+.++.+..+|..+++++++.|..|||+|.++.+.
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            999999999999999999999999888776666677889999999999999999999999999988544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=1.7e-14  Score=118.88  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=123.5

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcceEE----EeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCc---------
Q 021459           32 NDGTLLASASLDKTVIIWSASSLALVH----RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPF---------   97 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~---------   97 (312)
                      |++--++.|-..|.+.+.+....+...    ...-.+..|+++.|-|- ...++.+-.+|.+++||.+...         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567777777888877665422111    00112468999999984 4466667789999999763210         


Q ss_pred             -------e-----------eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459           98 -------D-----------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        98 -------~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
                             .           .+..+.--.+.|...+|+||+++|++.+.||.++|||..+.+.+..++.--....|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                   0           0001111124577889999999999999999999999998877666655556789999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP  202 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
                      ||+++++|++|.-|.+|.+...+.+..-.+ +...+..++|+|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccc-cccceeeEeecc
Confidence            999999999999999999998887766543 567788899987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=2.1e-11  Score=102.19  Aligned_cols=256  Identities=19%  Similarity=0.218  Sum_probs=155.8

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDAR   94 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~   94 (312)
                      .++......-..+.|+|||++++.++.||.|.++|+.+.+.+.++..- .....+++++||++++++. .++.+.++|.+
T Consensus        30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            344433333344789999999999999999999999999998888753 4467899999999998775 57899999988


Q ss_pred             CCceeeeeeecc-------cccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEE
Q 021459           95 TPFDCLKTLRGH-------SDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        95 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      +. +.++.+...       ...+..+..+|....++..-. .+.|.+-|....+.+.. ............|+|++++++
T Consensus       109 tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  109 TL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             T---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             cc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence            74 455554322       235667777787775555544 47787778766543322 222334567889999999876


Q ss_pred             Ee-eCCCeEEEEeCCCCceeeEcccC------------------------------------------------------
Q 021459          166 SG-SHDGTCKIWDAGEGACLKTLIDD------------------------------------------------------  190 (312)
Q Consensus       166 ~~-~~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------------  190 (312)
                      ++ ..++.+-++|..+++....+...                                                      
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~  267 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT  267 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred             ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence            64 45567878887665433221000                                                      


Q ss_pred             CCCcEEEEEECCCCCEEEEE----ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE-EEee-cCCeEEEE
Q 021459          191 KDPAVSFAKFSPNGKFILVG----TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI-VSGS-EDNCVYVW  264 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~dg~i~iw  264 (312)
                      .... .++..+|+++++.+.    ...+.|.++|.++.+.+..+...... ..+...+. ++|+.+ ++.- .+|.|.+|
T Consensus       268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~-~~~h~ef~-~dG~~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK-RVVHMEFN-PDGKEVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE--TTSSEEEEEEE--TTEEEEE
T ss_pred             CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC-cEeccEEC-CCCCEEEEEEecCCCEEEEE
Confidence            0011 234578999999987    44579999999888766655432221 13344444 566643 4443 44489999


Q ss_pred             ECCchheeeccc
Q 021459          265 DLQQKTMIQKLD  276 (312)
Q Consensus       265 d~~~~~~~~~~~  276 (312)
                      |..+.+...++.
T Consensus       345 D~~Tl~~~~~i~  356 (369)
T PF02239_consen  345 DAKTLKEKKRIP  356 (369)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCcEEEEEEE
Confidence            999988887765

...

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=4e-15  Score=120.50  Aligned_cols=232  Identities=17%  Similarity=0.260  Sum_probs=175.6

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      ..+-+.+.++.+|++|+.|+..|.|-.+|..+. .....+ .-...|.++.|-.+..++++ .....+++|| +.|..+.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei-~v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD-~~GtElH  204 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEI-NVMETVRDVTFLHNEQFFAV-AQKKYVYVYD-NNGTELH  204 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccc-eeeeee-ehhhhhhhhhhhcchHHHHh-hhhceEEEec-CCCcEEe
Confidence            345577899999999999999999999998874 322222 23356777888666555555 4677899999 5577777


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      .++.| ..|..+.|-|.--+|++++..|.++.-|+..|+.+..+... ...+..+.-.|-...+-+|...|+|.+|....
T Consensus       205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            77655 46889999999989999999999999999999988776543 34456667788888888999999999999888


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCe
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR  303 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~  303 (312)
                      .+.+..+..|......+.   ..++|.+++|.+.|..++|||+++...+..+.. ..+...+++|..| .||.+-  | .
T Consensus       283 kePLvKiLcH~g~V~siA---v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~--G-~  354 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIA---VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSY--G-D  354 (545)
T ss_pred             cchHHHHHhcCCCcceEE---ECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeec--C-C
Confidence            877666666777655543   357899999999999999999988765555443 3456788888765 454444  2 2


Q ss_pred             eEEEEe
Q 021459          304 TVRVWV  309 (312)
Q Consensus       304 ~v~iw~  309 (312)
                      .|-||.
T Consensus       355 ~v~iw~  360 (545)
T KOG1272|consen  355 HVQIWK  360 (545)
T ss_pred             eeeeeh
Confidence            678884

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=3.2e-12  Score=100.95  Aligned_cols=243  Identities=17%  Similarity=0.249  Sum_probs=151.3

Q ss_pred             cccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCc-c-------------eEEEeeeccCCEEEEEEccCCCeEEEEcC-
Q 021459           21 HSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSL-A-------------LVHRFVGHSEGISDLAWSSDSHYICSASD-   84 (312)
Q Consensus        21 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~-~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-   84 (312)
                      -...|+|++|-|-+ ..|+.|... -|.+|..... .             .+.+..+| ..|+++.|.+||..+++++. 
T Consensus       139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            35679999999954 467777664 5899975421 1             11222344 57999999999999998875 


Q ss_pred             CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459           85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI  164 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
                      |..|.+||+.++...... ....+.+.-+.|+||+.+++++.-|+..++|+............-...|....|+|+|+++
T Consensus       217 sssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             cceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence            578999999875432222 2234567789999999999999999999999655443322222334589999999999876


Q ss_pred             EE-eeCCCeEEE--EeCCCCcee-----e--Ecc---------cC---CCCcEEEEEECCCCCEEEEEecCC--------
Q 021459          165 VS-GSHDGTCKI--WDAGEGACL-----K--TLI---------DD---KDPAVSFAKFSPNGKFILVGTLDS--------  214 (312)
Q Consensus       165 ~~-~~~d~~i~i--wd~~~~~~~-----~--~~~---------~~---~~~~~~~~~~~~~~~~l~~~~~d~--------  214 (312)
                      +- ++..-.+.-  ++-+.....     +  .+.         ..   -.+....++|+|.|.+|++.-..+        
T Consensus       296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~  375 (445)
T KOG2139|consen  296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL  375 (445)
T ss_pred             EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence            54 333322221  111111000     0  000         00   023456788999999999875433        


Q ss_pred             eEEEEEcCCCcEEEEE-EccC--CceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          215 TLKLWNYSAGKFLKIY-TGHT--NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .|.+||.+..-.+... -+..  .....+...+...++.+|..+=..|.+.-|++
T Consensus       376 ~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  376 HISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             hhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            3566776544332221 1111  11233444445566778888888888887776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.8e-12  Score=108.62  Aligned_cols=234  Identities=13%  Similarity=0.150  Sum_probs=144.6

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL  121 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (312)
                      .|.++|...... ..+..+...+...+|+|||+.|+..+.+   ..|.+||+.++..  +.+....+.+...+|+||++.
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            466777765443 4455567788999999999988776543   3688899876532  222223334556899999998


Q ss_pred             EE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCcE
Q 021459          122 IV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       122 l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      ++ +.+.+|  .|++||+.+++... +..+........|+|||+.++..+. ++  .|.++|+.+++... +... ....
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~  333 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYN  333 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCc
Confidence            76 444454  58888998876543 3334444566789999998776553 33  57777877665432 2111 1222


Q ss_pred             EEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---CeEEEEECCch
Q 021459          196 SFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---NCVYVWDLQQK  269 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~  269 (312)
                      ....|+|+|++++....+ +  .|.++|+.+++..........    .... +.++|+.++..+.+   ..|.+.++...
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~----~~p~-~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLD----ESPS-VAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCC----CCce-ECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            345799999999887643 2  588899887764332221111    1112 34678877665433   34666777433


Q ss_pred             heeecccCCccceEEEEEcCC
Q 021459          270 TMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       270 ~~~~~~~~h~~~v~~l~~~p~  290 (312)
                       ....+..+.+.+...+|+|-
T Consensus       409 -~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        409 -VRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             -ceEECcCCCCCcCCCccCCC
Confidence             33344444556667777764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=5.2e-13  Score=104.62  Aligned_cols=212  Identities=17%  Similarity=0.239  Sum_probs=148.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe-CCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS-ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ..++.++||.+.|+....-|..+-+++.+.|.++|||- ...++....+. .-+.+++++.+.++...|+.|-..|++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            45667899999999999999888999999999999994 33344332222 23567889999999999999999999988


Q ss_pred             EeCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc-------------------------------
Q 021459           91 WDARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV-------------------------------  136 (312)
Q Consensus        91 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~-------------------------------  136 (312)
                      +.+....   ..++....|...+..+-|+...+.+++.+.|..+.---.                               
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS  174 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence            8654321   123444557777777777666666666665543321111                               


Q ss_pred             ----------CCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCE
Q 021459          137 ----------KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF  206 (312)
Q Consensus       137 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
                                ..-..+..+.+|...+.+++|.|....+.+|..|..+.+||+.-.+-..-....+...+..+..-+--+.
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ  254 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence                      1112334567788899999999999999999999999999997654332222222233444444455568


Q ss_pred             EEEEecCCeEEEEEcCCC
Q 021459          207 ILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       207 l~~~~~d~~i~v~d~~~~  224 (312)
                      +.+++.||.|-+||....
T Consensus       255 l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eeeccCCCeEEEEeccce
Confidence            889999999999998654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=7.6e-12  Score=108.08  Aligned_cols=212  Identities=17%  Similarity=0.178  Sum_probs=134.6

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      ..|.++|...... ..+..+...+.+.+|+|+|++|+.+..+   ..|++||+.++..  ..+..+.+.+.+++|+||++
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            3577777754433 4455566678899999999999877644   4799999987532  22333445567789999998


Q ss_pred             EEE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCc
Q 021459          121 LIV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPA  194 (312)
Q Consensus       121 ~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~  194 (312)
                      .|+ +.+.++  .|++||+.+++... +..+........|+|+++.++..+. ++  .|.++|+.+++.. .+.. ....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~  323 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGY  323 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCC
Confidence            765 444444  58889988776433 3334444456789999998876554 33  5777887766533 2221 2223


Q ss_pred             EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC---eEEEEEC
Q 021459          195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN---CVYVWDL  266 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~  266 (312)
                      .....|+|+|++++..+.++   .|.++|+.++... .+......   .. ....++++.|+..+.++   .+.+.+.
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~---~~-p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLD---ES-PSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCC---CC-ceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            44567999999999887775   7889998775543 22221111   11 12346777777665543   3555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=4.4e-10  Score=94.22  Aligned_cols=266  Identities=16%  Similarity=0.266  Sum_probs=164.1

Q ss_pred             CeEEEEeC--CCcceEEEe-eeccCCEEEEEEccCCCeEEEEcC----CCeEEEEeCCCC---ceeeeeeecccccEEEE
Q 021459           44 KTVIIWSA--SSLALVHRF-VGHSEGISDLAWSSDSHYICSASD----DRTLRIWDARTP---FDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        44 ~~i~vw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~wd~~~~---~~~~~~~~~~~~~v~~~  113 (312)
                      +.|.+|.+  .++++...- ..-......++++|++++|.+...    ++.|..|++...   ...+.........-..+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            68888876  444432111 123455677999999999998866    568888887653   12222222122344568


Q ss_pred             EEecCCCEEEEeec-CCcEEEEEcCC-CeEEEEe--ee-----------cCcCeEEEEEccCCCEEEEee-CCCeEEEEe
Q 021459          114 NFNPQSNLIVSGSF-DESIRIWEVKT-GKCTRVI--RA-----------HSMPVTSVHFNRDGSLIVSGS-HDGTCKIWD  177 (312)
Q Consensus       114 ~~~~~~~~l~s~~~-dg~i~~wd~~~-~~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  177 (312)
                      +++|++++++++.. +|.|.++++.. +......  ..           ......++.++|+++++++.. ....|.+|+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            89999999988875 78999999976 4333221  11           112357899999999887754 345789998


Q ss_pred             CCCCc--ee--eEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcC--CCcE--EEEEEcc----CCceeEEEEEE
Q 021459          178 AGEGA--CL--KTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYS--AGKF--LKIYTGH----TNKKYCITSTF  244 (312)
Q Consensus       178 ~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~~~--~~~~~~~----~~~~~~~~~~~  244 (312)
                      +....  ..  ..+.......-..+.|+|+++++.+. -.++.|.+|++.  ++..  +......    ......-... 
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-  251 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA-  251 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE-
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE-
Confidence            87654  21  22222344556778899999988665 457889999988  4432  2222211    1111222333 


Q ss_pred             EccCCcEEEE-eecCCeEEEEECCc--h--heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          245 SVTNGKYIVS-GSEDNCVYVWDLQQ--K--TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       245 ~~~~~~~l~~-~~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ..+++++|.+ ....+.|.+|++..  +  +.+..+.......+.++++|++++|+++..++ .+|.+|++|
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-~~v~vf~~d  322 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-NTVSVFDID  322 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-CeEEEEEEe
Confidence            3477887655 45678999999932  2  22333333344579999999999999887654 578888775

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=2.1e-13  Score=120.64  Aligned_cols=192  Identities=20%  Similarity=0.309  Sum_probs=151.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCE----EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI----SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      -.+.-+...++.+..+..+.+|+...+..+.++.+.....    .-+.++++.-++++|+.-+.|.+|+....... ..+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l  171 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-IRL  171 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-cee
Confidence            3444566778888888999999988877666554322211    12234566678999999999999997643332 267


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE-EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR-VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA  182 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (312)
                      .+|.+.++++.++.||.++++.|.|.++++|++.+.+... ..-+|...+..+.+.|+  .+++++.|.+.++|+... .
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~  248 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-T  248 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-c
Confidence            8999999999999999999999999999999999887665 55679999999999998  899999999999996543 3


Q ss_pred             eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      .+..+..+....+..+..+++...+++++.|+.+++||+..
T Consensus       249 ~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  249 QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            33355556666788888999999999999999999998743

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=9.4e-12  Score=107.63  Aligned_cols=234  Identities=15%  Similarity=0.184  Sum_probs=141.3

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL  121 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (312)
                      .+.++|....+. ..+..+...+.+..|+|||+.|+..+.+   ..|.+||+.++...  .+....+......|+||++.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence            566667655443 3344566778899999999988876543   25888898765321  12222233446889999997


Q ss_pred             EEE-eecCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCcE
Q 021459          122 IVS-GSFDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       122 l~s-~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      |+. .+.+|.  |+++|+.+++... +..+........|+|||+.++..+. ++  .|.++|+.+++... +... ....
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~  352 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQN  352 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCC
Confidence            764 455664  7788888776433 3334445567899999998776553 33  46667777665432 2111 1112


Q ss_pred             EEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee-cCC--eEEEEECCch
Q 021459          196 SFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDN--CVYVWDLQQK  269 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~  269 (312)
                      ....|+|+|++|+..+.+ +  .|.++|+.+++... +......   .... +.++++.|+..+ .+|  .+.+++.. +
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d---~~ps-~spdG~~I~~~~~~~g~~~l~~~~~~-G  426 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLD---ESPS-VAPNGTMVIYSTTYQGKQVLAAVSID-G  426 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCC---CCce-ECCCCCEEEEEEecCCceEEEEEECC-C
Confidence            235799999998886553 3  46667877776432 2221111   1112 346777765544 334  36677763 4


Q ss_pred             heeecccCCccceEEEEEcCC
Q 021459          270 TMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       270 ~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      .....+..+.+.+...+|+|-
T Consensus       427 ~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        427 RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            455556555566777788873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=4.7e-12  Score=109.39  Aligned_cols=198  Identities=20%  Similarity=0.229  Sum_probs=133.4

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCC--eEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDR--TLR   89 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~   89 (312)
                      +.+..+...+...+|+|||++|+.+..+   ..|++|++.+++.. .+..+...+..++|+|+++.|+. .+.++  .|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3455566778899999999999887643   47999999887543 23345556677999999987764 44444  588


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +||+.++.  ...+..+........|+|+++.++..+. ++  .|+++|+.+++.. .+..+........|+|++++++.
T Consensus       262 ~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~  338 (417)
T TIGR02800       262 VMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAF  338 (417)
T ss_pred             EEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEE
Confidence            88887643  2333334444556789999998876554 33  5778888776543 33334455677899999999988


Q ss_pred             eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEE
Q 021459          167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWN  220 (312)
Q Consensus       167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d  220 (312)
                      ++.++   .|.+||+.++... .+.. . .......|+|+++.|+..+.++   .+++.+
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~~-~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGER-VLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             EEccCCceEEEEEeCCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence            87775   7889998875432 2221 1 1123346999999888876654   344444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.6e-13  Score=112.01  Aligned_cols=252  Identities=20%  Similarity=0.316  Sum_probs=174.6

Q ss_pred             eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC--CEEEEeecCCcEEE
Q 021459           56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRI  133 (312)
Q Consensus        56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~  133 (312)
                      +..++..|.+.|..+.|+..|..|+++++|..|.+||.......+....+|...|....|-|..  ..+++++.||.|++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            3456788999999999999999999999999999999877666666677899999999998853  57899999999998


Q ss_pred             EEcC-CCeE--EEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcc--cCCCC---cEEEEEECCCC
Q 021459          134 WEVK-TGKC--TRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLI--DDKDP---AVSFAKFSPNG  204 (312)
Q Consensus       134 wd~~-~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~---~~~~~~~~~~~  204 (312)
                      =.+. ++.+  ...+..|..+|..++..|+. ..|.+++.|+.+.-+|++.+.....+.  ..+..   ....++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            7663 3333  23455688999999998865 468899999999999998765432221  11112   23445677755


Q ss_pred             C-EEEEEecCCeEEEEEcCCCcE------EEEEEccC---CceeEEEEE-EEccCCcEEEEeecCCeEEEEECCch----
Q 021459          205 K-FILVGTLDSTLKLWNYSAGKF------LKIYTGHT---NKKYCITST-FSVTNGKYIVSGSEDNCVYVWDLQQK----  269 (312)
Q Consensus       205 ~-~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~----  269 (312)
                      . .+++++.|..+++||.+.-..      +..+..+.   .....|+.. +....+++|++- .|-.|+++.-..+    
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccCCC
Confidence            4 889999999999999764321      12221111   111223333 333445666655 4556888854321    


Q ss_pred             --------heeec-ccCCc--cceEEEEE-cCCCceEEEeeecCCeeEEEEee
Q 021459          270 --------TMIQK-LDGHT--DSVISVTC-HPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       270 --------~~~~~-~~~h~--~~v~~l~~-~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                              ..+.. ++||.  ..|..+-| -|...++++||.  -+.|.||+-
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD--CGhIFiW~K  423 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD--CGHIFIWDK  423 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCc--cceEEEEec
Confidence                    12233 67885  35777765 577788888874  369999985

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=4.1e-11  Score=99.85  Aligned_cols=273  Identities=14%  Similarity=0.244  Sum_probs=165.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-----cC-----CCeEEEEe
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-----SD-----DRTLRIWD   92 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----d~~v~~wd   92 (312)
                      .+++..++|++|+++|.+ .++.++|++..+...+.....  ..++++.|+|.+.+|.+=     -.     .-.+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            346777889999988876 456899999888764444333  278899999999998752     11     23577999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC--EEEE----
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS--LIVS----  166 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~----  166 (312)
                      +.+. .....+......-++..|++|..+.+ --..+.+++|++.+-+.+. -+.|...+..+.++|.+.  .+++    
T Consensus       112 vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  112 VETG-VQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eccc-eehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccC
Confidence            8873 22222221111225777877754322 1223468888876533221 122344455555555421  1111    


Q ss_pred             -eeCCCeEEEEe---------------------------------------------------------CCCCceeeEcc
Q 021459          167 -GSHDGTCKIWD---------------------------------------------------------AGEGACLKTLI  188 (312)
Q Consensus       167 -~~~d~~i~iwd---------------------------------------------------------~~~~~~~~~~~  188 (312)
                       .+.-+.+++|-                                                         +....+...  
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~--  266 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP--  266 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe--
Confidence             12222344432                                                         221111111  


Q ss_pred             cCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee---cCCeEEE
Q 021459          189 DDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS---EDNCVYV  263 (312)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i  263 (312)
                      ....+.+..+.|+|+++.+++.  -.-..+.|||++. ..+..+.  .+..++   .++.+.|++++.++   --|.|.+
T Consensus       267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~---~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNT---AFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccc---eEECCCCCEEEEeecCCCCCceEE
Confidence            1234567788899999876664  4456889999854 4443332  222222   35557888887655   4589999


Q ss_pred             EECCchheeecccCCccceEEEEEcCCCceEEEeeec----CCeeEEEEeec
Q 021459          264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD----GDRTVRVWVQD  311 (312)
Q Consensus       264 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d----gd~~v~iw~~~  311 (312)
                      ||..+.+++..+..-.  -.-..|+|+|++++|++..    -|+.++||+++
T Consensus       341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            9999988888776533  3566899999999998754    24678999974

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=6.1e-10  Score=93.35  Aligned_cols=241  Identities=16%  Similarity=0.281  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCEEEEEeC----CCeEEEEeCCCc--c--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCC
Q 021459           24 AVSCVKFSNDGTLLASASL----DKTVIIWSASSL--A--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDAR   94 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~----d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~   94 (312)
                      .-+-++++|++++|.+...    ++.|..|.+...  +  .+............++++|++++|+++. .+|.+.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3456889999999988866    578888876643  2  3344443445667899999999999886 48899999987


Q ss_pred             CCceeee---eee----------cccccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCe--EEE--Eee-ecCcCeEEE
Q 021459           95 TPFDCLK---TLR----------GHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGK--CTR--VIR-AHSMPVTSV  155 (312)
Q Consensus        95 ~~~~~~~---~~~----------~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~--~~~--~~~-~~~~~v~~~  155 (312)
                      .......   ...          .......++.++|+++++++... ...|.+|++....  ...  .+. ......+.+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            6322211   111          11234678999999998887654 3579999987654  221  222 233456899


Q ss_pred             EEccCCCEEEEe-eCCCeEEEEeCC--CCce--eeEcc---cC--CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcC--
Q 021459          156 HFNRDGSLIVSG-SHDGTCKIWDAG--EGAC--LKTLI---DD--KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS--  222 (312)
Q Consensus       156 ~~~~~~~~l~~~-~~d~~i~iwd~~--~~~~--~~~~~---~~--~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~--  222 (312)
                      .|+|+++++.+. ..++.|.++++.  ++..  ...+.   ..  .......+.++|||++|.++. .++.|.+|++.  
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence            999999987654 457789999887  3322  11111   11  112466778999999988875 56789999983  


Q ss_pred             CCcEE--EEEEccCCceeEEEEEEEccCCcEEEEee-cCCeEEEEECC
Q 021459          223 AGKFL--KIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQ  267 (312)
Q Consensus       223 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~  267 (312)
                      +++..  ..+......  .-.+.+ .+++++|+++. .++.|.+|++.
T Consensus       278 ~g~l~~~~~~~~~G~~--Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  278 TGTLTLVQTVPTGGKF--PRHFAF-SPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTTEEEEEEEEESSSS--EEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCceEEEEEEeCCCCC--ccEEEE-eCCCCEEEEEecCCCeEEEEEEe
Confidence            34432  222222221  222333 36788777655 77899999763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.1e-13  Score=115.13  Aligned_cols=277  Identities=17%  Similarity=0.308  Sum_probs=187.5

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-------cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-------LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ...+.+|...|..++--.+.+.+++++.|+++++|.+..       ..+...+..|+.+|.++.|-.+-++++++  |+-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999987767778899999999999998763       23567788999999999999998888875  889


Q ss_pred             EEEEeCCCCceeeeee----ecccccEEEEEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeec-----CcCeEEEEE
Q 021459           88 LRIWDARTPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAH-----SMPVTSVHF  157 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~  157 (312)
                      +.+||.--+....+..    .+..+.|.|+. +-+...++++ +...+|+++|.+.+.-...++.-     ...+++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            9999975432211111    12234455543 2244455544 78899999999988766555432     345789999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE-EEcCCCcEEEEEEccCCc
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL-WNYSAGKFLKIYTGHTNK  236 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~  236 (312)
                      .+.|+.++++-.+|.|.+.|.++|..+.......-.....  -.|..+.|+....|..+.+ |...++.........+.+
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql--aapsdq~L~~saldHslaVnWhaldgimh~q~kpppep  962 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL--AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP  962 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh--cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence            9999999999999999999999998776543322111211  2455667777788889988 887666544333322222


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeeccc--CCccceEEEEEcCCCceEEEeeecC
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLD--GHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      ..     +...-|.-|+++.....+.+|--...    ..+.+++  ...+..++++.-|-+..++.|...|
T Consensus       963 ah-----flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen  963 AH-----FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred             hh-----hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence            11     11123556788877788888843211    1122222  2345677888888888777777554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2e-11  Score=104.87  Aligned_cols=210  Identities=15%  Similarity=0.096  Sum_probs=127.3

Q ss_pred             ecccccceEEEEECCCCCEE---EEEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CC----e
Q 021459           18 LTAHSRAVSCVKFSNDGTLL---ASASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DR----T   87 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l---~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~   87 (312)
                      +......+..-+|||||+.+   ++...+|  .|.+.++.+++.. .+..........+|+|||+.|+..+. +|    .
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            34445566778999999752   3444444  4566677766542 33334445567899999998876543 23    3


Q ss_pred             EEEEeCCCC--ceeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEE--EcCC-CeEEEEeeecCcCeEEEEEccCC
Q 021459           88 LRIWDARTP--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIW--EVKT-GKCTRVIRAHSMPVTSVHFNRDG  161 (312)
Q Consensus        88 v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~w--d~~~-~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
                      +..|++..+  ........+..+.....+|+|||+.|+..+ .+|...+|  ++.. +.....+..+...+....|+|||
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            344665532  111222222223345679999999777655 45655555  4432 22233344444456788999999


Q ss_pred             CEEEEeeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec---CCeEEEEEcCCCcEEEEE
Q 021459          162 SLIVSGSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL---DSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       162 ~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~  230 (312)
                      +.++..+.+   ..|.+||+.+++... +... ........|+|||+.|+....   ...|+++|+..++.....
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            988866543   368999998776532 3222 223455779999998876543   356888888777654443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.1e-11  Score=105.59  Aligned_cols=199  Identities=18%  Similarity=0.208  Sum_probs=129.4

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCC--eEEE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDR--TLRI   90 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~~   90 (312)
                      .+..+...+...+|+|||+.|+..+.+   ..|.+|++.+++... +....+.+...+|+|||+.|+ +.+.++  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            455677788999999999998776543   368889998776532 333334455789999999876 444454  5788


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      ||+.++.  ...+..+........|+||++.++..+. +|  .|+++|+.+++..... ..........|+|+|+.++..
T Consensus       272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEE
Confidence            8987643  2334444445566789999998766553 33  5777788777643322 122223456899999998876


Q ss_pred             eCC-C--eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcC
Q 021459          168 SHD-G--TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYS  222 (312)
Q Consensus       168 ~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~  222 (312)
                      +.+ +  .|.++|+.+++. +.+... .. .....|+|+|+.++..+.+   ..+.+.+..
T Consensus       349 ~~~~~~~~l~~~dl~tg~~-~~lt~~-~~-~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSV-RILTDT-SL-DESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EccCCceEEEEEECCCCCE-EEccCC-CC-CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            643 3  477889887653 222221 11 1234699999999887654   346666664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.7e-11  Score=104.77  Aligned_cols=205  Identities=17%  Similarity=0.191  Sum_probs=126.5

Q ss_pred             ecccccceEEEEECCCCCEEEEEeC-CC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCCe--EEEE
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASL-DK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDRT--LRIW   91 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--v~~w   91 (312)
                      +..+...+...+|+|||+.|+..+. ++  .|.+||+.+++... +..........+|+|||+.|+. .+.++.  |+++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            3445567788999999998887643 33  57888888766422 2222333457899999997765 455664  7777


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      |+.++.  ...+..+.......+|+||++.++..+. ++  .|+++|+.+++..... ..........|+|||++++..+
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence            877642  3334444445667899999998766543 34  4666788777644322 2222234568999999887765


Q ss_pred             CC-C--eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEE
Q 021459          169 HD-G--TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIY  230 (312)
Q Consensus       169 ~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~  230 (312)
                      .+ +  .|.++|+.++... .+... . ......|+|+|+.|+..+.+ +  .+++++. ++.....+
T Consensus       369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l  432 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL  432 (448)
T ss_pred             ecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            43 3  4555787776532 22211 1 11123699999988876543 2  3666776 34443333

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=6.6e-13  Score=123.42  Aligned_cols=196  Identities=14%  Similarity=0.251  Sum_probs=152.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      |-..|.++.=+|...+-+||+.||.+++|....++.+..++. -+..|+.+.|+.+|+.+..+..||.+.+|...  .+.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKP 2284 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccc
Confidence            445666777778888899999999999999888877655542 23788999999999999999999999999886  244


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEee---cCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGS---FDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      ....+.|+.......|-.  ..+++++   .++.+.+||..-. ..-.+-..|...++++++.|..++|++|+.+|.|++
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            556677887777777765  4566654   4578999997422 111222789999999999999999999999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      ||++..+..+.+..          ++ ...++++|+..|.++||++..-..++.+.
T Consensus      2363 ~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99998776655432          33 45689999999999999998766555443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.1e-10  Score=100.17  Aligned_cols=239  Identities=15%  Similarity=0.143  Sum_probs=135.7

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE---EEEcCCC--eEEEEeCCCCceeeeeeecccccEEEEEEecC
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI---CSASDDR--TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ  118 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~--~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  118 (312)
                      ..|.+.|....+.. .+......+.+-+|+|||+.+   ++...++  .|.+.++..+..  ..+....+.....+|+||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence            35666676655443 333345566788999999742   2443343  577778766432  222223334556899999


Q ss_pred             CCEEEEeec-CC----cEEEEEcCCC---eEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEE--eCCC-CceeeE
Q 021459          119 SNLIVSGSF-DE----SIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIW--DAGE-GACLKT  186 (312)
Q Consensus       119 ~~~l~s~~~-dg----~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~  186 (312)
                      |+.|+..+. +|    .+..|++..+   +................|+|||+.|+..+ .+|...+|  ++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            988776543 23    2344676653   32223222222345679999999877655 45655555  4432 222222


Q ss_pred             cccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe-e--cCCe
Q 021459          187 LIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG-S--EDNC  260 (312)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~dg~  260 (312)
                      +.. .........|+|||+.|+..+.+   ..|.+||+.+++....... ...   .....+.++++.|+.. .  ....
T Consensus       322 lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~---~~~p~wSpDG~~L~f~~~~~g~~~  396 (428)
T PRK01029        322 LTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN---KESPSWAIDSLHLVYSAGNSNESE  396 (428)
T ss_pred             ecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC---ccceEECCCCCEEEEEECCCCCce
Confidence            222 22234456799999998876543   4799999988876443322 111   1112234678777643 2  2356


Q ss_pred             EEEEECCchheeecccCCccceEEEEEcCCC
Q 021459          261 VYVWDLQQKTMIQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       261 i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~  291 (312)
                      |.++|+..++... +....+.+...+|+|..
T Consensus       397 L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        397 LYLISLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence            8888987665433 32234456677888753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=2e-12  Score=114.57  Aligned_cols=148  Identities=30%  Similarity=0.407  Sum_probs=126.1

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccc
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD  108 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~  108 (312)
                      .++++.-++++|+.-+.|.+|.....+.-.++.+|.+.|.++.|+.||++++++|+|+++++|++++.........+|+.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            45677778999999999999988744444478999999999999999999999999999999999986554446678999


Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-CeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-PVTSVHFNRDGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (312)
                      .++.++|.|.  .+++++.|-+.++|+.+ ++.+..+..|.. .+..++..++.-..++++.|+.+++||+.
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            9999999997  99999999999999754 444557777754 58899999988899999999999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=7.3e-09  Score=85.27  Aligned_cols=255  Identities=12%  Similarity=0.183  Sum_probs=147.9

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC----------CCeEEEEeCCCCceeeeeeeccc------
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD----------DRTLRIWDARTPFDCLKTLRGHS------  107 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~------  107 (312)
                      +.|.+.|..+++.+..+..-..+ ..+ ++||++.|+++..          +..|.+||..+. +.+..+.-..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhc
Confidence            78999999999988877643332 234 9999998877755          689999999885 3343333211      


Q ss_pred             -ccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-Cce
Q 021459          108 -DFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-GAC  183 (312)
Q Consensus       108 -~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~  183 (312)
                       ..-..++++||+++++....  +..|.+.|+.+++.+..+....+ ..-...+++..+  +-+.||......+.+ ++.
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCccE--EEeecCceEEEEecCCCce
Confidence             12236788999999887763  68899999999998877654321 112222222211  112333333222111 111


Q ss_pred             -eeE--cc-cCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCc-----EEEEEEcc-------CCceeEEEEEEEc
Q 021459          184 -LKT--LI-DDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGK-----FLKIYTGH-------TNKKYCITSTFSV  246 (312)
Q Consensus       184 -~~~--~~-~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~  246 (312)
                       ...  +. ....+....-.+.+ +|+++.+... |.|.+.|+....     ....+...       ......  ..+ .
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~-~  256 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY-H  256 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE-c
Confidence             111  11 11111111112344 7877776665 999999965432     22222111       111111  223 3


Q ss_pred             cCCcEEEE-e---------ecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEEee
Q 021459          247 TNGKYIVS-G---------SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       247 ~~~~~l~~-~---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw~~  310 (312)
                      ++++.+.. .         ...+.|.++|..+++.+..+.- ...+..++++|+++ .|.+.. ...++|.+.|.
T Consensus       257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn-~~s~~VsViD~  329 (352)
T TIGR02658       257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS-TGDKTLYIFDA  329 (352)
T ss_pred             CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC-CCCCcEEEEEC
Confidence            45555544 3         1225899999999998888763 45789999999998 555444 23456777765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.43  E-value=5.5e-11  Score=99.62  Aligned_cols=189  Identities=17%  Similarity=0.270  Sum_probs=142.1

Q ss_pred             cCCCEEEEeecCCcEEEEEcCCCeEEEEeeec---CcCeEEEEE------cc--------------CCCEEEEeeCCCeE
Q 021459          117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH---SMPVTSVHF------NR--------------DGSLIVSGSHDGTC  173 (312)
Q Consensus       117 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~d~~i  173 (312)
                      |...+++....||.+++||...++....+...   .+...+..|      +|              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            33467888899999999999988776655321   122233333      11              33467889999999


Q ss_pred             EEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          174 KIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      .+++...++....+. +.+...+..+.++.+-..|.+++.|..+..|+......++.+.........+   ...+++..+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl---~is~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL---CISPDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE---EEcCCCCEE
Confidence            999999998877776 4566777778788888899999999999999999998888877655443322   233678899


Q ss_pred             EEeecCCeEEEEECCchheeecccCCccceEEEEEcCC-----CceEEEeeecCCeeEEEEeec
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT-----ENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++++  +.|.+||+++++.+..+.||.++|++++|--.     |.+++++ ++.+.-+-+|..+
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~~r~i~~w~v~  220 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAAERGITVWVVE  220 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec-cccccceeEEEEE
Confidence            8875  58999999999999999999999999999765     5555543 3455667777653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=1.7e-12  Score=120.79  Aligned_cols=198  Identities=15%  Similarity=0.287  Sum_probs=150.8

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      +-..|.++.=+|...+.++|+.||.+++|.-..+.....--.+....+..+.|+.+|+.+..+..||.+.+|... .+..
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            446677777788888999999999999998766544332222333778889999999999999999999999987 4555


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEee---CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGS---HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW  219 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~  219 (312)
                      ...+.|......+.|-.  ..+++++   .++.+.+||..-.....-+...++...+.+++-|..+.|++|+.+|.|++|
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence            66778888888888865  5566654   467899999754322211224466678888999999999999999999999


Q ss_pred             EcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      |++..+.+..++.       +      ...+++++|+..|.|+||++.....+..+.
T Consensus      2364 D~rqrql~h~~~~-------~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA-------L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ehHHHHHHHHhhh-------h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence            9987766655443       1      135689999999999999998877666554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.41  E-value=2.5e-09  Score=99.33  Aligned_cols=282  Identities=13%  Similarity=0.175  Sum_probs=173.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEE----eCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIW----SASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-   95 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~-   95 (312)
                      ..+.|.++.+-++...++.+..+|.|.+.    +..... +.....-..+|.+++||||+..|+....++++.+.+-.- 
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            34679999999999999999999999988    433322 222223457899999999999999998888887753210 


Q ss_pred             ------------C----------ceee-------e-----------------eeecccccEEEEEEecCCCEEEEeec--
Q 021459           96 ------------P----------FDCL-------K-----------------TLRGHSDFVFCVNFNPQSNLIVSGSF--  127 (312)
Q Consensus        96 ------------~----------~~~~-------~-----------------~~~~~~~~v~~~~~~~~~~~l~s~~~--  127 (312)
                                  +          .+..       +                 .+. .++.-..++|-.||+++++.+.  
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence                        0          0000       0                 011 2334467889999999998775  


Q ss_pred             -C---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCceeeEccc---CCCCcEEE
Q 021459          128 -D---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACLKTLID---DKDPAVSF  197 (312)
Q Consensus       128 -d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~---~~~~~~~~  197 (312)
                       .   ..+++|+-+ |....+.+.-.+--.+++|.|.|+++++...   ...|.+|. ++|..-..+.-   .....+..
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence             2   468999955 6544433332333457899999999988764   23566665 34433333322   23456788


Q ss_pred             EEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-CCceeEEEEEEEccCCcEEEEeecCCeEEEEEC----------
Q 021459          198 AKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL----------  266 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----------  266 (312)
                      +.|++++..||+...|. |.+|...+....-...-. ..........|.+.+...|...+.+|.+..+++          
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            99999999999977554 999988776542111111 111001113344444444555555455544432          


Q ss_pred             ---------------------Cchhee-----ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          267 ---------------------QQKTMI-----QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       267 ---------------------~~~~~~-----~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                                           +.....     ..+ ....+|.+++|++++..+++-..||  +|.+|..
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~--~l~~~~~  455 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDG--SLSIYEW  455 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCC--CEEEEEe
Confidence                                 110000     011 1346899999999988888888665  5666553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=4.3e-10  Score=94.41  Aligned_cols=190  Identities=17%  Similarity=0.202  Sum_probs=142.6

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcceEEEeee---ccCCEEEEEE--------------------ccCCCeEEEEcCCCe
Q 021459           31 SNDGTLLASASLDKTVIIWSASSLALVHRFVG---HSEGISDLAW--------------------SSDSHYICSASDDRT   87 (312)
Q Consensus        31 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~--------------------~~~~~~l~~~~~d~~   87 (312)
                      .|-..++|....||.+|+|+..++++...+..   -.+.-.+..|                    +.+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567899999999999999988776554431   1223333433                    123345667777899


Q ss_pred             EEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           88 LRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      |.+|++..+.-..+.. ..|.+.|.++.++.+-..+.+++.|+.+..|+...++.++..+..+..+.+++++||+..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999987653222222 468999999999998899999999999999999999999998888888999999999999998


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-----CCEEEEE-ecCCeEEEEEcCC
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-----GKFILVG-TLDSTLKLWNYSA  223 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~-~~d~~i~v~d~~~  223 (312)
                      ++.  .|++||+.+++.+..+.+ +...+..+.|..+     |.+++++ ..+..+.+|-.+.
T Consensus       162 as~--~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 ASR--QIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccc--eEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            864  899999999998888765 4566777767665     6666654 4455566665443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=2.4e-11  Score=95.42  Aligned_cols=248  Identities=18%  Similarity=0.309  Sum_probs=171.8

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRI  133 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~  133 (312)
                      .++.+++||.+.|+....-|-..-+++.+.|.++++|--++..+.-..+. .-..++.++.+.++...|+.|-..|++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            45677889999999888888888899999999999996444322211111 12457889999999999999999999998


Q ss_pred             EEcC----CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE
Q 021459          134 WEVK----TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       134 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      +.+.    ....++....|...+..+-|+-..+++++.+.|..+.---.+.+..+.........  ....++-.  +...
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--SALQFDAL--YAFV  170 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC--CCCceeeE--EEEe
Confidence            8664    33445566789999999999988899999999987664433333322211100000  00011111  4455


Q ss_pred             EecCCeEEEEEcC--CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch-heeecccCCccceEEEE
Q 021459          210 GTLDSTLKLWNYS--AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-TMIQKLDGHTDSVISVT  286 (312)
Q Consensus       210 ~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~  286 (312)
                      |...|.|.+-.+.  .-..+..+.+|...   +.+..+.+....|.+|..|..+.+||+.-+ ....++.+|.+.|..+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~---~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGE---VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS  247 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccc---eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence            6666666554432  33445666677665   444555677889999999999999999644 33456788999999998


Q ss_pred             EcCCCceEEEeeecCCeeEEEEeec
Q 021459          287 CHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       287 ~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .-+.-++|.+++.|  +-|.+|+++
T Consensus       248 ~~~~t~~l~S~~ed--g~i~~w~mn  270 (404)
T KOG1409|consen  248 YAQHTRQLISCGED--GGIVVWNMN  270 (404)
T ss_pred             hhhhheeeeeccCC--CeEEEEecc
Confidence            88888899998855  478888874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=6.2e-11  Score=93.23  Aligned_cols=245  Identities=15%  Similarity=0.299  Sum_probs=156.7

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce----eeeeeeccc------------ccEEEEEEecCCC--EEEEe
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD----CLKTLRGHS------------DFVFCVNFNPQSN--LIVSG  125 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~~--~l~s~  125 (312)
                      .+-|.++.|...|.+|++|..+|.|.++.-.....    ....++.|.            ..|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45678999999999999999999999986433221    222233332            3467788887664  56777


Q ss_pred             ecCCcEEEEEcCCCeE-----------------------------------EEEe-eecCcCeEEEEEccCCCEEEEeeC
Q 021459          126 SFDESIRIWEVKTGKC-----------------------------------TRVI-RAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus       126 ~~dg~i~~wd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ..|.+|++|.+.....                                   .+.+ .+|..-|.++.++.|++.++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            8899999998743211                                   0111 2355568899999999888775 5


Q ss_pred             CCeEEEEeCCCCceeeEcc---cC----CCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcE----EEEEEccCCc-
Q 021459          170 DGTCKIWDAGEGACLKTLI---DD----KDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKF----LKIYTGHTNK-  236 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~---~~----~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~-  236 (312)
                      |-.|.+|++.-......+.   ..    -...++.+.|+|.. +.++-.+..|+|++.|++....    .+.+.....+ 
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            6789999886422211111   11    12346667788854 5777788899999999984321    1112111111 


Q ss_pred             --------eeEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeecccCCcc---------------ceEEEEEcCCCc
Q 021459          237 --------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTD---------------SVISVTCHPTEN  292 (312)
Q Consensus       237 --------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~---------------~v~~l~~~p~~~  292 (312)
                              ...+.-..+..+|+++++-.. -+|++||++. ..++..++-|..               .=..++|+.++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                    112333334467899887533 6899999953 344444443321               235678899999


Q ss_pred             eEEEeeecCCeeEEEEeecC
Q 021459          293 KIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~~~  312 (312)
                      .++|||+.  ..+|+++.+|
T Consensus       343 ~v~TGsy~--n~frvf~~~~  360 (433)
T KOG1354|consen  343 YVMTGSYN--NVFRVFNLAR  360 (433)
T ss_pred             eEeccccc--ceEEEecCCC
Confidence            99999986  4788887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.38  E-value=4.8e-09  Score=86.31  Aligned_cols=174  Identities=16%  Similarity=0.227  Sum_probs=128.6

Q ss_pred             ECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC-eEEEEeCCCCceeeeeeeccc
Q 021459           30 FSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR-TLRIWDARTPFDCLKTLRGHS  107 (312)
Q Consensus        30 ~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~~wd~~~~~~~~~~~~~~~  107 (312)
                      |++ +|++++..+. |...+.+...+-.+.  .+|...|.-..+..+++-++.|..|| .+-++|.+++.  .+...+.-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCc
Confidence            443 6788888877 456665544443322  35777888888888888889999999 89999998753  45556667


Q ss_pred             ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC----eEEEEeCCCCce
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG----TCKIWDAGEGAC  183 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~  183 (312)
                      +.|.++..+++|++++.+.....|-+.|+.++.....-+....-|+.+.|+|+++++|-+-.+|    .|+++|+..++.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            8899999999999999999889999999999987665556667799999999999998765554    689999988765


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVG  210 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
                      ...... . ..-..-+|+|++++|..-
T Consensus       482 y~vTT~-t-a~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         482 YDVTTP-T-AYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEecCC-c-ccccCcccCCCCcEEEEE
Confidence            442211 1 111223588898877543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.7e-10  Score=96.54  Aligned_cols=231  Identities=15%  Similarity=0.207  Sum_probs=150.7

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccc
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD  108 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~  108 (312)
                      -++.|-..++--..|..|.+......-...++.   ..-.+++++.-..-|+.++....|+-++++.+ ..+..+....+
T Consensus       101 iLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~  176 (703)
T KOG2321|consen  101 ILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSG  176 (703)
T ss_pred             EeccchhhheEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccc
Confidence            334454445555566666665332211111111   12235666643333444444556777788765 34555555667


Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee------cCc-----CeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA------HSM-----PVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      .+.++..++...+|++|+.+|.|.+||.+.......+..      |..     .|+++.|+.+|-.+++|+.+|.+.+||
T Consensus       177 ~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  177 ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            899999999999999999999999999987665544422      222     389999999999999999999999999


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      ++..+.+..--......+..+.|.+.  ++.++ ......++|||-.+|+....+..... ..  ..++ .+++.+++++
T Consensus       257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt~~-lN--D~C~-~p~sGm~f~A  331 (703)
T KOG2321|consen  257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEPTSD-LN--DFCF-VPGSGMFFTA  331 (703)
T ss_pred             cccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeeccccCC-cC--ceee-ecCCceEEEe
Confidence            99887665432233344555666554  33444 34456899999999988766554332 11  1223 3567788999


Q ss_pred             ecCCeEEEEECCc
Q 021459          256 SEDNCVYVWDLQQ  268 (312)
Q Consensus       256 ~~dg~i~iwd~~~  268 (312)
                      .+++.+..|=+..
T Consensus       332 ne~~~m~~yyiP~  344 (703)
T KOG2321|consen  332 NESSKMHTYYIPS  344 (703)
T ss_pred             cCCCcceeEEccc
Confidence            9999988886654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.2e-08  Score=81.25  Aligned_cols=267  Identities=13%  Similarity=0.229  Sum_probs=167.5

Q ss_pred             CCeEEEEeCCC--cce-EEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCC--Cce-eeeeeecccccEEEE
Q 021459           43 DKTVIIWSASS--LAL-VHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDART--PFD-CLKTLRGHSDFVFCV  113 (312)
Q Consensus        43 d~~i~vw~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~--~~~-~~~~~~~~~~~v~~~  113 (312)
                      ++-|.+|++.+  +++ ......+.+.++-|+|+|+++.|.++..+   |.|-.|.++.  +.. .+.........-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56799998773  221 11223456778899999999999888554   5666666543  221 111111111222678


Q ss_pred             EEecCCCEEEEeecC-CcEEEEEcCC-CeEEE--EeeecCcC----------eEEEEEccCCCEEEEeeC-CCeEEEEeC
Q 021459          114 NFNPQSNLIVSGSFD-ESIRIWEVKT-GKCTR--VIRAHSMP----------VTSVHFNRDGSLIVSGSH-DGTCKIWDA  178 (312)
Q Consensus       114 ~~~~~~~~l~s~~~d-g~i~~wd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iwd~  178 (312)
                      +.++++++++++... |.|.++-++. |....  .+..|..+          +....+.|+++++++..- ...|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            899999999988765 7899998865 32221  12223333          677889999998887653 347899999


Q ss_pred             CCCceeeEc--ccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCC-cEEEEEEcc-------CCceeEEEEEEEcc
Q 021459          179 GEGACLKTL--IDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAG-KFLKIYTGH-------TNKKYCITSTFSVT  247 (312)
Q Consensus       179 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~  247 (312)
                      ..+.....-  .-..+..-..+.|+|++++..+.. .+++|.+|.+... ..+..++..       .+.. ........+
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHISP  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEECC
Confidence            877643211  112334456678999999876654 5899999998773 222222221       1111 222233457


Q ss_pred             CCcEEEEeec-CCeEEEEECCch-h---eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          248 NGKYIVSGSE-DNCVYVWDLQQK-T---MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       248 ~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|++|.+... ...|.+|.+... .   .+.....+...-+...+.|.+.+|++++.++| +|.++..|
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-~i~vf~~d  321 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD-NITVFERD  321 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC-cEEEEEEc
Confidence            8999876542 346788876432 2   22333334455688999999999999999887 48887654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.36  E-value=2.3e-11  Score=104.55  Aligned_cols=299  Identities=21%  Similarity=0.354  Sum_probs=175.3

Q ss_pred             CCCceeceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeecc--CCEEEEEEccCC--CeEEE
Q 021459            8 PYKPYRHFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGHS--EGISDLAWSSDS--HYICS   81 (312)
Q Consensus         8 ~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~   81 (312)
                      ||....+-+.|.- -...+.++..+|.|+-+|.++.-|...+ |+.. +... ++..|.  -.|-.+.|+|..  .+-++
T Consensus         9 pyns~tf~kslsl~v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiV   86 (1081)
T KOG0309|consen    9 PYNSPTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIV   86 (1081)
T ss_pred             CCCCCccCceeEEEecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCc-eeeeccCcchhcceecccCCCCceeEE
Confidence            4444344444433 4667889999999999999988775444 5543 2222 222232  346678888753  34343


Q ss_pred             EcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEE
Q 021459           82 ASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHF  157 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~  157 (312)
                      ......-.+|++..+.  ..-..+.+|...+..+-|+|+. ..+++++.|..+..||+++... ...+..-......++|
T Consensus        87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw  166 (1081)
T KOG0309|consen   87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW  166 (1081)
T ss_pred             ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence            3444556789875432  2233457899999999999975 4789999999999999987643 3333333345567888


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK  236 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  236 (312)
                      +.-..-+++.+..+.|.+||++.+.........+-..+..+.|.. -...+.+++.|++|+.||.............+..
T Consensus       167 nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~  246 (1081)
T KOG0309|consen  167 NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF  246 (1081)
T ss_pred             cccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccC
Confidence            875555666677778999999987644333222333333333321 1235677889999999998654322111111110


Q ss_pred             eeEEEEEEEc-cCCcEEEEeecCCeEEE---------EECCc-hheeecccCCccceEEEEEcCCCc----------eEE
Q 021459          237 KYCITSTFSV-TNGKYIVSGSEDNCVYV---------WDLQQ-KTMIQKLDGHTDSVISVTCHPTEN----------KIA  295 (312)
Q Consensus       237 ~~~~~~~~~~-~~~~~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~h~~~v~~l~~~p~~~----------~l~  295 (312)
                      . .+...+.+ .+|..+.---.+..+.+         |+..+ .+.+..+.||.+.|...-|-..+.          +|+
T Consensus       247 p-iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV  325 (1081)
T KOG0309|consen  247 P-IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV  325 (1081)
T ss_pred             c-ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence            0 01111110 11111111111113333         33322 356788999999998887753322          566


Q ss_pred             EeeecCCeeEEEEeec
Q 021459          296 SAGLDGDRTVRVWVQD  311 (312)
Q Consensus       296 ~~~~dgd~~v~iw~~~  311 (312)
                      |=|  .|.++|+|.++
T Consensus       326 TWS--kD~~lrlWpI~  339 (1081)
T KOG0309|consen  326 TWS--KDQTLRLWPID  339 (1081)
T ss_pred             Eee--cCCceEeeecc
Confidence            655  77899999874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.4e-09  Score=90.94  Aligned_cols=272  Identities=17%  Similarity=0.251  Sum_probs=170.0

Q ss_pred             ceEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCcceEEEeee--ccCCEE-EEEEccCCCeEEEEcCCCeEE
Q 021459           24 AVSCVKFSNDGTLLASASL-----------DKTVIIWSASSLALVHRFVG--HSEGIS-DLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~-----------d~~i~vw~~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      .|.-+.|||..++|+|=+.           ...++|||+.+|.+...+..  ....+. -+.||.|++++|.-.. ..|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            4778899999999998543           26799999999988766654  222232 3689999999987655 5688


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI  164 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
                      ||+... ..++..-.-.-..|....|+|.++.|+-=...     -.+.+..+.+++.+++...+...-..+.|-.+|.+|
T Consensus       330 IyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            887644 22221111123467788899988887643221     246677777777776655554444457788888877


Q ss_pred             EEe----------eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec---CCeEEEEEcCC-CcEEEEE
Q 021459          165 VSG----------SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL---DSTLKLWNYSA-GKFLKIY  230 (312)
Q Consensus       165 ~~~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~-~~~~~~~  230 (312)
                      ..-          +.-..+.|+.++..........-. ..+-..+|-|.|+.+++-+.   ..++.+|...+ .......
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            642          122245667766655433322222 33455679999988776533   35788887763 2211111


Q ss_pred             EccCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEeeecC
Q 021459          231 TGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      . .-....+- ..++.|.|++++.+   |..|.+.++|........ ....|. ..+.+.|.|.|.+++|++.-+
T Consensus       488 k-~~dk~~~N-~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  488 K-ELDKKFAN-TVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             h-hhcccccc-eEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence            1 11122333 34566889988765   567899999987422222 223343 357889999999999987644

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.34  E-value=3.6e-09  Score=90.14  Aligned_cols=256  Identities=15%  Similarity=0.105  Sum_probs=146.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEE-EEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccE--
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISD-LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFV--  110 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v--  110 (312)
                      +..++.++.++.+..+|..+++.+.+.... ..+.+ ...  .+..++.++.++.+..||..++.. +-..+......  
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~  180 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTL  180 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceee
Confidence            445666666777777777777665544322 11211 111  244566677788899998877543 22221111100  


Q ss_pred             ---EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc----C---eEEEEEcc--CCCEEEEeeCCCeEEEEeC
Q 021459          111 ---FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM----P---VTSVHFNR--DGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       111 ---~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~d~~i~iwd~  178 (312)
                         .+....  +..++.+..++.+..+|.++|+.+-.......    .   ...+.-+|  .+..+++++.+|.+..+|.
T Consensus       181 ~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       181 RGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             cCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence               011111  24677788889999999999876543221100    0   00000011  3457777888999999999


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      .+++..-....  .. ..  .....+..+.+++.+|.+..+|..+++.+..........  .. ... ..+..+++++.+
T Consensus       259 ~tG~~~W~~~~--~~-~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~--~s-sp~-i~g~~l~~~~~~  329 (377)
T TIGR03300       259 RSGRVLWKRDA--SS-YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ--LT-APA-VVGGYLVVGDFE  329 (377)
T ss_pred             CCCcEEEeecc--CC-cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc--cc-cCE-EECCEEEEEeCC
Confidence            98876544321  11 11  112245678888899999999999887654432111111  00 001 125688889999


Q ss_pred             CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          259 NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       259 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      |.|.++|..+++.+.+++.+...+..--.-.+ +.|..++.||  .|..
T Consensus       330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG--~l~~  375 (377)
T TIGR03300       330 GYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDG--DLYA  375 (377)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCc--eEEE
Confidence            99999999999888777655543332222223 4577777665  5544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=5.4e-08  Score=77.64  Aligned_cols=247  Identities=13%  Similarity=0.215  Sum_probs=154.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCC--cce--EEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEE
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASS--LAL--VHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIW   91 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~w   91 (312)
                      .+....+-|+|+|+++.|.++..+   |.|-.|.+..  +.+  +.+......+-..+++++++++|+++.. .|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            456678889999999999887554   6677666553  443  2322222334478999999999998865 4788998


Q ss_pred             eCCCCce--eeeeeeccccc----------EEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEee---ecCcCeEEE
Q 021459           92 DARTPFD--CLKTLRGHSDF----------VFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIR---AHSMPVTSV  155 (312)
Q Consensus        92 d~~~~~~--~~~~~~~~~~~----------v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~---~~~~~v~~~  155 (312)
                      -++....  .......|.+.          +.+..+.|+++++++.+.. ..|.+|++..++....-.   .....-+.|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            7754211  11112224433          7788899999999988653 469999998776443221   223456889


Q ss_pred             EEccCCCEEEEee-CCCeEEEEeCCCC-ceeeEc------ccC--CCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCC
Q 021459          156 HFNRDGSLIVSGS-HDGTCKIWDAGEG-ACLKTL------IDD--KDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAG  224 (312)
Q Consensus       156 ~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~------~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~  224 (312)
                      .|+|++++..+.. -+++|.+|..... ..+..+      ...  .......+.+++||++|.++.. ...|.+|.+...
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            9999999876554 5789999987653 112111      111  2234566789999999998742 347778776543


Q ss_pred             -cEEEEEEcc-CCceeEEEEEEEccCCcEEEEeec-CCeEEEEECC
Q 021459          225 -KFLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQ  267 (312)
Q Consensus       225 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  267 (312)
                       ..+...... ......-...+. +.+++|+++++ +..|.+|...
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~-~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNIN-PSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeC-CCCCEEEEEccCCCcEEEEEEc
Confidence             223322211 111111122222 56777766654 4668888764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=1.3e-10  Score=89.47  Aligned_cols=153  Identities=21%  Similarity=0.304  Sum_probs=112.8

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      .++.|++.+..++++-.+|.+.+-+.....+  ...++.|..+.+-..|+.. .+++.+|++|+.+..||++.+...+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            3677889899999999999998655544433  3478899999998999864 578999999999999999965554443


Q ss_pred             -eecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCC--CEEEEeeCCCeEEEEe
Q 021459          103 -LRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDG--SLIVSGSHDGTCKIWD  177 (312)
Q Consensus       103 -~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd  177 (312)
                       .+.|...|.++.-+| .+..+++|++|-.|++||+++. +++..- .-.+.|+.+.++|.-  .+++++..+| .++-+
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~  282 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD  282 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence             556888888887765 5679999999999999999854 433222 234678999999843  3455555554 45555


Q ss_pred             CCC
Q 021459          178 AGE  180 (312)
Q Consensus       178 ~~~  180 (312)
                      ...
T Consensus       283 ~~~  285 (339)
T KOG0280|consen  283 SSD  285 (339)
T ss_pred             ecc
Confidence            543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=4.7e-10  Score=96.47  Aligned_cols=269  Identities=12%  Similarity=0.177  Sum_probs=179.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---------------ALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      ......|++|+.+..+||.||.||.++|..+.+.               .+-..+.||...|.-+.|+.+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4456789999999999999999999999865421               1224578999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEEEEEccCCCE
Q 021459           86 RTLRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  163 (312)
                      |.|.+|-+-.+.-+-... ....+.|.+++|+.||..+.....||.|.+=.+...+.- +.+++  .....+.|++|.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQ  170 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHH
Confidence            999999875532111101 113457889999999999999999998877665543321 11221  22346789999999


Q ss_pred             EEEeeCCCeEEEEeCCCCceee-------Ec---ccCCCCcEEE--------EEECCCCCEEEEEecCCeEEEEEcCC-C
Q 021459          164 IVSGSHDGTCKIWDAGEGACLK-------TL---IDDKDPAVSF--------AKFSPNGKFILVGTLDSTLKLWNYSA-G  224 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~-------~~---~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~v~d~~~-~  224 (312)
                      ++.+-.+|.+.++|....-..+       ..   .......+..        ....|+...|+++...|.+.+-.-.+ .
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            8888889999999865431110       00   0000001111        12346888999999999887743222 2


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---------CeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---------NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      .++- +..  + -. +....+.++|.+|+.++.+         +.|.+|.. -+..+..++.....|+++.|-..|-.++
T Consensus       251 ~Pvv-~dt--g-m~-~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  251 EPVV-VDT--G-MK-IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             CCeE-Eec--c-cE-eecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEE
Confidence            2221 111  1 11 2334455789999887754         35666643 3556677777778899999988877776


Q ss_pred             Ee
Q 021459          296 SA  297 (312)
Q Consensus       296 ~~  297 (312)
                      .+
T Consensus       325 ~A  326 (1189)
T KOG2041|consen  325 IA  326 (1189)
T ss_pred             EE
Confidence            65

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=4.8e-09  Score=86.86  Aligned_cols=275  Identities=15%  Similarity=0.194  Sum_probs=175.4

Q ss_pred             cceEEEEECCCCCEEEEEeCC---------------CeEEEEeCCCcceEEEeeeccCC--EE-EEEEccCCCeEEEEcC
Q 021459           23 RAVSCVKFSNDGTLLASASLD---------------KTVIIWSASSLALVHRFVGHSEG--IS-DLAWSSDSHYICSASD   84 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~   84 (312)
                      ..|..+.|||.+++|.|=+..               ..+.+||..++..+..+.+...+  .+ -+.|+-+..++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            457788999999999985432               24899999999988877765554  44 57888888777655 3


Q ss_pred             CCeEEEEeCCCCcee---eeeeecccccEEEEEEecCCC--EEEE-----eecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           85 DRTLRIWDARTPFDC---LKTLRGHSDFVFCVNFNPQSN--LIVS-----GSFDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        85 d~~v~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      ...++++++ ++.-.   .+.++  ...+....++|.++  .|+.     .+..+.+++|.+..++.+......+..-..
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence            457899986 32111   11111  24567777888643  3332     345678999999876655543333333456


Q ss_pred             EEEccCCCEEEEee-----------CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEc
Q 021459          155 VHFNRDGSLIVSGS-----------HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNY  221 (312)
Q Consensus       155 ~~~~~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~  221 (312)
                      +.|.+.|++++.-.           ....+.+++++...+....  .....+...+|.|.++.+++.  ..+..+.++|+
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccc
Confidence            88999888765321           1245677777643332221  234557777899988877664  46778999998


Q ss_pred             CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec---CCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEe
Q 021459          222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE---DNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      +.. ....+  .......   .++.+.+++++.++-   .|.|.+||....-.+. .+.+-  ....+.|+|+++++.++
T Consensus       306 r~N-l~~~~--Pe~~rNT---~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~  377 (561)
T COG5354         306 RGN-LRFYF--PEQKRNT---IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTD  377 (561)
T ss_pred             ccc-eEEec--CCccccc---ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEec
Confidence            766 22222  1222111   223466788777554   4789999987654443 55443  34566899999988876


Q ss_pred             ee----cCCeeEEEEeec
Q 021459          298 GL----DGDRTVRVWVQD  311 (312)
Q Consensus       298 ~~----dgd~~v~iw~~~  311 (312)
                      ..    .-|..+.||++.
T Consensus       378 ~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         378 TTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             CCCcccccCcceEEEEec
Confidence            43    235789999974

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=1.2e-09  Score=84.31  Aligned_cols=264  Identities=14%  Similarity=0.206  Sum_probs=157.6

Q ss_pred             CCCeEEEEeCCCcceEE--Ee-eeccCCEEEEEEcc---CCC-eEEEEcCCCeEEEEeCCCCceeeeeeecc------cc
Q 021459           42 LDKTVIIWSASSLALVH--RF-VGHSEGISDLAWSS---DSH-YICSASDDRTLRIWDARTPFDCLKTLRGH------SD  108 (312)
Q Consensus        42 ~d~~i~vw~~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~------~~  108 (312)
                      ..|.+.+|++...+...  .+ ...+..+..+.|..   +|. .++-+..+|.|.++....... ...+++-      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s-s~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES-SVHLRGLSSKKISVV  122 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecccee-eeeecccchhhhhhe
Confidence            34678888887665433  22 22345677788863   455 566677889999997643211 1122211      11


Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE--EEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCC-Ccee
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGE-GACL  184 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~  184 (312)
                      ...++.|++.+..++++..+|.+.+-+.......  +..+.|..+.+..+|+. +.+++.+|+.|+.+..||+|. ++.+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            2457788898999999999999985554444333  36788999999999876 446899999999999999993 3333


Q ss_pred             eE-cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEE
Q 021459          185 KT-LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       185 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                      .+ ...+....++...-.|.+.++++|+.|-.|++||.++ ++++..-.. .+..+.+.-... ...++|+++=.+| .+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~-~~~~lL~~CMh~G-~k  279 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPE-IFHRLLAACMHNG-AK  279 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecch-hhhHHHHHHHhcC-ce
Confidence            22 1222334444444456788999999999999999984 444332111 122222221111 1122333333333 34


Q ss_pred             EEECCch--h---eeecccCCccceEEEEEcCCCceEEEeeecCCeeEE-EEee
Q 021459          263 VWDLQQK--T---MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR-VWVQ  310 (312)
Q Consensus       263 iwd~~~~--~---~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~-iw~~  310 (312)
                      |-+.+..  +   .....+.|.+-+..-.|......|+|++.- |..++ +|..
T Consensus       280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY-Dk~~~~~Wl~  332 (339)
T KOG0280|consen  280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY-DKKIRQLWLH  332 (339)
T ss_pred             EEEecccccchheeeeccccccceeeccccccccceeeeeecc-ccceeeeeee
Confidence            4444322  2   233445666666666674445678887764 34544 7753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.31  E-value=1.7e-08  Score=86.01  Aligned_cols=260  Identities=13%  Similarity=0.092  Sum_probs=153.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC  112 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~  112 (312)
                      .+..++.++.++.+..+|..+++.+.+..........+.  .++..++.++.++.+..+|..++...-+ ... .+.+.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~  139 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLS  139 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeee-ecc-Cceeec
Confidence            466788888899999999999988766543332112222  2466788888999999999887644322 211 122221


Q ss_pred             EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe-----EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459          113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV-----TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       113 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (312)
                      .... .+..++.+..+|.|+.+|.++|+.+-.++......     ...... + ..++.+..++.+..+|..+++..-+.
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            1111 24567777889999999999998765544322111     011111 3 36777888899999999888755332


Q ss_pred             ccCCC---Cc---EEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459          188 IDDKD---PA---VSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN  259 (312)
Q Consensus       188 ~~~~~---~~---~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  259 (312)
                      .....   ..   .....-+|  .+..+.+++.+|.++.||..+++.+....... . .    ... ..+..++.++.+|
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~-~----~p~-~~~~~vyv~~~~G  289 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-Y-Q----GPA-VDDNRLYVTDADG  289 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-c-c----Cce-EeCCEEEEECCCC
Confidence            11000   00   00000011  34577788889999999999988665443111 0 0    111 1345777788999


Q ss_pred             eEEEEECCchheeecccCCcc-ceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          260 CVYVWDLQQKTMIQKLDGHTD-SVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       260 ~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .|..+|..+++.+-+...... .......  .+..+++++.+  +.|++++.
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~--G~l~~~d~  337 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFE--GYLHWLSR  337 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCC--CEEEEEEC
Confidence            999999988876544321111 1111112  34567777644  46777664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=3.2e-11  Score=103.45  Aligned_cols=233  Identities=17%  Similarity=0.224  Sum_probs=161.5

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc--------------eeeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPF--------------DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI  131 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  131 (312)
                      ...+++|+.+..++++|+.||.+++..+.+..              ...+++.||.+.|.-+.|+.+...|-++..+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            45689999999999999999999999775421              1235678999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEe--eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEE
Q 021459          132 RIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFIL  208 (312)
Q Consensus       132 ~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  208 (312)
                      .+|-+-.|+-...+  ...++-|.+++|..+|..+.....||.|.+=.+..++.- +.+   .......+.|++|.+.++
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---chheccceeecccHHHHH
Confidence            99998766533222  123456889999999999999999998876554433221 111   122344667999999999


Q ss_pred             EEecCCeEEEEEcCCCcEEE-----------EEEccCCceeEE-----EEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          209 VGTLDSTLKLWNYSAGKFLK-----------IYTGHTNKKYCI-----TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      .+-.+|.+.++|-+..-..+           .+.........+     .....+|+-..|+.+-.+|.+.+-.-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            99899999999975432111           011000000000     11223456678999999999988755443322


Q ss_pred             ecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459          273 QKLDGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       273 ~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      ..+. ..-.+....|+++|..|+.+|.|.|
T Consensus       253 vv~d-tgm~~vgakWnh~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  253 VVVD-TGMKIVGAKWNHNGAVLAVCGNDSD  281 (1189)
T ss_pred             eEEe-cccEeecceecCCCcEEEEccCccc
Confidence            2222 1245788899999999999998765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.30  E-value=1.3e-07  Score=78.01  Aligned_cols=237  Identities=12%  Similarity=0.101  Sum_probs=141.4

Q ss_pred             ECCCCCEEEEEeC----------CCeEEEEeCCCcceEEEeeeccC-------CEEEEEEccCCCeEEEEc-C-CCeEEE
Q 021459           30 FSNDGTLLASASL----------DKTVIIWSASSLALVHRFVGHSE-------GISDLAWSSDSHYICSAS-D-DRTLRI   90 (312)
Q Consensus        30 ~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-d~~v~~   90 (312)
                      +|||++.|+.+..          +..|.+||..+++.+.++.--..       ....++++|||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998877655          78999999999999887763211       234789999999999776 3 689999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEE-EEeee-cC--cCeEE-EEEcc-CCCE
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCT-RVIRA-HS--MPVTS-VHFNR-DGSL  163 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~-~~~~~-~~--~~v~~-~~~~~-~~~~  163 (312)
                      .|+.+. +.+..+.-. +...-...+++.+.  .-+.||......+. +++.. ..... +.  .++.. -.+.+ +|++
T Consensus       133 vD~~~~-kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       133 VDLEGK-AFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EECCCC-cEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            999875 444444321 11111111222222  11234444333222 12211 11110 11  11100 03345 7887


Q ss_pred             EEEeeCCCeEEEEeCCCCce-----eeEccc------CCCCcEEEEEECCCCCEEEEEe----------cCCeEEEEEcC
Q 021459          164 IVSGSHDGTCKIWDAGEGAC-----LKTLID------DKDPAVSFAKFSPNGKFILVGT----------LDSTLKLWNYS  222 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~v~d~~  222 (312)
                      +.+... |.|.+.|+.....     ...+..      ........++++++++.+.+..          ..+.|.++|..
T Consensus       209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            777666 9999999644321     111110      0112233478999999888743          22579999999


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCc-EEEEee-cCCeEEEEECCchheeecc
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGS-EDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  275 (312)
                      +++.+..+..... ...+  . ..++++ +|++.+ .++.|.++|..+.+.+..+
T Consensus       288 t~kvi~~i~vG~~-~~~i--a-vS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       288 TGKRLRKIELGHE-IDSI--N-VSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCeEEEEEeCCCc-eeeE--E-ECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9998877664322 2222  2 346777 666555 6889999999998888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.30  E-value=2.1e-08  Score=94.92  Aligned_cols=241  Identities=12%  Similarity=0.148  Sum_probs=150.9

Q ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEeCCCcceEEEeee--------------ccCCEEEEEEccCCCeEEEEcC-CCeEE
Q 021459           26 SCVKFSND-GTLLASASLDKTVIIWSASSLALVHRFVG--------------HSEGISDLAWSSDSHYICSASD-DRTLR   89 (312)
Q Consensus        26 ~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-d~~v~   89 (312)
                      ..+++++. +++.++-..++.|++++.... .+..+.+              +-.....+++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788875 556666677889999997643 3332221              1123468999998887666544 46788


Q ss_pred             EEeCCCCceeeeeeecc-----------------cccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeec---
Q 021459           90 IWDARTPFDCLKTLRGH-----------------SDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAH---  148 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---  148 (312)
                      ++|..+..  +.++.+-                 -..-..++++| ++..+++.+.++.|++||..++.... +.+.   
T Consensus       650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            89876532  3222110                 01124688999 45566777778899999988775432 1110   


Q ss_pred             ------------CcCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEc------------ccCC--------CCcE
Q 021459          149 ------------SMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTL------------IDDK--------DPAV  195 (312)
Q Consensus       149 ------------~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~--------~~~~  195 (312)
                                  -.....++++|+++ ++++-+.++.|++||+.++......            ....        ....
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                        12345799999988 5556667789999998765421100            0000        0012


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccC----------C-ceeEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459          196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----------N-KKYCITSTFSVTNGKYIVSGSEDNCVYVW  264 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  264 (312)
                      ..++++++|..+++-+.++.|++||..++..........          . ....... ...++|+++++-+.++.|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL-ALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE-EEeCCCCEEEEECCCCEEEEE
Confidence            356789999988888889999999988776543321100          0 0011112 223678899999999999999


Q ss_pred             ECCchhe
Q 021459          265 DLQQKTM  271 (312)
Q Consensus       265 d~~~~~~  271 (312)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9987654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.4e-11  Score=102.69  Aligned_cols=205  Identities=20%  Similarity=0.383  Sum_probs=140.1

Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      +..+.||...|..+.--.+.+-+++++.|.+|++|.++..       .+..+++.|+.+|.++.|-.+.+++++  .||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            4567789888888776667788999999999999998642       355677899999999999988887765  5889


Q ss_pred             EEEEeCCCCceeeEcccC-CCCcEEEEEECC--CCCEEEEE-ecCCeEEEEEcCCCcEEEEEEcc--CCceeEEEEEEEc
Q 021459          173 CKIWDAGEGACLKTLIDD-KDPAVSFAKFSP--NGKFILVG-TLDSTLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSV  246 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~  246 (312)
                      |.+||.--++.+.++... .......+..-+  +...+.++ +...+|+++|.+.++....+...  ..+..........
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999998777665543322 122222222223  44455554 78899999999998876554432  2221122233344


Q ss_pred             cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE-Ee
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV-WV  309 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i-w~  309 (312)
                      +.|+.++.+-.+|+|.+-|.+++..+..+..-+.....++- |..+.|+....|  .++.+ |+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sald--HslaVnWh  946 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALD--HSLAVNWH  946 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhccc--ceeEeeeh
Confidence            77999999999999999999999887766655544444443 444556555533  35555 54

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.5e-10  Score=98.85  Aligned_cols=288  Identities=18%  Similarity=0.275  Sum_probs=171.7

Q ss_pred             CceeceeeecccccceEEEEECCCC------------CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc---
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSNDG------------TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS---   74 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---   74 (312)
                      ..++.++.+..|...|+.++|+|..            -+||++...|.|.+||......+..+..|.+++.+++|-+   
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            3467778888999999999998742            2577888899999999999888888888999999999976   


Q ss_pred             CC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEec------------------------------------
Q 021459           75 DS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP------------------------------------  117 (312)
Q Consensus        75 ~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------  117 (312)
                      +. ..|++-.....+.+|+..++.+.-+.-.+| ....|+.+.|                                    
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence            33 567777778899999887654332221111 2233344333                                    


Q ss_pred             ---------------------------------------CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459          118 ---------------------------------------QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN  158 (312)
Q Consensus       118 ---------------------------------------~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
                                                             .-+.++.......+.++|++-..++....-....+.-+.+-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence                                                   21111222223334444544444444433333333345555


Q ss_pred             cC--CCEEEEeeCCCeEEEEeCCCCceee-----EcccCCCCcEEE-----------EEECCC-CCEEEEEecCCeEEEE
Q 021459          159 RD--GSLIVSGSHDGTCKIWDAGEGACLK-----TLIDDKDPAVSF-----------AKFSPN-GKFILVGTLDSTLKLW  219 (312)
Q Consensus       159 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~-----------~~~~~~-~~~l~~~~~d~~i~v~  219 (312)
                      |+  ...+++...||.+.+|-.+......     .+..+...++..           ....|. ...++.-..+|.+.+|
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence            54  4578999999999999644311110     010011111111           112233 3344444567777778


Q ss_pred             EcCCCcEEEEE-------------------------------EccCCceeEEEE--------EEEccCC-------cEEE
Q 021459          220 NYSAGKFLKIY-------------------------------TGHTNKKYCITS--------TFSVTNG-------KYIV  253 (312)
Q Consensus       220 d~~~~~~~~~~-------------------------------~~~~~~~~~~~~--------~~~~~~~-------~~l~  253 (312)
                      .+.+++.-...                               .+|+....+..+        ....+.+       .++|
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA  441 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA  441 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence            77654321100                               011111111111        1111122       3678


Q ss_pred             EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      .|...|+|.++|+.++.....+..|...|.++.|-... .|++.+.
T Consensus       442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsy  486 (1062)
T KOG1912|consen  442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSY  486 (1062)
T ss_pred             eecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeee
Confidence            99999999999999999999999999999999996553 4554443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=9.8e-09  Score=85.99  Aligned_cols=274  Identities=15%  Similarity=0.217  Sum_probs=162.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-----------CCeEEEEeC
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-----------DRTLRIWDA   93 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~v~~wd~   93 (312)
                      -+-+.|||.|.+|+|--..| |.+|--.+...++++. |+ .|.-+.|||..+||++-+.           -..++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35689999999999987765 7889777666666553 53 5888999999999998643           157999999


Q ss_pred             CCCceeeeeeecc--ccc-EEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-
Q 021459           94 RTPFDCLKTLRGH--SDF-VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-  169 (312)
Q Consensus        94 ~~~~~~~~~~~~~--~~~-v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  169 (312)
                      .++.. .+.+...  ... -.-..|+.|+++++.-..+ +|.+|+..+-..+..-...-..|....|+|.+++||-=+. 
T Consensus       290 ~tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  290 ATGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             cccch-hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            98742 3333221  111 2335789999998877664 5889987763322111112245788899999887763221 


Q ss_pred             ----CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec----------CCeEEEEEcCCCcE-EEEEEccC
Q 021459          170 ----DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL----------DSTLKLWNYSAGKF-LKIYTGHT  234 (312)
Q Consensus       170 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~-~~~~~~~~  234 (312)
                          -..+.+..+.+++.++.....+ -.-.-+.|-.+|.+|+.-..          -..+.||.++.... +....-  
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel--  444 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL--  444 (698)
T ss_pred             ccCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence                1245566666665554432111 11123457778888876321          11234444443321 111110  


Q ss_pred             CceeEEEEEEEccCCcEEEEe-e--cCCeEEEEECCc----hheeecccCCccceEEEEEcCCCceEEEeeecC-CeeEE
Q 021459          235 NKKYCITSTFSVTNGKYIVSG-S--EDNCVYVWDLQQ----KTMIQKLDGHTDSVISVTCHPTENKIASAGLDG-DRTVR  306 (312)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~-~--~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg-d~~v~  306 (312)
                       ....+...+. |.|+.+++- +  ....+.+|.+++    ..++..+..  ...+.|-|+|.|++++.++.-+ .+.+.
T Consensus       445 -ke~vi~FaWE-P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  445 -KESVIAFAWE-PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             -chheeeeeec-cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceE
Confidence             1122344444 445444332 2  235688887763    234455544  4568999999999998876532 24555


Q ss_pred             EEee
Q 021459          307 VWVQ  310 (312)
Q Consensus       307 iw~~  310 (312)
                      .+|.
T Consensus       521 F~D~  524 (698)
T KOG2314|consen  521 FYDT  524 (698)
T ss_pred             EEec
Confidence            5554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.22  E-value=3.1e-10  Score=86.06  Aligned_cols=165  Identities=17%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce-EEEeeeccCCEEEEEEccCCCeEEEEcC-----CCeE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-VHRFVGHSEGISDLAWSSDSHYICSASD-----DRTL   88 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v   88 (312)
                      +..+..|..+-.+-+.+--++.+++++.||.+.+++...... ..++..-...-.+.++...++.+.++..     -+..
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            344445666655556666677899999999999998776221 1222221222233444555666655421     2344


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEE-EeeecCcCeEEEEEcc-CCCEEE
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTR-VIRAHSMPVTSVHFNR-DGSLIV  165 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~  165 (312)
                      +.|+.+.....+.. +...+.|.+++-+|.. +.+++|+.||.+-+||.++...+. .++.|+.+++.+.|+| ++..|+
T Consensus       162 ~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  162 YANTLDPIKTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeeccccccccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            55655432111111 1122348888888854 567888899999999999875433 4578999999999999 678999


Q ss_pred             EeeCCCeEEEEeCCC
Q 021459          166 SGSHDGTCKIWDAGE  180 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~  180 (312)
                      ++++||.+-.||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999998654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.22  E-value=4.7e-07  Score=72.36  Aligned_cols=220  Identities=15%  Similarity=0.171  Sum_probs=135.7

Q ss_pred             EEEEcc-CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe-cCCCEEEEeecCCcEEEEEcCCCeEEEEee
Q 021459           69 DLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN-PQSNLIVSGSFDESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        69 ~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  146 (312)
                      +++|.+ ++.++++-...+.|+.|+..+........  . . ...+.+. ++ ..++.+...+ +.++|+.+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--P-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--S-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--C-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            578988 66677776678899999988753322222  1 1 5566677 56 4555555444 5666999886654443


Q ss_pred             e-----cCcCeEEEEEccCCCEEEEeeCC--------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE-Eec
Q 021459          147 A-----HSMPVTSVHFNRDGSLIVSGSHD--------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV-GTL  212 (312)
Q Consensus       147 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~  212 (312)
                      .     .....+.+++.|+|++.++....        |.+..++.. ++... ... .-.....++|+|+++.|.+ -+.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~-~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VAD-GLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-Eec-CcccccceEECCcchheeecccc
Confidence            3     23457899999999987776543        557777766 44322 222 1233556789999997764 567


Q ss_pred             CCeEEEEEcCCCcE----EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE-
Q 021459          213 DSTLKLWNYSAGKF----LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC-  287 (312)
Q Consensus       213 d~~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-  287 (312)
                      .+.|..|++.....    .+.+.................+|++.++....+.|.+++.. ++.+..+.-....+.+++| 
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            78999999864321    12222111111112222334578888888889999999987 7777666554557899999 


Q ss_pred             cCCCceEEEee
Q 021459          288 HPTENKIASAG  298 (312)
Q Consensus       288 ~p~~~~l~~~~  298 (312)
                      .|+.+.|...+
T Consensus       234 g~~~~~L~vTt  244 (246)
T PF08450_consen  234 GPDGKTLYVTT  244 (246)
T ss_dssp             STTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            46656555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=2.4e-10  Score=98.49  Aligned_cols=245  Identities=20%  Similarity=0.325  Sum_probs=154.4

Q ss_pred             ceEEEEECCCC--CEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCc
Q 021459           24 AVSCVKFSNDG--TLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      .|-.+.|+|..  .+-+.......-.+|++..   ...-..+.+|..+|+.+-|+|+. ..+++++.|-.+..||++.+.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            35557787754  3434444455667887653   23344567899999999999975 589999999999999999876


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKI  175 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  175 (312)
                      ........-......++|+.....+++.+....|.+||++.|. .+..++.|-..++.++|.. -...+.+++.|++++.
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            6655544444456778898755555566777789999998765 4456677777888888765 2346788999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCC----------CcEEEEEEccCCceeEEEE-
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSA----------GKFLKIYTGHTNKKYCITS-  242 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-  242 (312)
                      ||..............+..+...++-|-|+-..+.  -.+..+.+++.++          .+.+..+.+|......... 
T Consensus       229 w~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR  308 (1081)
T KOG0309|consen  229 WDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWR  308 (1081)
T ss_pred             ecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhh
Confidence            99765432211111122333334455544322221  1122344443322          3456777888764311100 


Q ss_pred             -----EEE-ccCCcEEEEeecCCeEEEEECCc
Q 021459          243 -----TFS-VTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       243 -----~~~-~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                           .+. ....-.|+|-+.|..+++|.+.+
T Consensus       309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                 000 01123599999999999998754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.1e-08  Score=85.63  Aligned_cols=193  Identities=17%  Similarity=0.332  Sum_probs=129.4

Q ss_pred             cccceEEEEECCCC--CEEEE-----EeCCCeEEEEeCCCcceE-----EEeeeccCCEEEEEEccCCC-eEEEE--cCC
Q 021459           21 HSRAVSCVKFSNDG--TLLAS-----ASLDKTVIIWSASSLALV-----HRFVGHSEGISDLAWSSDSH-YICSA--SDD   85 (312)
Q Consensus        21 h~~~v~~~~~s~~~--~~l~t-----~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~l~~~--~~d   85 (312)
                      |...|+.+.+||..  ..+|+     .|.-..+++|...-...-     ..+. ..+. ..+.|++-|+ +|+.+  .-|
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeec
Confidence            67889999999863  34554     455678999976622111     1111 1122 3578888776 22222  223


Q ss_pred             ---------CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEe--ecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           86 ---------RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG--SFDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        86 ---------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                               .++++++++ +..+...+. -.++|.++.|+|+++.++.+  -.=-.+.+||++- ..+.  ....++-++
T Consensus       242 ktn~SYYGEq~Lyll~t~-g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~--df~egpRN~  316 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQ-GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF--DFPEGPRNT  316 (566)
T ss_pred             CCCccccccceEEEEEec-CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE--eCCCCCccc
Confidence                     357777776 334333333 35799999999999876554  3346789999873 3333  334567788


Q ss_pred             EEEccCCCEEEEeeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec------CCeEEEEEcCC
Q 021459          155 VHFNRDGSLIVSGSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL------DSTLKLWNYSA  223 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~  223 (312)
                      +-|+|.|++++.++-+   |.+.+||..+.+.+..+.   ....+...|+|||.++++++.      |+.++||++..
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999999999887754   789999999876665553   233566789999999999864      67899999743

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=2.4e-09  Score=83.50  Aligned_cols=208  Identities=22%  Similarity=0.400  Sum_probs=136.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeecc------------CCEEEEEEccCCC--eEEE
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----LVHRFVGHS------------EGISDLAWSSDSH--YICS   81 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~   81 (312)
                      -.+.|+++.|...|.+|++|...|.|.+|.-+...     ....+++|.            +.|..+.|..++.  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999655432     122244443            3477788876542  4444


Q ss_pred             EcCCCeEEEEeCCCCc-----------------e-------------------ee----e--eeecccccEEEEEEecCC
Q 021459           82 ASDDRTLRIWDARTPF-----------------D-------------------CL----K--TLRGHSDFVFCVNFNPQS  119 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~-----------------~-------------------~~----~--~~~~~~~~v~~~~~~~~~  119 (312)
                      ...|++|++|.+....                 .                   .+    .  ....|.-.+.+++++.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            5689999999774210                 0                   00    0  012455667889999988


Q ss_pred             CEEEEeecCCcEEEEEcCCCe---EEEEeeecC-----cCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCcee------
Q 021459          120 NLIVSGSFDESIRIWEVKTGK---CTRVIRAHS-----MPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACL------  184 (312)
Q Consensus       120 ~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~------  184 (312)
                      ..++++. |-.|.+|++.-..   .+..++.|.     .-|++..|+|.. ..+.-.+..|.|++-|+|+...-      
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8888764 6679999876322   223334443     237788999954 45666778899999999854321      


Q ss_pred             e---------EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EEEEE
Q 021459          185 K---------TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FLKIY  230 (312)
Q Consensus       185 ~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~  230 (312)
                      .         .+....-..++.+.|+++|+++++-. --+|++||.+..+ +++++
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi  318 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceee
Confidence            0         01111223566788999999988654 3589999987653 45554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=1.1e-07  Score=90.31  Aligned_cols=236  Identities=11%  Similarity=0.103  Sum_probs=145.3

Q ss_pred             EEEEccC-CCeEEEEcCCCeEEEEeCCCCceeeeeeec--c------------cccEEEEEEecCCCEEEEee-cCCcEE
Q 021459           69 DLAWSSD-SHYICSASDDRTLRIWDARTPFDCLKTLRG--H------------SDFVFCVNFNPQSNLIVSGS-FDESIR  132 (312)
Q Consensus        69 ~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~s~~-~dg~i~  132 (312)
                      .+++++. +.++++-...+.|.++|.... . +....+  .            -..-..++++++++.|+.+. .+..|+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-F-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCC-E-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            5788875 556666667788999997643 2 222211  1            11235788888888766655 456799


Q ss_pred             EEEcCCCeEEEEeeec-----------------CcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccC----
Q 021459          133 IWEVKTGKCTRVIRAH-----------------SMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDD----  190 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----  190 (312)
                      ++|+.++.. ..+...                 -.....++++| ++.++++.+.++.|++||..++.... +...    
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            999877653 222110                 01235789999 56677777888999999987764321 1110    


Q ss_pred             ----------CCCcEEEEEECCCCCEEE-EEecCCeEEEEEcCCCcEEEEEEccC-------------C------ceeEE
Q 021459          191 ----------KDPAVSFAKFSPNGKFIL-VGTLDSTLKLWNYSAGKFLKIYTGHT-------------N------KKYCI  240 (312)
Q Consensus       191 ----------~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~------~~~~~  240 (312)
                                .......++++|+++.|. +-+.++.|++||+.++.......+..             .      .....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      001123467899998554 44667899999998765321111000             0      00011


Q ss_pred             EEEEEccCCcEEEEeecCCeEEEEECCchheeecc-------------cCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL-------------DGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      ... ..+++.++++-+.+++|++||..++......             .+.-.....++++++|+.+++-+  ++++|++
T Consensus       808 Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt--~Nn~Irv  884 (1057)
T PLN02919        808 GVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT--NNSLIRY  884 (1057)
T ss_pred             eee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC--CCCEEEE
Confidence            222 2356788899999999999999765443211             11123567899999998777655  5579999


Q ss_pred             Eeec
Q 021459          308 WVQD  311 (312)
Q Consensus       308 w~~~  311 (312)
                      |+.+
T Consensus       885 id~~  888 (1057)
T PLN02919        885 LDLN  888 (1057)
T ss_pred             EECC
Confidence            9863

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=1.7e-07  Score=87.44  Aligned_cols=274  Identities=13%  Similarity=0.181  Sum_probs=163.0

Q ss_pred             cceEEEEECCCCCEE--EEEeCCC--eEEEEeCCCcc---eEEEee-----eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           23 RAVSCVKFSNDGTLL--ASASLDK--TVIIWSASSLA---LVHRFV-----GHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l--~t~~~d~--~i~vw~~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      ..+...+|.+..+.+  +++....  .|.+-......   .+..+.     .....|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            456777887765543  3333322  23443322221   223332     23467999999999998989999999999


Q ss_pred             E----eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC----C-------------------CeEEE
Q 021459           91 W----DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK----T-------------------GKCTR  143 (312)
Q Consensus        91 w----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~----~-------------------~~~~~  143 (312)
                      .    +....  .+.....-+..|.+++|+||.+.++....++++.+.+..    .                   |+...
T Consensus       102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT  179 (928)
T PF04762_consen  102 VREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET  179 (928)
T ss_pred             EEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC
Confidence            8    54432  222233345689999999999999998888888766421    0                   11111


Q ss_pred             Eeee------------------------cCcCeEEEEEccCCCEEEEeeC------CCeEEEEeCCCCceeeEcccCCCC
Q 021459          144 VIRA------------------------HSMPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGEGACLKTLIDDKDP  193 (312)
Q Consensus       144 ~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~  193 (312)
                      .|++                        ....-..++|-.||++|++.+-      -..+++|+- +|...... .....
T Consensus       180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stS-E~v~g  257 (928)
T PF04762_consen  180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTS-EPVDG  257 (928)
T ss_pred             ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEecc-ccCCC
Confidence            1100                        1112346889999999998764      257899984 45543322 22233


Q ss_pred             cEEEEEECCCCCEEEEEec---CCeEEEEEcCCCcEEEEEEccC-CceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          194 AVSFAKFSPNGKFILVGTL---DSTLKLWNYSAGKFLKIYTGHT-NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .-..++|.|+|+++|+...   ...|.+|.. +|-....+.-.. .....+....+..++..||..-.|. |.+|-..+-
T Consensus       258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  258 LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            3445789999999988753   346777763 443333333221 1112234445567899999877665 999988764


Q ss_pred             he--eecccC-CccceEEEEEcCCC-ceEEEeeecCC
Q 021459          270 TM--IQKLDG-HTDSVISVTCHPTE-NKIASAGLDGD  302 (312)
Q Consensus       270 ~~--~~~~~~-h~~~v~~l~~~p~~-~~l~~~~~dgd  302 (312)
                      .-  -+.+.- ....+..+.|||.. ..|...+.+|.
T Consensus       336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~  372 (928)
T PF04762_consen  336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ  372 (928)
T ss_pred             EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence            32  233321 12345569999965 44665554443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=5.7e-08  Score=83.20  Aligned_cols=191  Identities=14%  Similarity=0.102  Sum_probs=119.2

Q ss_pred             ceEEEEECCCCCE-EEEEeC---CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCC--CeEEEEeCCCC
Q 021459           24 AVSCVKFSNDGTL-LASASL---DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDD--RTLRIWDARTP   96 (312)
Q Consensus        24 ~v~~~~~s~~~~~-l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~v~~wd~~~~   96 (312)
                      .+...+|+|||+. ++..+.   +..|.++|+.+++... +....+......|+|||+.|+.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678899999984 654333   3468888988776533 32344556678899999876643 333  46777787664


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---  170 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  170 (312)
                      .  .+.+..+........|+|||+.++..+. .+  .|++.|+.+++..+.... ..  ....|+|+|+.++.....   
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCc
Confidence            2  2333333333345679999987766553 33  578888887776443321 11  124899999988766543   


Q ss_pred             ------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEEcCC
Q 021459          171 ------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWNYSA  223 (312)
Q Consensus       171 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~  223 (312)
                            ..|.+.|+.++.. +.+...  .......|+|||+.++..+.++   .+.+.++..
T Consensus       343 ~~~~~~~~I~v~d~~~g~~-~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYI-RRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             ccCCCCcEEEEEECCCCCe-EECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                  2677888877653 333222  1223467999999888765432   355566644

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=5.4e-08  Score=80.80  Aligned_cols=277  Identities=19%  Similarity=0.254  Sum_probs=169.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--------------
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--------------   86 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------   86 (312)
                      -.-++..++|||.|.+|++.... -|.+|....+..+.++. | ..|..+.|+|.+++|.+-+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            45688899999999999987665 48899888776554443 3 4688999999999999865433              


Q ss_pred             -eEEEEeCCCCceeeeeeeccccc--EE-EEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeee-cCcCeEEEEEccC
Q 021459           87 -TLRIWDARTPFDCLKTLRGHSDF--VF-CVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRA-HSMPVTSVHFNRD  160 (312)
Q Consensus        87 -~v~~wd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~~~~  160 (312)
                       .+.+||..++ ..+..+.+....  .+ -+.|+-+.++++-. -...++++++ ++... ..+.. ....+....|+|.
T Consensus       108 n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         108 NNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             CceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence             4899999875 444444443333  33 46677777665543 2346899997 33211 11111 1245778888886


Q ss_pred             CC--EEE-----EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-----------cCCeEEEEEcC
Q 021459          161 GS--LIV-----SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-----------LDSTLKLWNYS  222 (312)
Q Consensus       161 ~~--~l~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~d~~i~v~d~~  222 (312)
                      ++  .|+     ..+..+.+++|.+..+..+.+..--. ..-..+.|.+.|++|++-.           .+..+++++++
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence            43  333     24567789999888666544321111 1123356888888776531           12457777776


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCcE-EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGKY-IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      . +.++......+..  ...++.+...++ +++|-.+-.+.++|++.. +...+.  ++.=+.+-|+|.+++++.+|.|.
T Consensus       264 e-~~i~V~~~~~~pV--hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         264 E-RSIPVEKDLKDPV--HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             c-cccceeccccccc--eeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCc
Confidence            3 3333322222222  233444333333 445567888999998765 333322  33346677888888888887765


Q ss_pred             C-eeEEEEee
Q 021459          302 D-RTVRVWVQ  310 (312)
Q Consensus       302 d-~~v~iw~~  310 (312)
                      - +.+.+|+.
T Consensus       338 l~gni~i~~~  347 (561)
T COG5354         338 LQGNIEIFDP  347 (561)
T ss_pred             cccceEEecc
Confidence            3 56666664

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.14  E-value=3.9e-08  Score=75.28  Aligned_cols=202  Identities=12%  Similarity=0.079  Sum_probs=133.3

Q ss_pred             EEEECCC-----CCEEEEEeCCCeEEEEeCCCcceE-EEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCcee
Q 021459           27 CVKFSND-----GTLLASASLDKTVIIWSASSLALV-HRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        27 ~~~~s~~-----~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      .+.|-|-     -.+||.||..|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.++....  
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s--  149 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS--  149 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc--
Confidence            3455552     357899999999999988765432 222333333322111111 2345667888888888875431  


Q ss_pred             eeeeecccc--cEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEee-ecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          100 LKTLRGHSD--FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIR-AHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       100 ~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      .+ ...|..  .+.++++++|++++++.+....|..|.+....  ...... .....-.+..|+.....+|++..||.+.
T Consensus       150 ~~-~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  150 NK-FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA  228 (344)
T ss_pred             cc-ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence            11 112333  37889999999999999999999999886432  222122 2233346788999999999999999999


Q ss_pred             EEeCCCCceeeE----cccCCCCcEEEEEECCCCC--EEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          175 IWDAGEGACLKT----LIDDKDPAVSFAKFSPNGK--FILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       175 iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      |||++.......    ...++.+.+..+.|++-|.  +|+..-.-+.+.+.|++++.....+.
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            999987543221    2234677889999998653  55555556789999999987655543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=4.2e-07  Score=77.91  Aligned_cols=183  Identities=12%  Similarity=0.124  Sum_probs=114.9

Q ss_pred             cEEEEEEecCCCE-EEEeecC---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCC--CeEEEEeCCCC
Q 021459          109 FVFCVNFNPQSNL-IVSGSFD---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHD--GTCKIWDAGEG  181 (312)
Q Consensus       109 ~v~~~~~~~~~~~-l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~  181 (312)
                      ......|+||++. ++..+.+   ..|.++|+.+++...... .........|+|||+.++. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 5544433   468899998887655433 3444566789999987654 3333  46777788766


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      .. ..+... ........|+|||+.|+..+.. +  .|++.|+.+++..+......   ..  . ...++|+.|+..+..
T Consensus       268 ~~-~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~--~-~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        268 TL-TQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NN--S-SVSTYKNYIVYSSRE  339 (419)
T ss_pred             cE-EEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cC--c-eECCCCCEEEEEEcC
Confidence            53 333222 2222334699999988776532 2  68888888777644432111   11  1 334778877665443


Q ss_pred             ---------CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459          259 ---------NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       259 ---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                               ..|.+.|+..+.. ..+.... ......|+|+|+.++..+.++.
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCC
Confidence                     3688888877654 3333221 2235789999998887776654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=6.3e-08  Score=74.17  Aligned_cols=253  Identities=12%  Similarity=0.029  Sum_probs=145.8

Q ss_pred             eCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           41 SLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSS-----DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        41 ~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      +....+.+|+..+..  .+..+       ..+.|.|     .-.+|+.|+..|...+|...+....++....|...|.-+
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~  121 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV  121 (344)
T ss_pred             cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence            344567777765433  22222       2244444     345899999999999999876433333333333322111


Q ss_pred             EEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC-c-eeeEcccC
Q 021459          114 NFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG-A-CLKTLIDD  190 (312)
Q Consensus       114 ~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~-~~~~~~~~  190 (312)
                      .-..+ ...+..++.|.++++.++.-+..............+++++++++++++.+....|..|.+... + ..+.....
T Consensus       122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~  201 (344)
T KOG4532|consen  122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP  201 (344)
T ss_pred             hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence            11111 123566788888888887654332222222234788999999999999999999999877643 2 22222222


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc--cCCceeEEEEEEEccCC--cEEEEeecCCeEEEEEC
Q 021459          191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG--HTNKKYCITSTFSVTNG--KYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~  266 (312)
                      ....-.+..|+.....+|++..||++.|||++..........  .+.+.-.+..+.+.+.|  ++|.-.-.-+.+++.|+
T Consensus       202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence            223344567999999999999999999999986543221111  01111123333222222  34444455678999999


Q ss_pred             Cchheeeccc-------CCc-cceEEEEEcCCCceEEEeeec
Q 021459          267 QQKTMIQKLD-------GHT-DSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       267 ~~~~~~~~~~-------~h~-~~v~~l~~~p~~~~l~~~~~d  300 (312)
                      ++....+.+.       .|. ..+..-.|+.++...-+.+.+
T Consensus       282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             ccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            8875544332       232 336666677666555555443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.11  E-value=4.8e-07  Score=71.95  Aligned_cols=218  Identities=20%  Similarity=0.174  Sum_probs=132.9

Q ss_pred             CCeEEEEeCCCcceEEEeeeccCCEEEEE--EccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           43 DKTVIIWSASSLALVHRFVGHSEGISDLA--WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        43 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      +|.|..+|..+++.+.+... ........  ..+++..+++++.++.+..||..++.. +-.... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-ccccccee-eeccc
Confidence            68899999999988877653 11122222  233566777778999999999988743 322221 11111111 22355


Q ss_pred             EEEEeecCCcEEEEEcCCCeEEEEe-eecC--c-CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC---
Q 021459          121 LIVSGSFDESIRIWEVKTGKCTRVI-RAHS--M-PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP---  193 (312)
Q Consensus       121 ~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~--~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---  193 (312)
                      .++.+..++.|..+|..+|+.+... ....  . .........++..++.+..++.+..+|+.+|+.+-........   
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            6677778889999999999887763 3221  1 1122233334778888888999999999999886555332211   


Q ss_pred             c------EEEEEECCCCCEEEEEecCCe-EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          194 A------VSFAKFSPNGKFILVGTLDST-LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       194 ~------~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .      ........++ .+.+++.++. +.+ |..+++.+-  +.....   ...... ..+..|+.++.+|.|..||+
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~---~~~~~~-~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISG---IYSLPS-VDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS----ECECEE-CCCTEEEEEETTTEEEEEET
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCC---ccCCce-eeCCEEEEEeCCCEEEEEEC
Confidence            1      1122223344 6777777775 555 999998553  222222   111122 45667777779999999999


Q ss_pred             Cchhee
Q 021459          267 QQKTMI  272 (312)
Q Consensus       267 ~~~~~~  272 (312)
                      ++++..
T Consensus       230 ~tG~~~  235 (238)
T PF13360_consen  230 KTGKVV  235 (238)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            988654

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=2.9e-09  Score=85.59  Aligned_cols=162  Identities=18%  Similarity=0.280  Sum_probs=107.4

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee--cccccEEEEEEecCCCEEEEeecCCcE---EEEEcCCCeE
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSNLIVSGSFDESI---RIWEVKTGKC  141 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i---~~wd~~~~~~  141 (312)
                      ...+..++.++++|.+..+....+++.....+..+...  .-...-.++.+..+......+...|.+   .+|....+.+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44456778889999988888766666543322111111  111222344444444544444444444   4444444433


Q ss_pred             EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                       ..+-+|-.-++.++++||+++++++..|..|++-.......+..+...|..-++.++.-++ ..|++++.|++|++||+
T Consensus       145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence             3445788889999999999999999999999997776666666666655555666666554 56899999999999999


Q ss_pred             CCCcEEEEE
Q 021459          222 SAGKFLKIY  230 (312)
Q Consensus       222 ~~~~~~~~~  230 (312)
                      .+++.+..+
T Consensus       223 ~sgk~L~t~  231 (390)
T KOG3914|consen  223 TSGKLLDTC  231 (390)
T ss_pred             ccCCccccc
Confidence            999877554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=6.2e-07  Score=69.66  Aligned_cols=231  Identities=16%  Similarity=0.249  Sum_probs=127.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccC---CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSE---GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ++.+++|++||.- .|..|.+-.....  ..+.+..-.++   .=..++|+||+.+||.+...|+|+++|+... + +..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~-lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-E-LFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-e-eEE
Confidence            5677899988876 5667888765432  22233332222   2357999999999999999999999998642 1 111


Q ss_pred             eec-------ccccEEEEEEecC------CCEEEEeecCCcEEEEEcCCC-----eEEEEee--e-cCcCeEEEEEccCC
Q 021459          103 LRG-------HSDFVFCVNFNPQ------SNLIVSGSFDESIRIWEVKTG-----KCTRVIR--A-HSMPVTSVHFNRDG  161 (312)
Q Consensus       103 ~~~-------~~~~v~~~~~~~~------~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~--~-~~~~v~~~~~~~~~  161 (312)
                      +..       -...|..+.|-+.      ...|+.-..+|.++-|-+..+     +....+.  . ....|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            111       1234555555432      235777788888887765322     2222332  2 35579999999998


Q ss_pred             CEEEEeeCCCe-----------EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          162 SLIVSGSHDGT-----------CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       162 ~~l~~~~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      ++|++|+....           +..|.+-++.          +....+ .+.+...-......   .+|.+-+   .+.+
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyyk~v-~~~~~~~~~~~~~~---~~~~~~~---~~~f  222 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----------PYYKQV-TSSEDDITASSKRR---GLLRIPS---FKFF  222 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCC----------CcEEEc-cccCcccccccccc---ceeeccc---eeee
Confidence            88887765432           1112111110          001000 01001110011111   1222211   1222


Q ss_pred             EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459          231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH  278 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  278 (312)
                      .........+..+...|++.+||+...+|.|.+|++.+-.+......+
T Consensus       223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            222222223333445689999999999999999999887666655443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=6.8e-11  Score=103.80  Aligned_cols=201  Identities=18%  Similarity=0.309  Sum_probs=144.5

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--eEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--TLR   89 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~   89 (312)
                      ++.++++..|+..-+|++|+-+.+.|+.|+-.|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-.  -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            455677888999999999999999999999999999999999999999999999999999999998776654433  467


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee----cCcCeEEEEEccCCCEEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~  165 (312)
                      +|++........++.    .-.++.|+.....-+.|.......+||+.++..+.++-.    ....-++..|+|+..+++
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            898865433333332    235677876543334444445688999999876554211    112236788999988876


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                         .||  .+||.+..+.++.+-.-.  ....-.|+|+|..++.-+     .|||+++-+.++
T Consensus      1247 ---ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             ---eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence               455  689999887666552211  122235899999888754     489988766544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.07  E-value=4.3e-09  Score=84.63  Aligned_cols=159  Identities=20%  Similarity=0.308  Sum_probs=108.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEeeeccCCEEEEEEccCCCeEEEEcCCC---eEEEEeCCCCcee
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRFVGHSEGISDLAWSSDSHYICSASDDR---TLRIWDARTPFDC   99 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~wd~~~~~~~   99 (312)
                      ..+..+|++++||.+..++...++++.....   +.....-...-+.+.+..+......+..-|   .+.+|....  ..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~  143 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GR  143 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cC
Confidence            3455778899999888877766666543322   111112223334555655555554444444   444454432  23


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      ...+-||-..+..++++||+++++++..|..|++-....-..+..+ -+|..-|..++.-++ ..|++++.|+++++||.
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            4445689999999999999999999999999998766554444444 368888999988754 56899999999999999


Q ss_pred             CCCceeeEc
Q 021459          179 GEGACLKTL  187 (312)
Q Consensus       179 ~~~~~~~~~  187 (312)
                      .+++.+.++
T Consensus       223 ~sgk~L~t~  231 (390)
T KOG3914|consen  223 TSGKLLDTC  231 (390)
T ss_pred             ccCCccccc
Confidence            999887554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.5e-09  Score=85.83  Aligned_cols=214  Identities=19%  Similarity=0.226  Sum_probs=150.2

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcceEEEeeec--cCCEEEEEEc-cCC---CeEE-EEcC
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLALVHRFVGH--SEGISDLAWS-SDS---HYIC-SASD   84 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~-~~~---~~l~-~~~~   84 (312)
                      ...+.+..|-..|.+++.+.++.++.|.+. |+.++++|+++..+...++..  ++.   +.|. ..|   ..|+ +...
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeeccc
Confidence            344556778889999999999999999777 999999999887665443321  222   2222 223   1333 3346


Q ss_pred             CCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC------CeEE---------EEeeec
Q 021459           85 DRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT------GKCT---------RVIRAH  148 (312)
Q Consensus        85 d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~---------~~~~~~  148 (312)
                      ++.+.++|-.... +....-+-|..+|.++.+++-+..+++....|-|.-|....      .+..         ..+...
T Consensus       121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA  200 (558)
T ss_pred             CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence            7899999976543 22333445899999999999999999999999999998762      1110         011112


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC--------------------------------CCCcEE
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD--------------------------------KDPAVS  196 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~  196 (312)
                      +....++.|+|++..+.+-+.|..|++++..++...+.+...                                ......
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~  280 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT  280 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence            334678999999999999999999999999887654333110                                011123


Q ss_pred             EEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       197 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      .+.|+..|++|+.++.=| |+++++.+++..+++
T Consensus       281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            356999999999987664 899999988877665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=1.2e-07  Score=82.71  Aligned_cols=243  Identities=14%  Similarity=0.138  Sum_probs=162.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC------------CeEEEEcCCCeE
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS------------HYICSASDDRTL   88 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~v   88 (312)
                      |...-.++.|+|.| +||-|+- ..|.|-|..+.+.+..+..|+..|+++.|.|..            -.||++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            33446678899877 5555543 578888999999999999999999999997631            256777778999


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEec---CC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCE
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNP---QS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSL  163 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  163 (312)
                      .+||.... ..+..+..|.+.+..++|-+   +. ..|++-....+|.+|+..+|+..-..........|+.+.| |.+.
T Consensus        92 il~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   92 ILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH  170 (1062)
T ss_pred             EEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence            99998764 23444566788888888866   33 4677777778999999999987766555555677888888 5566


Q ss_pred             EEEeeCCCeEEEEeCCC-Cc-----eeeEcccCCC-------------------CcE------EEEEECCCCCEEEEEec
Q 021459          164 IVSGSHDGTCKIWDAGE-GA-----CLKTLIDDKD-------------------PAV------SFAKFSPNGKFILVGTL  212 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~-~~-----~~~~~~~~~~-------------------~~~------~~~~~~~~~~~l~~~~~  212 (312)
                      +..-+..|.+.+-+.-. .+     ....+..++.                   ...      ...+|+|.-+.++....
T Consensus       171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~  250 (1062)
T KOG1912|consen  171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF  250 (1062)
T ss_pred             EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence            66666667666654321 10     0011111100                   000      01346777666666667


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ...+.++|++-...+....-..+....+.... .++.+.|.++..||.+.+|-.+
T Consensus       251 prellv~dle~~~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ccceEEEcchhhceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEee
Confidence            88899999987776665543333222233222 2445689999999999999654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.8e-09  Score=85.66  Aligned_cols=207  Identities=23%  Similarity=0.286  Sum_probs=141.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWDART   95 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~   95 (312)
                      -|.+.|+-+.. ...+++.+++.||.++.|--..   .+.+..+..|...|.+++.+-++.++++.+. |..++++|+++
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            37788887654 3578999999999999996543   2344456678888899999999999999777 99999999875


Q ss_pred             Cceeeee--eecccccEEEEEEecCC--CEEE-EeecCCcEEEEEcCCCeE--EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           96 PFDCLKT--LRGHSDFVFCVNFNPQS--NLIV-SGSFDESIRIWEVKTGKC--TRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        96 ~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~-s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      - ..+..  +.--.+.+.+ ..++..  ..++ +.-.+|.|.++|-....+  ...-+-|..+|..+.+.+-+..+++..
T Consensus        86 ~-DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   86 F-DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             c-chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            3 21111  1111222221 122211  1233 334568899999765443  233346889999999999999999999


Q ss_pred             CCCeEEEEeCCC------CceeeEcc--------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          169 HDGTCKIWDAGE------GACLKTLI--------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       169 ~d~~i~iwd~~~------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      ..|.|.-|....      ......+.        .........+.++|++..+.+-+.|..|+++++.+++.++.
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            999999998763      11110110        01123345677999999999999999999999998876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.04  E-value=4.4e-06  Score=66.76  Aligned_cols=215  Identities=18%  Similarity=0.161  Sum_probs=132.1

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEc-cCCCeEEEEcCCCeEEEEeCCCCce-eeeee
Q 021459           27 CVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS-SDSHYICSASDDRTLRIWDARTPFD-CLKTL  103 (312)
Q Consensus        27 ~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~  103 (312)
                      ++.|.+ ++.++++--..+.|..|+..+++... +.  ......+++. +++.+ +.+...+ +.++|..+... .+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~--~~~~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID--LPGPNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE--SSSEEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee--cCCCceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 66777776678999999988775532 22  1226778888 56554 4444444 55668776422 12222


Q ss_pred             e--c-ccccEEEEEEecCCCEEEEeecC--------CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCC
Q 021459          104 R--G-HSDFVFCVNFNPQSNLIVSGSFD--------ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDG  171 (312)
Q Consensus       104 ~--~-~~~~v~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~  171 (312)
                      .  . .......+++.|+|++.++....        |.|..++.. ++....... -...+.++|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccc
Confidence            1  1 23456789999999977765543        457777766 554433332 34468999999998765 566778


Q ss_pred             eEEEEeCCCCce----eeEcccCCC--CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          172 TCKIWDAGEGAC----LKTLIDDKD--PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       172 ~i~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      .|..+++.....    .+.+.....  .....++++.+|++.++....+.|.++|.+ |+.+..+......  ...+++.
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~--~t~~~fg  233 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR--PTNCAFG  233 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS--EEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC--EEEEEEE
Confidence            888888753221    111211111  235667899999988888889999999976 8877777655332  3333443


Q ss_pred             ccCCcE
Q 021459          246 VTNGKY  251 (312)
Q Consensus       246 ~~~~~~  251 (312)
                      .++.+.
T Consensus       234 g~~~~~  239 (246)
T PF08450_consen  234 GPDGKT  239 (246)
T ss_dssp             STTSSE
T ss_pred             CCCCCE
Confidence            344333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.03  E-value=3.9e-06  Score=67.13  Aligned_cols=204  Identities=14%  Similarity=0.228  Sum_probs=135.7

Q ss_pred             eEEEEECC-CCCEEEEEeCCCe-EEEEeCCCcceEEEeeeccCCEE--EEEEccCCCeEEEEcC-----CCeEEEEeCCC
Q 021459           25 VSCVKFSN-DGTLLASASLDKT-VIIWSASSLALVHRFVGHSEGIS--DLAWSSDSHYICSASD-----DRTLRIWDART   95 (312)
Q Consensus        25 v~~~~~s~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----d~~v~~wd~~~   95 (312)
                      ...++.+| +...++.+..-|. ..+||..+++....+....+.-.  .-+|++||++|++.-.     .|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            45678888 5566777877765 57899999888776643322211  3579999999998633     47899999986


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeec------------------CCcEEEEEcCCCeEEEEee----ecCcCeE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF------------------DESIRIWEVKTGKCTRVIR----AHSMPVT  153 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------------dg~i~~wd~~~~~~~~~~~----~~~~~v~  153 (312)
                      ....+..+..|.-.-..+.+.||++.|+.+..                  +.++..-|..+|+.+....    -|+..+.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            56666666655433445778899977766532                  2345566777887766532    3677899


Q ss_pred             EEEEccCCCEEEEeeCCCe-------EEEEeCCCCceeeEcc------cCCCCcEEEEEECCCCCEEEEEe-cCCeEEEE
Q 021459          154 SVHFNRDGSLIVSGSHDGT-------CKIWDAGEGACLKTLI------DDKDPAVSFAKFSPNGKFILVGT-LDSTLKLW  219 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~  219 (312)
                      .+++.++|..++..-..|.       +-+++....  +..+.      .....-+..+++++++.++++.+ .-+.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999999987666554442       334433221  11111      11123466788999998886665 45789999


Q ss_pred             EcCCCcEEEEE
Q 021459          220 NYSAGKFLKIY  230 (312)
Q Consensus       220 d~~~~~~~~~~  230 (312)
                      |..+++.+...
T Consensus       245 d~~tg~~~~~~  255 (305)
T PF07433_consen  245 DAATGRLLGSV  255 (305)
T ss_pred             ECCCCCEeecc
Confidence            99999887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.03  E-value=7.8e-07  Score=76.26  Aligned_cols=258  Identities=12%  Similarity=0.070  Sum_probs=146.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccccc----
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF----  109 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~----  109 (312)
                      +..++.++.++.+..+|..+++.+.+.........+...  .+..++.+..++.+..+|..++...-+........    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            445667778899999999999887765533221111111  24466677788999999998865432221110000    


Q ss_pred             EEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-------CeEEEEEcc--CCCEEEEeeCCCeEEEEeCCC
Q 021459          110 VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-------PVTSVHFNR--DGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       110 v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ..+...  .+..++.++.+|.+...|..+|+..-..+....       ....+..+|  .+..++.++.+|.+..+|..+
T Consensus       198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence            001111  124566777889999999988876543321100       000111122  244667777889999999998


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      ++.+-+....  ....   ....+..+.+++.+|.+..+|..+++.+-.........  .. .... .+..++.++.+|.
T Consensus       276 G~~~W~~~~~--~~~~---~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~-sp~v-~~g~l~v~~~~G~  346 (394)
T PRK11138        276 GQIVWKREYG--SVND---FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL--LT-APVL-YNGYLVVGDSEGY  346 (394)
T ss_pred             CCEEEeecCC--CccC---cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc--cc-CCEE-ECCEEEEEeCCCE
Confidence            8765332111  1111   11245677778889999999999887643322111110  00 0001 2456788899999


Q ss_pred             EEEEECCchheeecccCCccceEE-EEEcCCCceEEEeeecCCeeEEEE
Q 021459          261 VYVWDLQQKTMIQKLDGHTDSVIS-VTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       261 i~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      |.+.|..+++.+.+.+-....+.+ -..  .+..|..++.||  .|..+
T Consensus       347 l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G--~l~~~  391 (394)
T PRK11138        347 LHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDG--TVYAI  391 (394)
T ss_pred             EEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCc--eEEEE
Confidence            999999998877665432222221 112  345777777665  55544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.01  E-value=1.4e-08  Score=77.38  Aligned_cols=152  Identities=17%  Similarity=0.263  Sum_probs=97.4

Q ss_pred             EccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-----CCcEEEEEcCCCeEEEEee
Q 021459           72 WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-----DESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        72 ~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~~~~~~~~~  146 (312)
                      .+-.++.++++..||.+-+.+.+...............-.+.++-..++.+.++..     -+..+.|+++..+....-.
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            33456678899999999999876532221111111111112222233455544432     2456677776554333222


Q ss_pred             ecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCC
Q 021459          147 AHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       147 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      .....|.+++-+|. ..++++|+.||.+-+||.++......+...++..+.-+.|+| ++..|++++.||.+..||..+
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            22334888888884 456778899999999999988766666666677777777887 567899999999999999654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.01  E-value=9.7e-07  Score=73.10  Aligned_cols=145  Identities=17%  Similarity=0.169  Sum_probs=112.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCC-eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDK-TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      .+|...|.-..+.-+++-++.|..|| .+-|++..+++. .++...-+.|.++..+++|++++.+.....+.+.|+.++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            46788899889988888899999998 899999887765 4566667889999999999999999888889899998864


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      ..+ .-+...+.|....|+|++++++-+-.+|    .|+++|+..++....... ...=.+-+|.|++++|.-
T Consensus       435 v~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         435 VRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             eeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCcEEEE
Confidence            322 2233456789999999999999877665    589999998876544322 222245578889887653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.99  E-value=2.4e-08  Score=88.35  Aligned_cols=182  Identities=15%  Similarity=0.274  Sum_probs=131.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      +..++-|+-...+..+|..+.+......-....|.-++  .+++++++|...|+|.+-|.++ .+.+.++..|.+.+..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeeccccceeee
Confidence            34566666667777788887766554443344454444  3678999999999999999877 57788999999988765


Q ss_pred             EEecCCCEEEEeec---------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeC---CC
Q 021459          114 NFNPQSNLIVSGSF---------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDA---GE  180 (312)
Q Consensus       114 ~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~---~~  180 (312)
                        +-.|+.|+++|.         |..|+|||++..+.+..++.+..+ .-+.|+|. ...+++++..|...+-|.   .+
T Consensus       224 --Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 --DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             --eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence              556899999986         456899999987766655544444 34567773 356888899999999983   33


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      ...-........+.+....++++++.++.|..+|.|.+|.-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            22222222233444777889999999999999999999973

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.97  E-value=8e-07  Score=69.05  Aligned_cols=195  Identities=15%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-------ccCCEEEEEEccCC------CeEEEEcCCCeEEEEe
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-------HSEGISDLAWSSDS------HYICSASDDRTLRIWD   92 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~v~~wd   92 (312)
                      ..++||||+.+||.+...|+|+++|+...++ ..+..       -..+|..+.|.+..      ..|++-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            3589999999999999999999999876433 22221       13467777775432      2455666788777665


Q ss_pred             CCC----Cceeeeee---ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE---ccCCC
Q 021459           93 ART----PFDCLKTL---RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF---NRDGS  162 (312)
Q Consensus        93 ~~~----~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~~  162 (312)
                      +..    +.+....+   ..+...|.++.|+|..++|+.|+....      +.+.    -++....+++-..   .|..+
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEE
Confidence            421    11222222   124567999999999998888775432      0000    0001111111111   11111


Q ss_pred             EEEEeeCCC------eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          163 LIVSGSHDG------TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       163 ~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      . ++...|+      +..+|.+.+.... .........+..+..+|||..||+...+|.|.+|++.+-+..+.+..+
T Consensus       196 ~-v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  196 Q-VTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             E-ccccCccccccccccceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            1 1111111      1122322221111 112233455677889999999999999999999999877665555433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=3.5e-09  Score=83.66  Aligned_cols=148  Identities=16%  Similarity=0.276  Sum_probs=110.7

Q ss_pred             EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc----eeeeeeecccccEEEE
Q 021459           38 ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF----DCLKTLRGHSDFVFCV  113 (312)
Q Consensus        38 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~----~~~~~~~~~~~~v~~~  113 (312)
                      ++.|.+..+-+-+.+++-... + ..++.|.++.|...+++++.|+.+|.|..+|++...    .+...+ -|+..|.++
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            445555666676777664322 2 245678888999889999999999999999998642    222233 378888888


Q ss_pred             EEec-CCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcC--eEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459          114 NFNP-QSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMP--VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       114 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (312)
                      ..-. ++.+|++.+.+|.|++||++.-++   +..+++|-..  -.-+...+.+..+++++.|...++|.+..+..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            7655 678899999999999999987666   7778887543  223445666778889999999999999999887665


Q ss_pred             c
Q 021459          188 I  188 (312)
Q Consensus       188 ~  188 (312)
                      .
T Consensus       385 p  385 (425)
T KOG2695|consen  385 P  385 (425)
T ss_pred             C
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.96  E-value=3.4e-09  Score=58.22  Aligned_cols=37  Identities=35%  Similarity=0.673  Sum_probs=35.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS   50 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~   50 (312)
                      ...++.+|.++|++++|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=2.2e-06  Score=68.17  Aligned_cols=189  Identities=20%  Similarity=0.138  Sum_probs=119.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc---c
Q 021459           32 NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS---D  108 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~---~  108 (312)
                      +++..+++++.++.+..||..+++.+.+... ...+.... ..++..++.+..++.++.+|..++...-.......   .
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            3567777778999999999999998877664 22221111 22455566666888999999888754333122110   1


Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC----------eEEEEEccCCCEEEEeeCCCe-EEEEe
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP----------VTSVHFNRDGSLIVSGSHDGT-CKIWD  177 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~-i~iwd  177 (312)
                      .........+++.++.+..++.|..+|+++|+.+-.......+          +..-....++ .++.++.++. +.+ |
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d  189 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D  189 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence            1222233334778888888999999999999987766553322          1122222345 6666666775 555 9


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      ..+++..-+..  . ..... ....++..|++++.++.|..||+.+++.+-
T Consensus       190 ~~tg~~~w~~~--~-~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  190 LATGEKLWSKP--I-SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTTTEEEEEEC--S-S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEec--C-CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            99987543221  1 11211 145677788888899999999999998653

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.5e-07  Score=76.11  Aligned_cols=245  Identities=16%  Similarity=0.164  Sum_probs=135.4

Q ss_pred             eeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeC
Q 021459           16 KTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDA   93 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~   93 (312)
                      +.+-.|...|..++|||..+ ++..++.+..|+|.|+++......+..+ ..+++++|..+ .++|..|...|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            35667889999999999777 7888999999999999998888888777 78999999986 468899999999999999


Q ss_pred             CCCceeeeeeec--ccccEEEEEEec------CCCEEEEeecCCcEEEEEcCC--CeEEEEeee-cCcCeEEEEEccCCC
Q 021459           94 RTPFDCLKTLRG--HSDFVFCVNFNP------QSNLIVSGSFDESIRIWEVKT--GKCTRVIRA-HSMPVTSVHFNRDGS  162 (312)
Q Consensus        94 ~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~-~~~~v~~~~~~~~~~  162 (312)
                      +.+...+..+.+  ...+|..++.-+      .+.+++....+  ...|++.-  +....+++. ..+...++.+++-.+
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN  343 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence            876443332222  122344443322      23333333322  45565432  111111221 233455556655444


Q ss_pred             EEEEeeCCC-------eEEE-EeCCCCceee----EcccCCCCc---EEEEEECCCCCEEEE-EecCCeEEEEEcCCCcE
Q 021459          163 LIVSGSHDG-------TCKI-WDAGEGACLK----TLIDDKDPA---VSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       163 ~l~~~~~d~-------~i~i-wd~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~  226 (312)
                      .++.....+       .+-. -|.+.|..+-    ...+.....   -....-.++.++++. +...+++.+||..+.+.
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV  423 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence            444333221       0000 0111111110    000000000   001112334454444 44557899999999888


Q ss_pred             EEEEEccCCceeEEEEEEEc-cCCcEEEEeecCCeEEEEECC
Q 021459          227 LKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +..+.-. .+..  ...... ..+.+|++- .|..++||..+
T Consensus       424 vQ~l~~~-epv~--Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  424 VQTLALS-EPVL--DICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             eeecccC-ccee--ecceeecCCcchhhhe-ecceEEEEecC
Confidence            7766543 2222  222222 234456554 45568887643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.90  E-value=2.1e-06  Score=78.85  Aligned_cols=276  Identities=17%  Similarity=0.232  Sum_probs=149.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee-
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL-  100 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~-  100 (312)
                      .+.|.++.|.-+.+.++.+..+|.|.+-|.++..... ...-..+|.+++|+||++.++.....+++.+-+-.  ..++ 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence            3689999999999988888899999988877654422 22235789999999999999988888887665321  1111 


Q ss_pred             -eeeecc---cccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEe-----eCC
Q 021459          101 -KTLRGH---SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSG-----SHD  170 (312)
Q Consensus       101 -~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d  170 (312)
                       +.+...   .+....+-|....+. +-|+ .|.....+.... +.......+. .=..+.|--||+++++.     ...
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTq-frgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQ-FRGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             ccccccccccccccceeccccccee-eecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCc
Confidence             111000   011111222221111 1111 111111110000 0000011111 22468899999999873     333


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE---ecCCeEEEEEcCCCcEEEEEE--ccCCceeEEEEEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG---TLDSTLKLWNYSAGKFLKIYT--GHTNKKYCITSTFS  245 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~  245 (312)
                      ..|++||-. +.... ........-..+.|-|.|..+++-   +.|+.|.+|.. +|-....+.  -..+...+.. ..+
T Consensus       222 RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~-L~W  297 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEE-LAW  297 (1265)
T ss_pred             eeEEEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhe-eee
Confidence            789999965 43322 222223345567899999998885   44667888874 332211111  1111111223 334


Q ss_pred             ccCCcEEEE---eecCCeEEEEECCchhee--ecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEe
Q 021459          246 VTNGKYIVS---GSEDNCVYVWDLQQKTMI--QKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       246 ~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~  309 (312)
                      ..++..|++   ..+...|++|-+.+..-.  +.+.-.+...  +.|+|.. ..|..-..+|...++-|-
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence            467888887   566666999988764322  2222222222  7788853 344444455666666554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=8.3e-09  Score=56.61  Aligned_cols=39  Identities=44%  Similarity=0.864  Sum_probs=36.3

Q ss_pred             cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           54 LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        54 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ++++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=2.4e-09  Score=94.43  Aligned_cols=188  Identities=22%  Similarity=0.364  Sum_probs=130.7

Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC--eEEEEe
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG--TCKIWD  177 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd  177 (312)
                      .+.+..|.....|++|+.+.++|+.|+..|.|++|++.+|........|+.+++.+.-+.+|..+++.+.-.  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            455666778889999999999999999999999999999999889999999999999999999887765443  357899


Q ss_pred             CCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE-ccCCceeEEEEEEEccCCcEEEEe
Q 021459          178 AGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT-GHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      +.+- ...+++.     .-.++.|+....+-+.|+.-....+||.+++..+..+- +.....+.-....+.|...+++  
T Consensus      1174 ~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             cccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            8652 2222221     12345666655555566666678999999987665532 2111112122223335555554  


Q ss_pred             ecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                       .||  .+||.+..+.+..+...+..+.. .|||.|..++.-+
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS 1285 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec
Confidence             466  68999888777776655533222 5999999888755

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=1.5e-08  Score=80.22  Aligned_cols=161  Identities=18%  Similarity=0.301  Sum_probs=115.7

Q ss_pred             EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC-----ceeeEcccCCCCcEEE
Q 021459          123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG-----ACLKTLIDDKDPAVSF  197 (312)
Q Consensus       123 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~  197 (312)
                      ++.+.+-.|-+-|+++|-. +.+. .+..|.++.|...++++..|..+|.|..+|++.+     .+...+  .++..++.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence            4455566677888887643 2233 4567888888888899999999999999999864     222222  23455555


Q ss_pred             EEECC-CCCEEEEEecCCeEEEEEcCCCcE---EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459          198 AKFSP-NGKFILVGTLDSTLKLWNYSAGKF---LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ  273 (312)
Q Consensus       198 ~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (312)
                      +..-. ++++|.+.+.+|.|++||++.-+.   +..+++|.+....+..... +.+..++++++|-..+||.+..+.++.
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEEEEecccCceee
Confidence            55444 678999999999999999987665   8889998776544443333 445678889999999999999988887


Q ss_pred             cccC----CccceEEEEEc
Q 021459          274 KLDG----HTDSVISVTCH  288 (312)
Q Consensus       274 ~~~~----h~~~v~~l~~~  288 (312)
                      +++-    .+..+.++++.
T Consensus       383 tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  383 TIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccCCCCccccccccceehh
Confidence            7653    23356677764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.85  E-value=1.7e-05  Score=63.49  Aligned_cols=225  Identities=16%  Similarity=0.203  Sum_probs=136.5

Q ss_pred             EEEEEEcc-CCCeEEEEcCCCe-EEEEeCCCCceeeeeeecccc--cEEEEEEecCCCEEEEeec-----CCcEEEEEcC
Q 021459           67 ISDLAWSS-DSHYICSASDDRT-LRIWDARTPFDCLKTLRGHSD--FVFCVNFNPQSNLIVSGSF-----DESIRIWEVK  137 (312)
Q Consensus        67 v~~~~~~~-~~~~l~~~~~d~~-v~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~  137 (312)
                      ...++.+| ....++.+-.-|. ..+||..++.. ...+....+  ..-.-.|++||++|++.-.     .|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            34677888 4566777766664 56788876533 222221111  1113579999999998644     4789999998


Q ss_pred             -CCeEEEEeeecCcCeEEEEEccCCCEEEEeeC------------------CCeEEEEeCCCCceeeEcc---cCCCCcE
Q 021459          138 -TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH------------------DGTCKIWDAGEGACLKTLI---DDKDPAV  195 (312)
Q Consensus       138 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~---~~~~~~~  195 (312)
                       .-+.+..+..+...-..+.+.|||+.|+++..                  +-.+...|..+++.+.+..   ..+.-.+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             55666777777766677889999977776531                  1234455667777665532   2234467


Q ss_pred             EEEEECCCCCEEEEEecCCe-------EEEEEcCCCcEEEEEEccCC-----ceeEEEEEEEccCCc-EEEEeecCCeEE
Q 021459          196 SFAKFSPNGKFILVGTLDST-------LKLWNYSAGKFLKIYTGHTN-----KKYCITSTFSVTNGK-YIVSGSEDNCVY  262 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~l~~~~~dg~i~  262 (312)
                      ..++++++|..++..-..|.       |-+++  .++.+..+.....     ..|.-.+.+. .++. +.+|+-..|.+.
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEE
Confidence            78888888876655433332       22332  2332332222111     1233333443 4555 457777889999


Q ss_pred             EEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       263 iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +||..+++.+....-  ..+..|+..+++ ++++.|
T Consensus       243 ~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  243 VWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             EEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence            999999988766542  346777777776 565554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.81  E-value=1.8e-05  Score=66.74  Aligned_cols=264  Identities=20%  Similarity=0.261  Sum_probs=133.6

Q ss_pred             CCCCCEEEEEe---------CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           31 SNDGTLLASAS---------LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        31 s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      |||+++++...         ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+.+..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            68888776632         235788899998765433222 56788899999999998874 67899998766532222


Q ss_pred             eeec-------c---------cccEEEEEEecCCCEEEEeecC-CcEE--------------------------------
Q 021459          102 TLRG-------H---------SDFVFCVNFNPQSNLIVSGSFD-ESIR--------------------------------  132 (312)
Q Consensus       102 ~~~~-------~---------~~~v~~~~~~~~~~~l~s~~~d-g~i~--------------------------------  132 (312)
                      +..|       -         -+.-..+-|+||++.|+....| ..|+                                
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2222       0         0112457799999888765433 2222                                


Q ss_pred             ---EEEcCCCeEEEE-ee----ecCcCeEEEEEccCCCEEEEe--eCCC---eEEEEeCCCCceeeEcccCCCC---cEE
Q 021459          133 ---IWEVKTGKCTRV-IR----AHSMPVTSVHFNRDGSLIVSG--SHDG---TCKIWDAGEGACLKTLIDDKDP---AVS  196 (312)
Q Consensus       133 ---~wd~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~l~~~--~~d~---~i~iwd~~~~~~~~~~~~~~~~---~~~  196 (312)
                         ++|+.+++.... ..    ....-+..+.|.++++.|+..  ..+.   .+.++|..++............   ...
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence               233333332110 00    112236678888888834332  2222   3556777665432222111111   111


Q ss_pred             EEEE-CCCCC-EEEEEecCCe--EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC----eEEEEECCc
Q 021459          197 FAKF-SPNGK-FILVGTLDST--LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN----CVYVWDLQQ  268 (312)
Q Consensus       197 ~~~~-~~~~~-~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~  268 (312)
                      ...+ .+++. +|.....+|.  |.+++...+... .+....-.... ...+...++.+..++..++    .|..-++..
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~  316 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDS  316 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence            2223 35554 4444556664  555666555432 22222211111 1223333344555665532    455556662


Q ss_pred             hheeecccCCccceEEEEEcCCCceEEEee
Q 021459          269 KTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       269 ~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +.....+.........+.|+|++++++-..
T Consensus       317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  317 GGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            344455544333336899999999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=7.4e-07  Score=72.20  Aligned_cols=257  Identities=14%  Similarity=0.141  Sum_probs=138.0

Q ss_pred             EEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEE
Q 021459           46 VIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIV  123 (312)
Q Consensus        46 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~  123 (312)
                      +++.+..+.+...-+.+|...|.+++|+|..+ ++..++.+..|++.|+++. ..+.....+ ..+++++|.-|. ++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeE
Confidence            34444444444444566778899999999876 7888899999999999874 445555555 788999998754 6788


Q ss_pred             EeecCCcEEEEEcCCCeEEE-Eeee--cCcCeEEEEEc------cCCCEEEEeeCCCeEEEEeCCCC--ceeeEcccCCC
Q 021459          124 SGSFDESIRIWEVKTGKCTR-VIRA--HSMPVTSVHFN------RDGSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKD  192 (312)
Q Consensus       124 s~~~dg~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~  192 (312)
                      +|...|.|.+||++..+... .+.+  ...+|-.++.-      +-+.+++....+  ...|+..-.  ........+..
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence            88899999999998654221 1111  12334333322      223333333322  344543211  11111111112


Q ss_pred             CcEEEEEECCCCCEEEEEecC-C------eEEE-EEcCCCcEEEEEE-ccCCcee----EEEEEEEccCCcE-EEEeecC
Q 021459          193 PAVSFAKFSPNGKFILVGTLD-S------TLKL-WNYSAGKFLKIYT-GHTNKKY----CITSTFSVTNGKY-IVSGSED  258 (312)
Q Consensus       193 ~~~~~~~~~~~~~~l~~~~~d-~------~i~v-~d~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~-l~~~~~d  258 (312)
                      +........+..+.++..... .      .+-+ -|..+|..+.... .+.+...    .-...+.+++..+ +.+|.+.
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t  410 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST  410 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence            223233344433444333221 0      0111 1222333322111 1101000    0011122233344 4567778


Q ss_pred             CeEEEEECCchheeecccCCccceEEEEEcC-C-CceEEEeeecCCeeEEEEee
Q 021459          259 NCVYVWDLQQKTMIQKLDGHTDSVISVTCHP-T-ENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       259 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~-~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +.+.+||..+.+.++.+.- ..+|..+.... + +.+|++-..|   .++|+..
T Consensus       411 n~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~---~v~Iyk~  460 (463)
T KOG1645|consen  411 NELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDD---RVHIYKN  460 (463)
T ss_pred             ceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecc---eEEEEec
Confidence            8999999999999988864 47888887543 2 3466655533   6777654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=1e-05  Score=71.89  Aligned_cols=195  Identities=14%  Similarity=0.238  Sum_probs=126.3

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-EEEEEEccCCCeEEEEcCCC-----eEEEEeCCCC-----c
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSSDSHYICSASDDR-----TLRIWDARTP-----F   97 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~~wd~~~~-----~   97 (312)
                      .|++.+..++.|+.+|.|.+.+. ..+.+..++.+... |..+....+..+|++.+.|+     .+++|+++..     .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46789999999999999888763 34455677777777 44443333446787776665     4899997532     2


Q ss_pred             eeee--eeec-----ccccEEEEEEecCCCEEEEeecCCcEEEEE--cCCCeEEEE--eeecCcCeEEEEEccCCCEEEE
Q 021459           98 DCLK--TLRG-----HSDFVFCVNFNPQSNLIVSGSFDESIRIWE--VKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        98 ~~~~--~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd--~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      +++.  .+..     ...++.+++.+.+-+.++.|-.+|.|..+.  +...+-.+.  ......+|+.+++..+++.++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            3331  1111     245788899999988999999999999884  322221122  2223568999999988887332


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK  225 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  225 (312)
                      +.....|.+|.+............++....+..+++....+++++ +..+.+||.....
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            333447888888744433333455566666666777666566655 4478999875433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=4.7e-05  Score=65.40  Aligned_cols=229  Identities=10%  Similarity=0.022  Sum_probs=131.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC-CEE------EEEEcc--CCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSE-GIS------DLAWSS--DSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~------~~~~~~--~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .+..++.++.++.+.-+|..+++.+.+...... ...      .+.-.|  ++..++.++.++.+..+|.+++...-+ .
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~  146 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ-T  146 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc-c
Confidence            466777888889999999999988766532210 000      000111  355677788899999999887644322 1


Q ss_pred             ecccccEEE-EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE-EEEEcc--CCCEEEEeeCCCeEEEEeCC
Q 021459          104 RGHSDFVFC-VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT-SVHFNR--DGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       104 ~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~d~~i~iwd~~  179 (312)
                      +.. +.+.+ ...  .+..++.+..++.+.-+|.++|+.+-.......... ...-+|  .+..++.++.++.+..+|..
T Consensus       147 ~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        147 KVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             cCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            111 11111 111  234667777889999999999987755543211000 000011  12356677788999989988


Q ss_pred             CCceeeEcccCCC---Cc---EEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          180 EGACLKTLIDDKD---PA---VSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       180 ~~~~~~~~~~~~~---~~---~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      +++..-+......   ..   ......+|  .+..+.+++.+|.+.-+|..+++.+-.......  ...    . ..+..
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~----~-~~~~~  296 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV--NDF----A-VDGGR  296 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCc----E-EECCE
Confidence            8765433211000   00   00000111  245677777899999999999886543321110  001    1 12456


Q ss_pred             EEEeecCCeEEEEECCchhee
Q 021459          252 IVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      +..++.+|.+..+|..+++.+
T Consensus       297 vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             EEEEcCCCeEEEEECCCCcEE
Confidence            777888999999999887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=7.8e-07  Score=78.70  Aligned_cols=190  Identities=11%  Similarity=0.148  Sum_probs=120.3

Q ss_pred             EEEECCCCCEEEEEe----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           27 CVKFSNDGTLLASAS----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      -..|+|...++|.++    ..|++.||- .+|++..... .+-.++++||+|..-.|+.|-.-|.+.+|...+. +.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc-eeeee
Confidence            358999999998876    358899983 5555422111 1223568999999999999988999999987763 33444


Q ss_pred             eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE--EeeecC----cCeEEEEEccCCCE------EEEeeCC
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHS----MPVTSVHFNRDGSL------IVSGSHD  170 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~------l~~~~~d  170 (312)
                      ...|..+|.-+.|+++|+.++++..-|.|.+|.......++  .+..|.    ....|...+++++-      .++.+.+
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe  176 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE  176 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence            45688999999999999999999999999999765221111  111221    22445666666432      2233333


Q ss_pred             CeEE-EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          171 GTCK-IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       171 ~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      ..+- .++.+.....++..         -.-.|+|..+..++.+|+|+-.|- +++...+
T Consensus       177 ~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V  226 (1416)
T KOG3617|consen  177 SALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTV  226 (1416)
T ss_pred             hhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEE
Confidence            3332 33222111111110         013567888888999999988873 4554443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.68  E-value=7.4e-07  Score=69.92  Aligned_cols=201  Identities=17%  Similarity=0.269  Sum_probs=122.9

Q ss_pred             cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-E----EEEeeecC------------cCeEEEEEccCC--CEEEEe
Q 021459          107 SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-C----TRVIRAHS------------MPVTSVHFNRDG--SLIVSG  167 (312)
Q Consensus       107 ~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~----~~~~~~~~------------~~v~~~~~~~~~--~~l~~~  167 (312)
                      .+.|.++.|...|.++++|...|.|.+|.-+... |    ...++.|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3568899999999999999999999999765432 1    12244443            236677776544  367788


Q ss_pred             eCCCeEEEEeCCCCcee----------------------eE--------------------cccCCCCcEEEEEECCCCC
Q 021459          168 SHDGTCKIWDAGEGACL----------------------KT--------------------LIDDKDPAVSFAKFSPNGK  205 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~----------------------~~--------------------~~~~~~~~~~~~~~~~~~~  205 (312)
                      +.|.+|++|.+.+....                      ++                    ....+...+..+.+..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            89999999987543100                      00                    0011233445566777777


Q ss_pred             EEEEEecCCeEEEEEcCCCcE---EEEEEccCCc--eeEEEE-EEEccCCcEEEEeecCCeEEEEECCchheee------
Q 021459          206 FILVGTLDSTLKLWNYSAGKF---LKIYTGHTNK--KYCITS-TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ------  273 (312)
Q Consensus       206 ~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------  273 (312)
                      .++++ .|=.|.+|++.-...   +--+..|.-.  ...++. .|.+..-..+.-.+..|.|++-|++...+..      
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            66654 566888998753321   1112222110  011222 2333334455566788999999997432211      


Q ss_pred             --c--------ccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          274 --K--------LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       274 --~--------~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                        .        +.+-...|..+.|++.|+++++-.+   .+|+||++.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvn  309 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVN  309 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEecc
Confidence              1        1122357888999999999988653   699999974

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.64  E-value=3e-05  Score=67.60  Aligned_cols=118  Identities=11%  Similarity=0.118  Sum_probs=89.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      |...|.--+++..+++++.|+.-|.+.+|+-..++... +..+....+..++.+++..++|+|+..|.|.++.++.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            45555556777889999999999999999987766533 22333455566778888999999999999999977642211


Q ss_pred             ----eeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459          100 ----LKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus       100 ----~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                          .... +.|...|.|++|++++..+++|...|.|..-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                1111 23678899999999999999999999998887766

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.5e-05  Score=70.30  Aligned_cols=184  Identities=18%  Similarity=0.276  Sum_probs=124.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      ..+.++|.+++  ++.++-|.-+|.+++++.....  .....|...      ..+|.++++|+.||.|.+-.+.++.+..
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            35566776664  6789999999999999866432  333345443      5689999999999999998877654432


Q ss_pred             eeeecccccEEEEEEecC-----CCEEEEeecCCcEEEEEcCCC--eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459          101 KTLRGHSDFVFCVNFNPQ-----SNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                       ... -..++.+++++|+     .+.+++|+..| +.++.-+--  +....+..-.++|.++.|.  |+++|=++.+| +
T Consensus       108 -~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v  181 (846)
T KOG2066|consen  108 -QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V  181 (846)
T ss_pred             -eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence             222 3357889999997     56899999999 888765421  1112344556799999995  67888887775 7


Q ss_pred             EEEeCCCCceeeEcccCCCCc-----EEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          174 KIWDAGEGACLKTLIDDKDPA-----VSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      ++||..+++.+..+.......     -..+.|.++. .|+.|= ..+|++..++
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence            999999888776554332111     1234566554 455553 3468887776

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.59  E-value=6.5e-07  Score=77.50  Aligned_cols=118  Identities=11%  Similarity=0.218  Sum_probs=90.3

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      +...|.--+++..+++++.|+..|.+++|+-..+........+..+.+..+..+++..+++.|+..|.|.++.++.+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34456666778889999999999999999976654333333344456667778888888999999999999988764322


Q ss_pred             EE------eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          143 RV------IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       143 ~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ..      -+.|+..|++++|++++..+.+|...|+|..-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            11      123678899999999999999999999998877765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.5e-05  Score=70.92  Aligned_cols=204  Identities=18%  Similarity=0.323  Sum_probs=124.5

Q ss_pred             EEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccccc-EEEEEEecCCCEEEEeecCC-----cEEEEEcCC------
Q 021459           71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF-VFCVNFNPQSNLIVSGSFDE-----SIRIWEVKT------  138 (312)
Q Consensus        71 ~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~------  138 (312)
                      +|++.+..++.|+.+|.|.+++-.  .+.+..++.+... +..+-...+.+.|++.+.|+     .+++||++.      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            477888899999999988887643  3444555555554 44343334446788877764     489999853      


Q ss_pred             CeEE---EEee----ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC---CCceeeEcccCCCCcEEEEEECCCCCEEE
Q 021459          139 GKCT---RVIR----AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG---EGACLKTLIDDKDPAVSFAKFSPNGKFIL  208 (312)
Q Consensus       139 ~~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  208 (312)
                      .+++   +.+.    ....++.+++.+.+-+.+++|-.+|.|..+.-.   ..............+++.+.+..+++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            2333   1111    124568899999999999999999999887421   11111122334456788888888887743


Q ss_pred             EEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-CCcc
Q 021459          209 VGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-GHTD  280 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~  280 (312)
                      ....-..|.+|.+.+..+ ......+.....|..  +....+.+++++ . ..+.+|+.........+. ||..
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss--~~~~t~qfIca~-~-e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS--FSDGTYQFICAG-S-EFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeee--cCCCCccEEEec-C-ceEEEEcCCCcceeeeecCCCeE
Confidence            344455799998874442 333444433333432  222223344443 3 369999987666655665 5554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.57  E-value=2.5e-06  Score=76.13  Aligned_cols=182  Identities=13%  Similarity=0.215  Sum_probs=127.8

Q ss_pred             CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEE
Q 021459          118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSF  197 (312)
Q Consensus       118 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (312)
                      ++..++.|+....+..+|+++.+..+........+.-|.  .+++.+.+|...|+|.+-|+++-+.++++..+. ..+  
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~si--  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSI--  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc-cce--
Confidence            345677888888888999999887766554443455554  467899999999999999999988888875543 334  


Q ss_pred             EEECCCCCEEEEEecC---------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE---
Q 021459          198 AKFSPNGKFILVGTLD---------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD---  265 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd---  265 (312)
                      ..|+-.|+.|++++..         ..|+|||++.-+.+..+.-+..+. .+  .+.+.=...++..+..|...+-|   
T Consensus       221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~-fl--rf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ-FL--RFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch-hh--hhcccccceEEEEecccceeeccccc
Confidence            3577789999998754         458999999877665554443331 11  22222345688889999999999   


Q ss_pred             CCchhe-eecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          266 LQQKTM-IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       266 ~~~~~~-~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +.+... +.-+......+..+.+++.++.++.+-.  ++.|.+|-
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~--~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH--EGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCCceEEEecc--cCcEeeec
Confidence            433211 2222233445899999999999998764  46899985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=2e-06  Score=73.40  Aligned_cols=82  Identities=22%  Similarity=0.361  Sum_probs=67.5

Q ss_pred             ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee
Q 021459          106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK  185 (312)
Q Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (312)
                      ....+.|++++|+...++.|..||+|.+||...+.....  ......+.++|+|+|..+++|+..|.+.+||+.-+....
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~  335 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKM  335 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccce
Confidence            556789999999999999999999999999987754322  334567899999999999999999999999987665544


Q ss_pred             Eccc
Q 021459          186 TLID  189 (312)
Q Consensus       186 ~~~~  189 (312)
                      .+..
T Consensus       336 qLls  339 (545)
T PF11768_consen  336 QLLS  339 (545)
T ss_pred             eecc
Confidence            4443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.51  E-value=0.0006  Score=60.20  Aligned_cols=236  Identities=16%  Similarity=0.190  Sum_probs=133.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCC--EEEEEEcc--CCCeEEEEc---------CCCeEEEEeCCCCceeee
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSS--DSHYICSAS---------DDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~d~~v~~wd~~~~~~~~~  101 (312)
                      ..++.++.++.|.-+|..+++.+.+.......  -..+.-+|  .+..++.++         .++.+..+|..++...-+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777788999999999999988776533221  00111111  124455553         357788888887644322


Q ss_pred             eeeccc-------------------ccE-EEEEEecCCCEEEEeecCC------------------cEEEEEcCCCeEEE
Q 021459          102 TLRGHS-------------------DFV-FCVNFNPQSNLIVSGSFDE------------------SIRIWEVKTGKCTR  143 (312)
Q Consensus       102 ~~~~~~-------------------~~v-~~~~~~~~~~~l~s~~~dg------------------~i~~wd~~~~~~~~  143 (312)
                      ......                   ..+ ....+.+.+..++.++.++                  .|.-.|.++|+..-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            111110                   001 1234455566777776554                  68888999998776


Q ss_pred             EeeecCcCeE------EEEEc----cCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459          144 VIRAHSMPVT------SVHFN----RDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG  210 (312)
Q Consensus       144 ~~~~~~~~v~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
                      .++.......      ...+.    -++.   .++.++.+|.+...|..+++.+-+.....    .....+|  ..+..+
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~  344 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLG  344 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEc
Confidence            5542111110      00111    1333   57788899999999999998765432110    0112233  223222


Q ss_pred             ------------------ecCCeEEEEEcCCCcEEEEEEccCCce-----eEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          211 ------------------TLDSTLKLWNYSAGKFLKIYTGHTNKK-----YCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       211 ------------------~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                                        ..+|.+.-+|..+++.+-.........     ...........+..++.++.||.|+.+|..
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence                              235778888888888765443221000     000000001235688888999999999999


Q ss_pred             chheeeccc
Q 021459          268 QKTMIQKLD  276 (312)
Q Consensus       268 ~~~~~~~~~  276 (312)
                      +++.+-+.+
T Consensus       425 tG~~lW~~~  433 (488)
T cd00216         425 TGKELWKFR  433 (488)
T ss_pred             CCceeeEEE
Confidence            998876554

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1e-05  Score=71.41  Aligned_cols=180  Identities=16%  Similarity=0.198  Sum_probs=116.5

Q ss_pred             ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (312)
                      +.+.|++++  .+.++-|...|.|++++..-..  .....|...      .-+|+++++|+.||++.+..+.+.+...++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            455666665  4789999999999999865332  222233322      458999999999999999887776554433


Q ss_pred             ccCCCCcEEEEEECCC-----CCEEEEEecCCeEEEEEcCC-CcEEE-EEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459          188 IDDKDPAVSFAKFSPN-----GKFILVGTLDSTLKLWNYSA-GKFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       188 ~~~~~~~~~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                        .....+..++++|+     .+.+++|+.-| +.++...- +.... ......+...++   .  ..|.++|-++.+| 
T Consensus       110 --df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i---~--W~g~lIAWand~G-  180 (846)
T KOG2066|consen  110 --DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI---K--WRGNLIAWANDDG-  180 (846)
T ss_pred             --ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE---E--ecCcEEEEecCCC-
Confidence              23455777888887     56788898888 77765321 11111 122222333332   2  2478999999888 


Q ss_pred             EEEEECCchheeecccCCccc------eEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          261 VYVWDLQQKTMIQKLDGHTDS------VISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       261 i~iwd~~~~~~~~~~~~h~~~------v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |++||+..++.+..++.....      -..+.|.+. ..|+.|..|   +|+|..+
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d---~v~i~~I  232 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD---SVKICSI  232 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC---eEEEEEE
Confidence            999999988777666543222      345566654 577777744   6777654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=0.00015  Score=67.20  Aligned_cols=236  Identities=13%  Similarity=0.172  Sum_probs=131.8

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  144 (312)
                      ..|.++.|..+..-++.+...|.|.+-|..+..  +.....-...|.+++|+||...++-.+..+++.+-+ .+-..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence            579999999999888888899999998876642  222333456799999999999998888877776543 21111111


Q ss_pred             eeec-----CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-----ecCC
Q 021459          145 IRAH-----SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-----TLDS  214 (312)
Q Consensus       145 ~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~d~  214 (312)
                      ..-+     ....-.+.|-...+.| -|+ .|.-...+........... .....-..+.|--||+++++.     ....
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             cccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            0000     1111222332211111 111 1111111110000000000 011122346799999999984     2237


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCc---hheeecccCCccceEEEEEc
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQ---KTMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~  288 (312)
                      .|++||.. +..-..-......   -....+.|.|..+++-   +.|+.|.+|.-+.   ++..-.++.....|..|+|+
T Consensus       223 kirV~drE-g~Lns~se~~~~l---~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  223 KIRVYDRE-GALNSTSEPVEGL---QHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eEEEeccc-chhhcccCccccc---ccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence            89999975 3221110001111   1122344677787764   3556799997643   23333444455569999999


Q ss_pred             CCCceEEEeeecCCee-EEEEee
Q 021459          289 PTENKIASAGLDGDRT-VRVWVQ  310 (312)
Q Consensus       289 p~~~~l~~~~~dgd~~-v~iw~~  310 (312)
                      .++..|+.....+... |++|-.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEe
Confidence            9999999866556655 999964

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.47  E-value=0.00029  Score=59.83  Aligned_cols=265  Identities=14%  Similarity=0.135  Sum_probs=130.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC--------C
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR--------T   95 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~--------~   95 (312)
                      .|+.+.|+++...|+.|-..|.|.||.....+.-.  ......-....+.+-      ...++.-.+-|+.        .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58899999999999999999999998765432211  000001111111110      0011111122221        1


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--e------cCcCeEEEEEcc-----CC-
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--A------HSMPVTSVHFNR-----DG-  161 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~-  161 (312)
                      +......+....+.|.+++.+. =-+++.|..+|.+.+.|++....+..-.  .      ....++++.|..     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            1223333444578899999864 4588999999999999998776654421  1      223577777763     33 


Q ss_pred             --CEEEEeeCCCeEEEEeCC--C-CceeeEc----ccCCCCcEEEEEECCC--------------------CCEEEEEec
Q 021459          162 --SLIVSGSHDGTCKIWDAG--E-GACLKTL----IDDKDPAVSFAKFSPN--------------------GKFILVGTL  212 (312)
Q Consensus       162 --~~l~~~~~d~~i~iwd~~--~-~~~~~~~----~~~~~~~~~~~~~~~~--------------------~~~l~~~~~  212 (312)
                        -.+++|+..|.+.+|.+.  . +.....+    .......+....++.+                    -+.+++...
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              368899999999998653  1 1111111    1222333333333211                    122444455


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE----ccCCcEEEEeecCCeEEEEECCchheeecccCC----ccceEE
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS----VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH----TDSVIS  284 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~  284 (312)
                      +..+|++...+.+......  .....+....+.    ...+..|++-..+|.|+++.+..-+.+...+-.    ...+..
T Consensus       234 e~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred             ccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence            7789999887766544332  222222222222    234667888899999999999877666554331    223445


Q ss_pred             EEEcCCCceEEEeee
Q 021459          285 VTCHPTENKIASAGL  299 (312)
Q Consensus       285 l~~~p~~~~l~~~~~  299 (312)
                      ..+.++|..+.-.|.
T Consensus       312 ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  312 SSISRNGDIFYWTGP  326 (395)
T ss_dssp             -EE-TTS-EEEE-SS
T ss_pred             cEECCCCCEEEEeCc
Confidence            556777776665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=0.00015  Score=63.76  Aligned_cols=175  Identities=17%  Similarity=0.181  Sum_probs=106.7

Q ss_pred             ECCCCCEEEE-EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---C-eEEEEeCCCCceeeeeee
Q 021459           30 FSNDGTLLAS-ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---R-TLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        30 ~s~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~v~~wd~~~~~~~~~~~~  104 (312)
                      ++|||+.+.. .-..+.+.+.|.++.+....+.-- .....+.++++|+++++.+.+   + ++..-+...         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------  269 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------  269 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc---------
Confidence            4456654432 223456667777776665554432 234567899999999887632   1 222222111         


Q ss_pred             cccccEEEEE--------EecCCCEEEEeecCCcEEEEEcCC----C-eEEEEeeecCcCeEEEEEccCCCEEEEee-CC
Q 021459          105 GHSDFVFCVN--------FNPQSNLIVSGSFDESIRIWEVKT----G-KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HD  170 (312)
Q Consensus       105 ~~~~~v~~~~--------~~~~~~~l~s~~~dg~i~~wd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  170 (312)
                        .+  ..+.        +.++|++...  .++.|.+.|.++    + +.+..+. -......+.++|||+++++++ .+
T Consensus       270 --~d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        270 --RD--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             --Cc--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence              11  1222        2346766554  256799999987    3 3333333 344567899999999887655 58


Q ss_pred             CeEEEEeCCCCce------------eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          171 GTCKIWDAGEGAC------------LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       171 ~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      .++.+.|+.+.+.            ..+......+  ....|+++|....+--.|..|..|++..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP--LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP--LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc--ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999977442            2222211111  2346899998878888899999999865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=5e-06  Score=71.02  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ......|.+.+++|+.+.++.|..||+|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            457788999999999999999999999999998765332  223345567899999999999999999999999854

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.40  E-value=0.00059  Score=58.83  Aligned_cols=229  Identities=17%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+.+....-....+.++|.|+.++.+ .||...++.........  .   +.-..++|.+.++ +|+-...+.|.++.--
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            44455566667889999999999885 55788888754433322  2   2334688999555 5555568889996322


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      .. ...+.++.. ..+..+-  + |..|+..+.+ .|.+||..+++.++.+...  +|..+.|++++++++..+.+ .+.
T Consensus        98 ~~-~~~k~i~~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~  168 (443)
T PF04053_consen   98 KN-EVVKSIKLP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY  168 (443)
T ss_dssp             EE--TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred             cc-ccceEEcCC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence            11 111122111 1222222  2 7777766544 7999999999988877543  48999999999999988876 566


Q ss_pred             EEeCCCC---------ce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          175 IWDAGEG---------AC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       175 iwd~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +++....         .. ......+....+....|..+  .++-.+.. .++.  +.+|+... +..-..+.+.+..  
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~-i~~ld~~~yllgy--  240 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI-IAHLDKPLYLLGY--  240 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE-EEE-SS--EEEEE--
T ss_pred             EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce-EEEcCCceEEEEE--
Confidence            6654322         00 01111111233445556555  44444444 6666  44554322 2211222232221  


Q ss_pred             EccCCcEEEEeecCCeEEEEECCc
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                       .++...+.....|+.|..+.+..
T Consensus       241 -~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  241 -LPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -ETTTTEEEEE-TT--EEEEE--H
T ss_pred             -EccCCEEEEEECCCCEEEEEECH
Confidence             23445677777888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.40  E-value=0.00048  Score=53.36  Aligned_cols=261  Identities=15%  Similarity=0.178  Sum_probs=129.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-EEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC  112 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~  112 (312)
                      |++++.|..+|.+.+.+.+++.+..++..- +.|. .....+++..+..++.|++.+..|..+. .++-..+-..+.-.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVS  140 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceecc
Confidence            567888999999999999999777666543 2332 3446678999999999999999998774 444333322233334


Q ss_pred             EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--CcCeEE--EEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc
Q 021459          113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SMPVTS--VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI  188 (312)
Q Consensus       113 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (312)
                      .+.+|-...|+.+...|.|---..+..... .+-.+  ..|+..  +.   -+..+..+.-||.+.-+| ..++.+.++.
T Consensus       141 P~i~~g~~sly~a~t~G~vlavt~~~~~~~-~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  141 PVIAPGDGSLYAAITAGAVLAVTKNPYSST-EFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             ceecCCCceEEEEeccceEEEEccCCCCcc-eehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            445563334444455555443333333111 11111  122211  11   122344444555555555 3333333221


Q ss_pred             cCCCCcEEEEEEC-CCCCEEEEEecC--------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc---cCCcEEEEee
Q 021459          189 DDKDPAVSFAKFS-PNGKFILVGTLD--------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV---TNGKYIVSGS  256 (312)
Q Consensus       189 ~~~~~~~~~~~~~-~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~  256 (312)
                      . .++....-+-+ |..+.+..+..+        ..-.+|..+.|...+.+....     +...+..   ...++|..++
T Consensus       216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s  289 (354)
T KOG4649|consen  216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSS  289 (354)
T ss_pred             C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhc
Confidence            1 11111100111 222333332222        122356666665444433211     0111111   1256788889


Q ss_pred             cCCeEEEEECCchheeecccCCccce---EEEEE------cCC--CceEEEeeecCCeeEEEEeec
Q 021459          257 EDNCVYVWDLQQKTMIQKLDGHTDSV---ISVTC------HPT--ENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       257 ~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~------~p~--~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .||++.+--.+  ..+..+..|.+.+   .++..      +|-  +.+|+.++-  |..|+-|+++
T Consensus       290 ~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcR--DdYv~cldl~  351 (354)
T KOG4649|consen  290 GDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCR--DDYVRCLDLD  351 (354)
T ss_pred             CCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEc--cCeEEEEecc
Confidence            99988886432  2233333343332   22222      231  346777774  4589989875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.34  E-value=0.00077  Score=53.30  Aligned_cols=210  Identities=16%  Similarity=0.228  Sum_probs=114.7

Q ss_pred             CCCCceeceeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcC
Q 021459            7 PPYKPYRHFKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASD   84 (312)
Q Consensus         7 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~   84 (312)
                      |.|...-.-+.+.+-.+.++.++|.|+.+ +++.....+.|...+. .++.+.++.-. .+....|++..++.++++--.
T Consensus         6 ~~y~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er   84 (248)
T PF06977_consen    6 PDYRVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER   84 (248)
T ss_dssp             TT-EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred             CCcEEEEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence            34433333456777777899999999866 5556677788877786 46777666533 245778999888888877666


Q ss_pred             CCeEEEEeCCCCce-----eeeee-----ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC---CeEEEEe------
Q 021459           85 DRTLRIWDARTPFD-----CLKTL-----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT---GKCTRVI------  145 (312)
Q Consensus        85 d~~v~~wd~~~~~~-----~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~------  145 (312)
                      ++.+.++++.....     ....+     ..+...+-.++|+|.++.|+.+-...-..+|.++.   .......      
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            88898888732111     11111     12344578899999988888877766667776653   2111111      


Q ss_pred             --eecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccC--------CCCcEEEEEECCCCCEEEEEecCC
Q 021459          146 --RAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDD--------KDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       146 --~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                        ...-..+.+++++|. +.+++....+..+..+| .+|+.+..+.-.        .-+....++++++|++.++ +.-+
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN  242 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN  242 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence              112234678899985 45666677777888888 556654433221        1245667889999865554 4455


Q ss_pred             eEEEE
Q 021459          215 TLKLW  219 (312)
Q Consensus       215 ~i~v~  219 (312)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.30  E-value=3.1e-07  Score=78.66  Aligned_cols=199  Identities=20%  Similarity=0.308  Sum_probs=123.4

Q ss_pred             ccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEcc-CCCeEEEEcC----CCeEEEEe
Q 021459           22 SRAVSCVKFSN--DGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSS-DSHYICSASD----DRTLRIWD   92 (312)
Q Consensus        22 ~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~v~~wd   92 (312)
                      ...+.|+++..  +..+++.|..+|.|-+-......-  .....+|....++++|++ |.+.||+|-.    |-.+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566777654  345788899999998876553221  223455777889999998 5677877732    45789999


Q ss_pred             CCCCce----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEe
Q 021459           93 ARTPFD----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSG  167 (312)
Q Consensus        93 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  167 (312)
                      +.+...    ......+......+++|..+.+++++|.....+.++|++.... .........+..+...| .+.++++-
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceecc
Confidence            876421    1111111223345788888888999999999999999984321 11111233456677777 66676655


Q ss_pred             eCCCeEEEEe-CCCCce-eeEcccCC---CCcEEEEEECCCCC-EEEEE-ecCCeEEEEEcC
Q 021459          168 SHDGTCKIWD-AGEGAC-LKTLIDDK---DPAVSFAKFSPNGK-FILVG-TLDSTLKLWNYS  222 (312)
Q Consensus       168 ~~d~~i~iwd-~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~-~l~~~-~~d~~i~v~d~~  222 (312)
                      . ||.|.+|| .++-+. +..+....   ......++|.|... ++++. -..++|+++|.+
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            4 99999999 333221 11121111   12355667887543 34444 455789999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.26  E-value=0.0016  Score=53.26  Aligned_cols=260  Identities=16%  Similarity=0.189  Sum_probs=148.1

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEeCCCCceeeee--ee-cccc--
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWDARTPFDCLKT--LR-GHSD--  108 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd~~~~~~~~~~--~~-~~~~--  108 (312)
                      +.+.|+|..+++.+..+..-  -.-.+..+|+++.++++.          ..-.|.+||..+. .....  +. ++..  
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhee
Confidence            47889999998888776542  223467899999888653          2336889998874 22211  11 1110  


Q ss_pred             --cEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC-CCce
Q 021459          109 --FVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-EGAC  183 (312)
Q Consensus       109 --~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~  183 (312)
                        ......++.|+++++....  ..+|.|-|+..++....+....+  ..+--+++ +-|.+-+.||.+....+. .|+.
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPSGN-RGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEEET-TEEEEEETTSCEEEEEETSTSSE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEEecCC-CceEEEecCCceEEEEECCCCCE
Confidence              1123467788888776543  45788999999888777654332  22222222 457788889988887776 3332


Q ss_pred             ee----EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EEEEEccCC----ceeE----EEEEEEccCC
Q 021459          184 LK----TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LKIYTGHTN----KKYC----ITSTFSVTNG  249 (312)
Q Consensus       184 ~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~----~~~~----~~~~~~~~~~  249 (312)
                      ..    .+....++.+..-.+...+..++..+.+|.|+-.|+.....  ...+.....    ..+.    -...+....+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            21    12223333443344555666666688999999999876653  222221110    0000    0112333344


Q ss_pred             cEEEEee-------cCC--eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          250 KYIVSGS-------EDN--CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       250 ~~l~~~~-------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++.+.-.       +|+  .|-++|+.+++.+.++.. ..++.+|+.+.+.+-++.+-..+++.+.+||.
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence            4433321       122  377779999999888863 34577999998876444433335678999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=6.4e-05  Score=67.11  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++|..|.++..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4468999999899999999999999988777666667899999999999999999999999999999653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.20  E-value=5e-07  Score=77.45  Aligned_cols=201  Identities=16%  Similarity=0.280  Sum_probs=122.3

Q ss_pred             cCCEEEEEEccC--CCeEEEEcCCCeEEEEeCCCCcee-eeeeecccccEEEEEEec-CCCEEEEee----cCCcEEEEE
Q 021459           64 SEGISDLAWSSD--SHYICSASDDRTLRIWDARTPFDC-LKTLRGHSDFVFCVNFNP-QSNLIVSGS----FDESIRIWE  135 (312)
Q Consensus        64 ~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~s~~----~dg~i~~wd  135 (312)
                      ...+.++++.-+  ..+++.|..+|.|-+-..+.+... -....++.....+++|++ |.+.|++|-    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            455677777654  357889999999999887665433 233456778889999988 556676663    246799999


Q ss_pred             cCCCe--E--EEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEE
Q 021459          136 VKTGK--C--TRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILV  209 (312)
Q Consensus       136 ~~~~~--~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  209 (312)
                      +.++-  +  ...+.. ......+++|..+.+++++|.....+.++|++..........  ...+..+..+| .+++++.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceec
Confidence            98761  1  112222 223455788888999999999999999999985332222111  11233445667 5667665


Q ss_pred             EecCCeEEEEE-cCCCcE-EEEEEccCCc--eeEEEEEEEccCCcEEEE-eecCCeEEEEECC
Q 021459          210 GTLDSTLKLWN-YSAGKF-LKIYTGHTNK--KYCITSTFSVTNGKYIVS-GSEDNCVYVWDLQ  267 (312)
Q Consensus       210 ~~~d~~i~v~d-~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~  267 (312)
                      -. ||.|.+|| .++-+. +..+.....+  .......+.+.....+++ --..++|+++|+.
T Consensus       214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            54 99999999 443322 1111111111  112223333333334444 4456889999874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.18  E-value=0.0027  Score=52.91  Aligned_cols=265  Identities=17%  Similarity=0.222  Sum_probs=119.2

Q ss_pred             EECCCCCEEEE-EeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec
Q 021459           29 KFSNDGTLLAS-ASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        29 ~~s~~~~~l~t-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      +|.+||+.|+. +..||  .+.+.|+.+++...-..+.........++|+.+.++-......|+-.|+++..+ ......
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence            57788875544 44455  455558888776554333222223456778877776555567888889887543 222233


Q ss_pred             ccccEEEEEE--ecCCCEEEEeec----------------------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC
Q 021459          106 HSDFVFCVNF--NPQSNLIVSGSF----------------------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG  161 (312)
Q Consensus       106 ~~~~v~~~~~--~~~~~~l~s~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
                      ..+.+-...|  +.|+..++-.-.                      ...|..-|+.+|+....+. ....+.-+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            3444433444  334554432211                      1235555777777654444 34456778888855


Q ss_pred             CEE-EEeeC---CC-eEEEEeCCC-CceeeEcc-cCCCCcEEEEEECCCCCEEEEEe-----cCCeEEEEEcCCCcEEEE
Q 021459          162 SLI-VSGSH---DG-TCKIWDAGE-GACLKTLI-DDKDPAVSFAKFSPNGKFILVGT-----LDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       162 ~~l-~~~~~---d~-~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~  229 (312)
                      ..+ +-|.+   +. .-+||-+++ +...+.+. ......+..-.|.|||..+.--+     .+..|.-+|..+++....
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence            444 43332   22 135664433 22222221 12234556667999998766522     244577778877765433


Q ss_pred             EEccCCceeEEEEEEEccCCcEEEEeecC----------------CeEEEEECCchheee---------cccCCcc-ceE
Q 021459          230 YTGHTNKKYCITSTFSVTNGKYIVSGSED----------------NCVYVWDLQQKTMIQ---------KLDGHTD-SVI  283 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~---------~~~~h~~-~v~  283 (312)
                      ....    .+... ...+++++++.=+.|                -.|++++++.+....         .+.++.. .-.
T Consensus       280 ~~~p----~~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  280 MEMP----WCSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EEE-----SEEEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             EeCC----ceeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            2221    23332 233667776653333                256677776544321         1122211 124


Q ss_pred             EEEEcCCCceEEEeeec
Q 021459          284 SVTCHPTENKIASAGLD  300 (312)
Q Consensus       284 ~l~~~p~~~~l~~~~~d  300 (312)
                      ...|+||+++++-.|.-
T Consensus       355 hp~FSPDgk~VlF~Sd~  371 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSDM  371 (386)
T ss_dssp             --EE-TTSSEEEEEE-T
T ss_pred             CCccCCCCCEEEEECCC
Confidence            66899999988876643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=0.0014  Score=55.47  Aligned_cols=233  Identities=17%  Similarity=0.186  Sum_probs=118.7

Q ss_pred             ccCCCeEEEEc---------CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           73 SSDSHYICSAS---------DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        73 ~~~~~~l~~~~---------~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      |||+++++...         ..+.+.+||+.+..  ...+......+....|+|+++.++... ++.|.++++.+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            46676666532         23578899998742  223322245677899999999988875 5789999987775443


Q ss_pred             Eeeec-----------------CcCeEEEEEccCCCEEEEeeCC-Ce---------------------------------
Q 021459          144 VIRAH-----------------SMPVTSVHFNRDGSLIVSGSHD-GT---------------------------------  172 (312)
Q Consensus       144 ~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~d-~~---------------------------------  172 (312)
                      .....                 -..-..+.|+||+++|+....| ..                                 
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence            22111                 0123568899999988765432 11                                 


Q ss_pred             --EEEEeCCCCceee-Ecc---cCCCCcEEEEEECCCCCEEEEEe--cC---CeEEEEEcCCCcEEEEEEccCCcee--E
Q 021459          173 --CKIWDAGEGACLK-TLI---DDKDPAVSFAKFSPNGKFILVGT--LD---STLKLWNYSAGKFLKIYTGHTNKKY--C  239 (312)
Q Consensus       173 --i~iwd~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~~~~--~d---~~i~v~d~~~~~~~~~~~~~~~~~~--~  239 (312)
                        +.++|+.+++... ...   ...+..+..+.|.++++.|++.-  .+   ..+.++|..++..............  .
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence              2234444433211 111   12234456677888887444432  22   2456677766654333322111100  0


Q ss_pred             EEEEEE-ccCCcEEEEeecCCeEEEE--ECCchheeecccCCccceEE-EEEcCCCceEE-EeeecCCeeEEEEe
Q 021459          240 ITSTFS-VTNGKYIVSGSEDNCVYVW--DLQQKTMIQKLDGHTDSVIS-VTCHPTENKIA-SAGLDGDRTVRVWV  309 (312)
Q Consensus       240 ~~~~~~-~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~-l~~~p~~~~l~-~~~~dgd~~v~iw~  309 (312)
                      -...+. ..+..++.....+|.-+||  +...+. ...+....-.|.. +.+.++++.+. ++..++-..-.||.
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~  311 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR  311 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence            011222 3445566555677766665  444433 3344444445645 57788776554 44432223334443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.0036  Score=55.43  Aligned_cols=146  Identities=12%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             EEEEEecCCCEEEEeecCC----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-----C
Q 021459          111 FCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-----G  181 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~  181 (312)
                      .-+.++|+++++++.+.+.    ++..-+.........+....  +  -++.++|++...  .++.|.+.|.++     .
T Consensus       238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~  311 (635)
T PRK02888        238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS  311 (635)
T ss_pred             ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCc
Confidence            4467788888887776432    23333322222111111100  0  133457776665  357899999987     3


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcE------------EEEEEccCCceeEEEEEEEccC
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKF------------LKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      .....+....  ....+.++|||+++++++ .+.+|.|+|+.+.+.            +........   .+...| ..+
T Consensus       312 ~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG---PLHTaF-Dg~  385 (635)
T PRK02888        312 ALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG---PLHTAF-DGR  385 (635)
T ss_pred             ceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC---cceEEE-CCC
Confidence            3444333222  234567999999887764 588999999976442            111111111   123333 356


Q ss_pred             CcEEEEeecCCeEEEEECCc
Q 021459          249 GKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~  268 (312)
                      |....|---|..|..||+..
T Consensus       386 G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        386 GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCEEEeEeecceeEEEehHH
Confidence            77888888899999999865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.00016  Score=62.06  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             cccceEEEEECCCCCEEEEEe---CC-CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCe--EEEEeC
Q 021459           21 HSRAVSCVKFSNDGTLLASAS---LD-KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRT--LRIWDA   93 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--v~~wd~   93 (312)
                      -...+..-+|+|++..++...   .. ..+.++++.+++...... ....-...+|+|||+.|+.+ ..|+.  |.+.|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            344566678999998766542   22 358888888765432222 12223357899999877654 45665  555566


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEee-cCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ....  ...+..-.+.-..-.|+|||+.++..+ ..|.  |.+++.+.++..+ +......-..-.|+|||++++..+..
T Consensus       270 ~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         270 DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEecc
Confidence            5532  222332233333677999999876554 4454  6666776665433 22222222366799999998876643


Q ss_pred             -Ce--EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          171 -GT--CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       171 -~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                       |.  |.+.|+.++...+.+.  .........+.+++..+...+
T Consensus       347 ~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         347 GGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence             43  5566665544322221  112222334677777665543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.6e-05  Score=68.42  Aligned_cols=95  Identities=13%  Similarity=0.168  Sum_probs=74.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-EEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-DLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      -...|.-+.|+|.-.+||++..+|.+.+...+ .+.+..+.-|...++ +++|.|||+.|+.|-.||+|++-|++.+...
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34567789999999999999999999888777 666677776777777 9999999999999999999999999886543


Q ss_pred             eeeeecccccEEEEEEe
Q 021459          100 LKTLRGHSDFVFCVNFN  116 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~  116 (312)
                      ..........|.++-|+
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            33222233455555554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.08  E-value=0.00091  Score=57.48  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             cCCEEEEEEccCCCeEEEE---cCC-CeEEEEeCCCCcee-eeeeecccccEEEEEEecCCCEEEEe-ecCCc--EEEEE
Q 021459           64 SEGISDLAWSSDSHYICSA---SDD-RTLRIWDARTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSG-SFDES--IRIWE  135 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~---~~d-~~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~--i~~wd  135 (312)
                      ...+..-+|+|++..++-.   ... ..+.++++.++... +....++   -...+|+|||+.++.+ ..||.  |+++|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            3456667899998765533   222 35888898775432 2223333   3457899999876544 45554  66778


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCe--EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGT--CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      +..++..+ +..-...-..-.|+|||+.++-.+ ..|.  |.+.|...+... .+... ...-..-.|+|||++++..+.
T Consensus       269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCCCCEEEEEec
Confidence            88776443 322222223557899999877544 4454  455565554432 22211 122225569999999988764


Q ss_pred             C-Ce--EEEEEcCCCcEEEE
Q 021459          213 D-ST--LKLWNYSAGKFLKI  229 (312)
Q Consensus       213 d-~~--i~v~d~~~~~~~~~  229 (312)
                      + |.  |.+.|+.++...+.
T Consensus       346 ~~g~~~i~~~~~~~~~~~~~  365 (425)
T COG0823         346 SGGQWDIDKNDLASGGKIRI  365 (425)
T ss_pred             cCCceeeEEeccCCCCcEEE
Confidence            3 44  66666665554333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.08  E-value=0.0056  Score=52.94  Aligned_cols=143  Identities=15%  Similarity=0.210  Sum_probs=80.0

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      .......+.++|+|++++.+ .||...++..... ....     .+......|.+ .+.+++-...++|.++.--..+..
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW-RNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT-EEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC-cccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence            33457789999999999885 5788888874332 2111     23344577888 456777777888999632222211


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      ..++. ...+..+..   |.+|...+.+ .|.+||..+++.++++..   ..+..+.|+++|.+++..+.+ .+.+++..
T Consensus       103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            22222 123444432   7777766555 899999999998888742   236788899999999988755 67777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.0054  Score=52.38  Aligned_cols=200  Identities=17%  Similarity=0.186  Sum_probs=132.3

Q ss_pred             EEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeee
Q 021459           27 CVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        27 ~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~  102 (312)
                      .++.++.++.+ ++...++.|.+.|..+........-- .....++++++++.+..+..   ++.+.+.|..+... ...
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-~~~  155 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-TAT  155 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-EEE
Confidence            56777777744 44445688999997766665544322 25568999999987776655   57788888776433 333


Q ss_pred             eecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEE-----EeeecCcCeEEEEEccCCCEEEEeeCC---CeE
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTR-----VIRAHSMPVTSVHFNRDGSLIVSGSHD---GTC  173 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i  173 (312)
                      ...-..+ ..+++.|+++.++... .++.|.+.|.......+     ...... .-..+.++|++..+.+....   +.+
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceE
Confidence            3322233 6789999999766655 67889999977665442     111122 23568899999966554443   589


Q ss_pred             EEEeCCCCceeeE-cccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEE
Q 021459          174 KIWDAGEGACLKT-LIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       174 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~  231 (312)
                      ...|..++..... ...... ....+..+|+|+.+.+.. ..+.+.+.|..+........
T Consensus       234 ~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            9999988776654 222222 334466899999888874 44889999988777665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.99  E-value=0.01  Score=52.58  Aligned_cols=194  Identities=16%  Similarity=0.189  Sum_probs=110.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccC------CEE--EEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSE------GIS--DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-  104 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-  104 (312)
                      +..++.++.++.+.-.|..+++.+.+......      .+.  .+... ++..++.++.++.|..+|.+++...-+... 
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45566777789999999999887766543222      000  11111 225777888899999999988754322211 


Q ss_pred             ccc--c-cE-EEEEEecCCCEEEEee---------cCCcEEEEEcCCCeEEEEeeecCc--------------------C
Q 021459          105 GHS--D-FV-FCVNFNPQSNLIVSGS---------FDESIRIWEVKTGKCTRVIRAHSM--------------------P  151 (312)
Q Consensus       105 ~~~--~-~v-~~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~--------------------~  151 (312)
                      .+.  . .+ ....+.  +..++.++         .+|.+.-+|..+|+.+-.++....                    .
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            110  0 01 111122  23444443         367888999999987655543211                    0


Q ss_pred             e-EEEEEccCCCEEEEeeCCC------------------eEEEEeCCCCceeeEcccCCCC--------cEEEEEE-CCC
Q 021459          152 V-TSVHFNRDGSLIVSGSHDG------------------TCKIWDAGEGACLKTLIDDKDP--------AVSFAKF-SPN  203 (312)
Q Consensus       152 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~-~~~  203 (312)
                      + ...++.+.+..++.++.++                  .+.-+|..+++..=........        ....... .-+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            1 1234444456677776554                  6888899888776543221110        0001111 123


Q ss_pred             CC---EEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          204 GK---FILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       204 ~~---~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      +.   .+++++.+|.+..+|.++|+.+-..
T Consensus       298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         298 GKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            33   5777888999999999999876544

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.97  E-value=0.0062  Score=49.54  Aligned_cols=228  Identities=17%  Similarity=0.185  Sum_probs=122.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee---------
Q 021459           32 NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT---------  102 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~---------  102 (312)
                      ..++.|+.|..+| +.+++........++. +...|..+...++-+.|++-+ |+.+.++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998888 8888883322222222 233499999999888777664 599999998642211100         


Q ss_pred             ----eecccccEEEEE--EecCCCEEEEeecCCcEEEEEcCCC-----eEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459          103 ----LRGHSDFVFCVN--FNPQSNLIVSGSFDESIRIWEVKTG-----KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus       103 ----~~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                          .......+...+  -...+...+.......|.+|.....     +..+.+.. ...+..+.|.  ++.++.|..+ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-
Confidence                001112233333  1123344444455568888877543     23334332 3567888888  4467776655 


Q ss_pred             eEEEEeCCCCceeeEcccCC-----------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE--EEEccCCcee
Q 021459          172 TCKIWDAGEGACLKTLIDDK-----------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK--IYTGHTNKKY  238 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~  238 (312)
                      ...+.|+.++....-+....           ...+.....+ ++.+|++.  +..-.+.|. .|+..+  .+.....+  
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p--  231 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAP--  231 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcCCch--
Confidence            47788888654432211110           1123333333 34555543  323333343 343322  22222221  


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG  277 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (312)
                       ....+.   ..+|+..+. +.|.+|++.++++++.+..
T Consensus       232 -~~~~~~---~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  232 -QSVAYS---SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             -hEEEEE---CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence             111222   346766655 4599999999988888764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.94  E-value=3.4e-05  Score=41.16  Aligned_cols=36  Identities=50%  Similarity=0.746  Sum_probs=32.5

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS   50 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~   50 (312)
                      ...+..|...|.++.|+++++++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456678999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.93  E-value=0.011  Score=51.21  Aligned_cols=202  Identities=16%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             ceEEEEECCCCCEEEEE-eCC----CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-----------Ce
Q 021459           24 AVSCVKFSNDGTLLASA-SLD----KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-----------RT   87 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~-~~d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~   87 (312)
                      .+...++||+|+++|-+ +..    ..++++|+.+++.+......... ..+.|.++++.++-...+           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988754 333    35899999999776533222221 239999998766544322           24


Q ss_pred             EEEEeCCCCcee-eeeeecc-ccc-EEEEEEecCCCEEEEeecC----CcEEEEEcCCC----eEEEEeeecCcCe-EEE
Q 021459           88 LRIWDARTPFDC-LKTLRGH-SDF-VFCVNFNPQSNLIVSGSFD----ESIRIWEVKTG----KCTRVIRAHSMPV-TSV  155 (312)
Q Consensus        88 v~~wd~~~~~~~-~~~~~~~-~~~-v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~----~~~~~~~~~~~~v-~~~  155 (312)
                      |+.|.+.++... ...+... ... ...+..++|+++++.....    ..+.+.|+..+    .....+......+ ..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            788888765432 1122222 223 5678889999986643332    34777788764    2233333333333 333


Q ss_pred             EEccCCCEEEEee---CCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEe-cCC--eEEEEEcCCCcEE
Q 021459          156 HFNRDGSLIVSGS---HDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDS--TLKLWNYSAGKFL  227 (312)
Q Consensus       156 ~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~  227 (312)
                      ... ++.+++...   ..+.|...++.....  -......+........+...+++|+... .++  .|+++++..+...
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            333 444444332   335666667765542  1112222333233334445555665543 333  5788888733333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.91  E-value=0.012  Score=50.76  Aligned_cols=193  Identities=20%  Similarity=0.211  Sum_probs=100.5

Q ss_pred             EEEECCCCCEEEEEeCC-----------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           27 CVKFSNDGTLLASASLD-----------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d-----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      .++.+|.|..||....+           ..|++|+.. |+++..+.-..+.+.++.|+.+.+++ ....||.+++||+..
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG  110 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC
Confidence            35667877777766444           158888755 45555555444889999998866544 556899999999864


Q ss_pred             Cce-----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEee---e-----cCcC-eE-EEEEcc
Q 021459           96 PFD-----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIR---A-----HSMP-VT-SVHFNR  159 (312)
Q Consensus        96 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~---~-----~~~~-v~-~~~~~~  159 (312)
                      ..+     ......-....+....+...|-.+++  .++.+.+..-.... ..+.+.   .     +... .. ...++.
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~  188 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS  188 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence            220     01111111112222233334433343  33444433221111 111110   0     0000 00 022333


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      +....+....++.+.+.+.....   .+ . ....+..++.||+++++|.-..+|.+.+....-.+.+.
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~---~i-~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFK---QI-D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             CcceEEEEecCCEEEEEEccccc---cc-c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence            44444444455555544322211   11 1 12457778899999999999999999888654444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=9.6e-05  Score=63.80  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=74.2

Q ss_pred             ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE-EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT-SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT  186 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (312)
                      ..+.-+.|+|.-..+|.+..+|.|-+..++ -+.+.++..+...++ +++|.|||+.++.|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            356778999999999999999999999888 445667776777777 999999999999999999999999999887766


Q ss_pred             cccCCCCcEEEEEEC
Q 021459          187 LIDDKDPAVSFAKFS  201 (312)
Q Consensus       187 ~~~~~~~~~~~~~~~  201 (312)
                      ........+....|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence            433333445555555

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.013  Score=50.18  Aligned_cols=261  Identities=15%  Similarity=0.155  Sum_probs=150.1

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeee
Q 021459           24 AVSCVKFSNDGTLLASAS-LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      ....+...|++..+.... ....+..-+............-...-..++.++.+..+. +...+..|.+.|..+....-.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            344567777775443332 222344444431111111111112234678888887444 444568899999665322211


Q ss_pred             eeecccccEEEEEEecCCCEEEEeec---CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEe
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSF---DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWD  177 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  177 (312)
                      ...+.  .-..++++|+++.+..+..   ++++.+.|..+++.......-..+ ..++++|+|+.+.... .++.+.+.|
T Consensus       112 ~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         112 IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            11222  3456889999987776655   688999998888877775443345 8899999999666554 788999999


Q ss_pred             CCCCceee-Ec--ccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEE-EEccCCceeEEEEEEEccCCc
Q 021459          178 AGEGACLK-TL--IDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       178 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      .......+ ..  .......-..+.++|+|..+.+....   +.+...|..++..... ......  .... ....+++.
T Consensus       189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~-v~~~p~g~  265 (381)
T COG3391         189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRG-VAVDPAGK  265 (381)
T ss_pred             CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCc-eeECCCCC
Confidence            76654442 10  00111223446789999976665433   5888888887766543 211111  1111 12336677


Q ss_pred             EEEEe-ecCCeEEEEECCchheeecccCCc---cceEEEEEcCC
Q 021459          251 YIVSG-SEDNCVYVWDLQQKTMIQKLDGHT---DSVISVTCHPT  290 (312)
Q Consensus       251 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~p~  290 (312)
                      .+... +..+.+.+-|..+...........   ..+..+++.+.
T Consensus       266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            76665 445889999888766665543322   23445555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.88  E-value=0.011  Score=49.33  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=100.1

Q ss_pred             CeEEEEeCCCcceEEEeeec-cCCEEEEE---EccC----CCeEEEEcC----------CCeEEEEeCCCC-c--eeeee
Q 021459           44 KTVIIWSASSLALVHRFVGH-SEGISDLA---WSSD----SHYICSASD----------DRTLRIWDARTP-F--DCLKT  102 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~-~~~v~~~~---~~~~----~~~l~~~~~----------d~~v~~wd~~~~-~--~~~~~  102 (312)
                      ..|++.|..+.+.+..+.-. .+.+.+++   +..+    ..+++.|..          .|.+.++++... .  ..++.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888887776655432 23344443   3332    457776642          288999998763 1  11222


Q ss_pred             --eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          103 --LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       103 --~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                        .....++|.+++-- ++ .++.+ .++.|.+|++...+ ....-.. ....+.++..  .++++++|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEE
Confidence              23356788888755 33 44443 35789999998777 3332221 2234555544  4568999988888887643


Q ss_pred             CC-CceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          179 GE-GACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       179 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      .. ...+..+..+ ....+..+.+-++++.++++..+|.+.++...
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            32 2222222222 23335555565555789999999999998875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=8.8e-05  Score=39.46  Aligned_cols=38  Identities=39%  Similarity=0.837  Sum_probs=33.1

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0067  Score=47.90  Aligned_cols=233  Identities=12%  Similarity=0.160  Sum_probs=121.5

Q ss_pred             EEEEECCCCC-EEEEEeCCCeE-EEEeCCCcceEEEeeeccCCE--EEEEEccCCCeEEEEcCC-----CeEEEEeCCCC
Q 021459           26 SCVKFSNDGT-LLASASLDKTV-IIWSASSLALVHRFVGHSEGI--SDLAWSSDSHYICSASDD-----RTLRIWDARTP   96 (312)
Q Consensus        26 ~~~~~s~~~~-~l~t~~~d~~i-~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~   96 (312)
                      ..+.|+|-.. -++.+..-|+. .++|.+..+....+...++.=  -.=+|+|||.+|...-.|     |.|-+||.+..
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            3456666443 45555555554 567777665443332211110  013589999999876433     78999999876


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeec------------------CCcEEEEEcCCCeEEEE--ee--ecCcCeEE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF------------------DESIRIWEVKTGKCTRV--IR--AHSMPVTS  154 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------------dg~i~~wd~~~~~~~~~--~~--~~~~~v~~  154 (312)
                      .+.+..+..|.-.-..+.+.+||+.++.+..                  +-++.+.|..+|+.+..  +.  .+...+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence            6666666666655567888999998876643                  11233334334433321  11  23445778


Q ss_pred             EEEccCCCEEEEeeCCCeEE-----EEeCCCCceeeEcccCC------CCcEEEEEECCCCCEEEEEecC-CeEEEEEcC
Q 021459          155 VHFNRDGSLIVSGSHDGTCK-----IWDAGEGACLKTLIDDK------DPAVSFAKFSPNGKFILVGTLD-STLKLWNYS  222 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d~~i~-----iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~  222 (312)
                      ++..+||+.++.+-..|.-.     +=..+.++.+..+....      ..-+..++.+.+..+++..+-. +..-+||..
T Consensus       231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            88888887766554433210     00011111111110000      0112233444444455555444 456789999


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  265 (312)
                      ++..+..-.-..    +....   ....-++..+.+|.+.++.
T Consensus       311 tG~vv~~a~l~d----aaGva---~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         311 TGAVVSEAALPD----AAGVA---AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCcEEecccccc----cccce---eccCceEEecCCceEEecc
Confidence            998765321110    11111   1122345556788888774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.0012  Score=60.36  Aligned_cols=136  Identities=16%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-------CCEEEEEecCCeEEEEEcCCCc-EEEEEEccC-Ccee
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-------GKFILVGTLDSTLKLWNYSAGK-FLKIYTGHT-NKKY  238 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~-~~~~  238 (312)
                      .....++-.|+..|+.+.....+....+.  .+.|+       ....++|-.++.+..||.+-.. .+-.-..+. ....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            34577888999999988877655444332  33332       2345667778899999987532 211111111 0111


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ...+... ....+||.|+.+|.|++||--...--..+++-..+|..|..+.||+++++..   +..+.|.+
T Consensus       579 ~Fs~~aT-t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc---~tyLlLi~  645 (794)
T PF08553_consen  579 NFSCFAT-TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC---KTYLLLID  645 (794)
T ss_pred             CceEEEe-cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee---cceEEEEE
Confidence            1222222 3455899999999999999543332234667789999999999999988765   34565554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.79  E-value=0.014  Score=47.87  Aligned_cols=244  Identities=13%  Similarity=0.150  Sum_probs=128.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeeccC-C------EEEEEEccCCCeEEEEcC--CCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGHSE-G------ISDLAWSSDSHYICSASD--DRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~~~~--d~~   87 (312)
                      .+..+|+++.++++.          ..-.|.+||..+......+.-... .      ...++++.|+++++....  .-+
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            467899999887643          345789999999887765543322 1      123566777776665432  345


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEEe----eecCcCeE-EEEEccCC
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRVI----RAHSMPVT-SVHFNRDG  161 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~  161 (312)
                      |.|-|+... +.+..+.-. + + ...|-..+.-+.+-+.||++....+. .|+.....    .....++. .-++...+
T Consensus       120 VtVVDl~~~-kvv~ei~~P-G-C-~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  120 VTVVDLAAK-KVVGEIDTP-G-C-WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEETTTT-EEEEEEEGT-S-E-EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             EEEEECCCC-ceeeeecCC-C-E-EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            677777653 334333211 1 1 11221122457777889999888886 45443221    11122222 22344444


Q ss_pred             CEEEEeeCCCeEEEEeCCCCceee--Ec--ccC-------CCCcEEEEEECCCCCEEEEEec---C-------CeEEEEE
Q 021459          162 SLIVSGSHDGTCKIWDAGEGACLK--TL--IDD-------KDPAVSFAKFSPNGKFILVGTL---D-------STLKLWN  220 (312)
Q Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~~--~~--~~~-------~~~~~~~~~~~~~~~~l~~~~~---d-------~~i~v~d  220 (312)
                      ..++-.+.+|.|+-.|+.......  ..  ...       .......+++++..+.|.+--.   +       ..|-++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            445546788888888876544211  11  100       0011223456554444444221   1       1478889


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE-eecCCeEEEEECCchheeecccC
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS-GSEDNCVYVWDLQQKTMIQKLDG  277 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  277 (312)
                      +.+++.+..+.... ....+..  ...+..+|++ ...++.+.+||..+++++..+++
T Consensus       276 ~~t~krv~Ri~l~~-~~~Si~V--sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  276 LKTHKRVARIPLEH-PIDSIAV--SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TTTTEEEEEEEEEE-EESEEEE--ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCCCeEEEEEeCCC-ccceEEE--ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            99988887765322 1222332  3333445544 45689999999999988877764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.75  E-value=0.012  Score=45.96  Aligned_cols=138  Identities=15%  Similarity=0.061  Sum_probs=87.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      ..+++.|+-.+.+.--|..++++..+... ...|.+-+.- -|++++.|+..|.+++.+..++.+.. .+......-...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w-~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW-NFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee-eeeehhhhccce
Confidence            34677788888888889888887654321 1222222111 47789999999999999998874432 222111111234


Q ss_pred             EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      ...+++..+..++.|+..+.-|.++..++...+.......+-++.|....+..+...|.+.
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence            4578899999999999999999999888777654433333334555223344444445443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.74  E-value=0.011  Score=53.16  Aligned_cols=226  Identities=19%  Similarity=0.270  Sum_probs=119.1

Q ss_pred             CCCeEEEEcCC------CeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecC-C-----cEEEEEcCCCeE
Q 021459           75 DSHYICSASDD------RTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-E-----SIRIWEVKTGKC  141 (312)
Q Consensus        75 ~~~~l~~~~~d------~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~~wd~~~~~~  141 (312)
                      .+.+++.|+.+      ..+..||..+.. .....+. ....-.+++.. ++...++||.+ |     ++..||...++-
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            35566677666      357788876541 1122222 11122233333 35788888888 3     577889887763


Q ss_pred             EEE--eeecCcCeEEEEEccCCCEEEEeeCCCe-----EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          142 TRV--IRAHSMPVTSVHFNRDGSLIVSGSHDGT-----CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       142 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      ...  +...........  -+|.+.++|+.||.     +..||..+.+....-.. ...........-+|...++|+.++
T Consensus       362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m-~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM-LTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCC-CcceeeeEEEEECCEEEEEcCcCC
Confidence            321  111111111111  26788899998864     77788877654321111 111122222344778888887554


Q ss_pred             ------eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe-----EEEEECCchh--eeecccCCccc
Q 021459          215 ------TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC-----VYVWDLQQKT--MIQKLDGHTDS  281 (312)
Q Consensus       215 ------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~--~~~~~~~h~~~  281 (312)
                            .+..||..+++....-.-..... .....  .-++.+.+.|+.||.     |..||..+.+  .+..+......
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~  515 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA  515 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccc-cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence                  46778887776543322111111 11111  236778888887773     6778876543  23223322222


Q ss_pred             eEEEEEcCCCceEEEeeecCCe---eEEEEee
Q 021459          282 VISVTCHPTENKIASAGLDGDR---TVRVWVQ  310 (312)
Q Consensus       282 v~~l~~~p~~~~l~~~~~dgd~---~v~iw~~  310 (312)
                      +..+.+  ++..++.||.||..   +|..|++
T Consensus       516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp  545 (571)
T KOG4441|consen  516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDP  545 (571)
T ss_pred             ccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence            222333  56778888888753   4444443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=4.5e-05  Score=57.73  Aligned_cols=142  Identities=13%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEE
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~  242 (312)
                      +..-+.++.++-++++..+...+-.........   ...-+..+++|+.+|.|++|..... .....+.....   .+..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e---~i~~  106 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE---SIDL  106 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhccee---ecccCceEEeecccceEEEecCCccchHHHhhhcccc---ccee
Confidence            444566777777776643322111111111122   2223467899999999999987521 11111111111   1221


Q ss_pred             E-EEccCCcEEEEeecCCeEEEEECCchheeecccCCc-cceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          243 T-FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       243 ~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      . ....++.+..+++.||.|+.|++.....+.....|+ .++..+.....+..++.+-...+..++.|++.
T Consensus       107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            1 222345578899999999999998877777777777 66777777777778877722355788888863

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.73  E-value=0.0062  Score=54.76  Aligned_cols=146  Identities=13%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             cceEEEEECCCCCEEEEEe------CCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-CeEEEE--
Q 021459           23 RAVSCVKFSNDGTLLASAS------LDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-RTLRIW--   91 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~------~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~w--   91 (312)
                      ..+...+++|+|+.++...      .|+  .|.+++.. +.......+  .....-.|+|+|..|.+.+.. ..+++.  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            3677889999999887654      244  34444532 222222222  247788999998877776532 222222  


Q ss_pred             ---------eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEE---EEcCCCeE-E---EEeee-cCcCeEE
Q 021459           92 ---------DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI---WEVKTGKC-T---RVIRA-HSMPVTS  154 (312)
Q Consensus        92 ---------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~---wd~~~~~~-~---~~~~~-~~~~v~~  154 (312)
                               ++..+ +...   ...+.|..+.|+|||..++... +|.|.+   -....|.. +   ..+.. -...+..
T Consensus       427 ~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                     33221 1111   2245699999999999877655 467776   33344431 1   11221 1223578


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEe
Q 021459          155 VHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      +.|.+++.++ ++..++...+|.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEE
Confidence            8999988854 555554444554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.69  E-value=0.016  Score=45.88  Aligned_cols=194  Identities=14%  Similarity=0.193  Sum_probs=106.6

Q ss_pred             eeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459          102 TLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (312)
                      .+.+-...+..++|+|+.+. +++....+.|..+++ +|+.++.+.... ...-.+++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34444556899999998765 455566677877886 477777665433 457788888888777776678899888873


Q ss_pred             CCc----e--eeEc----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC---CcEEEEEE--ccC----CceeEE
Q 021459          180 EGA----C--LKTL----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA---GKFLKIYT--GHT----NKKYCI  240 (312)
Q Consensus       180 ~~~----~--~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~--~~~----~~~~~~  240 (312)
                      ...    .  ...+    .......+..++|+|.++.|+++-...-..+|.+..   ...+....  ...    .....-
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321    1  1111    112334477889999988888887776677776653   22222211  111    011112


Q ss_pred             EEEEEccCCcEEEEeecCCeEEEEECCchheeec--ccC-C------ccceEEEEEcCCCceEEEe
Q 021459          241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK--LDG-H------TDSVISVTCHPTENKIASA  297 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-h------~~~v~~l~~~p~~~~l~~~  297 (312)
                      ...+.+..+++++...++..|..+|. +++.+..  +.. .      -..--.|++.++|..++++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            23456667888888999999999994 4444332  221 1      1245789999998666653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.68  E-value=0.012  Score=52.92  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             CCEEEEEEccCCCeEEEEc------CCC--eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC--------
Q 021459           65 EGISDLAWSSDSHYICSAS------DDR--TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--------  128 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~------~d~--~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------  128 (312)
                      ..+.+.+++|+|+.++...      .|.  .|.+++.......  ...+.  ......|+|++..+++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4677899999999877654      233  4555554332211  12222  36778999998877766433        


Q ss_pred             ----CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE---EeCCCCce-e---eEcccCCCCcEEE
Q 021459          129 ----ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI---WDAGEGAC-L---KTLIDDKDPAVSF  197 (312)
Q Consensus       129 ----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~~~~~  197 (312)
                          +.+.+.++..+....   .....|..+.|+|||..++... ++.|.+   -....+.. +   ..+..........
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                223333333332211   2245799999999999888765 467766   33333431 1   1111112222355


Q ss_pred             EEECCCCCEEEEEecCCeEEEEE
Q 021459          198 AKFSPNGKFILVGTLDSTLKLWN  220 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~d  220 (312)
                      +.|..++.++ ++..++.-.+|.
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEE
Confidence            6788888754 555444444443

>PHA02713 hypothetical protein; Provisional

Probab=97.67  E-value=0.012  Score=52.91  Aligned_cols=184  Identities=7%  Similarity=0.114  Sum_probs=96.4

Q ss_pred             CCCEEEEeecC------CcEEEEEcCCCeEEEE--eeecCcCeEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCcee
Q 021459          118 QSNLIVSGSFD------ESIRIWEVKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGACL  184 (312)
Q Consensus       118 ~~~~l~s~~~d------g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~  184 (312)
                      ++..++.||.+      ..+..||..+++-...  +....... +++ .-+++..+.|+.++     .+..||..+++..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56677777753      3477889877643211  11111111 222 23677778888754     4788998876543


Q ss_pred             eEcc-cCCCCcEEEEEECCCCCEEEEEecCC-----------------------eEEEEEcCCCcEEEEEEccCCceeEE
Q 021459          185 KTLI-DDKDPAVSFAKFSPNGKFILVGTLDS-----------------------TLKLWNYSAGKFLKIYTGHTNKKYCI  240 (312)
Q Consensus       185 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-----------------------~i~v~d~~~~~~~~~~~~~~~~~~~~  240 (312)
                      ..-. .........+  .-++...+.|+.++                       .+..||..+++....-.-...... .
T Consensus       381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~  457 (557)
T PHA02713        381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P  457 (557)
T ss_pred             ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence            2111 1111111122  23677777776542                       466788777665432111111111 0


Q ss_pred             EEEEEccCCcEEEEeecC------CeEEEEECCc---hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          241 TSTFSVTNGKYIVSGSED------NCVYVWDLQQ---KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                        ....-++++.+.|+.+      ..+..||..+   .+.+..+.........+++  ++..+++||.||..++-.+++
T Consensus       458 --~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        458 --GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             --cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCc
Confidence              1112356777777654      2467898875   3444444433333333333  778899999888666666655

>PHA02713 hypothetical protein; Provisional

Probab=97.64  E-value=0.015  Score=52.25  Aligned_cols=189  Identities=8%  Similarity=0.057  Sum_probs=93.8

Q ss_pred             CCCeEEEEcCC------CeEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEE
Q 021459           75 DSHYICSASDD------RTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCT  142 (312)
Q Consensus        75 ~~~~l~~~~~d------~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~  142 (312)
                      ++...+.|+.+      ..+..||..+..- .+..+...... .+++ .-+++..+.||.++     ++..||..+++-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56666777643      3477788765321 11111111111 1121 23567777887754     4888998876432


Q ss_pred             EE--eeecCcCeEEEEEccCCCEEEEeeCCC-----------------------eEEEEeCCCCceeeEcccCCCCcEEE
Q 021459          143 RV--IRAHSMPVTSVHFNRDGSLIVSGSHDG-----------------------TCKIWDAGEGACLKTLIDDKDPAVSF  197 (312)
Q Consensus       143 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (312)
                      ..  +.........+  .-+++..+.|+.++                       .+..||+.+.+....-.. ..+....
T Consensus       381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~  457 (557)
T PHA02713        381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRP  457 (557)
T ss_pred             ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-CcccccC
Confidence            21  11111111112  22677777777542                       477788877654321110 0111111


Q ss_pred             EEECCCCCEEEEEecC------CeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--eEEEEECCc
Q 021459          198 AKFSPNGKFILVGTLD------STLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--CVYVWDLQQ  268 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d------~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~  268 (312)
                      ....-+++..+.|+.+      ..+..||..+ ++....-.-.. +......  ..-++++.++|+.+|  .+..||..+
T Consensus       458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~--~~~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHT--ILHDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-cccccee--EEECCEEEEEeeecceeehhhcCccc
Confidence            1122356677777654      2467788877 55543221111 1111111  123678889999888  667777765


Q ss_pred             hhe
Q 021459          269 KTM  271 (312)
Q Consensus       269 ~~~  271 (312)
                      .+-
T Consensus       535 ~~W  537 (557)
T PHA02713        535 YEW  537 (557)
T ss_pred             ccc
Confidence            543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.64  E-value=0.029  Score=47.94  Aligned_cols=198  Identities=14%  Similarity=0.128  Sum_probs=103.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee--e------ccCCEEEEEEcc-----CC---
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV--G------HSEGISDLAWSS-----DS---   76 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---   76 (312)
                      .....+....++|++++.| |-.++|.|..+|.+.|.|......+..-.  .      ....|+++.|.-     |+   
T Consensus        77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            3444455668999999997 56699999999999999998776665521  1      234578888862     33   


Q ss_pred             CeEEEEcCCCeEEEEeCCC-C-ce----eeeeeecccccEEEEE-EecCC--------------------CEEEEeecCC
Q 021459           77 HYICSASDDRTLRIWDART-P-FD----CLKTLRGHSDFVFCVN-FNPQS--------------------NLIVSGSFDE  129 (312)
Q Consensus        77 ~~l~~~~~d~~v~~wd~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~~--------------------~~l~s~~~dg  129 (312)
                      -.|++|...|.+.+|.+.- . ..    .......+.+.+..+. ++.+.                    +-++....+.
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            3788889999999997641 1 11    1111123445555444 32220                    1233334466


Q ss_pred             cEEEEEcCCCeEEEEeeecCcCeEEEEE-----ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC---CcEEEEEEC
Q 021459          130 SIRIWEVKTGKCTRVIRAHSMPVTSVHF-----NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD---PAVSFAKFS  201 (312)
Q Consensus       130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~  201 (312)
                      .++++.+.+.+..............+.+     ...+..|++-..+|.++++.+..-+.+....-...   ..+....++
T Consensus       236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            7999998877655433322222333444     23566788889999999999887555443322110   011123456


Q ss_pred             CCCCEEEEEe
Q 021459          202 PNGKFILVGT  211 (312)
Q Consensus       202 ~~~~~l~~~~  211 (312)
                      ++|+.++..+
T Consensus       316 ~~Gdi~~~~g  325 (395)
T PF08596_consen  316 RNGDIFYWTG  325 (395)
T ss_dssp             TTS-EEEE-S
T ss_pred             CCCCEEEEeC
Confidence            7777555443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.64  E-value=0.0027  Score=58.18  Aligned_cols=135  Identities=15%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             CCCeEEEEeCCCcceEEEeeeccCC-EEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCCc-eeeee-e--ecccccEE
Q 021459           42 LDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSS-----DSHYICSASDDRTLRIWDARTPF-DCLKT-L--RGHSDFVF  111 (312)
Q Consensus        42 ~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~~-~~~~~-~--~~~~~~v~  111 (312)
                      ....+.-.|++.++.+..+..|... |..++=..     +..-.+.|-.+..+..||++-.. +++.. .  ........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4467777899999999998887654 65553321     12344567778899999987542 22211 1  11223445


Q ss_pred             EEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          112 CVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       112 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      |++-..+| +++.|+.+|.|++||--..+....+.+-..||..+..+.||+++++.+.. .+.+++.
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            66555554 78999999999999954333333455667899999999999988766554 5666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.028  Score=44.82  Aligned_cols=163  Identities=13%  Similarity=0.173  Sum_probs=103.8

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      +.+-+..|+++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....+++..++++.++--.++.+.+..+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4555666999999999999999888888888877778877765421 122345778888888887767777777755432


Q ss_pred             ceee---------eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE---EEeeec-------CcCeEEEEE
Q 021459           97 FDCL---------KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT---RVIRAH-------SMPVTSVHF  157 (312)
Q Consensus        97 ~~~~---------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~-------~~~v~~~~~  157 (312)
                      ...+         ......+...-.++|+|..+.|+.+-+..-+.+|........   .....+       -..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            1111         111111334567899999999888888777777766533211   111111       124667888


Q ss_pred             ccC-CCEEEEeeCCCeEEEEeCCC
Q 021459          158 NRD-GSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       158 ~~~-~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ++. +.+++.+.+++.+.-.|...
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCC
Confidence            864 45566666677776666543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.003  Score=53.95  Aligned_cols=132  Identities=19%  Similarity=0.245  Sum_probs=84.5

Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-------EEEEEecCCeEEEEEcCCCc--EEEEEEccC
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-------FILVGTLDSTLKLWNYSAGK--FLKIYTGHT  234 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~  234 (312)
                      +..+.....++-.|+..|+.+.+...+.+  +..+.+.|+.+       .-++|-.++.|.-||.+-..  .+..-+++.
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            34555566778888888888776654433  45555555532       12446678889999987432  233333332


Q ss_pred             Cc-eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          235 NK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       235 ~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      -. .+... ++......+++.||.+|.|++||--...--..+++-..+|..|..+.+|.+++...
T Consensus       427 y~~k~nFs-c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  427 YSTKNNFS-CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccccccc-eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            11 11122 22223456899999999999999733333345788889999999999999888654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.043  Score=45.14  Aligned_cols=201  Identities=13%  Similarity=0.078  Sum_probs=109.1

Q ss_pred             EEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce--eeeee-
Q 021459           28 VKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD--CLKTL-  103 (312)
Q Consensus        28 ~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~--~~~~~-  103 (312)
                      -.|.++...|+ +--..+.|.-|+..+++..  ...+.+.+.++..-..+..|+++.  .-+.+++.++...  .+... 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~--~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR--VFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE--EEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            35677777444 4445677888887755431  222344555555555555565553  2345666543322  11111 


Q ss_pred             ecc-cccEEEEEEecCCCEEEEeec-----------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-C
Q 021459          104 RGH-SDFVFCVNFNPQSNLIVSGSF-----------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-D  170 (312)
Q Consensus       104 ~~~-~~~v~~~~~~~~~~~l~s~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d  170 (312)
                      .+. ...-......|+|.+.++-..           -|.|+.+|. .+...+.+..+-..-+.++||||++.+..+.. .
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            111 122345667788776554333           133544454 45555544443444578999999987766544 4


Q ss_pred             CeEEEEeCCC--Cc----eeeEcccCCCCcEEEEEECCCCCEEEEEecCC-eEEEEEcCCCcEEEEEEccC
Q 021459          171 GTCKIWDAGE--GA----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-TLKLWNYSAGKFLKIYTGHT  234 (312)
Q Consensus       171 ~~i~iwd~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~  234 (312)
                      +.|.-|++..  +.    ...............++.+.+|.+.+++...| .|..|+.. ++.+..+....
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            6777776542  11    11111111223334456778888776555554 89999987 88887776553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.44  E-value=0.08  Score=47.35  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=86.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-EEEEEEcc--CCCeEEEEcC------CCeEEEEeCCCCceeeeeee-
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSS--DSHYICSASD------DRTLRIWDARTPFDCLKTLR-  104 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~-  104 (312)
                      ..++.++.|+.+.-.|..+++.+.+....... -..+.-+|  .+..++++..      +|.|..+|.+++...-+... 
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            45667778899999999999887664421100 00111112  1234444432      67888888877543211100 


Q ss_pred             -c---------------------------c-cccE-EEEEEecCCCEEEEeecC-----C-----------cEEEEEcCC
Q 021459          105 -G---------------------------H-SDFV-FCVNFNPQSNLIVSGSFD-----E-----------SIRIWEVKT  138 (312)
Q Consensus       105 -~---------------------------~-~~~v-~~~~~~~~~~~l~s~~~d-----g-----------~i~~wd~~~  138 (312)
                       .                           + ...+ ..+++.|+.++++.+..+     +           +|.-.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence             0                           0 0111 134666766666655422     2           566678889


Q ss_pred             CeEEEEeeecCcCe---------EEEEEccCCC---EEEEeeCCCeEEEEeCCCCcee
Q 021459          139 GKCTRVIRAHSMPV---------TSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACL  184 (312)
Q Consensus       139 ~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~  184 (312)
                      |+..-.++.....+         .-+....+|+   .++.+.++|.+.+.|-++++.+
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            98876665432221         1222334665   7789999999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.053  Score=45.23  Aligned_cols=168  Identities=20%  Similarity=0.301  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCC----eEEEEe--eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc-eeeEcccCCCCcEEEEEEC
Q 021459          129 ESIRIWEVKTG----KCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA-CLKTLIDDKDPAVSFAKFS  201 (312)
Q Consensus       129 g~i~~wd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  201 (312)
                      |.|.++++...    ..+..+  ...+++|+++.-- ++. ++++. .+.+.+|++...+ ....-..+....+..+  .
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl--~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL--S  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE--E
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEE--e
Confidence            88999999874    222222  2346788888765 444 44433 4789999988776 4332222222233333  3


Q ss_pred             CCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch-------h-ee
Q 021459          202 PNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-------T-MI  272 (312)
Q Consensus       202 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~-~~  272 (312)
                      ..++++++|.....+.++.++. +..+..+.......+...+.+. .+++.++.+..+|.+.++.....       . .+
T Consensus       137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred             ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence            3466999999888888876554 3334444443444444444444 23468999999999999877521       1 12


Q ss_pred             ecc-cCC-ccceEEE---EEcCC--C------ceEEEeeecCC
Q 021459          273 QKL-DGH-TDSVISV---TCHPT--E------NKIASAGLDGD  302 (312)
Q Consensus       273 ~~~-~~h-~~~v~~l---~~~p~--~------~~l~~~~~dgd  302 (312)
                      ... .-| ...|+++   .+.|.  +      ..++.++.+|.
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~  258 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS  258 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence            211 112 3567777   44552  2      24777777764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0058  Score=56.59  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      .+..++.|++.|.+...|+.........-..-.++|.+++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            35578888888888888876532211222233578999999999999999999999999999999988888777766544


Q ss_pred             E---EEccCCCEEEEeeCCCe
Q 021459          155 V---HFNRDGSLIVSGSHDGT  172 (312)
Q Consensus       155 ~---~~~~~~~~l~~~~~d~~  172 (312)
                      +   .+..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            3   34456667788777775

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.39  E-value=0.053  Score=48.87  Aligned_cols=221  Identities=17%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             CCCCCEEEEEeCCC------eEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCC-C-----eEEEEeCCCCc
Q 021459           31 SNDGTLLASASLDK------TVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDD-R-----TLRIWDARTPF   97 (312)
Q Consensus        31 s~~~~~l~t~~~d~------~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~-----~v~~wd~~~~~   97 (312)
                      +..+.+++.||.++      .+..+|..+........ .....-.+++.. ++...++|+.| |     .+..||..+..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            33456777777763      56778877653322111 111222333333 45677788888 3     56778876532


Q ss_pred             e-eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEEEEeeecCcCeEEEE-EccCCCEEEEeeCC
Q 021459           98 D-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCTRVIRAHSMPVTSVH-FNRDGSLIVSGSHD  170 (312)
Q Consensus        98 ~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d  170 (312)
                      - .+..+....... .++ .-+|...+.||.||     +|..||..+.+-...-. ...+..... ..-+|.+.++|+.+
T Consensus       361 W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~  437 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGD  437 (571)
T ss_pred             eeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcC
Confidence            1 111111111111 111 12567888888886     48888887765322111 111111111 12367888888855


Q ss_pred             C------eEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCCEEEEEecCC-----eEEEEEcCCCcEEEEEEccCCcee
Q 021459          171 G------TCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGKFILVGTLDS-----TLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       171 ~------~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      +      .+..||..++.......-... ....  ...-++...++|+.|+     +|..||..+.+....-.-.. ...
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-~rs  514 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-PRS  514 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-ccc
Confidence            4      467888887765432111111 1111  2233677888888776     36778887776644311111 111


Q ss_pred             EEEEEEEccCCcEEEEeecCCe
Q 021459          239 CITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      ...  ...-++...+.|+.||.
T Consensus       515 ~~g--~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  515 AVG--VVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccc--EEEECCEEEEEecccCc
Confidence            111  11235677788877653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.34  E-value=0.021  Score=38.60  Aligned_cols=100  Identities=15%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           25 VSCVKFSN---DG-TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        25 v~~~~~s~---~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      |+++++..   || +.|+.|+.|..||+|+-.  +.+..+. ..+.|.+++-... ..++.+..+|+|-+|+-...   +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence            56666654   33 579999999999999644  4444444 3467788877666 46777889999999986432   2


Q ss_pred             eeeecccccEEEEEE-ec--CC-CEEEEeecCCcEE
Q 021459          101 KTLRGHSDFVFCVNF-NP--QS-NLIVSGSFDESIR  132 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~-~~--~~-~~l~s~~~dg~i~  132 (312)
                      -..+.. ..+.++.+ ..  || ..|++|-.+|.|-
T Consensus        75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            122221 22444443 33  33 3578887778764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.24  E-value=0.094  Score=44.03  Aligned_cols=244  Identities=16%  Similarity=0.133  Sum_probs=109.2

Q ss_pred             eCCCcceEEEeeeccC-----CEEEEEEccCCCeEEEEcC-CC--eEEEEeCCCCceeeeeeeccc-ccEEEEEEecCCC
Q 021459           50 SASSLALVHRFVGHSE-----GISDLAWSSDSHYICSASD-DR--TLRIWDARTPFDCLKTLRGHS-DFVFCVNFNPQSN  120 (312)
Q Consensus        50 ~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~-d~--~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  120 (312)
                      |..++..+.++..+..     ..+.=+|.++|+.|+.++. ||  .+.+.|+.+..  +.++.... .......++|+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~   93 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR   93 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence            5556655555543222     2223367889976665544 54  56666887742  33333221 2222345678888


Q ss_pred             EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE--ccCCCEEEEeeC----------------------CCeEEEE
Q 021459          121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSH----------------------DGTCKIW  176 (312)
Q Consensus       121 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------d~~i~iw  176 (312)
                      .++-...+..|.-.|+++.+....+......+-...|  +.++..++-.-.                      ...|...
T Consensus        94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            7765555668888899998876666655554433444  345555432211                      1224445


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC-----eEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-----TLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      |+.+++....+ . ....+..+.++|....+++-+.+|     .-|||-++. +...+.+..+.. ...+.--++.++|.
T Consensus       174 dl~tG~~~~v~-~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  174 DLKTGERKVVF-E-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGS  250 (386)
T ss_dssp             ETTT--EEEEE-E-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS
T ss_pred             ECCCCceeEEE-e-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCC
Confidence            66666543322 1 234456677888776666654443     125665432 333333333333 23445556677777


Q ss_pred             EEEE-----eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeec
Q 021459          251 YIVS-----GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       251 ~l~~-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d  300 (312)
                      .|.-     ++.+..|.-+|+.+.+....  ....+...+..++++..++-=|.|
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEE--EeCCceeeeEEcCCCCEEEecCCC
Confidence            6543     23345677778776544221  122245566678898877655543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.23  E-value=0.029  Score=37.95  Aligned_cols=100  Identities=16%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             EEEEEEcc---CC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           67 ISDLAWSS---DS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        67 v~~~~~~~---~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      |+++++..   +| +.|++|+.|..|++|+-..   .+..+.. .+.+.++..... ..++.+-.+|+|-+|+-.. + +
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-R-l   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-R-L   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-e-e
Confidence            56666654   33 5899999999999998543   3444443 355666766554 6788889999999998532 2 2


Q ss_pred             EEeeecCcCeEEEEEcc-CC---CEEEEeeCCCeEE
Q 021459          143 RVIRAHSMPVTSVHFNR-DG---SLIVSGSHDGTCK  174 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~i~  174 (312)
                      -..+... .+.++.+.. ++   ..|++|=.+|.|-
T Consensus        75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222222 245554433 32   2577777777764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0085  Score=51.33  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=92.0

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-------eEEEEcCCCeEEEEeCCCCce-eeeee
Q 021459           33 DGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-------YICSASDDRTLRIWDARTPFD-CLKTL  103 (312)
Q Consensus        33 ~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~wd~~~~~~-~~~~~  103 (312)
                      +.++|+ ++.....+.--|++.|+.+..+.-+.. |.-+.+.|+.+       .-+.|-++..|+-||++-... .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            344444 344555677778999999888887766 66677777643       124567788999999864222 12222


Q ss_pred             eccc----ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          104 RGHS----DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       104 ~~~~----~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      ++|.    ..-.|.+-. ...+++.|+.+|.|++||--..+....+.+-..+|..+..+.+|+++++.+ +..+.+.++
T Consensus       423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            2221    122343333 345889999999999999632233345666778999999999999877554 445666554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.21  E-value=0.00059  Score=51.85  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEE-EE
Q 021459           79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTS-VH  156 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~-~~  156 (312)
                      +..-+.|+.|.-++++......+...-+.....-+   .-+..++.|+.+|.|++|.....-.. ..+......+.+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            33446677777777654322222222232221111   22467899999999999987621111 011111122222 22


Q ss_pred             EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcC
Q 021459          157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYS  222 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~  222 (312)
                      -..++.+..++..+|.|+.|+..-++.+-..-.+.............+.+++.+  +.|..++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            223455788999999999999876654433222221222333333344555555  555566666654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.1  Score=43.02  Aligned_cols=220  Identities=12%  Similarity=0.116  Sum_probs=115.9

Q ss_pred             EEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-
Q 021459           70 LAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-  147 (312)
Q Consensus        70 ~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-  147 (312)
                      ..|.++...|+ +--..+.|.-|+..++......   +.+.+.+...-..+..|+++..  .+.+++..++.....+.. 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            45677666444 4344567888887654332222   2223333333333445554432  366667665554222211 


Q ss_pred             ----cCcCeEEEEEccCCCEEEEeeC-----------CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-
Q 021459          148 ----HSMPVTSVHFNRDGSLIVSGSH-----------DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-  211 (312)
Q Consensus       148 ----~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  211 (312)
                          .....+.....|+|.+.++...           -|.+..+|. .+...+.. ...-.....++||||++.|..+. 
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeC
Confidence                1134567888899987775444           133444443 33333322 22122334578999998877774 


Q ss_pred             cCCeEEEEEcCC--Cc----EEEEEEcc-CCceeEEEEEEEccCCcEEEEeecCC-eEEEEECCchheeecccCCccceE
Q 021459          212 LDSTLKLWNYSA--GK----FLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSEDN-CVYVWDLQQKTMIQKLDGHTDSVI  283 (312)
Q Consensus       212 ~d~~i~v~d~~~--~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~  283 (312)
                      ..+.|.-|++..  +.    ........ ......+   ....+|.+-+++..+| .|..|+.. ++++..+.-....+.
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~---~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t  258 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM---AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT  258 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCce---EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence            457888887752  11    11111111 1111111   1123566664444443 89999987 777777766657778


Q ss_pred             EEEEc-CCCceEEEeeec
Q 021459          284 SVTCH-PTENKIASAGLD  300 (312)
Q Consensus       284 ~l~~~-p~~~~l~~~~~d  300 (312)
                      +++|- |+.+.|...+..
T Consensus       259 ~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         259 NPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             cceEeCCCcCEEEEEecC
Confidence            88884 555665555443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0021  Score=36.24  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=27.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeC
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSA   51 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~   51 (312)
                      ...|.+++|+|..++||.+..+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456999999999999999999999999987

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.16  Score=44.05  Aligned_cols=221  Identities=17%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             EEEEEccCCCeEEEE-cCCC----eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC-----------cE
Q 021459           68 SDLAWSSDSHYICSA-SDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----------SI  131 (312)
Q Consensus        68 ~~~~~~~~~~~l~~~-~~d~----~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----------~i  131 (312)
                      ...+++|+++++|.+ +..|    .+++.|+.++......+...  ....+.|.++++.|+....+.           .|
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            357899999988855 3333    59999999874332222221  112389999988776554332           37


Q ss_pred             EEEEcCCCeEE--EEeeecCcC--eEEEEEccCCCEEEEeeCC----CeEEEEeCCCC----ceeeEcccCCCCcEEEEE
Q 021459          132 RIWEVKTGKCT--RVIRAHSMP--VTSVHFNRDGSLIVSGSHD----GTCKIWDAGEG----ACLKTLIDDKDPAVSFAK  199 (312)
Q Consensus       132 ~~wd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~  199 (312)
                      +.|.+.+....  ..++.....  ...+..++++++++.....    ..+.+.|+..+    .....+..........+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            78887765432  444443333  5678889999987753322    34777787764    223333333333333332


Q ss_pred             ECCCCCEEEEEe---cCCeEEEEEcCCCc---EEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--eEEEEECC-chh
Q 021459          200 FSPNGKFILVGT---LDSTLKLWNYSAGK---FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--CVYVWDLQ-QKT  270 (312)
Q Consensus       200 ~~~~~~~l~~~~---~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~-~~~  270 (312)
                      .. ++.+++...   ..+.|...++....   ....+..+........+  ....+.+++....++  .|.++++. ...
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            22 333444332   33567677776654   22233333332222221  122345555555554  47778888 433


Q ss_pred             eeecccCCccceEEEEEcCCCce
Q 021459          271 MIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       271 ~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      .......-.+.|..+...++.+.
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SE
T ss_pred             EeeecCCcceEEeccCCCCCCCE
Confidence            22221112334556655555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.10  E-value=0.24  Score=46.09  Aligned_cols=276  Identities=15%  Similarity=0.166  Sum_probs=137.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEe--CCCcceEEEe--eeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCce
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWS--ASSLALVHRF--VGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~--~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      +|....+--|..+|..+..||.+.-+.  ..++..-.+-  .--+.++.--.|+..+ +.+++++ |+=..+|.-+. .-
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~-kL  662 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNG-KL  662 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCC-cE
Confidence            333444545567888888899887654  4444332111  1123455555566544 4555544 44444554322 11


Q ss_pred             eeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEE--EEeeecCcCeEEEEEccCCCEEEEeeCC----
Q 021459           99 CLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNRDGSLIVSGSHD----  170 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  170 (312)
                      ....+.- ...-.-+.|+.+  ...++++. .+.+++.-+..-+.+  +++..+ .....+++.+....+.+.+..    
T Consensus       663 v~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~  739 (1096)
T KOG1897|consen  663 VYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESS  739 (1096)
T ss_pred             EEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccc
Confidence            1111100 000011223222  23344443 445666655432222  222222 234455565533333333221    


Q ss_pred             ----------CeEEEEeCCCCceeeEcccCCCC---cEEEEEECCC-CCEEEEEec----------CCeEEEEEcCCCcE
Q 021459          171 ----------GTCKIWDAGEGACLKTLIDDKDP---AVSFAKFSPN-GKFILVGTL----------DSTLKLWNYSAGKF  226 (312)
Q Consensus       171 ----------~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~  226 (312)
                                ..++++|..+-+.+........+   .+..+.|..| +.++++|+.          .|.|.+|.+.....
T Consensus       740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence                      13566776655444332222222   2333446666 677777752          47788888777444


Q ss_pred             EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      ++....+.-...+....  .-+|+++|.  -+..|++|++.+.+.+..-..+..++..+...-.+..++.|-.-+.-++.
T Consensus       820 L~~v~e~~v~Gav~aL~--~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALV--EFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeeeeeeccceeehh--hhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            44433222222222222  235777664  45689999998876666666677788888888888888887654433443


Q ss_pred             EE
Q 021459          307 VW  308 (312)
Q Consensus       307 iw  308 (312)
                      .+
T Consensus       896 ~y  897 (1096)
T KOG1897|consen  896 QY  897 (1096)
T ss_pred             EE
Confidence            33

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.0054  Score=56.79  Aligned_cols=105  Identities=18%  Similarity=0.276  Sum_probs=72.8

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      .+..++.|+..|.+-..|...+-.....-......++.++|+.+|..++.|-.+|.|.+||...++.++.+..+..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            45568888888998888876542211111223456888999999999999999999999999999888877665544333


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      +.......++..+.++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            333333344556777777775  6654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.99  E-value=0.14  Score=41.56  Aligned_cols=218  Identities=15%  Similarity=0.151  Sum_probs=114.3

Q ss_pred             cCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe--------
Q 021459           74 SDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI--------  145 (312)
Q Consensus        74 ~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--------  145 (312)
                      ..++.|+.|..+| +.+++........+..  +...|..+...|+-+.+++-+ |+.+.++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899998888 8999884332222222  223388888888888777665 499999998654322210        


Q ss_pred             ------eecCcCeEEEE--EccCCCEEEEeeCCCeEEEEeCCCC-----ceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          146 ------RAHSMPVTSVH--FNRDGSLIVSGSHDGTCKIWDAGEG-----ACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       146 ------~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                            ......+...+  -...+...++......|.+|.....     ...+++...  ..+..+.|.  ++.++.|..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeC
Confidence                  01112233333  1123344444445558888766542     233443322  334455565  557777764


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCc---------eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee--cccCCccc
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNK---------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ--KLDGHTDS  281 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~  281 (312)
                      + ...+.|+.++.....+......         ...+. .+..+++++|++-  |..-.+.|.. ++...  .+.- ...
T Consensus       157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~  230 (275)
T PF00780_consen  157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSA  230 (275)
T ss_pred             C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCc
Confidence            4 5778898877654443211111         11122 2223445666653  3333333432 32222  1221 224


Q ss_pred             eEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          282 VISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       282 v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ...+++.  .++|+..+.   ..|.||++
T Consensus       231 p~~~~~~--~pyli~~~~---~~iEV~~~  254 (275)
T PF00780_consen  231 PQSVAYS--SPYLIAFSS---NSIEVRSL  254 (275)
T ss_pred             hhEEEEE--CCEEEEECC---CEEEEEEC
Confidence            4566663  356766553   35888765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.96  E-value=0.2  Score=42.92  Aligned_cols=81  Identities=15%  Similarity=0.322  Sum_probs=55.7

Q ss_pred             CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-----------------CEEE-EEec
Q 021459          151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-----------------KFIL-VGTL  212 (312)
Q Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~-~~~~  212 (312)
                      .+.++..+|++++.++...-|.|.++|+.++..++...+..+..+..+.....+                 .+|+ -+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            367889999999888887789999999999888877766555555443322211                 1222 2455


Q ss_pred             CCeEEEEEcCCCcEEEEEE
Q 021459          213 DSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~  231 (312)
                      -|.|.||.++.+..+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            6788888888887665543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.92  E-value=0.22  Score=42.71  Aligned_cols=82  Identities=12%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC---------------Cc-EEEEeec
Q 021459          194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN---------------GK-YIVSGSE  257 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~l~~~~~  257 (312)
                      ....+..+|++++.++...=|+|.++|...+..++.+++..+............+               .. +++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            3456789999998888777799999999999888888776654322211111110               11 2344667


Q ss_pred             CCeEEEEECCchheeecc
Q 021459          258 DNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       258 dg~i~iwd~~~~~~~~~~  275 (312)
                      -|.|.||.++++..+..+
T Consensus       389 Rg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CCeEEEEecCCCCEEEEE
Confidence            888999998877665443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.89  E-value=0.16  Score=40.69  Aligned_cols=145  Identities=17%  Similarity=0.229  Sum_probs=86.6

Q ss_pred             ceEEEEECCCCCEEEEEe---CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe-CCCCcee
Q 021459           24 AVSCVKFSNDGTLLASAS---LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD-ARTPFDC   99 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd-~~~~~~~   99 (312)
                      .+...+++++++.+|...   ....++++.....  ..... ....+....|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999999877655   3345555543322  22221 223677889999988777766666666663 2222111


Q ss_pred             eeeee--cccccEEEEEEecCCCEEEEee---cCCcEEEEEcC---CC--eE----EEEeeecCcCeEEEEEccCCCEEE
Q 021459          100 LKTLR--GHSDFVFCVNFNPQSNLIVSGS---FDESIRIWEVK---TG--KC----TRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus       100 ~~~~~--~~~~~v~~~~~~~~~~~l~s~~---~dg~i~~wd~~---~~--~~----~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      .....  .-.+.|..+.++|||..++...   .++.|.+--+.   .+  ..    ..........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            11111  1112799999999999876554   34667766542   22  11    111112245788999999988777


Q ss_pred             EeeCCC
Q 021459          166 SGSHDG  171 (312)
Q Consensus       166 ~~~~d~  171 (312)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=96.85  E-value=0.16  Score=45.71  Aligned_cols=187  Identities=14%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             cCCCEEEEeecCC------cEEEEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCC-----CeEEEEeCCCCce
Q 021459          117 PQSNLIVSGSFDE------SIRIWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEGAC  183 (312)
Q Consensus       117 ~~~~~l~s~~~dg------~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~  183 (312)
                      .++..++.|+.++      .+..||..+++-...-..  .......+  .-+++.++.|+.+     ..+..||..+++.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3455666776542      477888877654321110  11111122  2367777777765     3467788877654


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEEecC------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLD------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      ...... ..+........-+++..+.|+.+      +.+..||..+++....-...... .....  ...++.+.+.|+.
T Consensus       371 ~~~~~l-p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~--~~~~~~iyv~GG~  446 (534)
T PHA03098        371 REEPPL-IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCA--IYHDGKIYVIGGI  446 (534)
T ss_pred             eeCCCc-CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceE--EEECCEEEEECCc
Confidence            321110 01111111122356677777632      45788898776654321111111 11111  1134667777764


Q ss_pred             C--------CeEEEEECCchh--eeecccCCccceEEEEEcCCCceEEEeeecCC---eeEEEEeec
Q 021459          258 D--------NCVYVWDLQQKT--MIQKLDGHTDSVISVTCHPTENKIASAGLDGD---RTVRVWVQD  311 (312)
Q Consensus       258 d--------g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd---~~v~iw~~~  311 (312)
                      +        ..+.+||..+.+  .+..+.........+.+  ++..++.||.++.   ..|..++++
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence            3        238888886543  22222211111112222  6667777775533   356666653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.84  E-value=0.27  Score=42.51  Aligned_cols=49  Identities=12%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                      .|++|+....  .+....-..+.+.++.|..+ +.|+.-..||.+++||+..
T Consensus        62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence            4777765432  23222212267889999875 5566667899999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.84  E-value=0.2  Score=41.03  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=71.8

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc-CCCeE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV-KTGKC  141 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~-~~~~~  141 (312)
                      -...+..+.-+++|+++++++.-..+.-||.....- ....+.-...|..+.|.|++.+.+.+ ..|.|++=+. .....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            346788888899999998876555556777543211 11122245689999999998776654 7888887662 11111


Q ss_pred             EEE----eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459          142 TRV----IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTL  216 (312)
Q Consensus       142 ~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
                      -..    .......+..++|.++++..++|+...-++--|-... -.+.. .......+..+.|.+..+-++ -+.+|.|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l  298 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL  298 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence            111    1112234788999998888877666533333332211 11111 112223344445544444444 4467766


Q ss_pred             EEE
Q 021459          217 KLW  219 (312)
Q Consensus       217 ~v~  219 (312)
                      --|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>PHA03098 kelch-like protein; Provisional

Probab=96.79  E-value=0.21  Score=44.99  Aligned_cols=187  Identities=12%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             CCCEEEEEeCCC------eEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCC-----CeEEEEeCCCCce-
Q 021459           33 DGTLLASASLDK------TVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDD-----RTLRIWDARTPFD-   98 (312)
Q Consensus        33 ~~~~l~t~~~d~------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~~-   98 (312)
                      ++.+++.||.++      .+..||..+.+....  +....... +++ .-++...+.|+.+     ..+..||..+..- 
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455566666542      456677665443211  01001111 121 2256677777765     3466777765321 


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecC------CcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCC-
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHD-  170 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-  170 (312)
                      ....+.. ...-.+++ .-+++.++.||.+      ..+..||+.+++-...-.... ..-.++ ...++..++.|+.+ 
T Consensus       372 ~~~~lp~-~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIF-PRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCc-CCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence            1111111 11111122 2345667777632      357889988765322111000 001122 22356677777643 


Q ss_pred             -------CeEEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcE
Q 021459          171 -------GTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKF  226 (312)
Q Consensus       171 -------~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~  226 (312)
                             ..+..||..+++....-... .......+..  +++.++.|+.+     +.+.+||..+.+.
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                   23788898876543321100 1111122222  56666777654     4577777766554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.76  E-value=0.2  Score=39.91  Aligned_cols=95  Identities=18%  Similarity=0.333  Sum_probs=62.9

Q ss_pred             EEEEEccC-CCeEEEEcCCCe-EEEEeCCCCceee-------eeeecccccEEEEEEecCCCEEEEeecC-----CcEEE
Q 021459           68 SDLAWSSD-SHYICSASDDRT-LRIWDARTPFDCL-------KTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRI  133 (312)
Q Consensus        68 ~~~~~~~~-~~~l~~~~~d~~-v~~wd~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~  133 (312)
                      ..++++|. ..-++.+-.-|+ ..++|.....+.+       +.+.+|      -.|+|||.+|+..-.|     |.|-+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEE
Confidence            35777775 345566655564 4567776543322       123344      3589999998876443     67899


Q ss_pred             EEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459          134 WEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       134 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ||.+.+ +.+..+..|......+.+.+||+.++.+.
T Consensus       145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            998754 33456667777777889999999888753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.73  E-value=0.4  Score=42.97  Aligned_cols=190  Identities=13%  Similarity=0.129  Sum_probs=107.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeecc-CCEEE----------EEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHS-EGISD----------LAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      +..|+.++.++.|.-.|..+++.+.+..... ..+..          +++  .+..++.++.|+.+.-.|..++..+-+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778889889999998877654211 11111          111  2346777788999999998887543322


Q ss_pred             eec-cc--ccEEE-EEEecCCCEEEEee------cCCcEEEEEcCCCeEEEEeeecC-----------------------
Q 021459          103 LRG-HS--DFVFC-VNFNPQSNLIVSGS------FDESIRIWEVKTGKCTRVIRAHS-----------------------  149 (312)
Q Consensus       103 ~~~-~~--~~v~~-~~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~-----------------------  149 (312)
                      ... +.  ..+.+ .... ++ .++.+.      .+|.|.-+|.++|+.+-.+..-.                       
T Consensus       147 ~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            111 11  01111 1111 33 444443      26789999999988664432110                       


Q ss_pred             --------cCe-EEEEEccCCCEEEEeeCC-----C-----------eEEEEeCCCCceeeEcccC-C-----C--CcEE
Q 021459          150 --------MPV-TSVHFNRDGSLIVSGSHD-----G-----------TCKIWDAGEGACLKTLIDD-K-----D--PAVS  196 (312)
Q Consensus       150 --------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~-~-----~--~~~~  196 (312)
                              ..+ ..+++.|...++..+..+     +           .|.-.|+++++..-.+... +     +  ....
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                    011 134566655566555422     1           4555677777654333211 1     1  1122


Q ss_pred             EEEECCCCC---EEEEEecCCeEEEEEcCCCcEE
Q 021459          197 FAKFSPNGK---FILVGTLDSTLKLWNYSAGKFL  227 (312)
Q Consensus       197 ~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~  227 (312)
                      .+....+|+   .++.+..+|.++++|..+++.+
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            233345665   7788999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.71  E-value=0.21  Score=42.61  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             ceEEEEECCCCCEEEEEe-----------CCC-eEEEEeCCC--cce--EEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           24 AVSCVKFSNDGTLLASAS-----------LDK-TVIIWSASS--LAL--VHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~-----------~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ....++|.++|++.++-.           ..+ .|.+++-.+  ++.  ...+.........+++.+++ ++ +++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeE
Confidence            455789999999877742           223 677765432  221  22222223345789998888 44 4444443


Q ss_pred             EEEEeCCC------Cceee-eeeec----ccccEEEEEEecCCCEEEEeecC-------------------CcEEEEEcC
Q 021459           88 LRIWDART------PFDCL-KTLRG----HSDFVFCVNFNPQSNLIVSGSFD-------------------ESIRIWEVK  137 (312)
Q Consensus        88 v~~wd~~~------~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~s~~~d-------------------g~i~~wd~~  137 (312)
                      .++.|...      ..+.+ ..+..    +......+.|.||+.+.++-+..                   |.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            33445432      11112 12221    12346678999999877655521                   345555555


Q ss_pred             CCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459          138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      .++....-..+ .....++|+|+|+++++-.
T Consensus       173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            44432221222 2246789999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.63  E-value=0.17  Score=44.49  Aligned_cols=149  Identities=11%  Similarity=0.254  Sum_probs=86.3

Q ss_pred             CCEEEEEEccCCCeEEEEc--CCCeEEEEeCCCCceeeeeeecccccEEEEEEecC----CCEEEEeecCCcEEEEEcC-
Q 021459           65 EGISDLAWSSDSHYICSAS--DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ----SNLIVSGSFDESIRIWEVK-  137 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~--~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~~wd~~-  137 (312)
                      .++..++|..-.+.+++.-  .+|.+++=|.    ..+    |.-..|..++|.|-    ...+++.-....|.+|.+. 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4678899974334455532  2333333221    122    23345788999884    3356666778889999885 


Q ss_pred             ----CCeEEEEeeec---CcC--eEEEEEccCCCEEEEeeCCCeEEEEeCCCCc-eeeEcccCCCCcEEEEEECCCCCEE
Q 021459          138 ----TGKCTRVIRAH---SMP--VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA-CLKTLIDDKDPAVSFAKFSPNGKFI  207 (312)
Q Consensus       138 ----~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  207 (312)
                          +++.+.....+   ..+  -..+.|+|....+++-.....-.+++++... .++.-. ...+.+.+++|.+||+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence                22222222111   122  2467899998888776665554555554322 222212 345678899999999988


Q ss_pred             EEEecC-CeEEEEEcC
Q 021459          208 LVGTLD-STLKLWNYS  222 (312)
Q Consensus       208 ~~~~~d-~~i~v~d~~  222 (312)
                      +++-.+ =.-++||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            876433 345788853

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.59  E-value=0.011  Score=33.34  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      ...|..+.|+|...++|.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            346899999999999999999999999987

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.57  E-value=0.64  Score=43.13  Aligned_cols=29  Identities=21%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEE
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIW   49 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw   49 (312)
                      -.-.|..+.++|+|.+||..|..|...+.
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~  111 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLE  111 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            44578899999999999999887755443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=96.48  E-value=0.73  Score=42.83  Aligned_cols=112  Identities=10%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             cceEEEEECCCCCEEEEEe-----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC------CeEEEE
Q 021459           23 RAVSCVKFSNDGTLLASAS-----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD------RTLRIW   91 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~~w   91 (312)
                      -.+..+.+|||+++|+.+-     ....|++.++.++..+.......  -..++|.+|++.|+-...+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3567789999999887652     22357788888776432221111  1469999998866554332      367778


Q ss_pred             eCCCCcee-eeeeecccccEE-EEEEecCCCEEEEeec---CCcEEEEEc
Q 021459           92 DARTPFDC-LKTLRGHSDFVF-CVNFNPQSNLIVSGSF---DESIRIWEV  136 (312)
Q Consensus        92 d~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~~~---dg~i~~wd~  136 (312)
                      ++.++... ...+........ ....+.++++++..+.   ++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88776221 112222222222 3333447776554333   356888884

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.057  Score=50.80  Aligned_cols=185  Identities=18%  Similarity=0.145  Sum_probs=104.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----------eE-----EEeeec-cCCEEEEEEccCCCeEEEE--cC
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----------LV-----HRFVGH-SEGISDLAWSSDSHYICSA--SD   84 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----------~~-----~~~~~~-~~~v~~~~~~~~~~~l~~~--~~   84 (312)
                      .-+.++.++....++.++..+.+.|+-..+.-           ++     ..+.-| .-.+..+...+|+...++.  +.
T Consensus        43 ~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn  122 (1405)
T KOG3630|consen   43 SSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN  122 (1405)
T ss_pred             hhhhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC
Confidence            34456778877777777777877776433210           00     112222 2345566677776654433  34


Q ss_pred             CCeEEEEeCCCCce-------eee---eeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE
Q 021459           85 DRTLRIWDARTPFD-------CLK---TLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT  153 (312)
Q Consensus        85 d~~v~~wd~~~~~~-------~~~---~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  153 (312)
                      +-.|..||++.-..       .++   ..........++.|+|.-. ..+.+..|+.|++..+........-.......+
T Consensus       123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~T  202 (1405)
T KOG3630|consen  123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQT  202 (1405)
T ss_pred             CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCccccee
Confidence            44788999864111       111   1111223456788887532 345566788888776643221111112234578


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc---cCCCCcEEEEEECCCCCEEEE
Q 021459          154 SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI---DDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      +++|+|.|+.++.|-..|++.-|...- +..+.+.   ......+..+.|-....++++
T Consensus       203 av~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  203 AVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            999999999999999999999886543 2222221   112344566666665556554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.25  E-value=0.64  Score=39.74  Aligned_cols=202  Identities=14%  Similarity=0.199  Sum_probs=91.3

Q ss_pred             cceEEEEEC-----------CCCCEEEEEe-CCCeEEEEeCCCc----ceEEEeee---cc----CCEEEEEEccCCCeE
Q 021459           23 RAVSCVKFS-----------NDGTLLASAS-LDKTVIIWSASSL----ALVHRFVG---HS----EGISDLAWSSDSHYI   79 (312)
Q Consensus        23 ~~v~~~~~s-----------~~~~~l~t~~-~d~~i~vw~~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~l   79 (312)
                      ++....-|+           .+.++|+..+ .+..|.|.|+.+.    ++...++.   +.    ..-..+..-|+|+++
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            455556665           2456777766 6788999998742    23333332   11    122334455789888


Q ss_pred             EEEcC------CCeEEEEeCCCCceeeeeeec---ccccEEEEEEecCCCEEEEeec--------------------CCc
Q 021459           80 CSASD------DRTLRIWDARTPFDCLKTLRG---HSDFVFCVNFNPQSNLIVSGSF--------------------DES  130 (312)
Q Consensus        80 ~~~~~------d~~v~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~--------------------dg~  130 (312)
                      +++-.      -|-+.++|-++ .+.....+.   ....-...-|.|..+.++|...                    ..+
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~  223 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGET-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHS  223 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--E
T ss_pred             EEeccCCCCCCCCcEEEEcCcc-ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCe
Confidence            87632      24577777664 333333322   2234566778888888888654                    357


Q ss_pred             EEEEEcCCCeEEEEeeecC--cCeEEEEEcc--CCCE-EEEeeCCCeEEEEeC-CCCcee----eEccc-----C-----
Q 021459          131 IRIWEVKTGKCTRVIRAHS--MPVTSVHFNR--DGSL-IVSGSHDGTCKIWDA-GEGACL----KTLID-----D-----  190 (312)
Q Consensus       131 i~~wd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~d~~i~iwd~-~~~~~~----~~~~~-----~-----  190 (312)
                      +.+||+.+.+.++++....  .....+.|..  +..+ ++.+.-...|..|-. ..+...    ..+..     .     
T Consensus       224 l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m  303 (461)
T PF05694_consen  224 LHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM  303 (461)
T ss_dssp             EEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred             EEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence            9999999999888876432  2244556644  3333 333333444444422 333211    11110     0     


Q ss_pred             ------CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCc
Q 021459          191 ------KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGK  225 (312)
Q Consensus       191 ------~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~  225 (312)
                            -.+.++.+.+|.|.++|.++. .+|.|+.||+.+..
T Consensus       304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  304 LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                  023456777999999988775 58999999997754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=96.21  E-value=0.82  Score=40.59  Aligned_cols=185  Identities=10%  Similarity=0.025  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCCC-----eEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEEEEee
Q 021459           75 DSHYICSASDDR-----TLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        75 ~~~~l~~~~~d~-----~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~  146 (312)
                      ++.++++|+.++     .+..||..+..- .+..+...... .+++ .-++...+.||.+  .++..||..+++-...-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            345556666542     466788765321 11111111111 1121 2356677777754  358888877654322111


Q ss_pred             ecCcCeEEEEEccCCCEEEEeeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          147 AHSMPVTSVHFNRDGSLIVSGSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      -...........-+|+..+.|+.++   .+..||..+++........ .+........-+++..+.|+   .+.+||..+
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKSCALVFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-CccccceEEEECCEEEEECC---ceEEecCCC
Confidence            1110111111223677778777653   4678888776544321111 11111112233566666663   467888877


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCc
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQ  268 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  268 (312)
                      ++....-...... ......  .-++++.+.|+.+     ..|..||..+
T Consensus       425 ~~W~~~~~m~~~r-~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        425 NTWTLIDDPIYPR-DNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CcEeEcCCCCCCc-cccEEE--EECCEEEEECCcCCCcccceEEEEECCC
Confidence            7664332111111 111111  2356777777754     2355555543

>PHA02790 Kelch-like protein; Provisional

Probab=96.10  E-value=0.94  Score=40.23  Aligned_cols=181  Identities=8%  Similarity=-0.000  Sum_probs=82.9

Q ss_pred             CCCEEEEEeCCC-----eEEEEeCCCcceEE--EeeeccCCEEEEEEccCCCeEEEEcCC--CeEEEEeCCCCc-eeeee
Q 021459           33 DGTLLASASLDK-----TVIIWSASSLALVH--RFVGHSEGISDLAWSSDSHYICSASDD--RTLRIWDARTPF-DCLKT  102 (312)
Q Consensus        33 ~~~~l~t~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~~wd~~~~~-~~~~~  102 (312)
                      ++.+.+.||.++     .+..||..+.+...  .+...... .+++ ..++...+.|+.+  ..+..||..+.. ..+..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            445567777543     45667766543221  11111111 1122 2366666777653  357778865421 11111


Q ss_pred             eecccccEEEEEEecCCCEEEEeecCC---cEEEEEcCCCeEEEE--eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFDE---SIRIWEVKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      +...... .++ ..-+++..+.||.++   .+..||.++++-...  +...... .++ ..-+++..+.|+   .+..||
T Consensus       349 l~~~r~~-~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG---~~e~yd  421 (480)
T PHA02790        349 LLKPRCN-PAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR---NAEFYC  421 (480)
T ss_pred             CCCCCcc-cEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC---ceEEec
Confidence            1111111 111 123566777777653   477888876643221  1101111 122 223666666663   467888


Q ss_pred             CCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCC
Q 021459          178 AGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAG  224 (312)
Q Consensus       178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~  224 (312)
                      ..+++...... .........+  --+++..++|+.+     ..+..||..++
T Consensus       422 p~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            87766543211 1111112222  2356677777654     23455555443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.08  E-value=0.57  Score=37.58  Aligned_cols=145  Identities=15%  Similarity=0.199  Sum_probs=84.3

Q ss_pred             CEEEEEEccCCCeEEEEc---CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE-cCCCeE
Q 021459           66 GISDLAWSSDSHYICSAS---DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE-VKTGKC  141 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~---~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~  141 (312)
                      .+.+.+++++++.++...   ....++++........  .+.+  ..+...+|++++...+....+....++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            678899999998777665   3345666655433222  1222  3567788999977666655555566653 333332


Q ss_pred             EE-Eeeec--CcCeEEEEEccCCCEEEEee---CCCeEEEEeCC---CC--cee---eEcccCCCCcEEEEEECCCCCEE
Q 021459          142 TR-VIRAH--SMPVTSVHFNRDGSLIVSGS---HDGTCKIWDAG---EG--ACL---KTLIDDKDPAVSFAKFSPNGKFI  207 (312)
Q Consensus       142 ~~-~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~l  207 (312)
                      .. .....  ...|..+.++|||..++...   .++.+.+--+.   .+  ..+   ..........+..+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            21 12211  12799999999999887665   24566554322   22  111   11111223456678899998877


Q ss_pred             EEEecCC
Q 021459          208 LVGTLDS  214 (312)
Q Consensus       208 ~~~~~d~  214 (312)
                      +.+...+
T Consensus       181 V~~~~~~  187 (253)
T PF10647_consen  181 VLGRSAG  187 (253)
T ss_pred             EEeCCCC
Confidence            7665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.05  E-value=1.3  Score=41.50  Aligned_cols=231  Identities=16%  Similarity=0.183  Sum_probs=114.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC--------EEEEEEc----------------cCCCeEEEEcCCCeEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--------ISDLAWS----------------SDSHYICSASDDRTLR   89 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~v~   89 (312)
                      +..|..++.++.|.-.|..+++.+.++......        ...+++-                .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777788888998999999888776532210        1112221                1344788888899999


Q ss_pred             EEeCCCCceeeeeeecccccE-------------EEEEEec--CCCEEEEeec----------CCcEEEEEcCCCeEEEE
Q 021459           90 IWDARTPFDCLKTLRGHSDFV-------------FCVNFNP--QSNLIVSGSF----------DESIRIWEVKTGKCTRV  144 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~s~~~----------dg~i~~wd~~~~~~~~~  144 (312)
                      -.|.+++..+-. +. ..+.+             ....-.|  .+..++.++.          +|.|+-+|.++|+..-.
T Consensus       274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            999888755422 11 11111             0011111  1345566542          58899999999997765


Q ss_pred             eeecCcCeEEEEEccCCCEEEEeeCCC-eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGSHDG-TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      +..-. +... ...+.++....++.+. ..-.+|...+...... ....+......-.+..     ....+.|.-.|.++
T Consensus       352 ~~~g~-p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~pd~~g~~r~~~~-----n~y~~slvALD~~T  423 (764)
T TIGR03074       352 WDPGN-PDPT-APPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTPDQWGGDRTPAD-----EKYSSSLVALDATT  423 (764)
T ss_pred             EecCC-CCcc-cCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccccccCCccccCc-----ccccceEEEEeCCC
Confidence            53211 1000 0011333333232221 2233444443322111 0000000000000100     11234555567777


Q ss_pred             CcEEEEEEccCCce-------eEEEEEEEccCC---cEEEEeecCCeEEEEECCchheeec
Q 021459          224 GKFLKIYTGHTNKK-------YCITSTFSVTNG---KYIVSGSEDNCVYVWDLQQKTMIQK  274 (312)
Q Consensus       224 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  274 (312)
                      |+..-.++......       ..+.......++   +.++.++++|.+.+.|..+++.+..
T Consensus       424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            77655444311100       011111111244   3789999999999999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.95  E-value=0.71  Score=41.81  Aligned_cols=110  Identities=21%  Similarity=0.314  Sum_probs=67.7

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe--cCCCEEEEeecCCcEEEEEcC-----C-
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN--PQSNLIVSGSFDESIRIWEVK-----T-  138 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~~wd~~-----~-  138 (312)
                      ..-+.-+.-++..++-+....+.|||.+.........-...+.|..+.|.  |+++.+++.+....|.+|--.     + 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            33444444444444444455799999976532222111346788888885  688899999999999988531     1 


Q ss_pred             C---eEEEEe--eec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          139 G---KCTRVI--RAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       139 ~---~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      +   ..++.+  ..+ ..+|.+..|.++|.+++.+  .+.+.++|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            1   112222  222 2578899999999766544  347788764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.85  E-value=0.72  Score=36.81  Aligned_cols=185  Identities=15%  Similarity=0.129  Sum_probs=104.5

Q ss_pred             ccEEEEEEecCCCEEEEeecCC--cEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDE--SIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL  184 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (312)
                      .....+.|..++.++-+.+.-|  .|+.+|+.+++......-.. .---.+... +++.....=.++...+||..+-+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            3455677767777777777665  69999999998765543222 112234443 3344455557788999999887777


Q ss_pred             eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc--eeEEEEEEEccCCcEEEEeecCCeEE
Q 021459          185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK--KYCITSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                      .++.-..+  -..++  .+++.|+.+..+..++++|..+-+..+.+......  ...+.-.-. -+|...|=.=....|.
T Consensus       124 ~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~  198 (264)
T PF05096_consen  124 GTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEE
T ss_pred             EEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEE
Confidence            66643322  22232  56778888877889999998777666554432211  111111111 2455555554555666


Q ss_pred             EEECCchheeeccc---------------CCccceEEEEEcCCCceEEEee
Q 021459          263 VWDLQQKTMIQKLD---------------GHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       263 iwd~~~~~~~~~~~---------------~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      ..|..++.....+.               ...+-.+.+|+.|..+.|...|
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66666665543221               1135689999999877666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.84  E-value=0.2  Score=44.06  Aligned_cols=118  Identities=11%  Similarity=0.156  Sum_probs=72.5

Q ss_pred             ccccceEEEEECCCC----CEEEEEeCCCeEEEEeCC-----CcceEEEeeec---cCCE--EEEEEccCCCeEEEEcCC
Q 021459           20 AHSRAVSCVKFSNDG----TLLASASLDKTVIIWSAS-----SLALVHRFVGH---SEGI--SDLAWSSDSHYICSASDD   85 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~----~~l~t~~~d~~i~vw~~~-----~~~~~~~~~~~---~~~v--~~~~~~~~~~~l~~~~~d   85 (312)
                      |.-..|..+.|+|-+    ..|++..-.+.|.||-+.     ..+.+....++   .-+|  ..+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            445569999999853    345555666899999765     22333222221   1122  357799999888776555


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEcC
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVK  137 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~  137 (312)
                      ..-.++++......++.--...+.|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            444556665433334332245578999999999998765533 2345788854

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.80  E-value=0.75  Score=36.70  Aligned_cols=183  Identities=13%  Similarity=0.118  Sum_probs=108.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCC--eEEEEeCCCcceEEEeeeccCC-EEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           23 RAVSCVKFSNDGTLLASASLDK--TVIIWSASSLALVHRFVGHSEG-ISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      .-...+.|..++.++-+.|.-|  .|+.++..+++.+....-...- -..+....+.=+.+ .=.++...+||..+ .+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qL-TWk~~~~f~yd~~t-l~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQL-TWKEGTGFVYDPNT-LKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEE-ESSSSEEEEEETTT-TEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEE-EecCCeEEEEcccc-ceE
Confidence            3455788888888888887766  7888999998876554322111 12333333322223 34678899999886 355


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--Cc---CeEEEEEccCCCEEEEeeCCCeEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SM---PVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      +.++.- .+.-+.++  .|++.|+.+.....+.++|..+-+..+.++..  ..   .++-+.+- +|...|-.=....|.
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            555532 23444555  45667777777778999998877666555432  22   34567775 677777666677888


Q ss_pred             EEeCCCCceeeEcc-----c------C---CCCcEEEEEECCCCCEEEEEe
Q 021459          175 IWDAGEGACLKTLI-----D------D---KDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       175 iwd~~~~~~~~~~~-----~------~---~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      ..|..+|+....+-     .      .   ......-++++|..+.+.+.+
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88999888765331     0      0   134577788988766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.68  E-value=0.92  Score=36.82  Aligned_cols=234  Identities=14%  Similarity=0.181  Sum_probs=127.0

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCC------CCceeeeeeec-----ccccEEEEEEecCC------------CEEE
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDAR------TPFDCLKTLRG-----HSDFVFCVNFNPQS------------NLIV  123 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~------------~~l~  123 (312)
                      -+.|+++|.+.+-++....+...+||..      .+...+..+..     ......-+.|+...            ..++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3578999999888888788899999986      12222223221     11223344444321            2467


Q ss_pred             EeecCCcEEEEEcCCCeE-----EEEee-ecCcCe-EEEEEccC--CCEEE-EeeCCCeEEEEeCCCCceee--EcccC-
Q 021459          124 SGSFDESIRIWEVKTGKC-----TRVIR-AHSMPV-TSVHFNRD--GSLIV-SGSHDGTCKIWDAGEGACLK--TLIDD-  190 (312)
Q Consensus       124 s~~~dg~i~~wd~~~~~~-----~~~~~-~~~~~v-~~~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~--~~~~~-  190 (312)
                      .+++||+|.-|...-+..     ...+. .....| +.+++...  +.+|. +--..++|.+||-.=.....  .+... 
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            889999999998533322     11121 112233 45555432  34444 44467889999753221110  01000 


Q ss_pred             ---CCC-----------cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc--CCceeEEEEE---EEccCCcE
Q 021459          191 ---KDP-----------AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH--TNKKYCITST---FSVTNGKY  251 (312)
Q Consensus       191 ---~~~-----------~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~  251 (312)
                         ...           -++.+.-.+++..=+.|..-|.|.+||. .+..++.+...  -...+-+...   +-...+.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence               000           1222233333333334445578999997 46666655322  2223333321   11234678


Q ss_pred             EEEeecCCeEEEEECCchheeecccCCc------cceEEEEEcCC------CceEEEeeecC
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLDGHT------DSVISVTCHPT------ENKIASAGLDG  301 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~p~------~~~l~~~~~dg  301 (312)
                      |+---.||+|..||..+++.+..+....      ...+.|+|...      ...+.+++-++
T Consensus       264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~d  325 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDD  325 (336)
T ss_pred             EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence            8877789999999998887776665432      35788888642      33455565543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.41  E-value=0.1  Score=28.54  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=26.3

Q ss_pred             CeEEEEEccCC---CEEEEeeCCCeEEEEeCCCCc
Q 021459          151 PVTSVHFNRDG---SLIVSGSHDGTCKIWDAGEGA  182 (312)
Q Consensus       151 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  182 (312)
                      ++.++.|+|+.   .+|+-.-..+.+.++|++++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            58899999844   488888888999999998643

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.36  E-value=0.12  Score=43.82  Aligned_cols=117  Identities=17%  Similarity=0.292  Sum_probs=77.9

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      -+++|.+++||+|.+.||.-..+.+|.+.+....+    ...+-+..+..|..++|+.+ .-+|.....| +.+|.....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            45699999999999999999999999999874322    12222334556889999876 4455554444 567766554


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEe-e-cCCcEEEEEcCCC
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSG-S-FDESIRIWEVKTG  139 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-~dg~i~~wd~~~~  139 (312)
                      ...++..+.|.-.|.--.|-++.+.++-+ + ...++.=+.++++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            55566677777788888888887754332 3 3333333444443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.32  E-value=1.2  Score=35.90  Aligned_cols=165  Identities=12%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA  182 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (312)
                      .+-...+.++.|+|+.+.|++......-.++=...|+.++.+.-.. ...-.+.+.-+++++++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445569999999999999888877776666667788777664221 223467777788888888888888887665432


Q ss_pred             eeeEc---------ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EE--EEEEccCCc--ee--EE-EEEEE
Q 021459          183 CLKTL---------IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FL--KIYTGHTNK--KY--CI-TSTFS  245 (312)
Q Consensus       183 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~--~~~~~~~~~--~~--~~-~~~~~  245 (312)
                      .....         ..........++|+|....|..+-.-+-+.||...... .+  .....+...  ..  .+ ...+.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            21111         11113446678899999999888877777777665332 11  111111110  00  11 12234


Q ss_pred             ccCCcEEEEeecCCeEEEEECCc
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ..++.+|+.+.+++.+.-.|...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence            45677888888888888888754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.25  E-value=0.058  Score=49.56  Aligned_cols=163  Identities=14%  Similarity=0.286  Sum_probs=92.7

Q ss_pred             ecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCC--CcceEEEee-----eccCCEEEEEEcc---CCCeEEEEcCCC
Q 021459           18 LTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSAS--SLALVHRFV-----GHSEGISDLAWSS---DSHYICSASDDR   86 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~-----~~~~~v~~~~~~~---~~~~l~~~~~d~   86 (312)
                      +.+..+.|-.+.|.. +-..++  ..-|.+.||++.  .|+....+.     .....+.-+.|.|   +..++..+..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            345566677777743 222222  223677888765  343332222     2233445566665   566788888888


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEE-----------EEEecCCCEEEEeecCCcEEEEEcC-----CCeEEEEeeecC-
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFC-----------VNFNPQSNLIVSGSFDESIRIWEVK-----TGKCTRVIRAHS-  149 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~s~~~dg~i~~wd~~-----~~~~~~~~~~~~-  149 (312)
                      .+++........  ..+.+|...+..           -..+|||+.++++..||.+++|.+.     .-.|....+.|. 
T Consensus       206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            998887655322  333445443322           2378999999999999999988753     223444556665 


Q ss_pred             cCeEEEEEccCCC---------EEEEee-CCCeEEEEeCCCCcee
Q 021459          150 MPVTSVHFNRDGS---------LIVSGS-HDGTCKIWDAGEGACL  184 (312)
Q Consensus       150 ~~v~~~~~~~~~~---------~l~~~~-~d~~i~iwd~~~~~~~  184 (312)
                      .+-.|.-++.+..         ++++++ .+..+++|.....+++
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3333333443322         334433 3456788876665554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.21  E-value=1.1  Score=34.85  Aligned_cols=145  Identities=13%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             cCeEEEEEccCCCEEEEeeCC---------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEE-EEecCCeEEEE
Q 021459          150 MPVTSVHFNRDGSLIVSGSHD---------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFIL-VGTLDSTLKLW  219 (312)
Q Consensus       150 ~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~  219 (312)
                      ...+.-..+|+|++++-...|         |.++.|-... + +..+.. .-..-..++|+.+.+.+. +-+.+-+|.-|
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeeh-hccCCccccccccCcEEEEEccCceEEeee
Confidence            345666788999985433222         2333332211 1 111110 011122356776666544 44667778778


Q ss_pred             E--cCCCcE-----EEEEEc-----cC-CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEE
Q 021459          220 N--YSAGKF-----LKIYTG-----HT-NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT  286 (312)
Q Consensus       220 d--~~~~~~-----~~~~~~-----~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~  286 (312)
                      |  ..+|..     +..+..     +. ....++     ...|.+.++.-..|+|...|..+++.+.++.-....|++++
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            7  444432     111111     00 011122     23577888888889999999999999988887788999999


Q ss_pred             EcCC--CceEEEeeecCC
Q 021459          287 CHPT--ENKIASAGLDGD  302 (312)
Q Consensus       287 ~~p~--~~~l~~~~~dgd  302 (312)
                      |--.  .-..+|+..+.+
T Consensus       261 FgGkn~d~~yvT~aa~~~  278 (310)
T KOG4499|consen  261 FGGKNLDILYVTTAAKFD  278 (310)
T ss_pred             ecCCCccEEEEEehhccc
Confidence            9543  234455544443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=0.7  Score=44.03  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=65.7

Q ss_pred             EEEEEEecCCCEEE--EeecCCcEEEEEcCCCeEE-----EEeeec------CcCeEEEEEccCCC-EEEEeeCCCeEEE
Q 021459          110 VFCVNFNPQSNLIV--SGSFDESIRIWEVKTGKCT-----RVIRAH------SMPVTSVHFNRDGS-LIVSGSHDGTCKI  175 (312)
Q Consensus       110 v~~~~~~~~~~~l~--s~~~dg~i~~wd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~-~l~~~~~d~~i~i  175 (312)
                      +..+...+|+...+  ..+.+-.|..||+++-...     .-+..|      ..-..++.|.|.-. ..+++..|+.|++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            34444556655433  3333446889998753211     111111      12245677877432 3566778888887


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      .-+........- ........+++|+|.|+++++|-..|++..|...
T Consensus       183 ~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  183 KSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            755432111111 1223456788999999999999999999988653

>PRK10115 protease 2; Provisional

Probab=94.98  E-value=3.1  Score=38.80  Aligned_cols=110  Identities=14%  Similarity=0.020  Sum_probs=64.5

Q ss_pred             CEEEEEEccCCCeEEEEcCC-----CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC------CcEEEE
Q 021459           66 GISDLAWSSDSHYICSASDD-----RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIW  134 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~w  134 (312)
                      .+..+.|+|++++|+.+.+.     -.+++.|+.++......+.+-   -..++|.+|++.|+....+      ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            46678899999988865332     257788887653222222221   1458999998866555432      357778


Q ss_pred             EcCCC--eEEEEeeecCcCeE-EEEEccCCCEEEEeeC---CCeEEEEeC
Q 021459          135 EVKTG--KCTRVIRAHSMPVT-SVHFNRDGSLIVSGSH---DGTCKIWDA  178 (312)
Q Consensus       135 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iwd~  178 (312)
                      ++.++  +....+........ ....+.++++++..+.   ++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88877  33334443333333 3333447776664433   346788874

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.86  E-value=3.6  Score=38.92  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             ccceEEEEECCCC------CEEEEEeCCCeEEEEeC-CCcceEEEe-ee---ccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           22 SRAVSCVKFSNDG------TLLASASLDKTVIIWSA-SSLALVHRF-VG---HSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        22 ~~~v~~~~~s~~~------~~l~t~~~d~~i~vw~~-~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      +..|.|+.++|-|      ++++.|..+..+++-.. .+...+... .+   -+..|.-..+-.|..+|.++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            5689999999742      26888877766654432 233222211 11   1233444455567889999999999887


Q ss_pred             EeCC
Q 021459           91 WDAR   94 (312)
Q Consensus        91 wd~~   94 (312)
                      +.+.
T Consensus       610 fv~d  613 (1096)
T KOG1897|consen  610 FVLD  613 (1096)
T ss_pred             EEEE
Confidence            7543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.79  E-value=0.18  Score=27.61  Aligned_cols=32  Identities=19%  Similarity=0.486  Sum_probs=25.7

Q ss_pred             ccEEEEEEecCC---CEEEEeecCCcEEEEEcCCC
Q 021459          108 DFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTG  139 (312)
Q Consensus       108 ~~v~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~  139 (312)
                      +.+.++.|+|++   .+|+.+-..|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            357899999854   47888777899999999963

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.78  E-value=2.1  Score=39.92  Aligned_cols=72  Identities=10%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCC----------Cce--eeeee--------ecccccEEEEEEecC---CCE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDART----------PFD--CLKTL--------RGHSDFVFCVNFNPQ---SNL  121 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~----------~~~--~~~~~--------~~~~~~v~~~~~~~~---~~~  121 (312)
                      ..|..+..+|+|++|+..+..+.. |..+..          +..  ..++.        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            358889999999999988776643 333311          000  00111        122345667777775   356


Q ss_pred             EEEeecCCcEEEEEcC
Q 021459          122 IVSGSFDESIRIWEVK  137 (312)
Q Consensus       122 l~s~~~dg~i~~wd~~  137 (312)
                      |+.-..|+++++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            6666677777777764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN02193 nitrile-specifier protein

Probab=94.65  E-value=3  Score=37.00  Aligned_cols=147  Identities=14%  Similarity=0.188  Sum_probs=74.1

Q ss_pred             CCCEEEEeecC-----CcEEEEEcCCCeEEEEeeec--CcC--eEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCce
Q 021459          118 QSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRAH--SMP--VTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGAC  183 (312)
Q Consensus       118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~--~~~--v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~  183 (312)
                      ++.+++.|+.+     ..+..||+.+.+-.......  ..+  -.+++. -++++++.|+.++     .+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566777655     35788898876543221110  111  112222 2566677776543     466788776654


Q ss_pred             eeEccc----CCCCcEEEEEECCCCCEEEEEecC----CeEEEEEcCCCcEEEEEEcc--CCceeEEEEEEEccCCcEEE
Q 021459          184 LKTLID----DKDPAVSFAKFSPNGKFILVGTLD----STLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       184 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~  253 (312)
                      ......    ........+.  .+++.++.++.+    ..+.+||..+.+....-...  +.......+.  .-++++++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEE
Confidence            321110    0001111222  256677777655    46889999887764432210  1111111111  23567778


Q ss_pred             EeecC--------------CeEEEEECCch
Q 021459          254 SGSED--------------NCVYVWDLQQK  269 (312)
Q Consensus       254 ~~~~d--------------g~i~iwd~~~~  269 (312)
                      .|+.+              ..+.++|+.+.
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcC
Confidence            88753              24778888654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.63  E-value=0.62  Score=36.40  Aligned_cols=72  Identities=14%  Similarity=0.372  Sum_probs=51.9

Q ss_pred             EccCCCEEEEeeCCCeEEEEeCCCCceeeEc------cc-------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------ID-------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      +..++.++++.+.+|.+++||+.+.+.....      ..       .....+..+.++.+|.-+++-+ +|..+.||..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999987654322      22       2345567777888887766554 67889998776


Q ss_pred             CcEEEE
Q 021459          224 GKFLKI  229 (312)
Q Consensus       224 ~~~~~~  229 (312)
                      +..+++
T Consensus        97 ~~W~~v  102 (219)
T PF07569_consen   97 GCWIRV  102 (219)
T ss_pred             ceeEEe
Confidence            665554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.62  E-value=1.1  Score=39.02  Aligned_cols=143  Identities=12%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             CCCEEEE-EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-------eEEEEcCCCeEEEEeCCCCceeeeeee
Q 021459           33 DGTLLAS-ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-------YICSASDDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        33 ~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      +..+|.. |+.-..+.--|++-|+.+..+..|..-  -+.|.|+.+       .-+.|-.+..|.--|.+.....+....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            4444443 444456666688888888888877665  366766432       223455566665556543221111111


Q ss_pred             cccccE----EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459          105 GHSDFV----FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       105 ~~~~~v----~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (312)
                       ..+.+    ++......+.+++.++..|-|++||.-..+....+.+-..+|..+..+.+|+++++.+.. .+.+-|++
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence             11111    111122345689999999999999964333334455566788889999999987766554 66666654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.55  E-value=2.2  Score=37.42  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=17.5

Q ss_pred             EEEEEEecCCCEEEEeecCCcEEE
Q 021459          110 VFCVNFNPQSNLIVSGSFDESIRI  133 (312)
Q Consensus       110 v~~~~~~~~~~~l~s~~~dg~i~~  133 (312)
                      |..+..++.|..++-++.+|.+..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vM  129 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVM  129 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEE
Confidence            556677888888888888885543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=1.8  Score=39.47  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      .|++|++. |+.+..+......+-.+.|+.+. .|++...+|++.+|++-.
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            47777754 55555554444477889998665 577788999999998753

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.47  E-value=2  Score=39.10  Aligned_cols=111  Identities=15%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEc--cCCCeEEEEcCCCeEEEEeCC-----C
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWS--SDSHYICSASDDRTLRIWDAR-----T   95 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~wd~~-----~   95 (312)
                      ..+-+.-|.-++..+.-+....+.|||...+.+...-. ...+.|.++.|.  |+++.+++.+....|.+|.-.     +
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            44445555544444444445678999998876543322 346789999996  578888888889999988431     1


Q ss_pred             --C-ceeeee--eeccc-ccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459           96 --P-FDCLKT--LRGHS-DFVFCVNFNPQSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        96 --~-~~~~~~--~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~~wd~  136 (312)
                        + ...++.  +..++ .+|.+..|.++|..++.++  ..+.++|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              0 111222  22233 5688899999987766554  45777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.35  E-value=2.9  Score=35.65  Aligned_cols=141  Identities=9%  Similarity=0.080  Sum_probs=70.2

Q ss_pred             CEEEEEEccCCCeEEEEc-----------CCC-eEEEEeCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCc
Q 021459           66 GISDLAWSSDSHYICSAS-----------DDR-TLRIWDARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES  130 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~-----------~d~-~v~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  130 (312)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+..   .....+.........+++.+++ ++++ ... .
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence            345788999988776642           122 56666532211   1112222222334678888887 4444 433 3


Q ss_pred             EEEE-EcCCC-----eEEEE---eee----cCcCeEEEEEccCCCEEEEeeCC-------------------CeEEEEeC
Q 021459          131 IRIW-EVKTG-----KCTRV---IRA----HSMPVTSVHFNRDGSLIVSGSHD-------------------GTCKIWDA  178 (312)
Q Consensus       131 i~~w-d~~~~-----~~~~~---~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~iwd~  178 (312)
                      |..+ |....     +....   +..    +......+.|.|||.+.++-+..                   +.+.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4434 44321     21111   211    12336789999999876654421                   33444444


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      ..+.. ..+ ...-.....++|+++|+++++-.
T Consensus       172 dg~~~-e~~-a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVV-AHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEE-ecCcCCCccceECCCCCEEEEcc
Confidence            43322 111 11112223467899988876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.24  E-value=2.3  Score=34.05  Aligned_cols=240  Identities=13%  Similarity=0.083  Sum_probs=134.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee-
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT-  102 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~-  102 (312)
                      .-..++-+|||..-+++...+.|--.|..+++....-.+....-..+...|||..-++-+.. .|.-.|.++..-.... 
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            44567778888877788777777777888887655444444555667788888765543222 3444454432111111 


Q ss_pred             -eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          103 -LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       103 -~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                       .+..........|.+.|++-+++... .---.|..++ .++++... ...-+.++..|+|+..++.-.++.|...|...
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~  219 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA  219 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccc-cceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence             12234567788899999888877532 1111121111 12233221 23456788899999988888888888888776


Q ss_pred             CceeeEcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          181 GACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       181 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      +........+. ......+.-+|.|..-++....+.+..||........- +.+.....+.+.   ....++.-.+-...
T Consensus       220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~r---VD~~grVW~sea~a  296 (353)
T COG4257         220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMR---VDRHGRVWLSEADA  296 (353)
T ss_pred             CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceee---eccCCcEEeecccc
Confidence            63222111111 12233344567777777766677888888765543321 222222222222   22334444544556


Q ss_pred             CeEEEEECCch
Q 021459          259 NCVYVWDLQQK  269 (312)
Q Consensus       259 g~i~iwd~~~~  269 (312)
                      |.|.-+|.++.
T Consensus       297 gai~rfdpeta  307 (353)
T COG4257         297 GAIGRFDPETA  307 (353)
T ss_pred             CceeecCcccc
Confidence            66777776553

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.03  E-value=3.1  Score=34.74  Aligned_cols=140  Identities=11%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CCCEEEEeecC-----CcEEEEEcCCCeEE---EEeeecCcCe--EEEEEccCCCEEEEeeC-----CCeEEEEeCCCCc
Q 021459          118 QSNLIVSGSFD-----ESIRIWEVKTGKCT---RVIRAHSMPV--TSVHFNRDGSLIVSGSH-----DGTCKIWDAGEGA  182 (312)
Q Consensus       118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~  182 (312)
                      ++.+++.|+.+     ..+..||+.+.+-.   ..+..-..+.  .+++. -++++.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     24667777665431   1111111111  12222 25666666664     2357888988765


Q ss_pred             eeeEcccCCCCcEEEEEECCCCCEEEEEecCC----eEEEEEcCCCcEEEEEEcc--CCcee-EEEEEEEccCCcEEEEe
Q 021459          183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS----TLKLWNYSAGKFLKIYTGH--TNKKY-CITSTFSVTNGKYIVSG  255 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~  255 (312)
                      ....................++++.+.|+.++    .+..||..+.+....-...  ..+.. .........++++++.|
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G  230 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG  230 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
Confidence            43321001111111122234567777777653    3567888776654321100  00110 01111222356788888


Q ss_pred             ecC
Q 021459          256 SED  258 (312)
Q Consensus       256 ~~d  258 (312)
                      +.+
T Consensus       231 G~~  233 (323)
T TIGR03548       231 GFN  233 (323)
T ss_pred             CcC
Confidence            865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.03  E-value=3.6  Score=35.45  Aligned_cols=192  Identities=13%  Similarity=0.167  Sum_probs=86.2

Q ss_pred             CCEEEEee-cCCcEEEEEcCC----CeEEEEeee---cC----cCeEEEEEccCCCEEEEeeC------CCeEEEEeCCC
Q 021459          119 SNLIVSGS-FDESIRIWEVKT----GKCTRVIRA---HS----MPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGE  180 (312)
Q Consensus       119 ~~~l~s~~-~dg~i~~wd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~  180 (312)
                      .++|+..+ ..+.|++.|+.+    .+..++++.   +.    .....+..-|+|+.++++-.      -|.+.+.|-.+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45666666 567899999874    334444432   11    11234455688988887432      24577777665


Q ss_pred             CceeeEcccCCC--CcEEEEEECCCCCEEEEEe--------------------cCCeEEEEEcCCCcEEEEEEccCCcee
Q 021459          181 GACLKTLIDDKD--PAVSFAKFSPNGKFILVGT--------------------LDSTLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       181 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      -+..........  .-.....+.|..+.+++..                    .-.++.+||+.+.+.++.+.-......
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            554444332211  1122345667666666642                    235799999999998888775544444


Q ss_pred             EEEEEEEcc-CC-cEEEEeecCCeEEEEEC-Cch----heeeccc-----------------CCccceEEEEEcCCCceE
Q 021459          239 CITSTFSVT-NG-KYIVSGSEDNCVYVWDL-QQK----TMIQKLD-----------------GHTDSVISVTCHPTENKI  294 (312)
Q Consensus       239 ~~~~~~~~~-~~-~~l~~~~~dg~i~iwd~-~~~----~~~~~~~-----------------~h~~~v~~l~~~p~~~~l  294 (312)
                      .+...+... +. .-++.+.-...|..|-- ..+    +.+..+.                 .-..-|+.+..|.|.++|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            444444432 12 22333333344444422 111    1111121                 112347888899999888


Q ss_pred             EEeeecCCeeEEEEeec
Q 021459          295 ASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       295 ~~~~~dgd~~v~iw~~~  311 (312)
                      ..+.. ..+.||.||+.
T Consensus       327 Yvs~W-~~GdvrqYDIS  342 (461)
T PF05694_consen  327 YVSNW-LHGDVRQYDIS  342 (461)
T ss_dssp             EEEET-TTTEEEEEE-S
T ss_pred             EEEcc-cCCcEEEEecC
Confidence            76665 45789999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.02  E-value=2.9  Score=34.42  Aligned_cols=271  Identities=9%  Similarity=0.092  Sum_probs=111.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec-----cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH-----SEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      -..++..+.|..+.+-.+.| ..+.|.. ....++-.......     .....++.|..+ ..+++| ..+.|. ...+.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~ll-~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLLL-HTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEEE-EESST
T ss_pred             CCCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceEE-EecCC
Confidence            45588999998555555555 4454422 22223221111111     123556777543 344444 455432 22222


Q ss_pred             Cc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           96 PF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        96 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      +.  +.+.....-.+....+....++..++. +..|.|+. ....|+.-+. .......+..+.-+++|++++++.....
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            21  111110111122223333333333333 44455432 2233333222 2233456788888999999888877767


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc----cCCcee-EEEEEEEcc
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG----HTNKKY-CITSTFSVT  247 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~~~-~~~~~~~~~  247 (312)
                      ..-||.......... ......+..+.|.|++.+.+++ ..|.|+.=+.  ......+..    .....+ .+...+ .+
T Consensus       168 ~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~--~~~~~~w~~~~~~~~~~~~~~ld~a~-~~  242 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD--PDDGETWSEPIIPIKTNGYGILDLAY-RP  242 (302)
T ss_dssp             EEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE---TTEEEEE---B-TTSS--S-EEEEEE-SS
T ss_pred             EEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccC--CCCccccccccCCcccCceeeEEEEe-cC
Confidence            778887653222211 1234568888899998766644 7788877652  122222222    111122 233333 34


Q ss_pred             CCcEEEEeecCCeEEEEECCc---hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQ---KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      +.+..++| ..|.+.. ....   .+.......-......+.|.+..+-++.+.   ++.|.=|
T Consensus       243 ~~~~wa~g-g~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~---~G~ll~~  301 (302)
T PF14870_consen  243 PNEIWAVG-GSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ---DGVLLRY  301 (302)
T ss_dssp             SS-EEEEE-STT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S---TTEEEEE
T ss_pred             CCCEEEEe-CCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECC---CcEEEEe
Confidence            45555554 4454433 2222   222223333455688898876666666553   3455444

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.67  E-value=2.7  Score=33.40  Aligned_cols=143  Identities=13%  Similarity=0.218  Sum_probs=73.6

Q ss_pred             EEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---CeEEEEeCCC----CceeeEcc-cCCCCcEEEEEECCC
Q 021459          132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---GTCKIWDAGE----GACLKTLI-DDKDPAVSFAKFSPN  203 (312)
Q Consensus       132 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~~  203 (312)
                      .+||+.+++..........-..+-.+.+||+++.+|+..   ..+++++...    ........ -...........-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            478888776433211122223344567899999988753   3477777543    11110000 011122223445679


Q ss_pred             CCEEEEEecCCe-EEEEEcCC--CcEEE--EEEc--cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          204 GKFILVGTLDST-LKLWNYSA--GKFLK--IYTG--HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       204 ~~~l~~~~~d~~-i~v~d~~~--~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      |+.|+.|+.... ..+|.-..  .....  .+..  .......--..+..++|++++.+..+.  .|||..+.+.+..+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence            999999887743 34444321  11111  1110  011111222345668999999888765  466877665555544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02153 epithiospecifier protein

Probab=93.56  E-value=4  Score=34.42  Aligned_cols=147  Identities=17%  Similarity=0.251  Sum_probs=71.2

Q ss_pred             CCCEEEEeecC-----CcEEEEEcCCCeEEEEeee--c--CcC--eEEEEEccCCCEEEEeeCC-----------CeEEE
Q 021459          118 QSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRA--H--SMP--VTSVHFNRDGSLIVSGSHD-----------GTCKI  175 (312)
Q Consensus       118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~--~--~~~--v~~~~~~~~~~~l~~~~~d-----------~~i~i  175 (312)
                      ++++++.|+.+     ..+.+||+.+.+-...-..  .  ..+  -.+++ .-++++++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence            35566777653     2577889887653321110  0  111  11222 2356666777653           24677


Q ss_pred             EeCCCCceeeEcccC----CCCcEEEEEECCCCCEEEEEecC-------------CeEEEEEcCCCcEEEEEEcc--CCc
Q 021459          176 WDAGEGACLKTLIDD----KDPAVSFAKFSPNGKFILVGTLD-------------STLKLWNYSAGKFLKIYTGH--TNK  236 (312)
Q Consensus       176 wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~--~~~  236 (312)
                      ||+.+.+........    .......+.  -+++.++.++.+             ..+.+||..+.+....-...  ...
T Consensus       164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~  241 (341)
T PLN02153        164 YNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA  241 (341)
T ss_pred             EECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence            888776543211100    011111222  255665655432             46888998887765432111  111


Q ss_pred             eeEEEEEEEccCCcEEEEeecC--------------CeEEEEECCch
Q 021459          237 KYCITSTFSVTNGKYIVSGSED--------------NCVYVWDLQQK  269 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~  269 (312)
                      .......  ..++++++.|+..              ..+..+|+.+.
T Consensus       242 r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        242 RSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             cceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            1111111  2346777777752              25778887654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=2.7  Score=40.97  Aligned_cols=139  Identities=14%  Similarity=0.313  Sum_probs=88.4

Q ss_pred             eCCCeEEEEeCCCcceEEEeeeccCCEEEEE--------EccCCCeEEEEcCCCeEEEEeCCC----Cceee----eeee
Q 021459           41 SLDKTVIIWSASSLALVHRFVGHSEGISDLA--------WSSDSHYICSASDDRTLRIWDART----PFDCL----KTLR  104 (312)
Q Consensus        41 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~v~~wd~~~----~~~~~----~~~~  104 (312)
                      ..|..+.+|+++++.....+.+-...|..+.        |-|.=++++..+..-.|.++-+..    .....    ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4678999999999877777777777776664        334445566555666677764421    11100    1111


Q ss_pred             cccccEEEEEEecCCCEEEEeecCCcEE--EEEcCCC---e-EE----------------EEee-ecCcCeEEEEEccCC
Q 021459          105 GHSDFVFCVNFNPQSNLIVSGSFDESIR--IWEVKTG---K-CT----------------RVIR-AHSMPVTSVHFNRDG  161 (312)
Q Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~--~wd~~~~---~-~~----------------~~~~-~~~~~v~~~~~~~~~  161 (312)
                      ...-.|.|+....+|+.+++| .||.|+  +|....+   + +.                ..+. .+..+|..+.....-
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            234568888877788777765 455443  2222221   1 10                1122 456789999998888


Q ss_pred             CEEEEeeCCCeEEEEeCCC
Q 021459          162 SLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       162 ~~l~~~~~d~~i~iwd~~~  180 (312)
                      ..+.+-+..+.|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8899999999999999876

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.45  E-value=0.083  Score=48.60  Aligned_cols=117  Identities=15%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             eEEEEECC---CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEE-----------EccCCCeEEEEcCCCeEEE
Q 021459           25 VSCVKFSN---DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLA-----------WSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        25 v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~v~~   90 (312)
                      +.-+.|.|   +..++..+-.++++++.+...... ..+.+|...+..++           .+|||+.++.++.||.++.
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            34455554   566777788889999876654332 33445766655543           5899999999999999999


Q ss_pred             EeCCC----Cceeeeeeeccc-ccEEEEEEecCC---------CEEEEee-cCCcEEEEEcCCCeEE
Q 021459           91 WDART----PFDCLKTLRGHS-DFVFCVNFNPQS---------NLIVSGS-FDESIRIWEVKTGKCT  142 (312)
Q Consensus        91 wd~~~----~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~s~~-~dg~i~~wd~~~~~~~  142 (312)
                      |.+.-    ...++...+.|+ .+-.|.-++.+.         .++++++ .+..+++|....-+|+
T Consensus       262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            97632    123444555565 333333343321         2344443 3456888876655544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.30  E-value=4.5  Score=34.18  Aligned_cols=53  Identities=13%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeecCcCeEEE-EE-ccCCCEEEEeeCC
Q 021459          118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAHSMPVTSV-HF-NRDGSLIVSGSHD  170 (312)
Q Consensus       118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~~~v~~~-~~-~~~~~~l~~~~~d  170 (312)
                      ++++.+.|+.+           ..+..||..+++-...-.......... +. .-++++.+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            45666666653           246778887665332211111111111 11 2367777777754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.17  E-value=3.8  Score=35.91  Aligned_cols=129  Identities=19%  Similarity=0.230  Sum_probs=73.0

Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-------EEEEEecCCeEEEEEcC-CCcEEEEEEccC-Cc
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-------FILVGTLDSTLKLWNYS-AGKFLKIYTGHT-NK  236 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~-~~  236 (312)
                      .|+....+.-.|+..|+.+.......+-   .+.+.|..+       .-++|-.+..|.-.|.+ .+..+...+... ..
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             cCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            4555556666677777766554333222   234444321       22345455556555654 233333322111 01


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .+...+... ....++|.|+..|-|++||--...--..+++....|..+....+|.++++..
T Consensus       562 Kn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         562 KNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             ccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence            111111112 3356899999999999999654443445677788999999999998877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.95  E-value=1.1  Score=35.11  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             EccCCCeEEEEcCCCeEEEEeCCCCceeeee------ee-------cccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459           72 WSSDSHYICSASDDRTLRIWDARTPFDCLKT------LR-------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus        72 ~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                      +..++++|++...+|.+++||+.+.......      +.       .....|..+.+..+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4457888999999999999999874322111      11       1234455555555555544433 3455666544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.86  E-value=2.2  Score=39.26  Aligned_cols=113  Identities=12%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             cceEEEEECC--CCCEEEEEeCCCeEEEEeCCCc-----------c---------eEEEeeeccCCEEEEEEc--cCCCe
Q 021459           23 RAVSCVKFSN--DGTLLASASLDKTVIIWSASSL-----------A---------LVHRFVGHSEGISDLAWS--SDSHY   78 (312)
Q Consensus        23 ~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~-----------~---------~~~~~~~~~~~v~~~~~~--~~~~~   78 (312)
                      ..|+.+....  +...|+.+..||.|.+|..+..           .         +... ..-...+++++++  ...++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceE
Confidence            4566666654  4457888999999999965321           0         0111 1123578889998  77788


Q ss_pred             EEEEcCCCeEEEEeCCC--CceeeeeeecccccEEEEEEecCC---C---EEEEeecCCcEEEEEc
Q 021459           79 ICSASDDRTLRIWDART--PFDCLKTLRGHSDFVFCVNFNPQS---N---LIVSGSFDESIRIWEV  136 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~s~~~dg~i~~wd~  136 (312)
                      ||+++....|.||-...  ..........+...|.+++|-++.   .   .+++++..|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888875332  111111111255678999997643   2   7888999999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.50  E-value=2.7  Score=29.66  Aligned_cols=87  Identities=9%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             EEECCCCCEEEEEecCCeEEEEEcCCCc--------EEEEEEccCCceeEEEEEEEc--cCCcEEEEeecCCeEEEEECC
Q 021459          198 AKFSPNGKFILVGTLDSTLKLWNYSAGK--------FLKIYTGHTNKKYCITSTFSV--TNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      -.|+.....|++++.-|.|.|++.....        .+..+.-. ....++......  .+.+.|+.|+.. .+..||..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence            3456666678888888888888765322        23333322 223334333322  234567777655 58899997


Q ss_pred             chheeecccCCccceEEEEE
Q 021459          268 QKTMIQKLDGHTDSVISVTC  287 (312)
Q Consensus       268 ~~~~~~~~~~h~~~v~~l~~  287 (312)
                      +...+.. +.-.+.|+++.+
T Consensus        82 ~N~d~Fy-ke~~DGvn~i~~  100 (136)
T PF14781_consen   82 NNSDLFY-KEVPDGVNAIVI  100 (136)
T ss_pred             cCchhhh-hhCccceeEEEE
Confidence            6544322 223466777776

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.71  E-value=5.7  Score=31.59  Aligned_cols=138  Identities=16%  Similarity=0.259  Sum_probs=71.9

Q ss_pred             EEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCC-Ccee--e---eeeecccccEEEEEEec
Q 021459           47 IIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDART-PFDC--L---KTLRGHSDFVFCVNFNP  117 (312)
Q Consensus        47 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~-~~~~--~---~~~~~~~~~v~~~~~~~  117 (312)
                      .+||..+.+....-....--..+=.+.+||++|.+|+..   ..+++++... ...+  .   ..+ .......+..--|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceECC
Confidence            467877765432111111111223467899999988652   3578887543 0000  0   011 1123334455567


Q ss_pred             CCCEEEEeecCC-cEEEEEcCCC--eEEE--Eeee----c-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459          118 QSNLIVSGSFDE-SIRIWEVKTG--KCTR--VIRA----H-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       118 ~~~~l~s~~~dg-~i~~wd~~~~--~~~~--~~~~----~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (312)
                      ||+.++.|+... +..+|.-+..  ....  .+..    . ..----+...|+|++|+.+..+.  .+||..+++.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            999988888764 3445543211  1111  1110    0 01112456779999998887754  56787777655554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.26  E-value=9.2  Score=33.16  Aligned_cols=153  Identities=10%  Similarity=0.126  Sum_probs=86.7

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCcc---eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce---e
Q 021459           26 SCVKFSNDGTLLASASLDKTVIIWSASSLA---LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD---C   99 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~---~   99 (312)
                      +.+-|...++.|+.... |-+.-|......   ++..-....++|.++.|++|.+.||.--.++.|.+.+......   .
T Consensus        26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            34555544444444333 344445443221   1221223456899999999999999999999999998632211   1


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeC--CCeEEEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSH--DGTCKIW  176 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iw  176 (312)
                      ....+.....|....|... ..++.....| +.+|..... +.++..+.|+..|.-..|.++.+.++.++.  .+.+.=+
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf  182 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF  182 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence            1112223345777778765 4444444444 677765433 234455667778888888888776554433  3333334


Q ss_pred             eCCCC
Q 021459          177 DAGEG  181 (312)
Q Consensus       177 d~~~~  181 (312)
                      .++++
T Consensus       183 ~~~~~  187 (657)
T KOG2377|consen  183 HFRAG  187 (657)
T ss_pred             EEeec
Confidence            44433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.15  E-value=7.4  Score=31.87  Aligned_cols=210  Identities=12%  Similarity=0.125  Sum_probs=110.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCC------Cc-ceEEEeee-----ccCCEEEEEEccCCC------------eEEEE
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSAS------SL-ALVHRFVG-----HSEGISDLAWSSDSH------------YICSA   82 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~~   82 (312)
                      .++++|.+.+-++....+...+|+..      .. .++-.+..     .....+.+.|+....            .++.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            68999999888887777899999876      11 22222221     123466677764322            25677


Q ss_pred             cCCCeEEEEeCCCCce----eeeeee-ccccc-EEEEEEe--cCCCEEEEee-cCCcEEEEEcCCCeEEE--Eeeec---
Q 021459           83 SDDRTLRIWDARTPFD----CLKTLR-GHSDF-VFCVNFN--PQSNLIVSGS-FDESIRIWEVKTGKCTR--VIRAH---  148 (312)
Q Consensus        83 ~~d~~v~~wd~~~~~~----~~~~~~-~~~~~-v~~~~~~--~~~~~l~s~~-~dg~i~~wd~~~~~~~~--~~~~~---  148 (312)
                      ++||+|.-|...-...    ....+. ...+. ..-+++.  ..+++|+.+. .+++|.+||-.=.+...  .+...   
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP  186 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP  186 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence            8999999998532211    111111 11122 2334443  3355665554 46889999854222110  01000   


Q ss_pred             --CcC--e---------EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-CcEEEEE-----EC-CCCCEEE
Q 021459          149 --SMP--V---------TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-PAVSFAK-----FS-PNGKFIL  208 (312)
Q Consensus       149 --~~~--v---------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-----~~-~~~~~l~  208 (312)
                        -.+  |         +-..-.+++..=+.|..-|.|-+||+. +..++++..... ..-.-++     |. ..+.+|+
T Consensus       187 agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLV  265 (336)
T TIGR03118       187 AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLV  265 (336)
T ss_pred             CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEE
Confidence              001  1         111112222222334445789999875 555555532110 0011122     22 2455555


Q ss_pred             EEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459          209 VGTLDSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                      ---.||+|..||..+++.+-.+.......
T Consensus       266 GNFGDG~InaFD~~sG~~~g~L~~~~G~p  294 (336)
T TIGR03118       266 GNFGDGTINAYDPQSGAQLGQLLDPDNHP  294 (336)
T ss_pred             eecCCceeEEecCCCCceeeeecCCCCCe
Confidence            44569999999999998887776554443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.11  E-value=14  Score=34.99  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-------------EEEEcc--CCCeEEEEcC----------CCeE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-------------DLAWSS--DSHYICSASD----------DRTL   88 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~v   88 (312)
                      +..|+.++.|+.+.-.|..+++.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788888899999999999988765431 11110             011112  1345556642          6889


Q ss_pred             EEEeCCCCceeeeeeecc--------c--------ccE-EEEEEecCCCEEEEee------------------cCCcEEE
Q 021459           89 RIWDARTPFDCLKTLRGH--------S--------DFV-FCVNFNPQSNLIVSGS------------------FDESIRI  133 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~--------~--------~~v-~~~~~~~~~~~l~s~~------------------~dg~i~~  133 (312)
                      +-+|.+++...-+...+.        .        ..+ ...+++++...++.+.                  ..++|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            999998865432211110        0        011 2344555544443321                  1345666


Q ss_pred             EEcCCCeEEEEeeecCcCe---------EEEEEcc-CCC---EEEEeeCCCeEEEEeCCCCceee
Q 021459          134 WEVKTGKCTRVIRAHSMPV---------TSVHFNR-DGS---LIVSGSHDGTCKIWDAGEGACLK  185 (312)
Q Consensus       134 wd~~~~~~~~~~~~~~~~v---------~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~  185 (312)
                      .|.++|+..-.++.....+         .-+.+.. +|+   .++.++.+|.+.++|-++++.+.
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            7888888776665422111         1122222 553   78899999999999998887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.07  E-value=9  Score=32.72  Aligned_cols=196  Identities=16%  Similarity=0.108  Sum_probs=93.1

Q ss_pred             eEEEEcCCCeEEEEeCCCCceeeee-eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEE
Q 021459           78 YICSASDDRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSV  155 (312)
Q Consensus        78 ~l~~~~~d~~v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~  155 (312)
                      .++.+..+|.+.-.|.++....-.. .......+..-....+|+ ++.++.+|.++.+|.++|+..-...... ..+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            4445567887777777765422110 010011222222233554 7778888888889988888766655444 111111


Q ss_pred             EEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC--CCcEEEEEECCCCCEEEEEec--CCeEEEEEcCCCcEEEEEE
Q 021459          156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK--DPAVSFAKFSPNGKFILVGTL--DSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~  231 (312)
                      ..-.++ .+..++.++.+...|..+++..-......  ...+..... .....+..+..  ++.+.-+|..+|.......
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            112233 33444467888877777766543321111  111111101 12234444444  5566677777776654421


Q ss_pred             ccCCce-eEEEEEEEccC-----CcEEEEeecCCeEEEEECCchheeeccc
Q 021459          232 GHTNKK-YCITSTFSVTN-----GKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       232 ~~~~~~-~~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      ...... ..+........     +.-+..++.+|.+...|..+++.+-+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            111000 00000000011     1223556667777777777776655443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.02  E-value=2  Score=32.23  Aligned_cols=29  Identities=17%  Similarity=0.360  Sum_probs=23.5

Q ss_pred             CeEEEEEccCC------CEEEEeeCCCeEEEEeCC
Q 021459          151 PVTSVHFNRDG------SLIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       151 ~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~  179 (312)
                      .+..++|||.|      -+|++.+.++.+.+|...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999954      267888899999999755

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.03  E-value=19  Score=35.34  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA   55 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~   55 (312)
                      .-..++|+|...++|.+..+|.|.++-....+
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccceE
Confidence            45678999999999999999999999765443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.63  E-value=12  Score=32.02  Aligned_cols=53  Identities=15%  Similarity=0.328  Sum_probs=25.8

Q ss_pred             CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeecCcCeE-EEEEc-cCCCEEEEeeCC
Q 021459          118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAHSMPVT-SVHFN-RDGSLIVSGSHD  170 (312)
Q Consensus       118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~d  170 (312)
                      ++.+++.|+..           ..+..||..+.+-...-.....+.. ..+.. -++++.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            45566666643           2477788876653322110011111 11122 367777777754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.32  E-value=3.1  Score=37.73  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCCeEEEEeCCC----Cceeee----------eee-----------cccccEEEEEEec----CCCEEEEe
Q 021459           75 DSHYICSASDDRTLRIWDART----PFDCLK----------TLR-----------GHSDFVFCVNFNP----QSNLIVSG  125 (312)
Q Consensus        75 ~~~~l~~~~~d~~v~~wd~~~----~~~~~~----------~~~-----------~~~~~v~~~~~~~----~~~~l~s~  125 (312)
                      +...++.+..||.+.......    +.....          .+.           .........+.+.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666777778888887776542    110000          000           0112344455555    66899999


Q ss_pred             ecCCcEEEEEcCCCeEEEEe
Q 021459          126 SFDESIRIWEVKTGKCTRVI  145 (312)
Q Consensus       126 ~~dg~i~~wd~~~~~~~~~~  145 (312)
                      +.|+.+|+||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.27  E-value=14  Score=32.02  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-e---ee
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-D---CL  100 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~---~~  100 (312)
                      ...+..++++.+++.+..-..++-|+-....-...-......++.+.+.+++..++++ ..|.+.. ....+. .   ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            4455667888877776554333444432110011112234568899999999888766 5565433 222221 0   11


Q ss_pred             eeeec--ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---ecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459          101 KTLRG--HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---AHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus       101 ~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      .....  ....+..+.|.++++.+++ +.+|.+..- ...++.-...+   .-....+.+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            11111  1134778888877666555 566766554 34444322222   123457888887776655554 5666544


Q ss_pred             E
Q 021459          176 W  176 (312)
Q Consensus       176 w  176 (312)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            3

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.18  E-value=3.2  Score=35.77  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee-ecccc----cEE-EEEEecCCCEEEEeecCCcEEEE-EcC
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL-RGHSD----FVF-CVNFNPQSNLIVSGSFDESIRIW-EVK  137 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~i~~w-d~~  137 (312)
                      ..|..+-..|||+.|..-+. ..+.++++.+..-..+.+ ....+    .|. ++..-..+.-++.++.||-|.-| |.+
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            44666778899997776544 577788775421111111 10011    011 11112234567888899988776 554


Q ss_pred             CCeE-----EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          138 TGKC-----TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       138 ~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      .+..     ++.++-...++..+.-..+.+-+++-+..|++.++.....+.+...  .-......+.++|++.++++- .
T Consensus       300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~Ll~e-~  376 (733)
T COG4590         300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYLLSE-D  376 (733)
T ss_pred             cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchheee-c
Confidence            3321     1222222233333333334456777778888887765443322211  111234567899999998865 4


Q ss_pred             CCeEEEEEcCCCc
Q 021459          213 DSTLKLWNYSAGK  225 (312)
Q Consensus       213 d~~i~v~d~~~~~  225 (312)
                      .|.++++.+++..
T Consensus       377 ~gki~~~~l~Nr~  389 (733)
T COG4590         377 QGKIRLAQLENRN  389 (733)
T ss_pred             CCceEEEEecCCC
Confidence            5678888876543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.18  E-value=12  Score=31.34  Aligned_cols=104  Identities=15%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCe------EEEEeCCCC---ceeee-----eeecccc--------cEEEEEEecCCCEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRT------LRIWDARTP---FDCLK-----TLRGHSD--------FVFCVNFNPQSNLI  122 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~------v~~wd~~~~---~~~~~-----~~~~~~~--------~v~~~~~~~~~~~l  122 (312)
                      +.+..|.+.+++..+++.+++|.      +...++...   ...+.     .+....+        -.-.+++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45677888865555666677776      554444320   00000     1111111        22356777788888


Q ss_pred             EEeecC------CcEEEEEcCCCeEEEEee---------------ecCcCeEEEEEccCCCEEEEeeC
Q 021459          123 VSGSFD------ESIRIWEVKTGKCTRVIR---------------AHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus       123 ~s~~~d------g~i~~wd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ++.-.+      ..|..++.. |+....+.               ......-+++++|+|+.|+++.+
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            877667      778888866 55433321               11234678999999996665543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.13  E-value=8.7  Score=29.59  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             CCEEEEeecC--CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459          119 SNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       119 ~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      ++++.+.+.-  ..|++||+.+++.+....-....+..=-...-+..+ ...=.+|.-..+|.++-+.+.++.-..+.  
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG--  133 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG--  133 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc--
Confidence            4555555543  469999999998765443221111111111112222 22335566677777765555444322211  


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459          196 SFAKFSPNGKFILVGTLDSTLKLWNYSA  223 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~  223 (312)
                      ..  ...|++.|..+....+++.-|..+
T Consensus       134 Wg--Lt~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         134 WG--LTSDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             ee--eecCCcceEeeCCceEEEecCHHH
Confidence            11  234555666665555666655443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.94  E-value=0.053  Score=46.34  Aligned_cols=143  Identities=16%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCCeEEEEeCCCCceeeeeeec
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      ...|-|.+.-++.++.+..+..||-..... ... ..+.....++|..++..++. +-..+.+.+||+.+.....-...+
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhccee-ccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            456778777788888888888887543222 111 23445567889888875554 445678999998753221111111


Q ss_pred             ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459          106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                       ...-.-..|++....++.+...|.+.+++-.+.+.+.....|...+.++++.+.+. .+.++.|..+
T Consensus       117 -~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  117 -TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             -cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence             11111256788778888888899999998776655545545778899999988764 4555555443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.90  E-value=13  Score=31.13  Aligned_cols=66  Identities=17%  Similarity=0.105  Sum_probs=33.1

Q ss_pred             CCCeEEEEcC-----CCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeE
Q 021459           75 DSHYICSASD-----DRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKC  141 (312)
Q Consensus        75 ~~~~l~~~~~-----d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~  141 (312)
                      ++++.+.|+.     ...+..||+.+.. ..+..+.... ........-++++.+.|+.++    .+..||+++.+-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4556666653     2357788876532 1111111111 111122233566777777654    356888887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.83  E-value=20  Score=33.38  Aligned_cols=103  Identities=11%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             CCCEEEEeecCCcEEEEEcCC-------C----e---------EEEEeeecCcCeEEEEEc--cCCCEEEEeeCCCeEEE
Q 021459          118 QSNLIVSGSFDESIRIWEVKT-------G----K---------CTRVIRAHSMPVTSVHFN--RDGSLIVSGSHDGTCKI  175 (312)
Q Consensus       118 ~~~~l~s~~~dg~i~~wd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i  175 (312)
                      ..+.|+.+..||.|.+|.+++       .    .         +-..+ .....+++++++  ...+++|+++....|.+
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            446788999999999997521       1    0         00111 123467899998  77888888888888888


Q ss_pred             EeCCC--Cceee--E-cccCCCCcEEEEEECC--CCC-EEEEEecCCeEEEEEc
Q 021459          176 WDAGE--GACLK--T-LIDDKDPAVSFAKFSP--NGK-FILVGTLDSTLKLWNY  221 (312)
Q Consensus       176 wd~~~--~~~~~--~-~~~~~~~~~~~~~~~~--~~~-~l~~~~~d~~i~v~d~  221 (312)
                      |-...  .+...  . ...+.-+.++++...-  .|. +|++++..|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            75432  11111  1 1122234455444332  233 7888899999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.55  E-value=16  Score=31.82  Aligned_cols=143  Identities=14%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeeccCCEEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCC--c---
Q 021459           33 DGTLLASASLDKTVIIWSASSLA-----LVHRFVGHSEGISDLAWSS-----DSHYICSASDDRTLRIWDARTP--F---   97 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~--~---   97 (312)
                      +...|+.|+.+|.++||+.....     ++.. ..-..+|..++.-.     +...||+ -.-+.+.+|.+...  .   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34589999999999999876433     1111 12356788776542     2234544 56778888876221  0   


Q ss_pred             ---eeeeeeeccc--ccEEEEEEec----C-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           98 ---DCLKTLRGHS--DFVFCVNFNP----Q-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        98 ---~~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                         -.+.....|.  .....++..|    . ...+..-+.||.+.+|+-+.......+.. -.-.-.+.+.+....|+++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence               1122223332  2223333333    2 35788889999999999665433333322 1112346778888889999


Q ss_pred             eCCCeEEEEeC
Q 021459          168 SHDGTCKIWDA  178 (312)
Q Consensus       168 ~~d~~i~iwd~  178 (312)
                      +.+..+..|..
T Consensus       193 sss~~l~~Yky  203 (418)
T PF14727_consen  193 SSSWTLECYKY  203 (418)
T ss_pred             cCceeEEEecH
Confidence            98888887753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.04  E-value=22  Score=32.95  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=40.6

Q ss_pred             EEECCCCCEEEEEeCC----------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           28 VKFSNDGTLLASASLD----------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ++..|-|.-||..-.+          -.|+|++.. |.++.++.-....+-.+.|+.+..+| +...+|.+++|++..
T Consensus        38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLG  113 (829)
T ss_pred             EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecch
Confidence            4445555545444333          347777755 34433333233477789999777655 557999999999754

>PRK13684 Ycf48-like protein; Provisional

Probab=87.78  E-value=16  Score=30.85  Aligned_cols=152  Identities=14%  Similarity=0.101  Sum_probs=73.7

Q ss_pred             cccEEEEEEecCCCEEEEeecCCcEEE-EEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459          107 SDFVFCVNFNPQSNLIVSGSFDESIRI-WEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL  184 (312)
Q Consensus       107 ~~~v~~~~~~~~~~~l~s~~~dg~i~~-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (312)
                      ...+..+.+.|++..+++ +..|.+.. +| ..++.-... ......++.+.+.++++.++++ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            346778888888766555 44565543 22 222222222 2234568899999998877665 4566643222222211


Q ss_pred             eEcccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc-eeEEEEEEEccCCcEEEEeecCCe
Q 021459          185 KTLIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       185 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      ......   ....+..+.+.+++..+++ +.+|.+.. ....++.-......... .......+. .+++.+ ..+..|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~-~~G~~G~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL-DPEKGF-VLGQRGV  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe-CCCceE-EECCCce
Confidence            111111   1123455667887775554 45665543 33333322221111111 112222232 334444 4567788


Q ss_pred             EEEEE
Q 021459          261 VYVWD  265 (312)
Q Consensus       261 i~iwd  265 (312)
                      |.-|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            87775

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.76  E-value=2.9  Score=22.37  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=22.8

Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCCcceEEEeee
Q 021459           32 NDGTLLASAS-LDKTVIIWSASSLALVHRFVG   62 (312)
Q Consensus        32 ~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~   62 (312)
                      |+++.|+.+. .++.|.++|..+++.+.++..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677665544 578999999988887776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02153 epithiospecifier protein

Probab=87.73  E-value=16  Score=30.85  Aligned_cols=108  Identities=12%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeec----CcC-eEEEEEccCCCEEEEeeCC-----------
Q 021459          118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAH----SMP-VTSVHFNRDGSLIVSGSHD-----------  170 (312)
Q Consensus       118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~----~~~-v~~~~~~~~~~~l~~~~~d-----------  170 (312)
                      +++.++.|+.+           ..+.+||.++.+-.. +...    ... -.+++. -++++++.++.+           
T Consensus       137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~  214 (341)
T PLN02153        137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDY  214 (341)
T ss_pred             CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccce
Confidence            45666777653           247788887664322 1111    000 111222 255666655432           


Q ss_pred             --CeEEEEeCCCCceeeEcc-cC-CCCcEEEEEECCCCCEEEEEecC--------------CeEEEEEcCCCcEE
Q 021459          171 --GTCKIWDAGEGACLKTLI-DD-KDPAVSFAKFSPNGKFILVGTLD--------------STLKLWNYSAGKFL  227 (312)
Q Consensus       171 --~~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~  227 (312)
                        ..+.+||+.+.+...... .. ..+.........++++++.|+..              +.+..||..+.+..
T Consensus       215 ~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        215 ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence              457889988765543211 10 11111111222356677777742              25777887666543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.67  E-value=5.3  Score=36.23  Aligned_cols=36  Identities=22%  Similarity=0.468  Sum_probs=27.4

Q ss_pred             EEEEECC----CCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          196 SFAKFSP----NGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       196 ~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .....+.    +..+|++-+.|+.+|+||+.++.++....
T Consensus       218 ~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  218 ASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             ceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            3344555    67899999999999999999999866543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.51  E-value=12  Score=29.38  Aligned_cols=131  Identities=15%  Similarity=0.225  Sum_probs=76.0

Q ss_pred             CEEEEEEccCCCeEEEEcC----------CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEE
Q 021459           66 GISDLAWSSDSHYICSASD----------DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIW  134 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~w  134 (312)
                      ..+.-..+|+|++.. |..          .|.++.|-....   +......-+.-..++|+.+.+.+. +-+.+-+|.-|
T Consensus       110 R~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             ccccCccCCCCceee-eeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            344556788998843 322          144555543221   111222222234577887776654 44556677667


Q ss_pred             E--cCCCeE-----EEEeee---cCc-CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEEC
Q 021459          135 E--VKTGKC-----TRVIRA---HSM-PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFS  201 (312)
Q Consensus       135 d--~~~~~~-----~~~~~~---~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (312)
                      |  ..+|..     +..++.   ... ..-.+++..+|++.++.-..++|...|+.+++.+.++.-. ...+++++|.
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence            6  555532     111211   111 1234556678889999989999999999999998887654 4456666663

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.32  E-value=8.4  Score=27.29  Aligned_cols=111  Identities=10%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             EEecCCCEEEEeecCCcEEEEEcCCCe--------EEEEeeecCcCeEEEEEcc-----CCCEEEEeeCCCeEEEEeCCC
Q 021459          114 NFNPQSNLIVSGSFDESIRIWEVKTGK--------CTRVIRAHSMPVTSVHFNR-----DGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      +|......|++++..|.|.+++.....        .+..+. -...|++++-.+     +...|+.|+.. .+..||+.+
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEccc
Confidence            455555677778888888888765321        222222 234566665433     33466666654 788999887


Q ss_pred             CceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          181 GACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      +.-+... ..+.-..+..-.+.....-++..+.+-.|.-||....+.
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            6543211 111111222223333233344444456677777655443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.96  E-value=5.6  Score=29.78  Aligned_cols=31  Identities=10%  Similarity=0.204  Sum_probs=24.4

Q ss_pred             ccEEEEEEecCC------CEEEEeecCCcEEEEEcCC
Q 021459          108 DFVFCVNFNPQS------NLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus       108 ~~v~~~~~~~~~------~~l~s~~~dg~i~~wd~~~  138 (312)
                      ..+..++|+|.|      -.|++...++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999954      3678888899999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.47  E-value=18  Score=30.36  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             CCcEEEEeecCCeEEEEECCchhee---ec-ccCCccceEEEEEcCCCceEEEeeecC
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMI---QK-LDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~---~~-~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      .+.++++.-..+.|....+.....+   .. +......+..++..|||..+++...+|
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G  327 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG  327 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence            4567777777778888777533222   12 233445789999999999888776444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.45  E-value=3.5  Score=22.01  Aligned_cols=31  Identities=13%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             cCCCEEEEee-cCCcEEEEEcCCCeEEEEeee
Q 021459          117 PQSNLIVSGS-FDESIRIWEVKTGKCTRVIRA  147 (312)
Q Consensus       117 ~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~  147 (312)
                      |+++.++++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4666665554 468899999988877766654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.02  E-value=14  Score=28.53  Aligned_cols=143  Identities=17%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCcceEEEeeecc-----CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec
Q 021459           33 DGTLLASASLD--KTVIIWSASSLALVHRFVGHS-----EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        33 ~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      +|.++.+.+.-  ..|++|++.+++.+....-..     ++++.+   .+.-+.++ =.+|.-..+|.++- +.+..+. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd~~y~LT-w~egvaf~~d~~t~-~~lg~~~-  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GDYFYQLT-WKEGVAFKYDADTL-EELGRFS-  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec---cceEEEEE-eccceeEEEChHHh-hhhcccc-
Confidence            34666665543  468999999887765432111     112111   11112333 25677777877652 3333322 


Q ss_pred             ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCe---EEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPV---TSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ..+.-+.++  .|++.|+.++...+++.-|.++-......+  ....||   +-+.|- +|...+-.=.+..|...|..+
T Consensus       129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence            122333443  344556666666677777765533322221  112222   334442 455555444444555555555


Q ss_pred             Ccee
Q 021459          181 GACL  184 (312)
Q Consensus       181 ~~~~  184 (312)
                      |+..
T Consensus       206 GrV~  209 (262)
T COG3823         206 GRVV  209 (262)
T ss_pred             CcEE
Confidence            5543

>PLN02193 nitrile-specifier protein

Probab=86.00  E-value=24  Score=31.34  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             CCEEEEeecC-------CcEEEEEcCCCeEEEEeeec-CcC----eEEEEEccCCCEEEEeeCC-----CeEEEEeCCCC
Q 021459          119 SNLIVSGSFD-------ESIRIWEVKTGKCTRVIRAH-SMP----VTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEG  181 (312)
Q Consensus       119 ~~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~-~~~----v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  181 (312)
                      +..++.|+.+       ..+..||+.+.+-.. .... ..+    .......-++.+++.|+.+     +.+..+|+.+.
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            4556666643       247788887764332 1110 011    1111112255666777654     35778898876


Q ss_pred             ceeeEcccC--CCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEc--cCCceeEEEEEEEccCCcEE
Q 021459          182 ACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTG--HTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       182 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l  252 (312)
                      +........  ..+........-++++++.|+.+     ..+..||+.+.+....-..  ...........  ..+++++
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~--~~~gkiy  332 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE--VVQGKVW  332 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE--EECCcEE
Confidence            543311110  11111111122355666777654     3467788777655332110  00000111111  1246677


Q ss_pred             EEeecC----CeEEEEECCch
Q 021459          253 VSGSED----NCVYVWDLQQK  269 (312)
Q Consensus       253 ~~~~~d----g~i~iwd~~~~  269 (312)
                      +.++.+    ..+.+||+.+.
T Consensus       333 viGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEECCCCCccCceEEEECCCC
Confidence            776655    45888998764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.87  E-value=5.9  Score=34.90  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEe---------CCCcceEE--E-------ee--eccCCEEEEEEccCC---Ce
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWS---------ASSLALVH--R-------FV--GHSEGISDLAWSSDS---HY   78 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~---------~~~~~~~~--~-------~~--~~~~~v~~~~~~~~~---~~   78 (312)
                      .-.|..+..++.|..++-+|.+|.+..+=         ++.++..-  +       +.  ...-.+...+|+|+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            44678889999999999999999765542         12232211  1       11  111245678999975   57


Q ss_pred             EEEEcCCCeEEEEeCCCCce
Q 021459           79 ICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~   98 (312)
                      |..-+.|..+++||+....+
T Consensus       183 L~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEEecCcEEEEEecCCcch
Confidence            77778899999999876433

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.49  E-value=4.9  Score=34.68  Aligned_cols=163  Identities=13%  Similarity=0.116  Sum_probs=87.6

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-Eeeec-cC----CEE-EEEEccCCCeEEEEcCCCeE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-RFVGH-SE----GIS-DLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~-~~----~v~-~~~~~~~~~~l~~~~~d~~v   88 (312)
                      +++......|..+-..|||+.+..-+. ..+.|+++.+..... ++... .+    .|+ ++..-.-|.-|+.++.||-|
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            335556677888889999997765444 567777765433211 11111 11    111 11122345567788899988


Q ss_pred             EEE-eCCCCcee----eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE
Q 021459           89 RIW-DARTPFDC----LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus        89 ~~w-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (312)
                      .-| |++.....    ++.++-....+..+.-....+-+++-+.+|++..+.....+.+-... -.....-++++|++.+
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch
Confidence            887 54432111    11111111222222111123457777888888877654444332222 1224567889999988


Q ss_pred             EEEeeCCCeEEEEeCCCC
Q 021459          164 IVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~  181 (312)
                      +++- ..|.++++.+.+.
T Consensus       372 Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         372 LLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             heee-cCCceEEEEecCC
Confidence            7754 4567888876553

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.66  E-value=3.5  Score=26.90  Aligned_cols=56  Identities=23%  Similarity=0.291  Sum_probs=34.1

Q ss_pred             EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ..+..+|.+.-||..+++....+.+- .--+.|+++|++..++.+-.-.-.-.|.|.
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            34567889999999887653333332 245899999999988776444344555553

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.48  E-value=4.3  Score=21.36  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             ecccccceEEEEECCCCCEEEEE-eCC--CeEEEE
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASA-SLD--KTVIIW   49 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~-~~d--~~i~vw   49 (312)
                      +......-....|||||+.|+-. ..+  |...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34455567788999999977654 444  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.36  E-value=0.15  Score=43.78  Aligned_cols=145  Identities=10%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcCCCeEEEEe
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVI  145 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~  145 (312)
                      .....|-+.+.-++.++.+-.+..||-...   .......++....++|+.++..++ .+-..+.+.+||+.+......-
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq---~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ---VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcc---eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            345678887777888888888888885431   111112345566778888776544 4456688999999765321111


Q ss_pred             eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459          146 RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTL  216 (312)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
                      .+-...-.-+.|++....++.+...+.+.+++.++.+.+-.. +.+.......++.+.+. .+.++.|..+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccce-eeecCcHHHH
Confidence            111111122678888888888889999999998775543322 32334455556666653 4444444443

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.74  E-value=37  Score=31.44  Aligned_cols=153  Identities=13%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeC---------CCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CC---eE
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSA---------SSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DR---TL   88 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---~v   88 (312)
                      ++.|-+++|.++++.++..-.+|.|.+|+.         .....-..-..+..-|..........++++.+. ++   ..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE


Q ss_pred             EEEeCCCCceeeeeee---cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-------CcCeEEEEEc
Q 021459           89 RIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-------SMPVTSVHFN  158 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~~  158 (312)
                      +++.+......+..+.   .+........|.-+...|.-- .+++|.+|++.+-+..+++...       ...+.-...+
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC


Q ss_pred             cCCCEEEEeeCCCeEEEEeC
Q 021459          159 RDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~  178 (312)
                      ++.-++   +.++.|.+.|+
T Consensus       288 ~nRvLL---s~~nkIyLld~  304 (670)
T PF10395_consen  288 PNRVLL---SVNNKIYLLDL  304 (670)
T ss_pred             CCeEEE---EcCCEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.45  E-value=26  Score=29.49  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEe----eeccCCEEEEEEccC---CCeEEEEcC-C--------
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRF----VGHSEGISDLAWSSD---SHYICSASD-D--------   85 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d--------   85 (312)
                      -..++|.|+|+++++ -..|.|++++ ..+..   +..+    .........++++|+   ..+|..... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            357899999988776 4589999998 33332   2222    123456789999995   233333222 1        


Q ss_pred             CeEEEEeCCCC-------ceeeeeeec---ccccEEEEEEecCCCEEEEeecC
Q 021459           86 RTLRIWDARTP-------FDCLKTLRG---HSDFVFCVNFNPQSNLIVSGSFD  128 (312)
Q Consensus        86 ~~v~~wd~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
                      ..|.-|.....       ...+..+..   .......+.|.||+.++++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            12333333221       111112221   22345679999999777666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.40  E-value=23  Score=28.95  Aligned_cols=153  Identities=18%  Similarity=0.165  Sum_probs=84.3

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      .-+..+.++  +++...+..+.-+++.|+.++......-. .-++...++..  .|++...+..+.-..+.|+.+.+...
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            344556665  45666666777899999987654322111 11233344433  47888888867667788887654322


Q ss_pred             ---EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459          144 ---VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLW  219 (312)
Q Consensus       144 ---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~  219 (312)
                         ...........++.+  |++-..+..|+-+.+-|+.+.....-+. ....+.+..+..+++-.+++..  +.-+.+-
T Consensus       163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv  238 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV  238 (370)
T ss_pred             eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence               122222223445554  5566677788889999887644322111 1123345555566665555543  2335555


Q ss_pred             EcCCCc
Q 021459          220 NYSAGK  225 (312)
Q Consensus       220 d~~~~~  225 (312)
                      |..+.+
T Consensus       239 d~s~~s  244 (370)
T COG5276         239 DVSGPS  244 (370)
T ss_pred             ecCCCC
Confidence            655444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.11  E-value=23  Score=28.69  Aligned_cols=188  Identities=14%  Similarity=0.088  Sum_probs=102.8

Q ss_pred             EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE-Ee
Q 021459           67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR-VI  145 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~  145 (312)
                      -..++-.|||..-+++...+.+--.|..++.....-+ +....-..+...||+..-++-+.. .|.-.|-++.+..+ .+
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            3467778888888888777777777777653222222 222223345667887766554333 45555655544322 11


Q ss_pred             --eecCcCeEEEEEccCCCEEEEeeCC---------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          146 --RAHSMPVTSVHFNRDGSLIVSGSHD---------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       146 --~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                        +..........|.+.|.+.+++...         +.|++|+...           ...-.-++..|+|..-.+.-.++
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEEecccc
Confidence              1123346778899999988887532         2344444322           22223345678888777766666


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      .|-..|...+.. ..+.............+..+.++.-++-...|.+..+|...
T Consensus       211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            666666554421 11111111111112223345566667766677777776543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=82.29  E-value=31  Score=29.59  Aligned_cols=12  Identities=8%  Similarity=0.218  Sum_probs=8.8

Q ss_pred             cEEEEEcCCCeE
Q 021459          130 SIRIWEVKTGKC  141 (312)
Q Consensus       130 ~i~~wd~~~~~~  141 (312)
                      .+.+||..+++-
T Consensus       190 ~v~~YD~~t~~W  201 (376)
T PRK14131        190 EVLSYDPSTNQW  201 (376)
T ss_pred             eEEEEECCCCee
Confidence            478899877654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.29  E-value=35  Score=30.14  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEe----e-eccCCEEEEEEccCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRF----V-GHSEGISDLAWSSDS   76 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~----~-~~~~~v~~~~~~~~~   76 (312)
                      .-..-..++|.|||++|++-...|.|++++..++..  +..+    . .-......|+++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            344566789999999888876569999987654422  1111    1 124678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=81.51  E-value=52  Score=31.63  Aligned_cols=79  Identities=6%  Similarity=-0.056  Sum_probs=50.3

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCC-----eEEEEeCCCCceeeeeeecccccEEEEEEec
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDR-----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNP  117 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  117 (312)
                      +.+.+-|.........-..+...|.+-+|+|||+.|+- .+.++     .|++-|+.+...-+..+......|..-...+
T Consensus       329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e  408 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE  408 (912)
T ss_pred             CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence            46666676665544321346788999999999999887 44443     4777788764433344444455666666666


Q ss_pred             CCCEE
Q 021459          118 QSNLI  122 (312)
Q Consensus       118 ~~~~l  122 (312)
                      +|...
T Consensus       409 ~gdt~  413 (912)
T TIGR02171       409 NGDTV  413 (912)
T ss_pred             CCCeE
Confidence            66543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=81.50  E-value=40  Score=30.30  Aligned_cols=247  Identities=13%  Similarity=0.207  Sum_probs=111.6

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeec-cCCEEEEEEccCC-CeEEEEcCCC--eEEEEeCCCCceeeeeee
Q 021459           31 SNDGTLLASASLDKTVIIWSASSLA--LVHRFVGH-SEGISDLAWSSDS-HYICSASDDR--TLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        31 s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~--~v~~wd~~~~~~~~~~~~  104 (312)
                      ..++..++-+..+|.+....+....  ......+. .....++++..++ .+|+.|+.-|  .+..+.... .+.+..+.
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEecc
Confidence            4567788888999999877665433  12222333 4555677777665 4677776655  444444221 23333443


Q ss_pred             cccccEEEEEEecC----CC------EEEEee---cCCcEEEEEcCCCeEEE--Ee--eecC--cCeEEEEEcc-CCCEE
Q 021459          105 GHSDFVFCVNFNPQ----SN------LIVSGS---FDESIRIWEVKTGKCTR--VI--RAHS--MPVTSVHFNR-DGSLI  164 (312)
Q Consensus       105 ~~~~~v~~~~~~~~----~~------~l~s~~---~dg~i~~wd~~~~~~~~--~~--~~~~--~~v~~~~~~~-~~~~l  164 (312)
                       .-++|..++..+.    ..      .+++++   .+|.+++..  .|-...  ..  ..-.  ..++.+.... ++.++
T Consensus       298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l  374 (504)
T PF10433_consen  298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL  374 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred             -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence             3367777777531    11      455543   457787763  332222  11  1111  1233333222 24566


Q ss_pred             EEeeCCCeEEEEeCC---CCceeeEc----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459          165 VSGSHDGTCKIWDAG---EGACLKTL----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                      +.+..+.+ +++.+.   ....+...    .....+.+....+.  +..++=.+ ...|++.+...++....+....+. 
T Consensus       375 v~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~-  449 (504)
T PF10433_consen  375 VLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGS-  449 (504)
T ss_dssp             EEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS--
T ss_pred             EEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCC-
Confidence            66655543 344332   12222111    11111122222222  23333333 345888887777666555433222 


Q ss_pred             eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-----CCccceEEEEEcC
Q 021459          238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----GHTDSVISVTCHP  289 (312)
Q Consensus       238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~p  289 (312)
                       .+..+.  -++..++.+-.+|.+..+.+..........     .....|.|+..+|
T Consensus       450 -~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  450 -IIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             ---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             -eEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence             122222  235567777778888888876544432211     1356788888776

...

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.73  E-value=52  Score=31.10  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             EEEEEecCCCEEEEeecCCc-----EEEEEcCCCeEEEEe--e-ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459          111 FCVNFNPQSNLIVSGSFDES-----IRIWEVKTGKCTRVI--R-AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA  182 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (312)
                      ..++|-|+|..+++-+.||.     |.++.. +|-....+  + .-...+...+|+-....++ ....+.+.+|-..+..
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceE
Confidence            45889999999998876552     445542 22111111  0 1122344556654444333 3345688999776644


Q ss_pred             eeeEcccCCCCcEEEEEECCCCC
Q 021459          183 CLKTLIDDKDPAVSFAKFSPNGK  205 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~  205 (312)
                      ...... -..+.+..+.|+|..+
T Consensus       328 WYLK~e-~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         328 WYLKVE-RQIPGISYVKWHPEEK  349 (1243)
T ss_pred             EEEEEe-ecCCCcceeeeccccC
Confidence            322211 1234566778888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-114
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-114
2h9l_A	329	Wdr5delta23 Length = 329		1e-114
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-114
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-114
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-114
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-114
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-114
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-114
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-114
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-113
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-113
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-113
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-112
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-112
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-112
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-112
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-43
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-37
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-16
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-35
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-24
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-32
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-29
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-17
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-27
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-26
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-19
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-26
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-19
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-25
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-25
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-14
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-25
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-23
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-14
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-23
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-23
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-23
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-22
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-22
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-20
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-20
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-15
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-20
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-15
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-20
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-20
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-20
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-20
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-20
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-20
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-20
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-15
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-19
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-19
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-19
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-09
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-19
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-19
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-19
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-18
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-17
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-17
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-17
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-16
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-16
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-15
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-16
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-13
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-13
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		7e-12
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-13
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-12
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-10
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-10
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		7e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-10
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-10
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		6e-09
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-09
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-07
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-07
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-07
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-07
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-07
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		9e-07
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		1e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-06
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		6e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		6e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		3e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		3e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		4e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 32  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 91
Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 92  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 270
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 330
Query: 307 VWVQD 311
           +W  D
Sbjct: 331 LWKSD 335

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89
Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Query: 307 VWVQD 311
           +W  D
Sbjct: 329 LWKSD 333

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 21  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 80
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 81  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 320 KTIKLWKSD 328

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 4   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 303 KTIKLWKSD 311

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 309 KTIKLWKSD 317

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 4   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 64  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 303 KTIKLWKSD 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 7   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 66
Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 67  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 245
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 246 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 305
Query: 307 VWVQD 311
           +W  D
Sbjct: 306 LWKSD 310

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 309 KTIKLWKSD 317

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 5   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 65  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 304 KTIKLWKSD 312

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 9   SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 69  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 308 KTIKLWKSD 316

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 10  SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 309 KTIKLWKSD 317

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/305 (64%), Positives = 235/305 (77%), Gaps = 2/305 (0%)
Query: 8   PYKPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
           P KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  G
Sbjct: 4   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 67  ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
           ISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGS
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           FDES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKT
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
           LIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSV
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 242
Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           T GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++
Sbjct: 243 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 302
Query: 307 VWVQD 311
           +W  D
Sbjct: 303 LWKSD 307

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/309 (63%), Positives = 236/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP Y    TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 7   SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTG C + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 306 KTIKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/309 (63%), Positives = 235/309 (76%), Gaps = 2/309 (0%)
Query: 4   AQTPPYKP-YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           ++  P KP Y    TL  H++AVS VKFS +G  LAS+S DK + IW A          G
Sbjct: 7   SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           H  GISD+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLI
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGSFDES+RIW+VKTG C + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G 
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
           CLKTLIDD +P VSF KFSPNGK+IL  TLD+ LKLW+YS GK LK YTGH N+KYCI +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
            FSVT GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 303 RTVRVWVQD 311
           +T+++W  D
Sbjct: 306 KTIKLWKSD 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10  KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           KP    K TL  H++AVS VKFS +G  LA++S DK + IW A          GH  GIS
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           D+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
           DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT 
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 309 VQD 311
             D
Sbjct: 312 KSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10  KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  GIS
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           D+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
           DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT 
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Query: 309 VQD 311
             D
Sbjct: 312 KSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 10  KPYRHFK-TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           KP    K TL  H++AVS VKFS +G  LAS+S DK + IW A          GH  GIS
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           D+AWSSDS+ + SASDD+TL+IWD  +   CLKTL+GHS++VFC NFNPQSNLIVSGSFD
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           ES+RIW+VKTGKC + + AHS PV++VHFNRDGSLIVS S+DG C+IWD   G CLKTLI
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248
           DD +P VSF KFSPNGK+IL  TLD+TLKLW+YS GK LK YTGH N+KYCI + FSVT 
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           GK+IVSGSEDN VY+W+LQ K ++QKL GHTD VIS  CHPTEN IASA L+ D+T++++
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Query: 309 VQD 311
             D
Sbjct: 312 KSD 314

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 165/294 (56%), Gaps = 13/294 (4%)
Query: 15  FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
            +TLT HS +V  V FS DG  +ASAS DKTV +W+ +   L+    GHS  +  +A+S 
Sbjct: 91  LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP 149
Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
           D   I SASDD+T+++W+       L+TL GHS  V+ V F+P    I S S D+++++W
Sbjct: 150 DGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
             + G+  + +  HS  V  V F+ DG  I S S D T K+W+   G  L+TL      +
Sbjct: 208 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS 264
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
           V+   F P+G+ I   + D T+KLWN + G+ L+  TGH++  + +   FS  +G+ I S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFS-PDGQTIAS 320
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
            S+D  V +W+ +    +Q L GH+ SV  V   P    IASA    D+TV++W
Sbjct: 321 ASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASA--SDDKTVKLW 371

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 158/320 (49%), Gaps = 27/320 (8%)
Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
           P  P ++   L+ H   V+ V F    +++ SAS D T+ +W   +        GH++ +
Sbjct: 96  PRPPEKY--ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 68  SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
            D+++      + S S D T+++WD +  F+C++T+ GH   V  V+  P  + IVS S 
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
           D++I++WEV+TG C +    H   V  V  N+DG+LI S S+D T ++W      C   L
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 188 IDDKD--------PAVSFAKFSPN-----------GKFILVGTLDSTLKLWNYSAGKFLK 228
            + +         P  S++  S             G F+L G+ D T+K+W+ S G  L 
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
              GH N    +      + GK+I+S ++D  + VWD + K  ++ L+ H   V S+  H
Sbjct: 333 TLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Query: 289 PTENKIASAGLDGDRTVRVW 308
            T   + +  +  D+TV+VW
Sbjct: 390 KTAPYVVTGSV--DQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG 204
           +  H  PVT V F+   S++VS S D T K+WD   G   +TL    D +V    F  +G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSG 162
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
           K +   + D T+KLW++   + ++   GH +    ++S   + NG +IVS S D  + +W
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309
           ++Q    ++   GH + V  V   P ++    A    D+TVRVWV
Sbjct: 220 EVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 163/297 (54%), Gaps = 25/297 (8%)
Query: 16  KTLTAHS-RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
           K L  H    ++C++F   G  + S S D T+ +WSA +   +   VGH+ G+    WSS
Sbjct: 112 KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSS 165
Query: 75  D--SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
               + I S S DRTL++W+A T  +C+ TL GH+  V C++ + +   +VSGS D ++R
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
           +W+++TG+C  V+  H   V  V +  DG  +VSG++D   K+WD     CL TL    +
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 193 PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252
              S  +F  +G  ++ G+LD+++++W+   G  +   TGH +    +TS   + +   +
Sbjct: 281 RVYSL-QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKD-NIL 332
Query: 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC-HPTENKIASAGLDGDRTVRVW 308
           VSG+ D+ V +WD++    +Q L G      +VTC    +N + ++  DG  TV++W
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG--TVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 21/234 (8%)
Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVF-CVNFNPQSNLIVSGSFDESIRIW 134
           S YI     D   R  + ++P    K L+GH D V  C+ F    N IVSGS D ++++W
Sbjct: 91  SAYIRQHRIDTNWRRGELKSP----KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVW 144
Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
              TGKC R +  H+  V S    RD ++I+SGS D T K+W+A  G C+ TL       
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQM-RD-NIIISGSTDRTLKVWNAETGECIHTLYGHTS-- 200
Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
            +      + K ++ G+ D+TL++W+   G+ L +  GH     C+       +G+ +VS
Sbjct: 201 -TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVS 254
Query: 255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           G+ D  V VWD + +T +  L GHT+ V S+        + S  L  D ++RVW
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSL--DTSIRVW 304

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 49/330 (14%)
Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-------------- 66
           H+  V CVKFSNDG  LA+   +KT  ++  S  +LV R    S                
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 67  ----ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
               I  + +S D  ++ + ++DR +RIWD       +  L+GH   ++ +++ P  + +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGS D ++RIW+++TG+C+  +       T      DG  I +GS D   ++WD+  G 
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 183 CLKTLIDDKDP------AVSFAKFSPNGKFILVGTLDSTLKLWNY------------SAG 224
            ++ L  + +       +V    F+ +G+ ++ G+LD ++KLWN             ++G
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVIS 284
                Y GH   K  + S  +  N +YI+SGS+D  V  WD +    +  L GH +SVIS
Sbjct: 301 TCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 285 V------TCHPTENKIASAGLDGDRTVRVW 308
           V      +  P  N  A+    GD   R+W
Sbjct: 358 VAVANGSSLGPEYNVFATGS--GDCKARIW 385

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 13/262 (4%)
Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           + L  HS  VS V  SN+G    SAS D ++ +W+  +    ++F+GH++ +  +A+S D
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTL-RG-HSDFVFCVNFNPQ--SNLIVSGSFDESI 131
           +  I S   D  LR+W+ +   +C+ TL RG H+D+V CV F+P   + +IVSG +D  +
Sbjct: 121 NRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
           ++W++ TG+    ++ H+  VTSV  + DGSL  S   DG  ++WD  +G  L  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA--A 236
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-KIYTGHTNKKYCITSTFSV---T 247
              ++   FSPN ++ +    +  +++++      + ++   H   K  +    S+    
Sbjct: 237 GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 248 NGKYIVSGSEDNCVYVWDLQQK 269
           +G  + SG  DN + VW + + 
Sbjct: 296 DGSTLYSGYTDNVIRVWGVSEN 317

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 103 LRGHSDFV---FCVNFNPQSNLIVSGSFDESIRIW---------EVKTGKCTRVIRAHSM 150
           L GH  +V    C      +  +VS S D+++  W         E   G   R +  HS 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210
            V+ V  + +G+  VS S D + ++W+   G C    +      +S A FSP+ + I+ G
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA-FSPDNRQIVSG 127
Query: 211 TLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269
             D+ L++WN        +  G HT+   C+  + S+ +   IVSG  DN V VWDL   
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSL-DAPVIVSGGWDNLVKVWDLATG 186
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
            ++  L GHT+ V SVT  P  +  AS+  D D   R+W
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASS--DKDGVARLW 223

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 136/274 (49%), Gaps = 29/274 (10%)
Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           + LT HS  V  V  S+DG    S S D  + +W  ++     RFVGH++ +  +A+S D
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTL----RGHSDFVFCVNFNPQS--NLIVSGSFDE 129
           +  I SAS DRT+++W+  T  +C  T+     GH D+V CV F+P +    IVS S+D+
Sbjct: 484 NRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           ++++W +   K    +  H+  V++V  + DGSL  SG  DG   +WD  EG  L +L  
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-- 599
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF---LKIYTGHTNKK--------- 237
           + +  +    FSPN ++ L    +  +K+W+  +      LK+      +K         
Sbjct: 600 EANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658
Query: 238 -----YCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
                YC +  +S  +G  + SG  D  + VW +
Sbjct: 659 KRKVIYCTSLNWS-ADGSTLFSGYTDGVIRVWGI 691

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 100/216 (46%), Gaps = 13/216 (6%)
Query: 102 TLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT-----GKCTRVIRAHSMPVTS 154
           T+R H+D V  +   P  N  +IVS S D+SI +W++       G   R +  HS  V  
Sbjct: 377 TMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214
           V  + DG   +SGS DG  ++WD   G   +  +      +S A FS + + I+  + D 
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQIVSASRDR 494
Query: 215 TLKLWN-YSAGKFLKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYVWDLQQKTMI 272
           T+KLWN     K+     G  ++ +     FS  T    IVS S D  V VW+L    + 
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 273 QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
             L GHT  V +V   P  +  AS G DG   V +W
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDG--VVLLW 588

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 17/262 (6%)
Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           + L  HS  VS V  S+DG    S S D T+ +W  ++     RFVGH++ +  +A+SSD
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSN--LIVSGSFDESI 131
           +  I S S D+T+++W+  T   C  T++   HS++V CV F+P S+  +IVS  +D+ +
Sbjct: 140 NRQIVSGSRDKTIKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
           ++W +   K       H+  + +V  + DGSL  SG  DG   +WD  EG  L TL  D 
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DG 255
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-------KIYTGHTNKKYCITSTF 244
              ++   FSPN ++ L      ++K+W+   GK +        I T    +    TS  
Sbjct: 256 GDIINALCFSPN-RYWLCAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 245 SVTNGKYIVSGSEDNCVYVWDL 266
              +G+ + +G  DN V VW +
Sbjct: 314 WSADGQTLFAGYTDNLVRVWQV 335

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 26/290 (8%)
Query: 36  LLASASLDKTVIIWS----ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90
           ++ SAS DKT+I+W      ++  +  R + GHS  +SD+  SSD  +  S S D TLR+
Sbjct: 53  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 91  WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AH 148
           WD  T     +   GH+  V  V F+  +  IVSGS D++I++W    G C   ++  +H
Sbjct: 113 WDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESH 170
Query: 149 SMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
           S  V+ V F  N    +IVS   D   K+W+      LKT        ++    SP+G  
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 207 ILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
              G  D    LW+ + GK L    G       I +    +  +Y +  +    + +WDL
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDL 284
Query: 267 QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG--------DRTVRVW 308
           + K ++ +L     S  S    P    +A +  DG        D  VRVW
Sbjct: 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVW 333

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 17/262 (6%)
Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           + L  HS  VS V  S+DG    S S D T+ +W  ++     RFVGH++ +  +A+SSD
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSN--LIVSGSFDESI 131
           +  I S S D+T+++W+  T   C  T++   HS++V CV F+P S+  +IVS  +D+ +
Sbjct: 117 NRQIVSGSRDKTIKLWN--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
           ++W +   K       H+  + +V  + DGSL  SG  DG   +WD  EG  L TL  D 
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DG 232
Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL-------KIYTGHTNKKYCITSTF 244
              ++   FSPN ++ L      ++K+W+   GK +        I T    +    TS  
Sbjct: 233 GDIINALCFSPN-RYWLCAATGPSIKIWDLE-GKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 245 SVTNGKYIVSGSEDNCVYVWDL 266
              +G+ + +G  DN V VW +
Sbjct: 291 WSADGQTLFAGYTDNLVRVWQV 312

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 26/290 (8%)
Query: 36  LLASASLDKTVIIWS----ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90
           ++ SAS DKT+I+W      ++  +  R + GHS  +SD+  SSD  +  S S D TLR+
Sbjct: 30  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 91  WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AH 148
           WD  T     +   GH+  V  V F+  +  IVSGS D++I++W    G C   ++  +H
Sbjct: 90  WDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESH 147
Query: 149 SMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
           S  V+ V F  N    +IVS   D   K+W+      LKT        ++    SP+G  
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 207 ILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266
              G  D    LW+ + GK L    G       I +    +  +Y +  +    + +WDL
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDL 261
Query: 267 QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG--------DRTVRVW 308
           + K ++ +L     S  S    P    +A +  DG        D  VRVW
Sbjct: 262 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVW 310

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
           H+ AV    FS DG  +AS   DKT+ ++ A +   +     H + +   A+SSD  YI 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 81  SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT 138
           + S D+ ++IWD+ T    + T   HS+ V C +F  +SN  L+ +GS D  +++W++  
Sbjct: 681 TCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------IDDKD 192
            +C   +  H+  V    F+ D  L+ S S DGT ++WD       K++      +  +D
Sbjct: 740 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 799
Query: 193 PA------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFS 245
           P       V    +S +G  I+V   +  L    +++G   +I+TG H+  +YC    FS
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS 856
Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
             +   +++ S+  CV +W++  +  +    GH   V  V   P  +   +A    D+T+
Sbjct: 857 PYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTI 913
Query: 306 RVW 308
           RVW
Sbjct: 914 RVW 916

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
           V+R H+  V    F++DG  I S   D T +++ A  G  L  +   +D  +  A FS +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 675
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
             +I   + D  +K+W+ + GK +  Y  H+ +  C   T + +N   + +GS D  + +
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 734
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           WDL QK     + GHT+SV      P +  +AS   DG  T+R+W
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 22/303 (7%)
Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
           H+ AV    FS DG  +AS   DKT+ ++ A +   +     H + +   A+SSD  YI 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 81  SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKT 138
           + S D+ ++IWD+ T    + T   HS+ V C +F  +SN  L+ +GS D  +++W++  
Sbjct: 674 TCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------IDDKD 192
            +C   +  H+  V    F+ D  L+ S S DGT ++WD       K++      +  +D
Sbjct: 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792
Query: 193 PA------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFS 245
           P       V    +S +G  I+V   +  L    +++G   +I+TG H+  +YC    FS
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS 849
Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
             +   +++ S+  CV +W++  +  +    GH   V  V   P  +   +A    D+T+
Sbjct: 850 PYDHLAVIALSQ-YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTI 906
Query: 306 RVW 308
           RVW
Sbjct: 907 RVW 909

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
           V+R H+  V    F++DG  I S   D T +++ A  G  L  +   +D  +  A FS +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 668
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263
             +I   + D  +K+W+ + GK +  Y  H+ +  C   T + +N   + +GS D  + +
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT-NKSNHLLLATGSNDFFLKL 727
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           WDL QK     + GHT+SV      P +  +AS   DG  T+R+W
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG--TLRLW 770

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 22/259 (8%)
Query: 53  SLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC 112
           SL  +H     S+G+  L +  D   I S   D T++IWD  T  +C + L GH+  V C
Sbjct: 122 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLC 178
Query: 113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172
           + ++ +  +I++GS D ++R+W+V TG+    +  H   V  + FN    ++V+ S D +
Sbjct: 179 LQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRS 234
Query: 173 CKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY 230
             +WD        L+ ++     AV+   F  + K+I+  + D T+K+WN S  +F++  
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT 290
            GH     C+         + +VSGS DN + +WD++    ++ L+GH +    V C   
Sbjct: 293 NGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRF 344
Query: 291 ENK-IASAGLDGDRTVRVW 308
           +NK I S   DG   ++VW
Sbjct: 345 DNKRIVSGAYDG--KIKVW 361

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           R  +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A+
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
           +   +Y+     D    I++ +T    ++  R   GH+ ++ C  F    N IV+ S D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           +  +W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T   
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
             +  ++   F PNG     G+ D+T +L++  A + L  Y+ H N    ITS     +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           + +++G +D    VWD  +      L GH + V  +    T++ +A A    D  +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           R  +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A+
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
           +   +Y+     D    I++ +T    ++  R   GH+ ++ C  F    N IV+ S D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           +  +W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T   
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
             +  ++   F PNG     G+ D+T +L++  A + L  Y+ H N    ITS     +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           + +++G +D    VWD  +      L GH + V  +    T++ +A A    D  +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           R  +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A+
Sbjct: 57  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
           +   +Y+     D    I++ +T    ++  R   GH+ ++ C  F    N IV+ S D 
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 175
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           +  +W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T   
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 234
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
             +  ++   F PNG     G+ D+T +L++  A + L  Y+ H N    ITS     +G
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 293
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           + +++G +D    VWD  +      L GH + V  +    T++ +A A    D  +++W
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 350

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           R  +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A+
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
           +   +Y+     D    I++ +T    ++  R   GH+ ++ C  F    N IV+ S D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           +  +W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T   
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
             +  ++   F PNG     G+ D+T +L++  A + L  Y+ H N    ITS     +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           + +++G +D    VWD  +      L GH + V  +    T++ +A A    D  +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 8/299 (2%)
Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           R  +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A+
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDE 129
           +   +Y+     D    I++ +T    ++  R   GH+ ++ C  F    N IV+ S D 
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDT 164
Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
           +  +W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T   
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT- 223
Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
             +  ++   F PNG     G+ D+T +L++  A + L  Y+ H N    ITS     +G
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSG 282
Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           + +++G +D    VWD  +      L GH + V  +    T++ +A A    D  +++W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 26/275 (9%)
Query: 19  TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-------LVHRFVGHSEGISDLA 71
           TAH +A+  V +    +LLA+ S D TV IW+    A       L+    GH   +  +A
Sbjct: 55  TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 72  WSSDSHYICSASDDRTLRIWD---ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           WS+D +Y+ + S D+++ IW+   +   ++C+  L+ HS  V  V ++P   L+ S S+D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 129 ESIRIWE--VKTGKCTRVIRAHSMPVTSVHFNRDGSL--IVSGSHDGTCKIW-------- 176
           +++RIW+      +C  V+  H   V S  F++   +  + SGS D T ++W        
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234
Query: 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---FLKIYTGH 233
           D  E  C   L D     V    +  NG    VG  D  L ++    G+   F K    H
Sbjct: 235 DQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA-DGVLAVYEEVDGEWKVFAKRALCH 293
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268
              +  +     +     + +G +D  V  W L++
Sbjct: 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 15/225 (6%)
Query: 97  FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV----IRAHSMPV 152
            + +K+L+ + + ++  +F+    ++ +GS D  I++  VK    T +      AH   +
Sbjct: 4   INLIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI 61
Query: 153 TSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC------LKTLIDDKDPAVSFAKFSPNGKF 206
            SV +    SL+ +GS D T  IW   E A       L  +I+  +  V    +S +G +
Sbjct: 62  RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 207 ILVGTLDSTLKLWNY-SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265
           +   + D ++ +W    +G+  +  +        +       +   + S S D+ V +W 
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Query: 266 LQQKTM--IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
                   +  L+GH  +V S     TE          D TVRVW
Sbjct: 182 DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           Y+     +++      V   KF      +   S D  + +++ ++   V  F  H + I 
Sbjct: 42  YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
            +A      Y+ S SDD T+++W+    +   +T  GH  FV CV FNP+  +   SG  
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
           D ++++W          + TG+   V      P+       D   +++ S D T KIWD 
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
              +C+ TL +     VSFA F P    I+ G+ D TLK+WN S  K  K       + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSED 258
           CI +T       YI SG ++
Sbjct: 275 CI-ATHPTGRKNYIASGFDN 293

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88  LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
           + +W+  T  + +++++     V    F  + N I+ GS D  IR++   TG+      A
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
           H   + S+  +     ++SGS D T K+W+      L+   +  +  V    F+P     
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
              G LD T+K+W  S G+    +T  T ++  +     + + +  Y+++ S+D  + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           D Q K+ +  L+GH  +V     HPT   I S   DG  T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           Y+     +++      V   KF      +   S D  + +++ ++   V  F  H + I 
Sbjct: 42  YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
            +A      Y+ S SDD T+++W+    +   +T  GH  FV CV FNP+  +   SG  
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
           D ++++W          + TG+   V      P+       D   +++ S D T KIWD 
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
              +C+ TL +     VSFA F P    I+ G+ D TLK+WN S  K  K       + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSED 258
           CI +T       YI SG ++
Sbjct: 275 CI-ATHPTGRKNYIASGFDN 293

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88  LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
           + +W+  T  + +++++     V    F  + N I+ GS D  IR++   TG+      A
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
           H   + S+  +     ++SGS D T K+W+      L+   +  +  V    F+P     
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
              G LD T+K+W  S G+    +T  T ++  +     + + +  Y+++ S+D  + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           D Q K+ +  L+GH  +V     HPT   I S   DG  T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 129/308 (41%), Gaps = 19/308 (6%)
Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           Y+     +++      V   KF      +   S D  + +++ ++   V  F  H + I 
Sbjct: 42  YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSF 127
            +A      Y+ S SDD T+++W+    +   +T  GH  FV CV FNP+  +   SG  
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
           D ++++W          + TG+   V      P+       D   +++ S D T KIWD 
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
              +C+ TL +     VSFA F P    I+ G+ D TLK+WN S  K  K       + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
           CI +T       YI SG  DN   V  L        LD     V S   +   + I +A 
Sbjct: 275 CI-ATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Query: 299 LDGDRTVR 306
           + G+  V 
Sbjct: 333 IRGNEEVE 340

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88  LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
           + +W+  T  + +++++     V    F  + N I+ GS D  IR++   TG+      A
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
           H   + S+  +     ++SGS D T K+W+      L+   +  +  V    F+P     
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
              G LD T+K+W  S G+    +T  T ++  +     + + +  Y+++ S+D  + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           D Q K+ +  L+GH  +V     HPT   I S   DG  T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51  ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
           AS+  LV R    GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ 
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           +GHS  V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S+
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
           I+SGS D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            WN +  +    + GH +    +T++    +G  I S  +D  + +W+L  K  +  L  
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
             D V S+   P    +A+A   G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51  ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
           AS+  LV R    GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ 
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           +GHS  V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S+
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
           I+SGS D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            WN +  +    + GH +    +T++    +G  I S  +D  + +W+L  K  +  L  
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
             D V S+   P    +A+A   G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51  ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
           AS+  LV R    GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ 
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           +GHS  V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S+
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
           I+SGS D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            WN +  +    + GH +    +T++    +G  I S  +D  + +W+L  K  +  L  
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
             D V S+   P    +A+A   G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 51  ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
           AS+  LV R    GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ 
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           +GHS  V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S+
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
           I+SGS D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            WN +  +    + GH +    +T++    +G  I S  +D  + +W+L  K  +  L  
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
             D V S+   P    +A+A   G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 17/259 (6%)
Query: 54  LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTLRGHSD 108
           L L     GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ +GHS 
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168
            V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S+I+SGS
Sbjct: 61  IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLKLWNYS 222
            D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K WN +
Sbjct: 121 RDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV 282
             +    + GH +    +T++    +G  I S  +D  + +W+L  K  +  L    D V
Sbjct: 179 QFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEV 234
Query: 283 ISVTCHPTENKIASAGLDG 301
            S+   P    +A+A   G
Sbjct: 235 FSLAFSPNRYWLAAATATG 253

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 129/308 (41%), Gaps = 19/308 (6%)
Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           Y+     +++      V   KF      +   S D  + +++ ++   V  F  H + I 
Sbjct: 42  YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSF 127
            +A      Y+ S SDD T+++W+    +   +T  GH  FV CV FNP+  +   SG  
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 128 DESIRIWE---------VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
           D ++++W          + TG+   V      P+       D   +++ S D T KIWD 
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP------DKPYMITASDDLTIKIWDY 215
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
              +C+ TL +     VSFA F P    I+ G+ D TLK+WN S  K  K       + +
Sbjct: 216 QTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
           CI +T       YI SG  DN   V  L        LD     V S   +   + I +A 
Sbjct: 275 CI-ATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Query: 299 LDGDRTVR 306
           + G+  V 
Sbjct: 333 IRGNEEVE 340

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 88  LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA 147
           + IW+  T  + +++++     V    F  + N I+ GS D  IR++   TG+      A
Sbjct: 37  VEIWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
           H   + S+  +     ++SGS D T K+W+      L+   +  +  V    F+P     
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 208 LV-GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST--FSVTNGKYIVSGSEDNCVYVW 264
              G LD T+K+W  S G+    +T  T ++  +     + + +  Y+++ S+D  + +W
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           D Q K+ +  L+GH  +V     HPT   I S   DG  T+++W
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG--TLKIW 255

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 21/268 (7%)
Query: 11  PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
           P R FK    HS  V     + DG    SAS DKT+ +W  ++     RFVGH   +  +
Sbjct: 57  PVRSFK---GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV 113
Query: 71  AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVS 124
                +  I S S D+T+++W  +    CL TL GH+D+V  V   P       S  I+S
Sbjct: 114 DIDKKASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
              D+ ++ W +   +       H+  + ++  + DG+LI S   DG   +W+       
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW----NYSAGKFLKIYTGHTN--KKY 238
            TL   +D   S A FSPN ++ L     + +K++     Y        + G++   + +
Sbjct: 232 YTL-SAQDEVFSLA-FSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDL 266
            ++  +S  +G+ + +G  DN + VW +
Sbjct: 289 AVSLAWSA-DGQTLFAGYTDNVIRVWQV 315

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 123/264 (46%), Gaps = 19/264 (7%)
Query: 51  ASSLALVHR--FVGHSEGISDLAWSS-DSHYICSASDDRTLRIW----DARTPFDCLKTL 103
           AS+  LV R    GH+  ++ LA S+   + + SAS D+TL  W    D +     +++ 
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           +GHS  V            +S S+D+++R+W+V TG+  +    H   V SV  ++  S 
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF------ILVGTLDSTLK 217
           I+SGS D T K+W   +G CL TL+   D  VS  +  PN K       I+    D  +K
Sbjct: 122 IISGSRDKTIKVWTI-KGQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            WN +  +    + GH +    +T++    +G  I S  +D  + +W+L  K     L  
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 278 HTDSVISVTCHPTENKIASAGLDG 301
             D V S+   P    +A+A   G
Sbjct: 237 Q-DEVFSLAFSPNRYWLAAATATG 259

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 34  GTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICSASDDRTLRI 90
           GTLLAS   D+ + IW     + + + V   GH   +  +AWS   +Y+ SAS D T  I
Sbjct: 28  GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 91  WDA-RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG---KCTRVIR 146
           W   +  F+C+ TL GH + V  V + P  NL+ + S D+S+ +WEV      +C  V+ 
Sbjct: 88  WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPNG 204
           +H+  V  V ++    L+ S S+D T K++   E    C  TL   +    S A F P+G
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSG 206
Query: 205 KFILVGTLDSTLKLW-NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252
           + +   + D T+++W  Y  G    +    ++  +    T S  + + I
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 115 FNPQSNLIVSGSFDESIRIW--EVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDG 171
           +NP   L+ S   D  IRIW  E  +  C  V+   H   V  V ++  G+ + S S D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 172 TCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG---KF 226
           T  IW   +    C+ TL   ++   S A ++P+G  +   + D ++ +W        + 
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVA-WAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI--QKLDGHTDSVIS 284
           + +   HT     +       + + + S S D+ V ++  ++   +    L+GH  +V S
Sbjct: 143 VSVLNSHTQD---VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 285 VTCHPTENKIASAGLDGDRTVRVWVQ 310
           +   P+  ++AS     DRTVR+W Q
Sbjct: 200 LAFDPSGQRLASCS--DDRTVRIWRQ 223

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 31/256 (12%)
Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
           + +Y+ + +DD+ +R++D+      L  L GH   V+ + +     ++VSGS D ++R+W
Sbjct: 131 EDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 135 EVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
           ++K G CT V   H+  V  +     ++   IV+GS D T  +W   + + +    ++ D
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 193 PAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
             + F     N                    G  ++ G+ D+TL +W+ +  K L I +G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308
Query: 233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN 292
           HT++ Y   ST      K  +S S D  + +WDL+   ++  L GHT  V  +    ++ 
Sbjct: 309 HTDRIY---STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL--SDK 363
Query: 293 KIASAGLDGDRTVRVW 308
            + SA  DG  ++R W
Sbjct: 364 FLVSAAADG--SIRGW 377

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 31/256 (12%)
Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
           + +Y+ + +DD+ +R++D+      L  L GH   V+ + +     ++VSGS D ++R+W
Sbjct: 131 EDNYVITGADDKXIRVYDSINK-KFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 135 EVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD 192
           ++K G CT V   H+  V  +     ++   IV+GS D T  +W   + + +    ++ D
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 193 PAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
             + F     N                    G  ++ G+ D+TL +W+ +  K L I +G
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG 308
Query: 233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN 292
           HT++ Y   ST      K  +S S D  + +WDL+   +   L GHT  V  +    ++ 
Sbjct: 309 HTDRIY---STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL--SDK 363
Query: 293 KIASAGLDGDRTVRVW 308
            + SA  DG  ++R W
Sbjct: 364 FLVSAAADG--SIRGW 377

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 15  FKTLTAHSRAVSCV-----KFSNDGTLLASASLDKTVIIWSAS-----SLALVHRFVG-H 63
           F T   H+  + C       ++  G  +A   LD    ++  +     ++A   + V  H
Sbjct: 94  FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153
Query: 64  SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS--NL 121
           +  +S  ++++    I +AS D T  +WD  +    L++  GH   V C++  P    N 
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
            VSG  D+   +W++++G+C +    H   V SV +   G    SGS D TC+++D    
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL--R 270
Query: 182 ACLKTLIDDKDPAV---SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238
           A  +  I  K+  +   S   FS +G+ +  G  D T+ +W+   G  + I  GH N+  
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-- 328
Query: 239 CITSTFSVT-NGKYIVSGSEDNCVYVW 264
              ST  V+ +G    SGS D+ + VW
Sbjct: 329 --VSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH---F 157
           +TL+GH + V C+++      IVS S D  + +W+  T   T    A +MP T V    +
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT---TNKEHAVTMPCTWVMACAY 114
Query: 158 NRDGSLIVSGSHDGTCKIW----DAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212
              G  I  G  D  C ++    D  E  A  K  +      +S   F+ +   IL  + 
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI 272
           D T  LW+  +G+ L+ + GH     C+    S T G   VSG  D    VWD++    +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 273 QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           Q  + H   V SV  +P+ +  AS G D D T R++
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFAS-GSD-DATCRLY 267

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 122/296 (41%), Gaps = 19/296 (6%)
Query: 15  FKTLTAHSRAVSCVKFS----NDGTLLASASLDKTVIIWS--ASSLALVHRFVGHSEGIS 68
           FK   AH  A+  V +      +   + + SLD  V +W      L L     GH  G+ 
Sbjct: 25  FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
            +  S       S+S D  +R+WD            G  D  + + F+P S  + +G+  
Sbjct: 85  SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAFSPDSQYLATGTHV 143
Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
             + I+ V++GK    +      + S+ ++ DG  + SG+ DG   I+D   G  L TL 
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----NKKYCITSTF 244
               P  S   FSP+ + ++  + D  +K+++          +GH     N  +C   T 
Sbjct: 204 GHAMPIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT- 261
Query: 245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
                 + VS S D  V VWD+  +T +     H D V  V  +   +KI S G D
Sbjct: 262 ------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34  GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
           G +LA A LD +V +WSASS  ++        G  IS +AW  + +Y+   +    +++W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 92  DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
           D +     L+ +  HS  V  +++N  S ++ SGS    I   +V+  +     +  HS 
Sbjct: 186 DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGA--CLKTLIDDKDP--AVSFAKFSPNG 204
            V  + +  DG  + SG +D    +W +  GEG    L+T    +    AV++  +  N 
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 302
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
                GT D  +++WN  +G  L     H+     + S     + K ++SG     N + 
Sbjct: 303 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 358
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           +W       + +L GHT  V+S+T  P    +ASA    D T+R+W
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34  GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
           G +LA A LD +V +WSASS  ++        G  IS +AW  + +Y+   +    +++W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 92  DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
           D +     L+ +  HS  V  +++N  S ++ SGS    I   +V+  +     +  HS 
Sbjct: 175 DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGA--CLKTLIDDKDP--AVSFAKFSPNG 204
            V  + +  DG  + SG +D    +W +  GEG    L+T    +    AV++  +  N 
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
                GT D  +++WN  +G  L     H+     + S     + K ++SG     N + 
Sbjct: 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 347
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           +W       + +L GHT  V+S+T  P    +ASA    D T+R+W
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 391

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 21/286 (7%)
Query: 34  GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASDDRTLRIW 91
           G +LA A LD +V +WSASS  ++        G  IS +AW  + +Y+   +    +++W
Sbjct: 36  GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 92  DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSM 150
           D +     L+ +  HS  V  +++N  S ++ SGS    I   +V+  +     +  HS 
Sbjct: 95  DVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDA--GEGAC--LKTLIDDKDP--AVSFAKFSPNG 204
            V  + +  DG  + SG +D    +W +  GEG    L+T    +    AV++  +  N 
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS--EDNCVY 262
                GT D  +++WN  +G  L     H+     + S     + K ++SG     N + 
Sbjct: 212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----VCSILWSPHYKELISGHGFAQNQLV 267
Query: 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           +W       + +L GHT  V+S+T  P    +ASA    D T+R+W
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA--ADETLRLW 311

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 17/225 (7%)
Query: 16  KTLTAH-SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-----VGHSEGISD 69
           + LT H   A SC    +  T L + S D+T ++W  ++   +  F      GH+  +  
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 70  LAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           L+ +S +++   S S D T+R+WD R     ++T  GH   +  V F P      +GS D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 129 ESIRIWEVKTGKCTRVIRA------HSMP-VTSVHFNRDGSLIVSGSHDGTCKIWD---A 178
            + R+++++TG   +V         + +P VTSV F+  G L+ +G  +G C +WD   A
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330
Query: 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
                L TL +  +  +S    S +G  +  G+ D  LK+W +S 
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 131/304 (43%), Gaps = 25/304 (8%)
Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           +TL  HS  V  + ++ +   + SAS D  +I+W+A +    H    H   + + A++ +
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 76  SHYICSASDDRTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFD 128
              +     D    I++  +  D        + L GH  +     + P Q   +++GS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 129 ESIRIWEVKTGKCTRVI-----RAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGA 182
           ++  +W+V TG+   +        H+  V S+  N  + ++ +SGS D T ++WD    +
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----NKKY 238
                    +  ++  KF P+G+    G+ D T +L++   G  L++Y        N+  
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298
            +TS     +G+ + +G  +   YVWD     M+  L    +S         E +I+  G
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS--------HEGRISCLG 351
Query: 299 LDGD 302
           L  D
Sbjct: 352 LSSD 355

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 95  TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS 154
           T   C +TL+GHS  V+ +++ P+ N IVS S D  + +W   T + T  I+ H   V  
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 155 VHFNRDGSLIVSGSHDGTCKIWDA-------GEGACLKTLIDDKDPAVSFAKFSPNGKFI 207
             F  +G  +  G  D  C I++        G     + L   K  A S          +
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 208 LVGTLDSTLKLWNYSAGKFLKIY-----TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY 262
           + G+ D T  LW+ + G+ + I+     +GHT     ++ + +  N    +SGS D  V 
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD--VLSLSINSLNANMFISGSCDTTVR 231
Query: 263 VWDLQ-QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
           +WDL+     ++   GH   + SV   P   +  +   DG
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 18  LTAHSRAVSCV------KFSNDGTLLASASLDKTVIIWSASS------LALVHR-FVGHS 64
           L  HS  V+ +      K + D  +L S S DKTV+IW            + H+   GH+
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 65  EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVS 124
             +SDLA S ++ +  S+S D+TLR+WD RT     K   GH   V+ V F+P +  I+S
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 125 GSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFNRD----------GSLIVSGSHDG 171
              +  I++W +  G+C   +     HS  V+ V ++                 S   DG
Sbjct: 136 AGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
             K+W+      ++      +  V+    SPNGK+I  G  D  L +W+
Sbjct: 195 RLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 26/253 (10%)
Query: 73  SSDSHYICSASDDRTLRIW----DARTPFDCL--KTLRGHSDFVFCVNFNPQSNLIVSGS 126
           + DS  + S S D+T+ IW    + +  +  +  K L GH+ FV  +  + ++   +S S
Sbjct: 36  NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD-AGEGACLK 185
           +D+++R+W+++TG   +    H   V SV F+ D   I+S   +   K+W+  GE     
Sbjct: 96  WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
Query: 186 TLIDDKDPAVSFAKFSPNGK-----------FILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
              ++    VS  ++SP  K           F  VG  D  LK+WN +   F   YT   
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRLKVWNTN---FQIRYTFKA 211
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
           ++      + S  NGKYI +G +D  + +WD+   T  Q+      ++  +  +P   K+
Sbjct: 212 HESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP---KL 267
Query: 295 ASAGLDGDRTVRV 307
               +  D+ V++
Sbjct: 268 QWVAVGTDQGVKI 280

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 17  TLTAHSRAV---SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAW 72
            L AH+ +V     V FS +  L ASA  DKT+ +W    +  +  F G H++ +  LA 
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASA--DKTIKLWQNDKV--IKTFSGIHNDVVRHLAV 192
Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
             D H+I S S+D  +++ D  T  D L+T  GH  FV+C+   P  +++  G  D ++R
Sbjct: 193 VDDGHFI-SCSNDGLIKLVDXHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVR 249
Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
           IW  + G   +VI   ++ + SV    +G +IV GS D   +I+
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 22/310 (7%)
Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
           P+  Y+   TL  H + V  V   +D + +AS S D TV +WS     L          +
Sbjct: 4   PFTGYQLSATLKGHDQDVRDVVAVDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFL 62
Query: 68  SDLAWSSDSHYICSASDDRTLR--IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG 125
           + + + S+   +     D  +      A +  D L TL GH   V  ++F  Q  +++SG
Sbjct: 63  NSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG 120
Query: 126 SFDESIRIWEVKTGKCTRVIRAHSMPV---TSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           S+D++ ++W  K G     ++AH+  V     V F+ +  L  + S D T K+W   +  
Sbjct: 121 SWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFL--TASADKTIKLWQNDK-- 174
Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
            +KT     +  V       +G FI     D  +KL +   G  L+ Y GH +  YCI  
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIK- 232
Query: 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
              + NG  IVS  ED  V +W  +  ++ Q +     S+ SV C    + I  +    D
Sbjct: 233 --LLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGS---SD 286
Query: 303 RTVRVWVQDR 312
             VR++ Q++
Sbjct: 287 NLVRIFSQEK 296

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP-QSN 120
           GHS  +  LAW SD   + S  +D  ++IWDAR+      T   H+  V  V + P QSN
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF-TKTNHNAAVKAVAWCPWQSN 273
Query: 121 LIVS--GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS--GSHDGTCKIW 176
           L+ +  G+ D+ I  W   TG     + A S  VTS+ ++     I+S  G  D    IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 177 DAGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HT 234
                   K + I   D  V ++  SP+G+ +     D  LK W        ++Y G H 
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW--------RVYDGDHV 384
Query: 235 NKKYCITSTFS 245
            +   IT T S
Sbjct: 385 KRPIPITKTPS 395

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
           +V+ + +    +W+A  G+       D+   V+  K+S +G F+ VG  +  + +++  +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ-QKTMIQKLDGHTDSV 282
              L+   GH  +  C++      N   + SGS    ++  D++     I  L GH+  V
Sbjct: 166 QTKLRTMAGHQARVGCLS-----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 283 ISVTCHPTENKIASAGLDGDRTVRVW 308
             +       ++AS G   D  V++W
Sbjct: 221 CGLAWRSDGLQLASGG--NDNVVQIW 244

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 16/236 (6%)
Query: 6   TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGH 63
           T P       +  T HS   +  K S  G   AS  +   V IW  +    + +      
Sbjct: 43  TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 102
Query: 64  SEGISDLAWSSDSHYICSASDDRT----LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS 119
           S  + D++W S+S  I +  + R     + ++D  T       L G +  +  V+F P  
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSR 159
Query: 120 NL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
              I+SGS D ++ I+E    K       H+  V SV +N DGSL  S   DGT  +++ 
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 179 GEGACLKTLIDD--KDPAVSFAKF----SPNGKFILVGTLDSTLKLWNYSAGKFLK 228
            +G       DD  K+ A S + F    SP+G  I   + D T+K+WN +  K  K
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 148/381 (38%), Gaps = 102/381 (26%)
Query: 20  AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------------------------A 55
           AHS +V  + +S DGT +ASAS DKT+ IW+ ++L                        A
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 56  LVH-------RFV------------GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP 96
           LV         FV            GH++ I+ L+ S+D   + SA  +  +  WD  T 
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 97  FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI----------------------- 133
                    H+  +  +    + +L    S+D+ +++                       
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTV-SWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415
Query: 134 -------WEVKTGKCTRVIRAHS------MPVTS----VHFNRDGSLIVSGSHDGTCKIW 176
                   ++    C + I  +S      +P++     V  + D   +  G  D    ++
Sbjct: 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475
Query: 177 DAGEGACLKTLIDDKDPA-VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-----Y 230
               GA +  +     PA ++   FS NG F++    D + K+  YS     ++     +
Sbjct: 476 KL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSW 532
Query: 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT---MIQKLDGHTDSVISVTC 287
           T HT K  C++  +S  N + + +GS DN V VW++ + +   +I K   H  S ++   
Sbjct: 533 TFHTAKVACVS--WSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVI 588
Query: 288 HPTENKIASAGLDGDRTVRVW 308
              E  I SAG D +  ++ W
Sbjct: 589 WLNETTIVSAGQDSN--IKFW 607

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37  LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
           L SAS D T+ +W  ++    HR       F GH+  + D+AW         S +DD+ L
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 89  RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
            IWD R         T+  H+  V C++FNP S  I++ GS D+++ +W+++  K     
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
             +H   +  V ++  + +++ S   D    +WD  +    ++  D +D           
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 365
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
                                + L I+ GHT K     S FS   N  +I+ S SEDN +
Sbjct: 366 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 403
Query: 262 YVWDLQQ 268
            VW + +
Sbjct: 404 QVWQMAE 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37  LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
           L SAS D T+ +W  ++    HR       F GH+  + D+AW         S +DD+ L
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 89  RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
            IWD R         T+  H+  V C++FNP S  I++ GS D+++ +W+++  K     
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
             +H   +  V ++  + +++ S   D    +WD  +    ++  D +D           
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 367
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
                                + L I+ GHT K     S FS   N  +I+ S SEDN +
Sbjct: 368 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 405
Query: 262 YVWDLQQ 268
            VW + +
Sbjct: 406 QVWQMAE 412

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)
Query: 37  LASASLDKTVIIWSASSLALVHR-------FVGHSEGISDLAWS-SDSHYICSASDDRTL 88
           L SAS D T+ +W  ++    HR       F GH+  + D+AW         S +DD+ L
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 89  RIWDARTPFDCLK--TLRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCT-RV 144
            IWD R         T+  H+  V C++FNP S  I++ GS D+++ +W+++  K     
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 145 IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203
             +H   +  V ++  + +++ S   D    +WD  +    ++  D +D           
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------- 369
Query: 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT-NGKYIV-SGSEDNCV 261
                                + L I+ GHT K     S FS   N  +I+ S SEDN +
Sbjct: 370 ------------------GPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIM 407
Query: 262 YVWDLQQ 268
            VW + +
Sbjct: 408 QVWQMAE 414

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 92  DARTPFDCLKTLRGHSDFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTGKCT--RVIR 146
           D   P   ++      D + C++F+P +   N +++GS+   +R WEV+    T  +  +
Sbjct: 24  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206
            H+ PV  V ++ DGS + + S D T K+WD      ++    D          +PN   
Sbjct: 84  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 207 ILVGTLDSTLKLWN 220
           ++ G+ D TLK W+
Sbjct: 144 VMTGSWDKTLKFWD 157

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           + H   +  + F P    ++S S D  ++IW VK G   R +  H   VT +     G  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDP------------------AVSFAK-----F 200
           ++S S DGT ++W+ G G  + T    ++P                   +S +K     F
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 201 SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY---CITSTFSVTNGKYIVSGSE 257
              GK+++ G +   + + N     F K  T     K+   C + T    N  YI +G E
Sbjct: 256 GTYGKYVIAGHVSGVITVHNV----FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311
Query: 258 DNCVYVWDLQ 267
           +  +  WDL+
Sbjct: 312 NGMLAQWDLR 321

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 59  RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVF 111
           R  GH +    L+W+S+ S ++ SASDD T+ +WD           D      GHS  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
            V ++    +L  S + D+ + IW+ +   T K + ++ AH+  V  + FN     I++ 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-- 222
           GS D T  +WD       L T    KD  +    +SP+ + IL  +  D  L +W+ S  
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKD-EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 223 ------------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQ 268
                         + L I+ GHT K     S FS    +   I S SEDN + +W + +
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163
           + H   +  + F P    ++S S D  ++IW VK G   R +  H   VT +     G  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDP------------------AVSFAK-----F 200
           ++S S DGT ++W+ G G  + T    ++P                   +S +K     F
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 201 SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY---CITSTFSVTNGKYIVSGSE 257
              GK+++ G +   + + N     F K  T     K+   C + T    N  YI +G E
Sbjct: 253 GTYGKYVIAGHVSGVITVHNV----FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 308
Query: 258 DNCVYVWDLQ 267
           +  +  WDL+
Sbjct: 309 NGMLAQWDLR 318

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 35/236 (14%)
Query: 59  RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVF 111
           R  GH +    L+W+S+ S ++ SASDD T+ +WD           D      GHS  V 
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
            V ++    +L  S + D+ + IW+ +   T K + ++ AH+  V  + FN     I++ 
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-- 222
           GS D T  +WD       L T    KD  +    +SP+ + IL  +  D  L +W+ S  
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKD-EIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 223 ------------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVW 264
                         + L I+ GHT K     S FS    +   I S SEDN   +W
Sbjct: 353 GEEQSAEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 59  RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWD-ARTP-----FDCLKTLRGHSDFVF 111
           R  GH +    L+W+ + S ++ SASDD T+ +WD +  P      D      GH+  V 
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 112 CVNFN-PQSNLIVSGSFDESIRIWEVK---TGKCTRVIRAHSMPVTSVHFNRDGSLIVS- 166
            V+++    +L  S + D+ + IW+ +   T K +  + AH+  V  + FN     I++ 
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS--- 222
           GS D T  +WD           +     +   ++SP+ + IL  +  D  L +W+ S   
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 223 -----------AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQ 268
                        + L I+ GHT K     S FS    +   I S SEDN + VW + +
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 35/251 (13%)
Query: 57  VHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDARTPFDCLKT--LRGHSDFVFCV 113
           VHR+      +  + W   D+    S+S D+TL++WD  T    L+T  +    + V+  
Sbjct: 97  VHRY-----SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----LQTADVFNFEETVYSH 147
Query: 114 NFNPQSN---LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN-RDGSLIVSGSH 169
           + +P S    L+  G+    +++ ++K+G C+ +++ H   + +V ++ R   ++ + S 
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 170 DGTCKIWDAGEGA-CLKTLID---DKDPAVSFAKFSPNGK------------FILVGTLD 213
           D   K+WD    + CL TL      K  AV  A  + NGK             + VGT D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-D 266
Query: 214 STLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM 271
           + ++LWN S G+   +  G    N K  +  T S       V     + + V+ +     
Sbjct: 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326
Query: 272 IQKLDGHTDSV 282
           I  L GH  +V
Sbjct: 327 ITMLKGHYKTV 337

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 90  IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS 149
           I + R PF    +    ++ V C+ ++   N IV+G  +  +R+W  KTG    V+  H 
Sbjct: 91  IAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR 149
Query: 150 MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV 209
            P+ SV +N+DG+ I+S   +    +W+   G  ++                    F L 
Sbjct: 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ-------------------HFELK 190
Query: 210 GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269
            T  S++   N+S    L +                V + K+++ G +   ++V+ + +K
Sbjct: 191 ETGGSSINAENHSGDGSLGV------------DVEWVDDDKFVIPGPK-GAIFVYQITEK 237
Query: 270 TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           T   KL GH   +  +  + T   + SA  DG  T+R+W
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDG--TLRIW 274

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 50/322 (15%)
Query: 18  LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-- 75
           LT H R ++ VK++ +G LL S S D +  +W + +   +    GH+  I    WS D  
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI----WSIDVD 83
Query: 76  --SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE---- 129
             + Y  + S D ++++WD      C+ T +     V  V F+P  N  ++   D     
Sbjct: 84  CFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPVP-VKRVEFSPCGNYFLA-ILDNVMKN 140
Query: 130 --SIRIWEVKTGKCT-RVIRAHSMPVTSV--HFNRD----------GSLIVSGSHDGTCK 174
             SI I+E++    T  + +    P+  +  H   D          G  I++G  DG   
Sbjct: 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
            +D          ID  + ++S  +FSP+  + +  + D+   L + S  + LK Y    
Sbjct: 201 KYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY---- 256
Query: 235 NKKYCITSTFSVTNGKYIV---SGSEDNCVYVWDLQQ------------KTMIQKLDGHT 279
            +  C  +T  +T  K  +    G E   V      +            +  I ++ GH 
Sbjct: 257 -ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 280 DSVISVTCHPTENKIASAGLDG 301
             + +V   P     AS G DG
Sbjct: 316 GPLNTVAISPQGTSYASGGEDG 337

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 7/179 (3%)
Query: 87  TLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI 145
           TL IWD   P   +K  L   +   + +  +P S +  S   D +I +W++      R  
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 146 RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK 205
           + H+   + +  + DG+ + +G  D T + WD  EG  L+    D    +    + P G+
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGE 237
Query: 206 FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
           ++ VG   S +++ + +     +++   +    C+ S      GK+ VS  +DN +  W
Sbjct: 238 WLAVGMESSNVEVLHVNKPDKYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 152 VTSVHFNRDGSLIVSGSHDGTCKIWD-AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210
           + S     DG  ++ G    T  IWD A     +K  +    PA      SP+ K     
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 211 TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT 270
             D  + +W+      ++ + GHT+   CI  +    +G  + +G  DN V  WDL++  
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---NDGTKLWTGGLDNTVRSWDLREGR 216
Query: 271 MIQKLDGHTDSVISVTCHPTENKIA 295
            +Q+ D  T  + S+   PT   +A
Sbjct: 217 QLQQHD-FTSQIFSLGYCPTGEWLA 240

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 45/263 (17%)
Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
            H+E I D         + + S D+T++I++        + TL GH   V+ V++ +P+ 
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
             ++ S S+D  + IW+ + G+ +++     HS  V SV +  +  G +++  S DG   
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
           + +  E G     +ID     V+ A ++P        T++   +               H
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------H 164
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
              K            +  V+G  DN V +W    D Q   +   L+GH+D V  V   P
Sbjct: 165 NGTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 TE-NKIASAGLDGDRTVRVWVQD 311
           T   +   A +  DRT  +W QD
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQD 237

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 45/263 (17%)
Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
            H+E I D         + + S D+T++I++        + TL GH   V+ V++ +P+ 
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
             ++ S S+D  + IW+ + G+ +++     HS  V SV +  +  G L++  S DG   
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
           + +  E G     +ID     V+ A ++P        T++                  G 
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEED----------------GE 163
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
            N              +  V+G  DN V +W    D Q   +   L+GH+D V  V   P
Sbjct: 164 HN---------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 TE-NKIASAGLDGDRTVRVWVQD 311
           T   +   A +  DRT  +W QD
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQD 237

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 49/265 (18%)
Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
            H+E I D         + + S D+T++I++        + TL GH   V+ V++ +P+ 
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
             ++ S S+D  + IW+ + G+ +++     HS  V SV +  +  G L++  S DG   
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
           + +  E G     +ID     V+ A ++P        T++   +               H
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------H 164
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
              K            +  V+G  DN V +W    D Q   +   L+GH+D V  V   P
Sbjct: 165 NGTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 290 T---ENKIASAGLDGDRTVRVWVQD 311
           T    + +AS  +  DRT  +W QD
Sbjct: 215 TVLLRSYLAS--VSQDRTCIIWTQD 237

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 49/265 (18%)
Query: 62  GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ- 118
            H+E I D         + + S D+T++I++        + TL GH   V+ V++ +P+ 
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCK 174
             ++ S S+D  + IW+ + G+ +++     HS  V SV +  +  G L++  S DG   
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 175 IWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
           + +  E G     +ID     V+ A ++P        T++                  G 
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEED----------------GE 165
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHP 289
            N              +  V+G  DN V +W    D Q   +   L+GH+D V  V   P
Sbjct: 166 HN---------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 290 T---ENKIASAGLDGDRTVRVWVQD 311
           T    + +AS  +  DRT  +W QD
Sbjct: 217 TVLLRSYLAS--VSQDRTCIIWTQD 239

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 39/301 (12%)
Query: 18  LTAH-SRAVSCVKFS--NDGTLLASASLDKTVIIW--------SASSLALVHRFVGHSEG 66
            T H S  V+ VKFS       L S      VI+W        ++  + +   F   +  
Sbjct: 59  FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118
Query: 67  ISDLAWSSDSHYICSASDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFN---PQS 119
           ISD++W  +   +C   + R        WD+    + L  + GHS  +   +     P  
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMR 175
Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP---VTSVHFNRD-GSLIVSGSHDGTCKI 175
           ++ V    D S+  ++    K +   R H      V  V F+ D G  +++   D     
Sbjct: 176 SMTVGD--DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 176 WDAGEGACLKTLIDDKDPAVS--FA-KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
           +D   G  LK + DD++P     FA  +  + KF  VG  D+T+++W+ +  K ++ +T 
Sbjct: 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTL 292
Query: 233 HT----NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
                 N++  + +T    NG+ I+S S D  +  ++L    +++ + GH   + ++T +
Sbjct: 293 DKQQLGNQQVGVVAT---GNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348
Query: 289 P 289
           P
Sbjct: 349 P 349

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 45/262 (17%)
Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGHSDFVFCVNF-NPQ-S 119
           H+E I D           + S D+T++I++        + TL GH   V+ V++ +P+  
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHF--NRDGSLIVSGSHDGTCKI 175
            ++ S S+D  + IW+ + G+ +++     HS  V SV +  +  G  ++  S DG   +
Sbjct: 68  TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 176 WDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
            +  E G     +ID     V+ A ++P        T++   +               H 
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAP-------ATIEEDGE---------------HN 165
Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVW----DLQQKTMIQKLDGHTDSVISVTCHPT 290
             K            +  V+G  DN V +W    D Q   +   L+GH+D V  V   PT
Sbjct: 166 GTK----------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 291 E-NKIASAGLDGDRTVRVWVQD 311
              +   A +  DRT  +W QD
Sbjct: 216 VLLRSYXASVSQDRTCIIWTQD 237

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 29/296 (9%)
Query: 18  LTAH-SRAVSCVKFS--NDGTLLASASLDKTVIIW--------SASSLALVHRFVGHSEG 66
            T H S  V+ VKFS       L S      VI+W        ++  + +   F   +  
Sbjct: 59  FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118
Query: 67  ISDLAWSSDSHYICSASDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
           ISD++W  +   +C   + R        WD+    + L  + GHS  +   +   QS   
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLK-QSRPX 174
Query: 123 VSGSF--DESIRIWEVKTGKCTRVIRAHSMP---VTSVHFNRD-GSLIVSGSHDGTCKIW 176
            S +   D S+  ++    K +   R H      V  V F+ D G  +++   D     +
Sbjct: 175 RSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234
Query: 177 DAGEGACLKTLIDDKDPAVS--FA-KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
           D   G  LK + DD++P     FA  +  + KF  VG  D+T+++W+ +  K ++ +T  
Sbjct: 235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLD 293
Query: 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289
             +          T    I+S S D  +  ++L    +++ + GH   + ++T +P
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 105 GHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSV--HFNRDG 161
           GH+  V  + + P + N+I SGS D ++ +WE+  G     +R    PV ++  H  R G
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE---PVITLEGHTKRVG 135
Query: 162 ---------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA-KFSPNGKFILVGT 211
                    ++++S   D    +WD G GA + TL  D  P   ++  +S +G  I    
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWD--- 265
            D  +++     G  +            + + F V+ GK + +G     +  V +WD   
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMSERQVALWDTKH 254
Query: 266 LQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
           L++   +Q+LD  +  V+     P  N +   G  GD ++R
Sbjct: 255 LEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCG-KGDSSIR 293

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 30/234 (12%)
Query: 92  DARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSM 150
           D   P  C     GH+  V  + + P + N+I SGS D ++ +WE+  G     +R    
Sbjct: 71  DKNVPLVC-----GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE--- 122
Query: 151 PVTSV--HFNRDG---------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA- 198
           PV ++  H  R G         ++++S   D    +WD G GA + TL  D  P   ++ 
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 199 KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG--- 255
            +S +G  I     D  +++     G  +            + + F V+ GK + +G   
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSR 241
Query: 256 SEDNCVYVWD---LQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             +  V +WD   L++   +Q+LD  +  V+     P  N +   G  GD ++R
Sbjct: 242 MSERQVALWDTKHLEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCG-KGDSSIR 293

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36  LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
           LLA A     + I +  ++  +  +VGH   I++L +   D + + S S D  LR+W+ +
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 95  TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
           T  D L  +     GH D V   +++     I+S   D S+++W + + +    I+
Sbjct: 183 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36  LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
           LLA A     + I +  ++  +  +VGH   I++L +   D + + S S D  LR+W+ +
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 95  TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
           T  D L  +     GH D V   +++     I+S   D S+++W + + +    I+
Sbjct: 147 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 71/308 (23%)
Query: 36  LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
           LLA A     + I +  ++  +  +VGH   I++L +   D + + S S D  LR+W+ +
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 95  TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-- 148
           T  D L  +     GH D V   +++     I+S   D S+++W + + +    I+    
Sbjct: 146 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Query: 149 ------SMPVTS--VHF----NRD------------GSLIVSGSHDGTCKIWDAGEGACL 184
                 + P  S  +HF     RD            G LI+S S +     W  G+   +
Sbjct: 204 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK---M 260
Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLD-STLKLWNYSAGKFLKIYTGHTNKKYCITST 243
           +  ID   P+ S           ++G  D S   +W      +++  T    K   +   
Sbjct: 261 EDDIDKIKPSES--------NVTILGRFDYSQCDIW------YMRFSTDFWQKMLAL--- 303
Query: 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303
                      G++   +YVWDL+ +      D H     ++T H     I       D 
Sbjct: 304 -----------GNQVGKLYVWDLEVE------DPHKAKCTTLTHHKCGAAIRQTSFSRDS 346
Query: 304 TVRVWVQD 311
           ++ + V D
Sbjct: 347 SILIAVCD 354

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36  LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
           LLA A     + I +  ++  +  +VGH   I++L +   D + + S S D  LR+W+ +
Sbjct: 82  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 95  TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
           T  D L  +     GH D V   +++     I+S   D S+++W + + +    I+
Sbjct: 142 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 36  LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW-SSDSHYICSASDDRTLRIWDAR 94
           LLA A     + I +  ++  +  +VGH   I++L +   D + + S S D  LR+W+ +
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 95  TPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
           T  D L  +     GH D V   +++     I+S   D S+++W + + +    I+
Sbjct: 146 T--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 127/318 (39%), Gaps = 77/318 (24%)
Query: 20  AHSRAVSCVKFSNDGTLLASASLDKTVIIWSA---------SSLALVHRFVGHSEGISDL 70
           +H +    V  +  GT+ A+ S D ++ +WS          +SL +  +F       +DL
Sbjct: 21  SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF-------NDL 73
Query: 71  AWSSDSHYICSASDDRTLRIW---DARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGS 126
            WS ++  I  A D+ +L ++   +A    + +     HS  V  V FN  Q N++ SG 
Sbjct: 74  DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 127 FDESIRIWEVKTGKCTR-------VIRAHSM----PVTSVHFNRD-GSLIVSGSHDGTCK 174
            +  I IW++   KCT        +    SM     V S+ +N+    +  S        
Sbjct: 134 NNGEIFIWDMN--KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS 191
Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
           IWD          +  K   +  +  SPN          S +K       + L +   H 
Sbjct: 192 IWD----------LKAKKEVIHLSYTSPN----------SGIK-------QQLSVVEWHP 224
Query: 235 -NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLD-GHTDSVISVT-CHPT 290
            N     T+T S            D  + +WDL+   T +Q L+ GH   ++S+  CH  
Sbjct: 225 KNSTRVATATGS----------DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 291 ENKIASAGLDGDRTVRVW 308
           E+ + S+G   D TV +W
Sbjct: 275 EHLLLSSGR--DNTVLLW 290

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC------ITSTFSV-TNGKYIVSGSE 257
           + ILV +    ++LW     + L +       K+C      I ST SV ++G   VSGS+
Sbjct: 94  RGILVASDSGAVELWELDENETLIV------SKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147
Query: 258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
           D C+ VWDL Q+ ++     H   V  V   P ++ +
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYV 263
           K ILV +    ++LW     + L +      +   I  T SV ++G   VSG +D  V V
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKI-ASAGLDG 301
           WDL QK +++  + H+  V  V   P ++ I  S G DG
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 38/284 (13%)
Query: 25  VSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGISDLAWSSDSHYICSA 82
           +SC  ++ D T +A    +  V I+  S +    VH    H+  ++ + W+ DS+ I + 
Sbjct: 11  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 83  SDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK 140
             DR   +W    RT    L  LR +     CV + P       GS    I I   +   
Sbjct: 71  GTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 141 ----CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS 196
               C  + +     V S+ ++ +  L+ +GS D  C+I+     A +K + +   P   
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEERPAP--- 182
Query: 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256
               +P G  +  G L                ++   ++  +     FS  NG  +   S
Sbjct: 183 ----TPWGSKMPFGEL----------------MFESSSSCGWVHGVCFS-ANGSRVAWVS 221
Query: 257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
            D+ V + D  +K  +  L   T  +++VT   TE+ + +AG D
Sbjct: 222 HDSTVCLADADKKMAVATLASETLPLLAVT-FITESSLVAAGHD 264

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 38/284 (13%)
Query: 25  VSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGISDLAWSSDSHYICSA 82
           +SC  ++ D T +A    +  V I+  S +    VH    H+  ++ + W+ DS+ I + 
Sbjct: 11  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 83  SDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK 140
             DR   +W    RT    L  LR +     CV + P       GS    I I   +   
Sbjct: 71  GTDRNAYVWTLKGRTWKPTLVILRINRA-ARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 141 ----CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS 196
               C  + +     V S+ ++ +  L+ +GS D  C+I+     A +K + +   P   
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEERPAP--- 182
Query: 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256
               +P G  +  G L                ++   ++  +     FS  NG  +   S
Sbjct: 183 ----TPWGSKMPFGEL----------------MFESSSSCGWVHGVCFS-ANGSRVAWVS 221
Query: 257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300
            D+ V + D  +K  +  L   T  +++VT   TE+ + +AG D
Sbjct: 222 HDSTVCLADADKKMAVATLASETLPLLAVT-FITESSLVAAGHD 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.44
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.02
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.01
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.97
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.95
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.89
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.86
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.77
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.75
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.44
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.18
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.11
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.05
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.55
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.5
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.46
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.41
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.39
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.34
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.27
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.15
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.92
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.57
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.54
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.42
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.41
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.29
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.81
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.21
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.98
3ott_A	758	Two-component system sensor histidine kinase; beta	93.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.25
3ott_A	758	Two-component system sensor histidine kinase; beta	92.13
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.13
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.67
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.35
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.02
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	86.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.09
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	85.34
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.53

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-54  Score=358.71  Aligned_cols=300  Identities=65%  Similarity=1.094  Sum_probs=277.5

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      +....++.+|.++|++++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            45567789999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      |+++. +.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++....+..|..++.+++|+|+++++++++.|+
T Consensus        93 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           93 DVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             ETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            99875 56778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .|++||+++++.+..+.......+..++|+|++++|++++.|+.|++||+++++.+..+.+|.....++...+..+++.+
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            99999999988887776666677888999999999999999999999999999998888888766555555666678899


Q ss_pred             EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      |++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++.+++++.++|++|++|+.|+
T Consensus       252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d~  312 (312)
T 4ery_A          252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC  312 (312)
T ss_dssp             EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECCC
T ss_pred             EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCCC
Confidence            9999999999999999999999999999999999999999999999988889999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-51  Score=343.55  Aligned_cols=294  Identities=27%  Similarity=0.460  Sum_probs=261.3

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      +.+..+++.+|.+.|++++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++++.|+.+++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           91 WDARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        91 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      |++.+..   .....+.+|.+.+.++.|++++ .+++++.|+.|++||+++++....+..|...|.+++|+|+++++++|
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9987642   3455678899999999999876 58899999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +.|+.|++||++++.....+.. +...+..++|+|++++|++++.|+.|++||++.++.+..+... .....+......+
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~  280 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-NIICGITSVSFSK  280 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEEEEECT
T ss_pred             eCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC-CcccceEEEEECC
Confidence            9999999999999887776644 4566888999999999999999999999999988877665432 2222244445568


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ++++|++|+.||.|++||+.+...+..+.+|...|.+++|+|++.+|+++|.|  ++|+||+
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D--~~i~iWd  340 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD--SFLKIWN  340 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT--SCEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC--ccEEecC
Confidence            89999999999999999999988889999999999999999999999999965  5899996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.2e-52  Score=356.15  Aligned_cols=289  Identities=31%  Similarity=0.580  Sum_probs=264.8

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999989999999999999999999999999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      +. +++..+.+|...|.+++|+|+++.+++++.|++|++||+++++++..+..|...+.++.++|++.++++|+.|+.|+
T Consensus       181 ~~-~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          181 GF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             SS-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CC-ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            74 56778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCC--------------------CCEEEEEecCCeEEEEEcCCCcEEEEEEccC
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTGHT  234 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  234 (312)
                      +||++++.....+.. +...+..+.|+|+                    +.+|++|+.|+.|++||++++..+..+.+|.
T Consensus       260 vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          260 VWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            999999887766643 4567888899986                    6789999999999999999999999998888


Q ss_pred             CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ....++   ...+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|+++|.|  ++|++|+.
T Consensus       339 ~~v~~v---~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D--~~i~vW~~  409 (410)
T 1vyh_C          339 NWVRGV---LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--QTVKVWEC  409 (410)
T ss_dssp             SCEEEE---EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--SEEEEEC-
T ss_pred             CcEEEE---EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC--CcEEEEeC
Confidence            765443   345789999999999999999999998899999999999999999999999999955  69999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-51  Score=337.29  Aligned_cols=292  Identities=21%  Similarity=0.366  Sum_probs=257.2

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      +...+++.+|.+.|++++|+|++++|++++.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEcc-CCCEEEEeeC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNR-DGSLIVSGSH  169 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  169 (312)
                      |+.++ +.+..+.+|.+.|.+++|+|+++++++++.|++|++||++++ .....+..|...|.+++|+| ++.+|++|+.
T Consensus        83 d~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           83 NYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             ETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             ECCCC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            99875 557788899999999999999999999999999999999887 45567788999999999999 6789999999


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      |+.|++||++++.....+...+...+..+.+.|  ++.+|++++.|+.|++||+++++.+..+.+|......   ....+
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~---~~~~p  238 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHP  238 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE---EEECS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE---EEECC
Confidence            999999999887766665555556677777876  7789999999999999999999999999998876443   33457


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc--eEEEeeecCCeeEEEEee
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN--KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~~~~~dgd~~v~iw~~  310 (312)
                      ++.+|++|+.||.|++||+.+.+....+..|...+.+++++|++.  ++++++.|   .+.+|.+
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~---g~~~~~~  300 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN---GFTVLSL  300 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT---EEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC---ceEEEEe
Confidence            889999999999999999999999999999999999999999875  36665533   4666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-50  Score=335.40  Aligned_cols=290  Identities=24%  Similarity=0.410  Sum_probs=258.1

Q ss_pred             ceeeecccccceEEEEECCC----CCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           14 HFKTLTAHSRAVSCVKFSND----GTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      .++.+.+|.+.|.+++|+|+    +.+|+||+.|+.|++|+.....  ....+.+|...|.+++|++++.++++++.|+.
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            34667899999999999985    5689999999999999987654  34567899999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      |++||+.++ +.+..+..|...+.+++|+|++++|++++.+|.|++||+++++....+..|...+.+++|+|++++|++|
T Consensus       104 i~lWd~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          104 IRLWDLENG-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEETTTT-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            999999875 5567777888889999999999999999999999999999999888888898999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +.|+.|++||+++++.+..+.. +...+..++|+|++++|++++.|+.|++||++.++....+.+|.....++   ...+
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~---~~sp  258 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV---AFCP  258 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE---EECT
T ss_pred             cCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE---EECC
Confidence            9999999999999988777644 45567788999999999999999999999999999988888887764443   3457


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++.+|++++.||.|++||+.+++.+..+.+|.+.|.+++|+|+++.|++++.|  ++|++|+.
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d--~~i~vwd~  319 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD--QEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--CCEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC--CeEEEEeC
Confidence            89999999999999999999999999999999999999999999999999955  58999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.7e-50  Score=336.45  Aligned_cols=293  Identities=22%  Similarity=0.420  Sum_probs=259.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +..+++.+|.+.|++++|+|++++|+||+.||.|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45678899999999999999999999999999999999999988888889999999999999999999999999999999


Q ss_pred             CCCC-----ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc--CCCEEE
Q 021459           93 ARTP-----FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR--DGSLIV  165 (312)
Q Consensus        93 ~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~  165 (312)
                      +...     ......+.+|...|.+++|+|+++.+++++.|++|++||+++++.+..+..|...|.+++++|  ++++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            8542     123455678999999999999999999999999999999999999999999999999999987  568999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      +|+.|+.|++||+++++....+.. +...+..++|+|++.+|++++.|+.|++||++.++.+..+..+... ..+.....
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~-~~~~~~~~  292 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII-FGASSVDF  292 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-SCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc-cceeEEEE
Confidence            999999999999999988776643 4567888999999999999999999999999988877666543321 12333344


Q ss_pred             ccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      .+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|  ++|++|+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D--~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD--HTLRVWA  354 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT--SEEEEEC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC--CCEEecC
Confidence            5789999999999999999999988888999999999999999999999999955  6999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-50  Score=341.69  Aligned_cols=297  Identities=22%  Similarity=0.440  Sum_probs=254.5

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ....+++.+|.+.|++++|+|++++|++|+.|++|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++|
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCc------eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEe-----eecCcCeEEEEEcc
Q 021459           92 DARTPF------DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVI-----RAHSMPVTSVHFNR  159 (312)
Q Consensus        92 d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~  159 (312)
                      |+....      .....+.+|.+.+.++.|.|++ ..|++++.|++|++||+++++.+..+     ..|...+.++.|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            986421      2234577899999999999974 57999999999999999999888766     56888999999987


Q ss_pred             -CCCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459          160 -DGSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       160 -~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                       +++++++|+.|+.|++||++.. .....+. .+...+..++|+|++++|++++.|++|++||+++++.+..+..+....
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence             8899999999999999999843 4444443 455668888999999999999999999999999999888776543211


Q ss_pred             ----eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecc----cCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          238 ----YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL----DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       238 ----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                          ..+......+++++|++|+.||.|++||+...+....+    .+|.+.|.+++|+|++++|+++|.|  ++|++|+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D--~~i~iW~  372 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD--KNLKIWA  372 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT--SCEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC--CCEEEEe
Confidence                11223344578999999999999999999887776655    6899999999999999999999965  5999999


Q ss_pred             ec
Q 021459          310 QD  311 (312)
Q Consensus       310 ~~  311 (312)
                      +.
T Consensus       373 ~~  374 (380)
T 3iz6_a          373 FS  374 (380)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-48  Score=323.87  Aligned_cols=295  Identities=26%  Similarity=0.431  Sum_probs=242.1

Q ss_pred             ceeceeeeccccc-ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE---EeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459           11 PYRHFKTLTAHSR-AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH---RFVGHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        11 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      ++....++.+|.+ .|.+++|+|+|++||+|+.|+.|++|+..+.....   ...+|...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4567788999988 99999999999999999999999999988765432   2357999999999999999999999999


Q ss_pred             eEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe---EEEEeeecCcCeEEEEEccCCC
Q 021459           87 TLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK---CTRVIRAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        87 ~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~  162 (312)
                      .+++||+.... +.+..+.+|...|.+++|+|++++|++++.|++|++||++++.   +...+..|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999987643 4567788999999999999999999999999999999998763   4556778999999999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCCcee--eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC---------------c
Q 021459          163 LIVSGSHDGTCKIWDAGEGACL--KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG---------------K  225 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------------~  225 (312)
                      +|++++.|+.|++||.+++...  ..+ ..+...+..++|+|++++|++++.|++|++||....               +
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            9999999999999998876532  333 345667889999999999999999999999996432               1


Q ss_pred             EEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---------eecccCCccceEEEEEcCCCc-eE
Q 021459          226 FLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM---------IQKLDGHTDSVISVTCHPTEN-KI  294 (312)
Q Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~h~~~v~~l~~~p~~~-~l  294 (312)
                      .+..+.+ |....+.   ....+++..|++++.|+.|++|+......         .....+|...|++|+|+|++. .|
T Consensus       243 ~~~~~~~~h~~~v~~---v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          243 CICTLSGFHSRTIYD---IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEECSSCSSCEEE---EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             eeEEecCCCCCcEEE---EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence            2223333 3333333   33446788999999999999999864321         123468999999999999974 89


Q ss_pred             EEeeecCCeeEEEEeec
Q 021459          295 ASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       295 ~~~~~dgd~~v~iw~~~  311 (312)
                      +++|.|  ++|++|+..
T Consensus       320 aS~s~D--g~v~~W~~~  334 (345)
T 3fm0_A          320 ASCSDD--GEVAFWKYQ  334 (345)
T ss_dssp             EEEETT--SCEEEEEEC
T ss_pred             EEcCCC--CcEEEEEec
Confidence            999855  699999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-48  Score=327.47  Aligned_cols=287  Identities=21%  Similarity=0.306  Sum_probs=235.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeC------CCeEEEEeCCCcce----EEEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASL------DKTVIIWSASSLAL----VHRFVGHSEGISDLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~------d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v   88 (312)
                      ..|+..|++++|||||++|++|+.      |+.|++|+..++..    .....+|...|.+++|+|++.++ +++.||.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEE
Confidence            469999999999999999999997      78899998876543    33456788999999999998655 56789999


Q ss_pred             EEEeCCCCcee---eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EE
Q 021459           89 RIWDARTPFDC---LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LI  164 (312)
Q Consensus        89 ~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  164 (312)
                      ++||+.++...   .....+|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|++++|+|++. ++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99998765322   123457999999999999999999999999999999999999999999999999999999875 78


Q ss_pred             EEeeCCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          165 VSGSHDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      ++++.|+.|++||+++++....+. ......+..++|+|+ +.+|++|+.|+.|++||+++++.+..+.+|.....++  
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l--  275 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL--  275 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE--
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE--
Confidence            999999999999999887665443 234456788899997 4688899999999999999999888888887765544  


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC-CCceEEEeeecCCeeEEEEeec
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP-TENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+.+.++++|++|+.||.|++||+++++.+..+ +|.+.|++|+|+| ++.+|+++|.|  ++|++|++.
T Consensus       276 ~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D--g~v~iW~~~  342 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD--HKVLHHHLP  342 (357)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT--SCEEEEECC
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC--CeEEEEECC
Confidence            344444578999999999999999988776554 7999999999999 78899999965  599999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-47  Score=314.12  Aligned_cols=290  Identities=26%  Similarity=0.421  Sum_probs=247.1

Q ss_pred             eeceeeecccccceEEEEECCCC-CEEEEEeCCCeEEEEeCCC-----cceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      +....+|.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++|+.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            45567899999999999999965 8999999999999998764     33466788999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-----
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-----  160 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-----  160 (312)
                      +.|++||+.++ +.+..+.+|...|.+++|+|+++.+++++.|++|++||++. +++..+..|...+.++.+.|.     
T Consensus        87 ~~v~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCC-CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCC
Confidence            99999999885 56778889999999999999999999999999999999974 566778889999999999985     


Q ss_pred             -CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          161 -GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       161 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                       +..+++++.|+.|++||+++.+....+.. +...+..++|+|++++|++++.|+.|++||+.+++.+..+..+. .   
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~---  239 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-E---  239 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-C---
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-c---
Confidence             44899999999999999998877766654 45678889999999999999999999999999998888777543 2   


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc--------CCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD--------GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +......+++.+|++++.+ .+++|++.....+..+.        .|...+.+++|+|++++|++++.|  ++|++|++.
T Consensus       240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D--g~i~vWd~~  316 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD--NVIRVWQVM  316 (319)
T ss_dssp             EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT--SCEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC--ceEEEEEEe
Confidence            3333445788898888765 49999998765554433        345679999999999999999955  589999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.4e-48  Score=323.75  Aligned_cols=285  Identities=22%  Similarity=0.304  Sum_probs=231.8

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-----------LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ..|...|.+++|+|||++|++++ |+++++|+...           .........+...|.+++|+|++ .|++|+.||.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            45788899999999999999887 66777775211           11122234467789999999985 6779999999


Q ss_pred             EEEEeCCCCcee---eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-E
Q 021459           88 LRIWDARTPFDC---LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-L  163 (312)
Q Consensus        88 v~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  163 (312)
                      |++||+.++...   .....+|.+.|.+++|+|++++|++++.|++|++||+++++.+..+.+|...|.+++|+|++. +
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            999999875322   123458999999999999999999999999999999999999999999999999999999885 7


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEccc-CCCCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEE
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLID-DKDPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCIT  241 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  241 (312)
                      +++++.|+.|++||+++++....+.. .+...+..++|+|+ +++|++|+.|+.|++||+++++.+..+.+|.....++ 
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v-  263 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-  263 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE-
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE-
Confidence            89999999999999999887776543 23445777889985 5688999999999999999999999999988875544 


Q ss_pred             EEEEccCC-cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCce-EEEeeecCCeeEEEEeec
Q 021459          242 STFSVTNG-KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK-IASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       242 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~~~~~dgd~~v~iw~~~  311 (312)
                       .+. +++ .+|++|+.||.|++||+.+++.+ .+.+|.+.|.+|+|+|+++. |+++|.|  ++|++|+++
T Consensus       264 -~fs-p~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D--~~v~~w~v~  330 (344)
T 4gqb_B          264 -VFS-PHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWD--HQVVHHVVP  330 (344)
T ss_dssp             -EEC-SSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT--SCEEEEECC
T ss_pred             -EEc-cCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCC--CeEEEEECC
Confidence             333 555 68999999999999999887654 57899999999999999875 5677855  699999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.3e-47  Score=321.36  Aligned_cols=284  Identities=32%  Similarity=0.602  Sum_probs=241.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC------------------CEEEEEEccCCCeEEE
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSE------------------GISDLAWSSDSHYICS   81 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~   81 (312)
                      +|...|.+++|+|+|++||+|+ ++.+++|+..+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 68999999999888777665432                  3899999999999999


Q ss_pred             EcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-C
Q 021459           82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-D  160 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~  160 (312)
                      |+.|+.|++||+.+. +.+..+.+|...|.+++|+|+++.|++++.|++|++||++++++...+. +...+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence            999999999999875 5677788999999999999999999999999999999999998877665 556799999999 8


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcc------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---------
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLI------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---------  225 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------  225 (312)
                      ++++++|+.|+.|++||++++.....+.      ..+...+..++|+|++++|++++.|+.|++||+++..         
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            9999999999999999999887765542      2345678889999999999999999999999987632         


Q ss_pred             ---EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC------CCceEEE
Q 021459          226 ---FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP------TENKIAS  296 (312)
Q Consensus       226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p------~~~~l~~  296 (312)
                         ....+.+|.....+   ....+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|      +++.|++
T Consensus       299 ~~~~~~~~~~h~~~v~~---~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLS---VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             --CEEEEEECCSSCEEE---EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CCcceEEEecccCcEEE---EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence               33455666655333   33457789999999999999999999999999999999999999876      6789999


Q ss_pred             eeecCCeeEEEEeec
Q 021459          297 AGLDGDRTVRVWVQD  311 (312)
Q Consensus       297 ~~~dgd~~v~iw~~~  311 (312)
                      +|.  |++|+||++.
T Consensus       376 gs~--Dg~i~iW~~~  388 (393)
T 1erj_A          376 GSG--DCKARIWKYK  388 (393)
T ss_dssp             EET--TSEEEEEEEE
T ss_pred             ECC--CCcEEECccc
Confidence            995  4699999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-47  Score=314.15  Aligned_cols=291  Identities=23%  Similarity=0.399  Sum_probs=229.0

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEe-ee-ccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--ALVHRF-VG-HSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      .+..+++.+|.++|.+++|+|+  +|++|+.|+.|++|++...  .....+ .+ |...|.+++|+|++++|++++.|+.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            4556788999999999999998  9999999999999999874  344444 34 9999999999999999999999999


Q ss_pred             EEEEeCCCC------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC----CeEEEEeeecCcCeEEEEE
Q 021459           88 LRIWDARTP------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT----GKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus        88 v~~wd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~  157 (312)
                      |++||+...      .+.+..+.+|.+.|.+++|+|++++|++++.|++|++||++.    .+++..+..|...|.+++|
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            999998532      234567789999999999999999999999999999999943    2456778889999999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCC--ceeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCC--------c
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAG--------K  225 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~--------~  225 (312)
                      +|++.+|++++.|+.|++||..++  +.+..+ ..+...+..+.|+|+  +..|++++.|++|++||+..+        .
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            999999999999999999998765  344444 345567888999998  678999999999999998654        2


Q ss_pred             EEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh--ee-ecccCCcc-ceEEEEEcC--CCceEEEee
Q 021459          226 FLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT--MI-QKLDGHTD-SVISVTCHP--TENKIASAG  298 (312)
Q Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~-~~~~~h~~-~v~~l~~~p--~~~~l~~~~  298 (312)
                      ....+.. |.....++  .+. + +.+|++++.||.|++||..+++  .. ....+|.. .|.+++|+|  +++.|+++|
T Consensus       241 ~~~~~~~~h~~~v~~v--~~s-~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          241 CEAILPDVHKRQVYNV--AWG-F-NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             EEEECCSCCSSCEEEE--EEC-T-TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             EeeecccccccceEEE--EEc-C-CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence            2333333 55444443  233 3 4589999999999999987653  23 23467877 899999999  688999999


Q ss_pred             ecCCeeEEEEeec
Q 021459          299 LDGDRTVRVWVQD  311 (312)
Q Consensus       299 ~dgd~~v~iw~~~  311 (312)
                      .|  ++|+||++.
T Consensus       317 ~D--g~v~~W~~~  327 (330)
T 2hes_X          317 DD--GIVNFWSLE  327 (330)
T ss_dssp             TT--SEEEEEEC-
T ss_pred             CC--CcEEEEEec
Confidence            55  699999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-46  Score=336.32  Aligned_cols=291  Identities=24%  Similarity=0.338  Sum_probs=251.2

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccCCEEEEEEccCCCeEEEEcCC----C
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSEGISDLAWSSDSHYICSASDD----R   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~   86 (312)
                      ....++.+|.+.|++++|+|+|++||+|+.|++|+|||..++  .....+.+|...|.+++|+|++++|++++.+    +
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            345678899999999999999999999999999999998654  3455678899999999999999999988765    4


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      .|++||...   ....+.+|.+.|.+++|+|++. .|++++.|++|++||..+++....+..|...|.+++|+|++++|+
T Consensus       130 ~v~~wd~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          130 HVFLFDTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             EEEETTTCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEeeCCC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence            788888543   3556789999999999999986 699999999999999999998889999999999999999999999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEccc------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-e
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLID------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-Y  238 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~  238 (312)
                      +++.|+.|++||..+++....+..      .+...+..++|+|++++|++++.|++|++||+.+++.+..+..+.... .
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            999999999999998887766632      456678899999999999999999999999999998887776442221 1


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .....+   ++..+++++.||.|++||...+.....+.+|...|.+++|+|++++|++++.|  ++|++|++.
T Consensus       287 ~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D--~~v~~Wd~~  354 (611)
T 1nr0_A          287 QLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE--GHINSWDIS  354 (611)
T ss_dssp             EEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEETT
T ss_pred             eEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECC
Confidence            222222   57889999999999999998888788889999999999999999999999955  599999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-46  Score=336.36  Aligned_cols=290  Identities=23%  Similarity=0.378  Sum_probs=241.5

Q ss_pred             eeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..++.+|.+.|++++|+|++. .|++|+.|++|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            346789999999999999987 6999999999999999999888899999999999999999999999999999999998


Q ss_pred             CCCceeeeeee-------cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE----------------------
Q 021459           94 RTPFDCLKTLR-------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV----------------------  144 (312)
Q Consensus        94 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----------------------  144 (312)
                      .++. .+..+.       +|.+.|.+++|+|++++|++++.|++|++||+++++....                      
T Consensus       220 ~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          220 VDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             TTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             CCCc-EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            7753 344442       7999999999999999999999999999999988765432                      


Q ss_pred             ---------------------eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc--------------
Q 021459          145 ---------------------IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID--------------  189 (312)
Q Consensus       145 ---------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------  189 (312)
                                           +.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..              
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                                 346888999999999999999999999999999876643221100              


Q ss_pred             -------------------------------------------------------------------CCCCcEEEEEECC
Q 021459          190 -------------------------------------------------------------------DKDPAVSFAKFSP  202 (312)
Q Consensus       190 -------------------------------------------------------------------~~~~~~~~~~~~~  202 (312)
                                                                                         .+...+..++|+|
T Consensus       379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp  458 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN  458 (611)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence                                                                               0012245678999


Q ss_pred             CCCEEEEEecCCeEEEEEcCCCcEE--EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeec--ccC
Q 021459          203 NGKFILVGTLDSTLKLWNYSAGKFL--KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQK--LDG  277 (312)
Q Consensus       203 ~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~  277 (312)
                      +|++|++|+.|+.|++||+.++...  .. ..|.....+   ..+.+++++|++++.|+.|++||+.+ .+....  +.+
T Consensus       459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~---v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~  534 (611)
T 1nr0_A          459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS---VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  534 (611)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE---EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE---EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence            9999999999999999999876542  23 456555333   34458899999999999999999987 444443  345


Q ss_pred             CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          278 HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       278 h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |...|.+++|+|++++|+++|.|  ++|++|+++
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D--~~v~lW~~~  566 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLD--NSVIVWNMN  566 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT--SCEEEEETT
T ss_pred             cccceeEEEECCCCCEEEEEECC--CcEEEEECC
Confidence            99999999999999999999955  699999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-45  Score=309.00  Aligned_cols=289  Identities=25%  Similarity=0.369  Sum_probs=234.6

Q ss_pred             eeceeeecccccceEEEEE-----CC-CCCEEEEEeCCCeEEEEeCCC-------cceEEEeeeccCCEEEEEEccCCCe
Q 021459           12 YRHFKTLTAHSRAVSCVKF-----SN-DGTLLASASLDKTVIIWSASS-------LALVHRFVGHSEGISDLAWSSDSHY   78 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~   78 (312)
                      +....++.+|.+.|++++|     +| ++++|++|+.|++|++|++..       +.....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4566789999999999999     77 999999999999999999864       3455678899999999999999999


Q ss_pred             EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---ecCcCeEEE
Q 021459           79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---AHSMPVTSV  155 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~  155 (312)
                      |++++.|+.|++||++++ +.+..+.+|...|.+++|+|+++.+++++.|++|++||+..... ....   .|...+.++
T Consensus        91 l~s~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEEETTSEEEEEETTSS-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeeee
Confidence            999999999999999875 55777889999999999999999999999999999999985433 3322   678889999


Q ss_pred             EEccCC----------CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-
Q 021459          156 HFNRDG----------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-  224 (312)
Q Consensus       156 ~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-  224 (312)
                      +|+|++          .++++++.|+.|++||.. .+....+. .+...+..++|+|++++|++++.|+.|++||+... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            999987          789999999999999943 44444443 45567888999999999999999999999999543 


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee--cc-----------cCCccceEEEEEcCCC
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ--KL-----------DGHTDSVISVTCHPTE  291 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-----------~~h~~~v~~l~~~p~~  291 (312)
                      .....+. +...   +......+++.++++ +.|+.|++||+.+.+...  .+           .+|...|.+++|+|++
T Consensus       247 ~~~~~~~-~~~~---v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          247 YPQREFD-AGST---INQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             SCSEEEE-CSSC---EEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred             ccceeec-CCCc---EEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence            3333332 2222   233334567777765 467789999997654432  22           2688899999999999


Q ss_pred             ceEEEeeecCCeeEEEEeec
Q 021459          292 NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       292 ~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++|++++.|  ++|++|+++
T Consensus       322 ~~l~sg~~D--g~v~~w~~~  339 (343)
T 2xzm_R          322 KKLFAGFTD--GVIRTFSFE  339 (343)
T ss_dssp             CCEEEEETT--SEEEEEEEE
T ss_pred             CeEEEecCC--ceEEEEEEE
Confidence            999999955  699999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-44  Score=302.15  Aligned_cols=292  Identities=22%  Similarity=0.339  Sum_probs=252.7

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      .......+.+|.+.|++++|+|++++|++++.||.|++|+..+++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEEEEcCCCe-----------EEEEeeecCc--Ce
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRIWEVKTGK-----------CTRVIRAHSM--PV  152 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~-----------~~~~~~~~~~--~v  152 (312)
                      ||+.+. +.+..+. +...+.+++|+|+++.+++++.+     +.|++||+..+.           ....+..|..  .+
T Consensus       101 wd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          101 WDVSNG-QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EETTTC-CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EECCCC-cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            999875 4455555 78899999999999999999998     999999997653           2233444554  89


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEeCCC-CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          153 TSVHFNRDGSLIVSGSHDGTCKIWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .+++|+|+++++++++.||.|++||+++ ......+. .+...+..+.|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            9999999999999999999999999998 45555443 455678889999999999999999999999999999888776


Q ss_pred             ccCCceeEEEEEEEccCCcEEEEeecCC--------------eEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          232 GHTNKKYCITSTFSVTNGKYIVSGSEDN--------------CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      . ...   +......++++++++++.++              .+++||+.+.+.+..+.+|...|.+++|+|++++|+++
T Consensus       258 ~-~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          258 T-DCP---LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             C-SSC---EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             C-CCC---ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            3 232   33334557899999999988              89999999999999999999999999999999999999


Q ss_pred             eecCCeeEEEEeec
Q 021459          298 GLDGDRTVRVWVQD  311 (312)
Q Consensus       298 ~~dgd~~v~iw~~~  311 (312)
                      +.|  ++|++|+++
T Consensus       334 ~~d--g~v~iw~~~  345 (369)
T 3zwl_B          334 GED--GFIRLHHFE  345 (369)
T ss_dssp             ETT--SEEEEEEEC
T ss_pred             cCC--CeEEEEECc
Confidence            955  599999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.1e-44  Score=320.35  Aligned_cols=283  Identities=38%  Similarity=0.615  Sum_probs=249.4

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+.+.+|...|.+++|+|++++|++++.|+.|++|+.... .+..+.+|...|.+++|+|++++|++++.|+.+++||.
T Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR  373 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence            34667899999999999999999999999999999997654 45677889999999999999999999999999999996


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      ..  +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|..+|++++|+|+++++++++.|+.|
T Consensus       374 ~~--~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          374 NG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             TC--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CC--CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence            43  456778889999999999999999999999999999995 567778888999999999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      ++||.. ++.+..+.. +...+..++|+|++++|++++.|+.|++||. +++.+..+.+|.....++   ...+++++|+
T Consensus       451 ~~w~~~-~~~~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l---~~s~dg~~l~  524 (577)
T 2ymu_A          451 KLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---AFSPDGQTIA  524 (577)
T ss_dssp             EEEETT-SCEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---EECTTSSCEE
T ss_pred             EEEECC-CCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEE---EEcCCCCEEE
Confidence            999964 455555543 4567888999999999999999999999995 678888888888765444   3457899999


Q ss_pred             EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +++.||.|++||. +++.+..+.+|.+.|.+++|+|++++|+++|.|  ++|++|+
T Consensus       525 s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D--~~i~~Wd  577 (577)
T 2ymu_A          525 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD--KTVKLWN  577 (577)
T ss_dssp             EEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--SCEEEEC
T ss_pred             EEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--CEEEEeC
Confidence            9999999999996 567788899999999999999999999999954  6999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-44  Score=298.32  Aligned_cols=253  Identities=22%  Similarity=0.391  Sum_probs=219.6

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW  134 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w  134 (312)
                      +....+.+|.+.|.+++|+|++++|++++.||.|++||+.+. ..+..+..|...|.+++|+|+++++++++.|++|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            345678899999999999999999999999999999999875 5577888899999999999999999999999999999


Q ss_pred             EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecC
Q 021459          135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLD  213 (312)
Q Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d  213 (312)
                      |+++++.+..+..|...|.+++|+|+++++++|+.|+.|++||++++.........+...+..++|+| ++..|++|+.|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999887555444555667788999999 67899999999


Q ss_pred             CeEEEEEcCCCcEEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc
Q 021459          214 STLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN  292 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~  292 (312)
                      +.|++||++.+.....+.. +......+.. ...+++.+|++|+.||.|++||+++++.+..+.+|...|.+++|+|+++
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDY-YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEE-CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEE-EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence            9999999987765444443 3333333322 1124678999999999999999999999999999999999999999999


Q ss_pred             eEEEeeecCCeeEEEEeec
Q 021459          293 KIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~~  311 (312)
                      .|++++.|  ++|++|+..
T Consensus       242 ~l~s~s~D--g~i~iWd~~  258 (304)
T 2ynn_A          242 IIISGSED--GTLKIWNSS  258 (304)
T ss_dssp             EEEEEETT--SCEEEEETT
T ss_pred             EEEEEcCC--CeEEEEECC
Confidence            99999955  699999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-43  Score=294.06  Aligned_cols=290  Identities=27%  Similarity=0.410  Sum_probs=241.8

Q ss_pred             eceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCCc-----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASSL-----ALVHRFVGHSEGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      ....+|.+|++.|++++|+|+ +++|+||+.|++|++||+...     .+...+.+|...|.+++|+|++++|++++.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            445579999999999999997 689999999999999998754     34567789999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE-EeeecCcCeEEEEEccCC--CE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR-VIRAHSMPVTSVHFNRDG--SL  163 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~  163 (312)
                      .|++|+.... ........+...+....++++++.+++++.|+.+++||+....... ....|...+..++|++++  .+
T Consensus       109 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          109 TLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             cceEEeeccc-ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999998875 4445556677788899999999999999999999999998765433 445788899999998865  57


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST  243 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
                      +++++.|+.|++||+++++....+.. +...+..++|+|++++|++++.|+.|++||+++.+.+..+..+..    +...
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~----v~~~  262 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI----INAL  262 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC----EEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce----EEee
Confidence            88999999999999999888777654 456788899999999999999999999999999998887775532    3333


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecc---------cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL---------DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ...+++ .+++++.|+.|++||++....+..+         .+|...|.+++|+|++++|++++.|  ++|+||++.
T Consensus       263 ~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D--g~v~iW~~~  336 (340)
T 4aow_A          263 CFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD--NLVRVWQVT  336 (340)
T ss_dssp             EECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT--SCEEEEEEE
T ss_pred             ecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC--CEEEEEeCC
Confidence            344555 4566778999999999876655443         4688899999999999999999955  589999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-43  Score=291.75  Aligned_cols=289  Identities=26%  Similarity=0.404  Sum_probs=251.7

Q ss_pred             CCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459            8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus         8 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ++.+++..+++.+|.+.|++++| |++++|++++.||.|++|+..+.+....+..|...|.+++|+|++++|++++.|+.
T Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A            4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             -CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence            45667788899999999999999 99999999999999999999999888889999999999999999999999999999


Q ss_pred             EEEEeCCCCc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEE
Q 021459           88 LRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLI  164 (312)
Q Consensus        88 v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  164 (312)
                      +++|++....  +....+.+|...|.+++|  +++.+++++.||.|++||  .++....+..|..++.++.+.| +++++
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            9999986532  445667889999999999  567999999999999999  6677788888999999999998 89999


Q ss_pred             EEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      ++++.|+.+++||.  .+....+...+...+..+.++|++. +++++.|+.|++||+++++.+..+..|.....++   .
T Consensus       159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~---~  232 (313)
T 3odt_A          159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI---K  232 (313)
T ss_dssp             EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE---E
T ss_pred             EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE---E
Confidence            99999999999994  3445555554667788999999998 8999999999999999999999888887765444   3


Q ss_pred             EccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ..+++ .|++++.||.|++||+.+++....+..|...|.+++|+|+++ +++++.  |+.|++|++.
T Consensus       233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--dg~i~iw~~~  295 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS--DNLVRIFSQE  295 (313)
T ss_dssp             ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET--TSCEEEEESC
T ss_pred             EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC--CCcEEEEeCC
Confidence            34566 588999999999999999999999999999999999999997 666774  4699999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-44  Score=306.79  Aligned_cols=291  Identities=14%  Similarity=0.272  Sum_probs=241.6

Q ss_pred             ceeceeeecccccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCcceEEEee--eccCCEEEEEEcc-CCCeEEEEcCCC
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSS-DSHYICSASDDR   86 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~   86 (312)
                      ++...+.+.+|...|++++|+|++ ++|++|+.||.|++|+..+++....+.  +|...|.+++|+| ++++|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            355667889999999999999999 999999999999999999887766654  6999999999999 689999999999


Q ss_pred             eEEEEeCCCCceeeeeeec---ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-
Q 021459           87 TLRIWDARTPFDCLKTLRG---HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-  162 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  162 (312)
                      .|++||+..  ..+..+..   |...+.+++|+|+++.+++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ 
T Consensus       142 ~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          142 ATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             EEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence            999999985  33444433   4478999999999999999999999999999 4677888889999999999999999 


Q ss_pred             EEEEeeCCCeEEEEeCCC----CceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459          163 LIVSGSHDGTCKIWDAGE----GACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                      ++++++.|+.|++||+++    +.....+  .+...+..++|+| ++.+|++++.|+.|++||+++++....+..+....
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ  296 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence            999999999999999987    4444444  3566788999999 99999999999999999999887665555443110


Q ss_pred             ----e----------EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC--CccceEEEEEcCCCceEEEeeecC
Q 021459          238 ----Y----------CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG--HTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       238 ----~----------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                          .          .+......+++++  +|+.||.|++||+.+++.+..+.+  |...+..++|+|++++|++++ | 
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d-  372 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G-  372 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T-
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C-
Confidence                0          0111222345555  788999999999999988888887  456778889999999999886 4 


Q ss_pred             CeeEEEEeec
Q 021459          302 DRTVRVWVQD  311 (312)
Q Consensus       302 d~~v~iw~~~  311 (312)
                       ++|++|+++
T Consensus       373 -~~i~iw~~~  381 (383)
T 3ei3_B          373 -FNILIWNRE  381 (383)
T ss_dssp             -TEEEEEECC
T ss_pred             -CcEEEEecC
Confidence             689999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-44  Score=324.71  Aligned_cols=290  Identities=27%  Similarity=0.421  Sum_probs=239.6

Q ss_pred             ceeeecccccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCc-----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSL-----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ....+.+|.+.|++++|+|++ ++|+||+.|++|++|++...     .....+.+|...|.+++|+|++++|++|+.|+.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            345688999999999999865 79999999999999998753     345678899999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe---eecCcCeEEEEEccCC--C
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI---RAHSMPVTSVHFNRDG--S  162 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~  162 (312)
                      |++||+.+. .....+.+|...|.+++|+|+++.|++++.|++|++||+.........   ..|...|.+++|+|++  .
T Consensus       454 v~vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          454 LRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            999999875 556778899999999999999999999999999999998765443332   3577889999999987  5


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      .+++++.|+.|++||+++++....+.. +...+..++|+|++++|++++.|+.|++||+++++.+..+..+. .   +..
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~-~---v~~  607 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-V---IHA  607 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS-C---EEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC-c---EEE
Confidence            899999999999999998887766544 55678889999999999999999999999999998776654432 2   333


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchheeecccCCc-------------------cceEEEEEcCCCceEEEeeecCCe
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT-------------------DSVISVTCHPTENKIASAGLDGDR  303 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~l~~~p~~~~l~~~~~dgd~  303 (312)
                      ....+++.++++++ ++.|++||+.++..+..+..+.                   ..+.+++|+|++++|++++.|  +
T Consensus       608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--g  684 (694)
T 3dm0_A          608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--G  684 (694)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--S
T ss_pred             EEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--C
Confidence            34456777777665 5669999999887766554321                   237899999999999999955  6


Q ss_pred             eEEEEeecC
Q 021459          304 TVRVWVQDR  312 (312)
Q Consensus       304 ~v~iw~~~~  312 (312)
                      +|++|++.|
T Consensus       685 ~i~iW~i~~  693 (694)
T 3dm0_A          685 VIRVWGIGR  693 (694)
T ss_dssp             EEEEEEC--
T ss_pred             eEEEEeccC
Confidence            999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-44  Score=302.32  Aligned_cols=298  Identities=19%  Similarity=0.317  Sum_probs=240.9

Q ss_pred             CCCCceeceeeecccccceEEEEECCC----CCEEEEEeCCCeEEEEeCCCcceEEEeee-----ccCCEEEEEEccC--
Q 021459            7 PPYKPYRHFKTLTAHSRAVSCVKFSND----GTLLASASLDKTVIIWSASSLALVHRFVG-----HSEGISDLAWSSD--   75 (312)
Q Consensus         7 ~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~--   75 (312)
                      |+|+-........+|..+|++++|+|+    ...+++++.++.|++|+..+++.+..+..     |...|.+++|+|+  
T Consensus         3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A            3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            444433223445689999999999984    45666666777999999998877766665     4477999999998  


Q ss_pred             --CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEe---eecC
Q 021459           76 --SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVI---RAHS  149 (312)
Q Consensus        76 --~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~  149 (312)
                        +++|++|+.|+.|++||+.+. +.+..+.+|...|.+++|+| +++.+++++.||.|++||+++++....+   ..|.
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  161 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR  161 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred             CCCCEEEEecCCCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence              679999999999999999875 55777888999999999999 8999999999999999999999988887   6789


Q ss_pred             cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc---------------------------CCCCcEEEEEECC
Q 021459          150 MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID---------------------------DKDPAVSFAKFSP  202 (312)
Q Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~  202 (312)
                      ..|.+++|+|+++++++++.|+.|++||+++++....+..                           .+...+..+.|+ 
T Consensus       162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-  240 (366)
T 3k26_A          162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-  240 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred             CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence            9999999999999999999999999999987654432221                           144556677787 


Q ss_pred             CCCEEEEEecCCeEEEEEcCCCcE--------------EEEEEccCCceeEEEEEEEccC--CcEEEEeecCCeEEEEEC
Q 021459          203 NGKFILVGTLDSTLKLWNYSAGKF--------------LKIYTGHTNKKYCITSTFSVTN--GKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       203 ~~~~l~~~~~d~~i~v~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~  266 (312)
                       ++++++++.|+.|++||+.++..              +..+..|.....++..   .++  +++|++|+.||.|++||+
T Consensus       241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF---SMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC---EECTTSSEEEEECTTSCEEEEEC
T ss_pred             -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE---cCCCCCcEEEEEecCCcEEEEEC
Confidence             77999999999999999987643              5566666655444432   245  899999999999999999


Q ss_pred             Cchhee----ecccCC--ccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          267 QQKTMI----QKLDGH--TDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       267 ~~~~~~----~~~~~h--~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      .+++..    ..+.+|  ...|.+++|+|++++|++++.|  +.|++|++.|
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~  366 (366)
T 3k26_A          317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD--ASIWRWDRLR  366 (366)
T ss_dssp             CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT--SEEEEEEC--
T ss_pred             CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC--CEEEEEEecC
Confidence            876543    367777  7899999999999999999955  6999999865

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7e-44  Score=303.76  Aligned_cols=292  Identities=17%  Similarity=0.244  Sum_probs=250.1

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEEccC----C---Ce
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAWSSD----S---HY   78 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~   78 (312)
                      ....+.+.+|.+.|++++|+|  ++|++++.||.|++|+..+.+      .+..+.+|...|.+++|+|+    +   ++
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            344567889999999999999  899999999999999999887      77888999999999999999    9   99


Q ss_pred             EEEEcCCCeEEEEeCCCCce----eeeeeecc-----cccEEEEEEe----cCCCE-EEEeecCCcEEEEEcCC------
Q 021459           79 ICSASDDRTLRIWDARTPFD----CLKTLRGH-----SDFVFCVNFN----PQSNL-IVSGSFDESIRIWEVKT------  138 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~----~~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~~wd~~~------  138 (312)
                      |++++.|+.|++||+.+...    ....+..|     ...|.+++|+    |+++. |++++.||.|++||+++      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999876432    15666777     5899999999    99999 99999999999999988      


Q ss_pred             CeEEE-----Eee-------ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC--C---CCcEEEEEEC
Q 021459          139 GKCTR-----VIR-------AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD--K---DPAVSFAKFS  201 (312)
Q Consensus       139 ~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---~~~~~~~~~~  201 (312)
                      ++.+.     .+.       .|...+.+++|+|++ ++++++.|+.|++||+++++.+..+...  +   ...+..++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            55554     553       378889999999999 9999999999999999998877766540  3   5668889999


Q ss_pred             CCCCEEEEEecC---CeEEEEEcCCCcEEEEEEc-------------cCCceeEEEEEEEccCCcEEEEeecCCeEEEEE
Q 021459          202 PNGKFILVGTLD---STLKLWNYSAGKFLKIYTG-------------HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       202 ~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  265 (312)
                      |++++|++++.|   +.|++||+++++.+..+..             |.....+   ....+++++|++++.||.|++||
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS---LSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE---EEECSSSSEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE---EEECCCCCEEEEEeCCCeEEEEE
Confidence            999999999999   9999999999998888877             6655433   33457899999999999999999


Q ss_pred             CCchheeeccc------CC---------------ccceEEEEEcCCC----------ceEEEeeecCCeeEEEEeec
Q 021459          266 LQQKTMIQKLD------GH---------------TDSVISVTCHPTE----------NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       266 ~~~~~~~~~~~------~h---------------~~~v~~l~~~p~~----------~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +.+.+.+..+.      +|               ...|.+++|+|++          +.|++++.|  ++|++|++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d--g~i~iw~~~  394 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD--RSIRWFREA  394 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT--TEEEEEEEE
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC--CcEEEEEcC
Confidence            99998888888      78               8999999999998          789999855  699999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-42  Score=289.55  Aligned_cols=283  Identities=20%  Similarity=0.306  Sum_probs=243.5

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE---EEee--eccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV---HRFV--GHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..+|...|++++|+|++++|++++ ||.|++|+..+.+..   ..+.  +|...|.+++|+|++++|++++.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999998 999999999876432   2223  6889999999999999999999999999999


Q ss_pred             CCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           93 ARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      +.+... ....+..|...+.+++|+|+++.+++++.||.|++||+++++....+..|...+.+++|+|+++++++++.|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence            987532 4456778889999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .|++||+++++....+.  ....+..+.|+|+++++++++.++.|++||+++++.. .+..|.....   .....+++++
T Consensus       206 ~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~---~~~~~~~~~~  279 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVL---SLKFAYCGKW  279 (337)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEE---EEEECTTSSE
T ss_pred             cEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCcccee---EEEECCCCCE
Confidence            99999999988776653  3456788899999999999999999999999887754 3445555433   3344578999


Q ss_pred             EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |++++.||.|++||+.+++.+.. ..|...|.+++|+|++++|++++.  |++|++|++
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~  335 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSG--DKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEET--TSCEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecC--CCeEEEEEE
Confidence            99999999999999998777644 347889999999999999999995  469999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.8e-43  Score=296.46  Aligned_cols=287  Identities=19%  Similarity=0.264  Sum_probs=240.2

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      +..|.++|++++|+|++++|++++.|+.|++|+..+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44599999999999999999999999999999998887  7888899999999999999999999999999999999976


Q ss_pred             Cce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---E-EEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           96 PFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---T-RVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        96 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ... ....+..|...+.+++|+|+++++++++.|+.|++||++.++.   . .....|...+.+++|+|+++++++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            531 2233467889999999999999999999999999999987752   2 2335678899999999999999999999


Q ss_pred             CeEEEEeCC------------------CCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          171 GTCKIWDAG------------------EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       171 ~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      +.|++||++                  .++....+. .+...+..+.|+|++++|++++.|+.|++||+++++.+..+..
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            999999954                  455555543 3456788899999999999999999999999999999988888


Q ss_pred             cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc--hh----------------------ee----------------
Q 021459          233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ--KT----------------------MI----------------  272 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~----------------------~~----------------  272 (312)
                      +.....++   ...+++.++++| .||.|++|++.+  +.                      ..                
T Consensus       243 ~~~~v~~~---~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          243 ETLPLLAV---TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             SSCCEEEE---EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             CCCCeEEE---EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            77654444   233678888877 999999999976  31                      00                


Q ss_pred             ecc-cCCccceEEEEEc-CCC---ceEEEeeecCCeeEEEEeec
Q 021459          273 QKL-DGHTDSVISVTCH-PTE---NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       273 ~~~-~~h~~~v~~l~~~-p~~---~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ..+ .+|...|.+++|+ +++   ++|+++|.|  ++|++|++.
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D--g~i~~W~~~  360 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD--GGMSIWDVR  360 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT--SEEEEEEHH
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCC--CceEEEEec
Confidence            233 4899999999976 566   899999955  699999873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-42  Score=308.89  Aligned_cols=285  Identities=38%  Similarity=0.625  Sum_probs=249.9

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +....+.+|...|++++|+|+++.|++++.|+.|++|+.. ++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            3456788999999999999999999999999999999964 566778889999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      ...  ..+..+.+|...+.+++|+|+++.+++++.|+.|++||. +++.+..+..|..+|.+++|+|++++|++++.|+.
T Consensus       332 ~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~  408 (577)
T 2ymu_A          332 RNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  408 (577)
T ss_dssp             TTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence            865  345667889999999999999999999999999999995 56777888899999999999999999999999999


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      |++||. +++.+..+.. +...+..++|+|++++|++++.|+.|++||. +++.+..+.+|.....++   ...+++++|
T Consensus       409 v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~---~~spd~~~l  482 (577)
T 2ymu_A          409 VKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---AFSPDGQTI  482 (577)
T ss_dssp             EEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---EECTTSCEE
T ss_pred             EEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEE---EEcCCCCEE
Confidence            999995 4555555543 4567888999999999999999999999996 567777788887764443   345789999


Q ss_pred             EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|  ++|++|+.
T Consensus       483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--g~v~lwd~  537 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--KTVKLWNR  537 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT--SEEEEECT
T ss_pred             EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc--CEEEEEeC
Confidence            99999999999995 567788899999999999999999999999955  69999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=297.79  Aligned_cols=291  Identities=13%  Similarity=0.268  Sum_probs=236.6

Q ss_pred             eeeecccccceEEEEECCCCCEE-EEEeC---CCeEEEEeCCCcceEEE-eeeccCCEEEEEEccC---CCeEEEEcCCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLL-ASASL---DKTVIIWSASSLALVHR-FVGHSEGISDLAWSSD---SHYICSASDDR   86 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l-~t~~~---d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~~d~   86 (312)
                      ...+.+|...|++++|+|+++.+ ++++.   |+.|++|++.+++.... ..+|...|.+++|+|+   +++|++++.|+
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34567899999999999999655 56655   89999999998876544 3479999999999998   69999999999


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEE------ecCCCEEEEeecCCcEEEEEcCCCe-EEEEeeecCc----CeEEE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNF------NPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRAHSM----PVTSV  155 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~----~v~~~  155 (312)
                      .|++||+.+....+..+.+|...|.++.|      +|+++.|++++.||.|++||+++++ ....+..|..    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            99999998765467788899999999955      6789999999999999999999876 5666655544    78888


Q ss_pred             E----EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC---CCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          156 H----FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP---NGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       156 ~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      .    |+|+++++++++.|+.|++||+++++.....  .+...+..+.|+|   ++.+|++++.|+.|++||+++++...
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            8    7889999999999999999999988765432  3456788899999   99999999999999999998765433


Q ss_pred             EE-----EccCCceeEEEEEEEccCCc-EEEEeecCCeEEEEECCch-------------------heeecccCCccceE
Q 021459          229 IY-----TGHTNKKYCITSTFSVTNGK-YIVSGSEDNCVYVWDLQQK-------------------TMIQKLDGHTDSVI  283 (312)
Q Consensus       229 ~~-----~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~  283 (312)
                      .+     ..|.....++   ...+++. +|++++.||.|++||+...                   +.+..+.+|...|.
T Consensus       249 ~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQV---RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             EEEEEEEECCSSCEEEE---EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred             ceeeeccCCCcCCEEEE---EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence            22     3666654443   3336666 8999999999999998643                   34566788999999


Q ss_pred             EEEEcCCCceEE-EeeecCCeeEEEEeecC
Q 021459          284 SVTCHPTENKIA-SAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       284 ~l~~~p~~~~l~-~~~~dgd~~v~iw~~~~  312 (312)
                      +++|+|+++.|+ +++.  |++|++|++.+
T Consensus       326 ~~~~s~~~~~l~~s~~~--d~~i~iw~~~~  353 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSF--DQTVRVLIVTK  353 (357)
T ss_dssp             EEEECSSSTTEEEEEET--TSEEEEEEECC
T ss_pred             EEEEcCCCCeEEEEecC--CCcEEEEECCC
Confidence            999999999998 6774  46999999853

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.2e-43  Score=288.97  Aligned_cols=248  Identities=24%  Similarity=0.417  Sum_probs=225.5

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ...+.+|...|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.+++|+++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      +.. ....+..|...+.+++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus       153 ~~~-~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          153 SGK-KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             TCS-EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             CCc-eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence            763 4556777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      +||++++.....+.. +...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|......+   ...+++.+|++
T Consensus       232 iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v---~~s~~g~~l~s  307 (321)
T 3ow8_A          232 IYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV---KYNGNGSKIVS  307 (321)
T ss_dssp             EEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---EECTTSSEEEE
T ss_pred             EEECCCcceeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE---EECCCCCEEEE
Confidence            999998887766644 45668889999999999999999999999999999999988887765444   34578999999


Q ss_pred             eecCCeEEEEECC
Q 021459          255 GSEDNCVYVWDLQ  267 (312)
Q Consensus       255 ~~~dg~i~iwd~~  267 (312)
                      ++.||.|++||..
T Consensus       308 ~~~d~~i~vwd~p  320 (321)
T 3ow8_A          308 VGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTCCEEEEECC
T ss_pred             EeCCCeEEEEeCC
Confidence            9999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-42  Score=295.09  Aligned_cols=283  Identities=18%  Similarity=0.321  Sum_probs=240.8

Q ss_pred             ccccceEEEEECCCCC-EEEEEeCCCeEEEEeC----CCcc------eEEEeee----------ccCCEEEEEEccCCCe
Q 021459           20 AHSRAVSCVKFSNDGT-LLASASLDKTVIIWSA----SSLA------LVHRFVG----------HSEGISDLAWSSDSHY   78 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~   78 (312)
                      .|.++|++++|+|+++ +|++++.|+.|++|++    .+++      ....+..          |...|.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4569999999999999 9999999999999999    7777      3444443          6779999999999999


Q ss_pred             EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE--------------
Q 021459           79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV--------------  144 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--------------  144 (312)
                      |++++.|+.|++||..  ...+..+.+|...|.+++|+|+++.|++++.|+.|++||+++++....              
T Consensus       123 l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          123 IVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            9999999999999943  355677888999999999999999999999999999999987765432              


Q ss_pred             ------------------------------------------eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459          145 ------------------------------------------IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA  182 (312)
Q Consensus       145 ------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (312)
                                                                +..|..++.+++|+|+++++++++.|+.|++||+++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                      23466789999999999999999999999999999887


Q ss_pred             eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEE
Q 021459          183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                      ....+.. +...+..+.|+|++ .+++++.|+.|++||+++++.+..+..+.....++   ...+++++|++++.||.|+
T Consensus       281 ~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~---~~s~~~~~l~~~~~dg~i~  355 (425)
T 1r5m_A          281 SQNCFYG-HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG---RISQDGQKYAVAFMDGQVN  355 (425)
T ss_dssp             CSEEECC-CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE---EECTTSSEEEEEETTSCEE
T ss_pred             cceEecC-CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE---EEcCCCCEEEEEECCCeEE
Confidence            7766643 45678889999999 99999999999999999999888888776654433   3457899999999999999


Q ss_pred             EEECCchh--------------------eeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          263 VWDLQQKT--------------------MIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       263 iwd~~~~~--------------------~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +||+.+..                    .+..+.+|..  .|.+++|+|++++|++++.|  ++|++|+++
T Consensus       356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~  424 (425)
T 1r5m_A          356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL--QEGSVVAIP  424 (425)
T ss_dssp             EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS--SCCEEEECC
T ss_pred             EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC--ceEEEEeec
Confidence            99999888                    7888999976  99999999999999999955  589999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-43  Score=304.88  Aligned_cols=288  Identities=14%  Similarity=0.263  Sum_probs=234.3

Q ss_pred             ceeee-cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCC---cc---eEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           14 HFKTL-TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASS---LA---LVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        14 ~~~~~-~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      ...++ .+|.+.|++++|+| ++++|++|+.||.|++|+..+   +.   .... ..|...|.+++|+|++++|++++.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-ccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            34566 88999999999999 999999999999999999876   32   1222 2589999999999999999999999


Q ss_pred             CeEEEEeCC---CCceeeeeeec------------ccccEEEEE--EecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-
Q 021459           86 RTLRIWDAR---TPFDCLKTLRG------------HSDFVFCVN--FNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-  147 (312)
Q Consensus        86 ~~v~~wd~~---~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-  147 (312)
                      +.|++||+.   .+ +......+            +...+.++.  ++++++.+++++.|+.|++||+++++.+..+.. 
T Consensus       133 g~i~vwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  211 (437)
T 3gre_A          133 GQIIVLKVNHYQQE-SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS  211 (437)
T ss_dssp             SEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEEeccccCC-ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence            999999984   22 12222211            345566666  557899999999999999999999999988887 


Q ss_pred             -cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEEC----CCCCEEEEEecCCeEEEEEcC
Q 021459          148 -HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFS----PNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       148 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~v~d~~  222 (312)
                       |...|++++|+|+++++++|+.||.|++||+++++.+..+...+...+..++++    |++.+|++++.|+.|++||++
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence             889999999999999999999999999999999888877653445567777555    567899999999999999999


Q ss_pred             CCcEEEEEEccCCc--------------------------eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          223 AGKFLKIYTGHTNK--------------------------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       223 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      +++.+..+.++...                          ..++  .+.  ++++|++|+.||.|++||+.+++....+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l--~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI--SVS--NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE--EEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE--EEC--CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            99988888765321                          1122  232  56899999999999999999887776665


Q ss_pred             C-------------------------------------CccceEEEEEcCC--CceEEEeeecCCeeEEEEe
Q 021459          277 G-------------------------------------HTDSVISVTCHPT--ENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       277 ~-------------------------------------h~~~v~~l~~~p~--~~~l~~~~~dgd~~v~iw~  309 (312)
                      +                                     |.+.|++++|+++  +..|++++.|  ++|+||.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d--G~I~iw~  437 (437)
T 3gre_A          368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS--GLIGIFQ  437 (437)
T ss_dssp             CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT--SCEEEEC
T ss_pred             cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC--ceEEEeC
Confidence            5                                     8899999999998  7788888855  6999995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-43  Score=299.41  Aligned_cols=248  Identities=33%  Similarity=0.612  Sum_probs=226.5

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+++.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~  221 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV  221 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-------------
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-------------  160 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-------------  160 (312)
                      .++ .++..+.+|...|.++.++|+++++++++.|+.|++||++++++...+..|...|.+++|+|+             
T Consensus       222 ~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          222 QTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             TTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CCC-cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            885 567788899999999999999999999999999999999999999999999999999999996             


Q ss_pred             -------CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          161 -------GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       161 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                             +.++++|+.|+.|++||++++..+..+.. +...+..+.|+|++++|++++.|+.|++||+.+++.+..+.+|
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h  379 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  379 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence                   67899999999999999999988877754 4566888899999999999999999999999999988888888


Q ss_pred             CCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .....++   ...+++.+|++|+.||.|++|++
T Consensus       380 ~~~v~~l---~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          380 EHFVTSL---DFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEE---EECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCcEEEE---EEcCCCCEEEEEeCCCcEEEEeC
Confidence            8765443   34578899999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.9e-42  Score=317.73  Aligned_cols=292  Identities=22%  Similarity=0.383  Sum_probs=258.9

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ...+++.+|.+.|++++|+|++++|++++.||.|++|+..+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEcc-CCCEEEEeeCC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHD  170 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  170 (312)
                      +.++ +.+..+.+|.+.|.+++|+|+++.+++++.||.|++||+.++ .....+..|..++.+++|+| ++..+++++.|
T Consensus        84 ~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           84 YNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             TTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCC-cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            9875 556778889999999999999999999999999999999987 66677888999999999999 88999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      |.|++||+.++.....+.......+..+.|+|  ++.+|++++.|+.|++||+.+++.+..+.+|.....++   ...++
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~---~~~~~  239 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA---VFHPT  239 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE---EECSS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE---EEcCC
Confidence            99999999888777666655556677888999  99999999999999999999999888888887664433   34578


Q ss_pred             CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE-EEeeecCCeeEEEEee
Q 021459          249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI-ASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~~~~~dgd~~v~iw~~  310 (312)
                      +.+|++++.||.|++||+.+++....+..|...+.+++|+|++..+ ++++.|  ..+.+|+.
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~  300 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD--NGFTVLSL  300 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET--TEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC--CCEEEEEc
Confidence            8999999999999999999999999999999999999999998743 444533  35777764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-42  Score=296.84  Aligned_cols=283  Identities=15%  Similarity=0.212  Sum_probs=236.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ..+....|+|++++|++++.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+. +.+..
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~  176 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRT  176 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceE
Confidence            44455578999999999999999999999998888877899999999999999999999999999999999875 45677


Q ss_pred             eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec---CcCeE---------------------EEEEc
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH---SMPVT---------------------SVHFN  158 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~v~---------------------~~~~~  158 (312)
                      +.+|...|.+++|+|+++.|++++.|+.|++||+++++....+..+   ...+.                     +++|+
T Consensus       177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            8899999999999999999999999999999999999988877643   33344                     44557


Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcE-EEEEEccCCc
Q 021459          159 RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKF-LKIYTGHTNK  236 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~  236 (312)
                      |+++++++++.||.|++||+++++....+...+...+..++|+|++. +|++++.||.|++||+++++. +..+..+...
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  336 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT  336 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence            89999999999999999999998887777666677899999999999 999999999999999998754 5666654332


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEECCchh---------eeecccCCccceEEEEEcCCCc---eEEEeeecCCee
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT---------MIQKLDGHTDSVISVTCHPTEN---KIASAGLDGDRT  304 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~---~l~~~~~dgd~~  304 (312)
                      .  +...+. +++.+|++++.||.|++||+....         ....+.+|...|.+++|+|+++   .++++|.+  +.
T Consensus       337 ~--v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~--g~  411 (420)
T 3vl1_A          337 P--INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN--NF  411 (420)
T ss_dssp             C--EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT--TE
T ss_pred             C--ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC--ce
Confidence            2  222333 467899999999999999987632         2234557888999999999998   67777744  58


Q ss_pred             EEEEeec
Q 021459          305 VRVWVQD  311 (312)
Q Consensus       305 v~iw~~~  311 (312)
                      +++|+++
T Consensus       412 ~~~~~~~  418 (420)
T 3vl1_A          412 CALYNLS  418 (420)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            9999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-43  Score=303.46  Aligned_cols=287  Identities=15%  Similarity=0.230  Sum_probs=242.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~   94 (312)
                      .|...|++++|+|++++|++++.||.|++|++..    .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5889999999999999999999999999999987    4577888899999999999998 8999999999999999998


Q ss_pred             CCc------ee--eeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeec------CcCeEEEEEcc
Q 021459           95 TPF------DC--LKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAH------SMPVTSVHFNR  159 (312)
Q Consensus        95 ~~~------~~--~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~  159 (312)
                      +..      ..  .....+|...+.+++|+|+ ++.+++++.||.|++||+++++....+..+      ...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            754      21  2234578899999999999 789999999999999999999988888766      78899999999


Q ss_pred             CC-CEEEEeeCCC---eEEEEeCCCCc-eeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          160 DG-SLIVSGSHDG---TCKIWDAGEGA-CLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       160 ~~-~~l~~~~~d~---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      ++ .++++++.|+   .|++||++++. ....+...+...+..++|+| ++++|++++.|+.|++||+++++.+..+..|
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence            97 6899999998   99999999864 34433314566788899999 9999999999999999999999999999888


Q ss_pred             CCceeEEEEEEEccCC-cEEEEeecCCeEEEEECCchheeeccc-----------------------------------C
Q 021459          234 TNKKYCITSTFSVTNG-KYIVSGSEDNCVYVWDLQQKTMIQKLD-----------------------------------G  277 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~  277 (312)
                      ......+  .+ .+++ .+|++++.||.|++||+.+........                                   .
T Consensus       305 ~~~v~~~--~~-s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (416)
T 2pm9_A          305 GNWCFKT--KF-APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW  381 (416)
T ss_dssp             SSCCCCE--EE-CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred             CCceEEE--EE-CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence            7765444  23 3566 899999999999999997654332221                                   1


Q ss_pred             CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          278 HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       278 h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |..++.+++|+|++++|++++.  |++|+||++.
T Consensus       382 ~~~~~~~~~~s~dg~~la~~~~--d~~v~~w~~~  413 (416)
T 2pm9_A          382 YGEPSPAAHWAFGGKLVQITPD--GKGVSITNPK  413 (416)
T ss_dssp             TCCCSCCCEEETTTEEECBCTT--SSCBCCBCCC
T ss_pred             ccCCccceEEeeCCeEEEEeCC--CCeEEEEEec
Confidence            6678889999999999999984  5689999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-44  Score=302.81  Aligned_cols=285  Identities=14%  Similarity=0.179  Sum_probs=225.3

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      +..|.++|++++|+|++++|++++.|+.|++|+..++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4457889999999999999999999999999999987  67778889999999999999999999999999999999987


Q ss_pred             Cc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---EEEeee-cCcCeEEEEEccCCCEEEEeeC
Q 021459           96 PF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---TRVIRA-HSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        96 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ..  .....+.+|...|.+++|+|+++.|++++.|+.|++||+++++.   ...+.. |...|.+++|+|+++++++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            53  23556678999999999999999999999999999999998763   566666 8999999999999999999999


Q ss_pred             CCeEEEEeCCC------------------CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE----E
Q 021459          170 DGTCKIWDAGE------------------GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF----L  227 (312)
Q Consensus       170 d~~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~  227 (312)
                      |+.|++||+..                  ++....+  .+...+..++|+|++++|++++.|+.|++||+.+++.    +
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            99999999852                  3333333  4566788999999999999999999999999998876    6


Q ss_pred             EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh--ee---------------------------------
Q 021459          228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT--MI---------------------------------  272 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~---------------------------------  272 (312)
                      ..+..|.....++   ...+++++|++|+.++.+ +|+.....  ..                                 
T Consensus       245 ~~~~~~~~~v~~~---~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (377)
T 3dwl_C          245 ITVKLSQLPLRSL---LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL  320 (377)
T ss_dssp             CCEECSSSCEEEE---EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred             EeecCCCCceEEE---EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence            6677777664444   334678999999877766 66554211  00                                 


Q ss_pred             -e----------------cccCCccceEEEEEcCCCc----eEEEeeecCCeeEEEEee
Q 021459          273 -Q----------------KLDGHTDSVISVTCHPTEN----KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       273 -~----------------~~~~h~~~v~~l~~~p~~~----~l~~~~~dgd~~v~iw~~  310 (312)
                       .                ....|...|.++++.+...    .|+|+|.|  ++|++|++
T Consensus       321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~D--g~i~iWdl  377 (377)
T 3dwl_C          321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTD--GRVVLWTL  377 (377)
T ss_dssp             ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETT--SEEEEECC
T ss_pred             cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCC--CcEEEecC
Confidence             0                0123899999999776543    59999965  59999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-43  Score=305.23  Aligned_cols=294  Identities=20%  Similarity=0.300  Sum_probs=230.2

Q ss_pred             ceeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEcc-CCCeEEEEcCCC
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSS-DSHYICSASDDR   86 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   86 (312)
                      .++..+...+|...|++|+|+| ++++||+|+.||.|+|||+.+.+  ....+.+|...|++++|+| ++++|++|+.|+
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            4455567778999999999999 56799999999999999988664  3445678999999999998 688999999999


Q ss_pred             eEEEEeCCCCceeeeeee---cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-
Q 021459           87 TLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-  162 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  162 (312)
                      +|++||+++..  ...+.   .+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|+|++. 
T Consensus       188 ~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          188 TTRLQDFKGNI--LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW  264 (435)
T ss_dssp             CEEEEETTSCE--EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred             EEEEeeccCCc--eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence            99999997642  22222   2344578899999999999999999999999875 45667888999999999999876 


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcc--cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce---
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLI--DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK---  237 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~---  237 (312)
                      ++++++.|+.|++||+++......+.  ..+...+..++|+|++.+|++++.|+.|++||+.+++....+..|....   
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence            78899999999999998765443332  2345678889999999999999999999999999888766665443211   


Q ss_pred             -eEEEEEEEccCCcEEEEe------------ecCCeEEEEECCchheeecc-cCCccceEEE-EEcCCCceEEEeeecCC
Q 021459          238 -YCITSTFSVTNGKYIVSG------------SEDNCVYVWDLQQKTMIQKL-DGHTDSVISV-TCHPTENKIASAGLDGD  302 (312)
Q Consensus       238 -~~~~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l-~~~p~~~~l~~~~~dgd  302 (312)
                       ..+...+ .+++..++++            ..++.|++||..+++.+..+ .+|...|.++ +|+|++.+|++++ |  
T Consensus       345 ~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d--  420 (435)
T 4e54_B          345 LTPIKAAW-HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G--  420 (435)
T ss_dssp             SCCCBCEE-CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S--
T ss_pred             ceeEEEEE-cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C--
Confidence             1111112 2333334333            34568999999998887765 4688888888 6999999998865 3  


Q ss_pred             eeEEEEeec
Q 021459          303 RTVRVWVQD  311 (312)
Q Consensus       303 ~~v~iw~~~  311 (312)
                      .+|+||++.
T Consensus       421 ~~i~iW~~~  429 (435)
T 4e54_B          421 YHILIWSQQ  429 (435)
T ss_dssp             SEEEECCCC
T ss_pred             CcEEEEECC
Confidence            489999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9e-42  Score=291.34  Aligned_cols=295  Identities=19%  Similarity=0.363  Sum_probs=240.6

Q ss_pred             eceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEee-------------eccCCEEEEEEcc-CCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFV-------------GHSEGISDLAWSS-DSH   77 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~   77 (312)
                      +....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++.....+.             +|...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34456778999999999999 99999999999999999998765443332             4899999999999 778


Q ss_pred             eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecC---CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ---SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        78 ~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      +|++++.|+.|++||+.+. +....+. +...+.++.+.|.   +..+++++.++.|++||+++++....+..|..+|.+
T Consensus       114 ~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTL-QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             CEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             EEEEEeCCCeEEEeeCCCC-ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            9999999999999999875 4444443 6678899999884   459999999999999999999988899999999999


Q ss_pred             EEEccCCC-EEEEeeCCCeEEEEeCCCCce-eeEcc--------------cCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459          155 VHFNRDGS-LIVSGSHDGTCKIWDAGEGAC-LKTLI--------------DDKDPAVSFAKFSPNGKFILVGTLDSTLKL  218 (312)
Q Consensus       155 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  218 (312)
                      ++|+|+++ ++++++.||.|++||++++.. ...+.              ..+...+..++|+|++++|++++.|+.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            99999998 588999999999999987652 22210              234566888999999999999999999999


Q ss_pred             EEcCCCcEEEEEEccCCc--eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEE
Q 021459          219 WNYSAGKFLKIYTGHTNK--KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIAS  296 (312)
Q Consensus       219 ~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~  296 (312)
                      ||+.+++.......+...  ............+..+++++.+|.|++||+.+++.+..+.+|...|.+++|+|++++|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            999987754433221110  011111222334566777889999999999999999999999999999999999999999


Q ss_pred             eeecCCeeEEEEeec
Q 021459          297 AGLDGDRTVRVWVQD  311 (312)
Q Consensus       297 ~~~dgd~~v~iw~~~  311 (312)
                      ++.|  +.|++|+++
T Consensus       352 ~~~d--g~i~iw~~~  364 (408)
T 4a11_B          352 GSRD--CNILAWVPS  364 (408)
T ss_dssp             EETT--SCEEEEEEC
T ss_pred             ECCC--CeEEEEeCC
Confidence            9955  589999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.3e-41  Score=281.03  Aligned_cols=247  Identities=25%  Similarity=0.492  Sum_probs=219.6

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      ....+..|...|.+++|+|++++|++|+.|+.+++|++.+.    .....+.+|...|.++.|++++. +++++.|+.|+
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~  167 (340)
T 1got_B           89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCA  167 (340)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred             cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEE
Confidence            34566789999999999999999999999999999998764    34566789999999999998875 88899999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      +||+.++ +.+..+.+|.+.|.+++|+|+++++++++.|+.|++||++++++...+..|...|.+++|+|++++|++|+.
T Consensus       168 ~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          168 LWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCC-cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            9999875 567788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          170 DGTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      |+.|++||+++++.+..+... ....+..++|+|++++|++|+.|+.|++||..+++.+..+.+|.....++   ...++
T Consensus       247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~---~~s~d  323 (340)
T 1got_B          247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL---GVTDD  323 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE---EECTT
T ss_pred             CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE---EEcCC
Confidence            999999999988766654322 22458889999999999999999999999999999999999998875554   34578


Q ss_pred             CcEEEEeecCCeEEEEE
Q 021459          249 GKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd  265 (312)
                      +.+|++|+.||.|++||
T Consensus       324 g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEcCCccEEecC
Confidence            99999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-43  Score=301.95  Aligned_cols=287  Identities=19%  Similarity=0.347  Sum_probs=241.5

Q ss_pred             cccceEEEEECCCCC-EEEEE----------eCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           21 HSRAVSCVKFSNDGT-LLASA----------SLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        21 h~~~v~~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      +...|.+++|+|+++ +|+++          +.|+.|++|+..++..  ......|...|.+++|+|++++|++++.|+.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            345788999999987 99999          8999999999988752  2223358899999999999999999999999


Q ss_pred             EEEEeCCC---CceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCe------EEE---EeeecCcCeEE
Q 021459           88 LRIWDART---PFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGK------CTR---VIRAHSMPVTS  154 (312)
Q Consensus        88 v~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~------~~~---~~~~~~~~v~~  154 (312)
                      |++||+..   +...+..+.+|...|.+++|+|+ ++++++++.|+.|++||+++++      ...   ....|...+.+
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999976   23467778889999999999998 8999999999999999998876      322   23568889999


Q ss_pred             EEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCC-----CCcEEEEEECCCC-CEEEEEecCC---eEEEEEcCCC
Q 021459          155 VHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDK-----DPAVSFAKFSPNG-KFILVGTLDS---TLKLWNYSAG  224 (312)
Q Consensus       155 ~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~  224 (312)
                      ++|+|+ +.++++++.|+.|++||+++++....+....     ...+..++|+|++ .++++++.|+   .|++||++++
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            999998 7899999999999999999988777665432     5678889999997 6899999998   9999999886


Q ss_pred             -cEEEEEE-ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecC
Q 021459          225 -KFLKIYT-GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDG  301 (312)
Q Consensus       225 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dg  301 (312)
                       ..+..+. +|.....++  .+.+.++.+|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ..|++++.| 
T Consensus       251 ~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-  327 (416)
T 2pm9_A          251 NTPLQTLNQGHQKGILSL--DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD-  327 (416)
T ss_dssp             TSCSBCCCSCCSSCEEEE--EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS-
T ss_pred             CCCcEEeecCccCceeEE--EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC-
Confidence             4555555 566554333  3333388999999999999999999999999999999999999999998 789998855 


Q ss_pred             CeeEEEEeec
Q 021459          302 DRTVRVWVQD  311 (312)
Q Consensus       302 d~~v~iw~~~  311 (312)
                       ++|++|++.
T Consensus       328 -~~i~iw~~~  336 (416)
T 2pm9_A          328 -NKIEVQTLQ  336 (416)
T ss_dssp             -SEEEEEESC
T ss_pred             -CcEEEEEcc
Confidence             699999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.1e-40  Score=283.58  Aligned_cols=276  Identities=27%  Similarity=0.484  Sum_probs=228.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee--eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      .++.|+||++ ++||+| .|++|+|||..+++....+.  +|...|++++|+|+|++|++|+.|+.|++||+.+. +.+.
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEE
Confidence            4678999975 577766 58999999999998776554  57788999999999999999999999999999885 6678


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      .+.+|...+.+++++  +..+++++.|+.+++||.... ..+..+..|...+..+.++|+++++++++.|+.+++||..+
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            888999999988775  579999999999999998764 44567788999999999999999999999999999999987


Q ss_pred             Cceee---EcccCCCCcEEEEEECCCCC-EEEE--EecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          181 GACLK---TLIDDKDPAVSFAKFSPNGK-FILV--GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       181 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      ++...   .....+...+..++|+|.+. .+++  |+.|+.|++||+.+++....+..+...   ....+. ++++.+++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v---~~~~~~-~~~~~lv~  337 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV---CSILWS-PHYKELIS  337 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE---EEEEEE-TTTTEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce---eeeeec-CCCCeEEE
Confidence            65321   12234456688888999765 4544  357999999999999988887765442   233344 55666665


Q ss_pred             e--ecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          255 G--SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       255 ~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +  ..||.|++||+.+++++..+.+|.+.|++|+|+|++++|+++|.|  ++|+||++
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D--~tvriWdv  393 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD--ETLRLWRC  393 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence            4  379999999999999999999999999999999999999999955  69999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.6e-41  Score=281.30  Aligned_cols=246  Identities=20%  Similarity=0.277  Sum_probs=203.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE----EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH----RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      .|...|.+++|+|++ .|++|+.||.|++||+.+++.+.    ...+|...|++++|+|++++|++|+.|+.|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            467789999999985 67899999999999998876433    3458999999999999999999999999999999988


Q ss_pred             CceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccC-CCEEEEeeCCC
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRD-GSLIVSGSHDG  171 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~  171 (312)
                      + +.+..+.+|.+.|.+++|+|++. ++++++.|++|++||+++++....+.  .+...+.+++|+|+ ++++++|+.|+
T Consensus       159 ~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          159 Q-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             T-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             C-cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            5 66788899999999999999874 78999999999999999998877664  35567899999994 56889999999


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      .|++||+++++.+..+.. +...+..++|+|++ ++|++++.|++|++||.++++.+ .+.+|.....++  .+.+.+..
T Consensus       238 ~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v--~~sp~~~~  313 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA--TWSPLNHS  313 (344)
T ss_dssp             EEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE--EECSSSTT
T ss_pred             cEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE--EEeCCCCe
Confidence            999999999988877654 45668889999998 57899999999999999888765 456787765443  34433445


Q ss_pred             EEEEeecCCeEEEEECCchhe
Q 021459          251 YIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~  271 (312)
                      +|++++.||.|++|++.+...
T Consensus       314 llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEcCCCeEEEEECCCCCC
Confidence            788999999999999976543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-41  Score=282.54  Aligned_cols=279  Identities=12%  Similarity=0.138  Sum_probs=237.2

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---eEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA---LVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRI   90 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~   90 (312)
                      ++...+|.+.|++++|+|++++|++++.|+.|++|++.++.   ......+|...|.+++|+|+++ +|++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44556899999999999999999999999999999998776   3455668999999999999999 9999999999999


Q ss_pred             EeC-CCCceeeeeeec--ccccEEEEEEecCCCEEEEeecCCcEEEEEcCC---------CeEEEEeeecCcCeEEEEEc
Q 021459           91 WDA-RTPFDCLKTLRG--HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT---------GKCTRVIRAHSMPVTSVHFN  158 (312)
Q Consensus        91 wd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~~  158 (312)
                      ||+ .+..  ...+.+  |...|.+++|+| ++.+++++.|+.|++||+++         ++.+..+. |...+.+++|+
T Consensus        84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           84 VDLIGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             ECSSSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEeccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence            999 7653  356777  999999999999 99999999999999999987         66555555 78899999999


Q ss_pred             cCCCEEEEeeCCCeEEEEeCCC-Cce-eeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCC------cEEEE
Q 021459          159 RDGSLIVSGSHDGTCKIWDAGE-GAC-LKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAG------KFLKI  229 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~------~~~~~  229 (312)
                      |++  +++++.++.|++||+++ +.. .......+...+..+.|+| +++++++++.||.|++||++..      +....
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            887  99999999999999987 543 2223334556788899999 9999999999999999999876      66677


Q ss_pred             EEccCCc------eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC-ccceEEEEEcCCCceEEEeeecC
Q 021459          230 YTGHTNK------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH-TDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       230 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      +..|...      ...+......+++++|++++.||.|++||+.+++.+..+.+| ...|.+++  |++++|++++.||
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            7776540      112333444578999999999999999999999999999998 99999999  9999999999886

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.9e-41  Score=276.35  Aligned_cols=250  Identities=25%  Similarity=0.446  Sum_probs=216.7

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+++.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecC------CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQ------SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      +.  ..+..+.+|...+.++.+.|.      +..+++++.|+.|++||+++.+....+..|..+|.+++|+|++++|+++
T Consensus       137 ~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          137 KG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             TS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             CC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence            74  456778899999999999985      4489999999999999999999888899999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-----ceeEEEE
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-----KKYCITS  242 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~~  242 (312)
                      +.|+.|++||+.+++.+..+..  ...+..++|+|++.+|++++. +.+++|++..+..+..+..+..     ....+..
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  291 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS  291 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred             eCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence            9999999999999888776643  345888999999999988775 5699999988776665543211     0111233


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCc
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ..+.+++++|++|+.||.|++||+.+
T Consensus       292 ~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          292 LAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEECCCCCEEEEeecCceEEEEEEee
Confidence            34458899999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=292.78  Aligned_cols=286  Identities=20%  Similarity=0.344  Sum_probs=228.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----------eEEEeeecc------------CCEEEEEEccCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----------LVHRFVGHS------------EGISDLAWSSDS   76 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~   76 (312)
                      .|.+.|++++|+|++++||+|+.||.|++|+..+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            368999999999999999999999999999998776           477888998            889999999998


Q ss_pred             --CeEEEEcCCCeEEEEeCCCCcee--------------------------------------e-eeeecccccEEEEEE
Q 021459           77 --HYICSASDDRTLRIWDARTPFDC--------------------------------------L-KTLRGHSDFVFCVNF  115 (312)
Q Consensus        77 --~~l~~~~~d~~v~~wd~~~~~~~--------------------------------------~-~~~~~~~~~v~~~~~  115 (312)
                        .+|++++.|+.|++||+.+....                                      . ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998642110                                      0 113579999999999


Q ss_pred             ecCCCEEEEeecCCcEEEEEcCC-CeEEE-------EeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCce---
Q 021459          116 NPQSNLIVSGSFDESIRIWEVKT-GKCTR-------VIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGAC---  183 (312)
Q Consensus       116 ~~~~~~l~s~~~dg~i~~wd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~---  183 (312)
                      +|++++|+++ .|+.|++||+++ ++...       .+..|...|.+++|+|++ +++++++.|+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999984 44443       245788899999999998 9999999999999999998775   


Q ss_pred             -eeEcccCCC-----------CcEEEEEECCCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCcee------------
Q 021459          184 -LKTLIDDKD-----------PAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKY------------  238 (312)
Q Consensus       184 -~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~------------  238 (312)
                       ...+..+..           ..+..++|+|++++|++++. +.|++||++. ++.+..+..|.....            
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             444433332           27889999999999999998 9999999987 777777776643111            


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeec--------------------------------ccCCccceEEEE
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK--------------------------------LDGHTDSVISVT  286 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------~~~h~~~v~~l~  286 (312)
                      .+....+.+++++|++|+.||.|++||+.+++.+..                                ...+...|..++
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  423 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA  423 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence            000123347899999999999999999987655421                                012345789999


Q ss_pred             EcCCCceEEEeeecCCeeEEEEee
Q 021459          287 CHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       287 ~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      |||+++.|++++.+   .+.+|..
T Consensus       424 ~~p~~~~la~~~~~---~~~~~~~  444 (447)
T 3dw8_B          424 WHPKENIIAVATTN---NLYIFQD  444 (447)
T ss_dssp             ECSSSSEEEEECSS---CEEEEEC
T ss_pred             ECCCCCEEEEEecc---eeeeecc
Confidence            99999999999865   4888864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=269.28  Aligned_cols=293  Identities=26%  Similarity=0.449  Sum_probs=231.5

Q ss_pred             CCCCceeceeeeccc--cc--ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee--eccCCEEEEEEccCCCeEE
Q 021459            7 PPYKPYRHFKTLTAH--SR--AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSDSHYIC   80 (312)
Q Consensus         7 ~~~~~~~~~~~~~~h--~~--~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~   80 (312)
                      .++-|..+++.|.+.  .+  ..++|+||+++ +||+| .|++|+|||..+++.+..+.  +|...|.+++|+|++++|+
T Consensus         6 ~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~   83 (318)
T 4ggc_A            6 CRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA   83 (318)
T ss_dssp             CCCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred             CcccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence            344555566666532  22  36789999986 66665 58999999999998877664  5778899999999999999


Q ss_pred             EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEcc
Q 021459           81 SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        81 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~  159 (312)
                      +|+.|+.|++||++++ +.+..+.+|...+.++.+  ++..+++++.++.+++|+.... .....+..|...+..+.+.+
T Consensus        84 sgs~Dg~v~iw~~~~~-~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCcEEEeecCCc-eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999999885 667788899888876654  5679999999999999998765 44566778999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceee---EcccCCCCcEEEEEECCCCCEE---EEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLK---TLIDDKDPAVSFAKFSPNGKFI---LVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l---~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      +++++++++.|+.|++||+++++...   .........+....+.|++..+   ++++.++.|++||.+...........
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence            99999999999999999998765322   1122344567777888876533   35677899999999888776655433


Q ss_pred             CCceeEEEEEEEccCCcEEEE--eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          234 TNKKYCITSTFSVTNGKYIVS--GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .. .  ....+. +.+..+++  |+.||.|++||+.+++++..+.+|.+.|.+++|+|++++|+++|.|  ++|+||++
T Consensus       241 ~~-v--~~~~~~-~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D--~~v~iWd~  313 (318)
T 4ggc_A          241 SQ-V--CSILWS-PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD--ETLRLWRC  313 (318)
T ss_dssp             SC-E--EEEEEE-TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred             ee-e--eeeeec-ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence            32 2  222333 45555554  4589999999999999999999999999999999999999999955  59999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-42  Score=302.51  Aligned_cols=286  Identities=14%  Similarity=0.121  Sum_probs=220.4

Q ss_pred             cccceEEEEECCCC---------CEEEE-------------------EeCCCeEEEEeCCCcce----EEEeeeccCCEE
Q 021459           21 HSRAVSCVKFSNDG---------TLLAS-------------------ASLDKTVIIWSASSLAL----VHRFVGHSEGIS   68 (312)
Q Consensus        21 h~~~v~~~~~s~~~---------~~l~t-------------------~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~   68 (312)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+||++.+++.    ...+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56778888888765         45555                   55789999999877653    234567788999


Q ss_pred             EEEEccC------CCeEEEEcCCCeEEEEeCCCCce----------eeeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           69 DLAWSSD------SHYICSASDDRTLRIWDARTPFD----------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        69 ~~~~~~~------~~~l~~~~~d~~v~~wd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      +++|+|+      +.+||+++.||+|++||+..+..          ....+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999975421          12356789999999999986 5899999999999


Q ss_pred             EEEcCCCe-EEEEeeecCcCeEEE--EEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCCEE
Q 021459          133 IWEVKTGK-CTRVIRAHSMPVTSV--HFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGKFI  207 (312)
Q Consensus       133 ~wd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  207 (312)
                      +||+++++ ....+..|..+|.++  .|+|++ .+|++++.|++|++||+++++....+..+.. ..+..++|+|+++.+
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            99998764 345678899999999  578887 8999999999999999998776554433322 235567899999999


Q ss_pred             EEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch------------------
Q 021459          208 LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK------------------  269 (312)
Q Consensus       208 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------  269 (312)
                      ++++.|++|++||++++..+..+.+|......+   ...+++++|++|+.||+|++||+...                  
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv---a~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~  447 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAI---GVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLW  447 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEECSSCEEEE---ECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEE
T ss_pred             EEeCCCCcEEEEECcccccceeeecCCCceEEE---EeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEE
Confidence            999999999999999988877788888775554   33578999999999999999975211                  


Q ss_pred             --------------------------heeecccCCccceEEEEEcCCCc---eEEEeeecCCeeEEEEeecC
Q 021459          270 --------------------------TMIQKLDGHTDSVISVTCHPTEN---KIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       270 --------------------------~~~~~~~~h~~~v~~l~~~p~~~---~l~~~~~dgd~~v~iw~~~~  312 (312)
                                                ..+..+.+|...|.+|+|+|+++   .+++|+  .+++||||++++
T Consensus       448 ~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~--~~g~vrlw~l~~  517 (524)
T 2j04_B          448 KWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN--SAGLLTLEYLSL  517 (524)
T ss_dssp             ECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC--TTSEEEEEECSC
T ss_pred             EeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc--cCceEEEEEccc
Confidence                                      11223456888999999999964   788877  456999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-40  Score=283.75  Aligned_cols=280  Identities=22%  Similarity=0.411  Sum_probs=233.1

Q ss_pred             ccccc--eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           20 AHSRA--VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        20 ~h~~~--v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      +|.+.  +.++.|++  ..+++++.|+.|++|+..+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+.
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            56655  44466654  5588888999999999999988776665 7889999999999999999999999999999875


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                       +.+..+.+|...|.+++|+  ++.+++++.||.|++||++ .+.....+..|...|.+++|+|+++++++++.|+.|++
T Consensus       167 -~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          167 -TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI  243 (401)
T ss_dssp             -CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence             5577788999999999994  5799999999999999998 56667788889999999999999999999999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEe--cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGT--LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      ||+++++....+.. +...+..++|+|++. ++++++  .|+.|++||+.+++.+..+..+ ..   +......++++++
T Consensus       244 wd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~---v~~~~~s~~~~~l  318 (401)
T 4aez_A          244 WDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ---VTSLIWSPHSKEI  318 (401)
T ss_dssp             EETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC---EEEEEECSSSSEE
T ss_pred             ccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc---EEEEEECCCCCeE
Confidence            99999887766543 455677889999765 555554  7999999999999988877643 22   3334445788888


Q ss_pred             EE--eecCCeEEEEECCchhee--ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          253 VS--GSEDNCVYVWDLQQKTMI--QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       253 ~~--~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++  |+.||.|++||+.+....  ..+.+|...|.+++|+|++++|++++.|  ++|++|++.
T Consensus       319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d--g~i~iw~~~  379 (401)
T 4aez_A          319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD--ENLKFWRVY  379 (401)
T ss_dssp             EEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT--SEEEEEECC
T ss_pred             EEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEECC
Confidence            88  558999999999875443  4467899999999999999999999955  699999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.5e-41  Score=284.92  Aligned_cols=280  Identities=17%  Similarity=0.187  Sum_probs=215.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCC-------CeEEEEeCCCcce----------EEEeeeccCCEEEEEEccCCCeEEEE--
Q 021459           22 SRAVSCVKFSNDGTLLASASLD-------KTVIIWSASSLAL----------VHRFVGHSEGISDLAWSSDSHYICSA--   82 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d-------~~i~vw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~--   82 (312)
                      .-||++++|+||+++|++||.+       +.|++|++.....          ...+.+|...|.+++++  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            4589999999999999998754       3599998765321          12345677788777664  5566655  


Q ss_pred             ---------cCCCeEEEEeCCCCceeeee--------eecccccEEEEEEecCCCEEEE--eecCCcEEEEEcCCCeEEE
Q 021459           83 ---------SDDRTLRIWDARTPFDCLKT--------LRGHSDFVFCVNFNPQSNLIVS--GSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        83 ---------~~d~~v~~wd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~~wd~~~~~~~~  143 (312)
                               +.|+.+++|++......+..        ...+...+.+++|+|||+++++  ++.|++|++||+++++.+.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     45778999987654322221        1234456889999999998764  4578999999999999887


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCC----eEEE
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDS----TLKL  218 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~v  218 (312)
                      .+. |...|.+++|+|+|+++++++.++ +.+|+..++.... .....+...+..++|+|+++++++++.|+    .+++
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            775 777899999999999999998654 5666666655443 33344566788899999999999998887    6888


Q ss_pred             EEcCCCcE----EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeec-ccCCccceEEEEEcCCCce
Q 021459          219 WNYSAGKF----LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK-LDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       219 ~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~  293 (312)
                      ||......    ...+.+|.....+   ....|++++||+|+.||.|+|||+.+++++.. +.+|...|++|+|+|++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~---~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITS---MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEE---EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             cccccceecceeeeeecCCCCCeEe---EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence            99876653    2345556555433   34458999999999999999999999988877 5799999999999999999


Q ss_pred             EEEeeecCCeeEEEEee
Q 021459          294 IASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~  310 (312)
                      |+++|.|  ++||||++
T Consensus       327 laS~S~D--~tvrvw~i  341 (365)
T 4h5i_A          327 VASVSAA--NTIHIIKL  341 (365)
T ss_dssp             EEEEETT--SEEEEEEC
T ss_pred             EEEEeCC--CeEEEEEc
Confidence            9999955  69999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-40  Score=276.16  Aligned_cols=251  Identities=27%  Similarity=0.523  Sum_probs=197.7

Q ss_pred             eeee-cc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-------cceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           15 FKTL-TA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-------LALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        15 ~~~~-~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      ...+ .+ |.+.|.+++|+|++++|++|+.|+.|++|+...       .+.+..+.+|...|.+++|+|++++|++|+.|
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D  128 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD  128 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT
T ss_pred             EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3444 34 999999999999999999999999999999843       34567788999999999999999999999999


Q ss_pred             CeEEEEeCCCC---ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--eEEEEeeecCcCeEEEEEccC
Q 021459           86 RTLRIWDARTP---FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus        86 ~~v~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~  160 (312)
                      +.|++||+...   .+.+..+.+|...|.+++|+|++++|++++.|++|++||+.++  +++..+..|...|.+++|+|+
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            99999998532   2456678899999999999999999999999999999999876  567788899999999999998


Q ss_pred             --CCEEEEeeCCCeEEEEeCCCC--------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EE
Q 021459          161 --GSLIVSGSHDGTCKIWDAGEG--------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LK  228 (312)
Q Consensus       161 --~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~  228 (312)
                        +.++++++.|+.|++||++.+        .....+...+...+..++|++++ +|++++.||.|++||..+++.  ..
T Consensus       209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence              678999999999999998654        22333333356678889999765 889999999999999987743  22


Q ss_pred             EE-EccCC-ceeEEEEEEEcc-CCcEEEEeecCCeEEEEECCc
Q 021459          229 IY-TGHTN-KKYCITSTFSVT-NGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       229 ~~-~~~~~-~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      .. ..|.. ...++  .+.+. ++.+|++|+.||.|++||++.
T Consensus       288 ~~~~~h~~~~v~~v--~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          288 KRALCHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EESCTTTTSCEEEE--EEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccccccceEEEE--EEecCCCceEEEEecCCCcEEEEEecc
Confidence            22 34543 33333  23322 578999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-40  Score=275.74  Aligned_cols=282  Identities=17%  Similarity=0.299  Sum_probs=237.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce--
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD--   98 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~--   98 (312)
                      |.++|.+++|+|+|++++++..++.+..|............+|...|.+++|+|++++|++++ |+.|++||+.+...  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            677899999999999999988877777776665555555668999999999999999999998 99999999976432  


Q ss_pred             eeeeee--cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           99 CLKTLR--GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        99 ~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      ....+.  +|...+.+++|+|+++.+++++.|+.|++||+++++  ....+..|...+.+++|+|+++++++++.|+.|+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~  166 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA  166 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            222232  688999999999999999999999999999999877  5556778888999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      +||+++++....+.. +...+..+.|+|++++|++++.|+.|++||+++++.+..+. +....   ......+++++|++
T Consensus       167 ~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v---~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          167 VWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQI---FSLGYCPTGEWLAV  241 (337)
T ss_dssp             EEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE---EEEEECTTSSEEEE
T ss_pred             EEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCce---EEEEECCCCCEEEE
Confidence            999999887776644 45668889999999999999999999999999998877665 33332   33344578999999


Q ss_pred             eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          255 GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++.+|.|++||+.+.+. ..+..|...|.+++|+|++++|++++.|  +.|++|+..
T Consensus       242 ~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~~~~  295 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKD--NLLNAWRTP  295 (337)
T ss_dssp             EETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETT--SEEEEEETT
T ss_pred             EcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCC--CcEEEEECC
Confidence            99999999999987764 4567899999999999999999999854  699999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-40  Score=319.70  Aligned_cols=288  Identities=26%  Similarity=0.447  Sum_probs=255.0

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|+..+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceeeeeeecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      + +.+..+.+|...|.+++|+|  ++..+++++.|+.|++||++++++...+..|..+|.+++|+|+++++++++.||.|
T Consensus       689 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          689 G-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             C-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             C-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            5 56778889999999999999  45689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeEcccC------------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE-ccCCceeEE
Q 021459          174 KIWDAGEGACLKTLIDD------------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT-GHTNKKYCI  240 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~  240 (312)
                      ++||++++.....+...            ....+..++|+|+++.+++++ ++.+.+||..++..+..+. +|.....++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            99999887765544211            122455678999999999887 7899999999988877665 555544333


Q ss_pred             EEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                         ...+++.++++++.||.|++||+.++..+..+.+|...|.+++|+|+++.|++++.|  ++|++|+.
T Consensus       847 ---~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d--g~v~vw~~  911 (1249)
T 3sfz_A          847 ---DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD--QTIRVWET  911 (1249)
T ss_dssp             ---EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEEH
T ss_pred             ---EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC--CeEEEEEc
Confidence               345789999999999999999999999999999999999999999999999999955  69999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.1e-41  Score=288.82  Aligned_cols=280  Identities=19%  Similarity=0.266  Sum_probs=230.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .+++++|+|++++|++++.|+.+++|+..+.+....+..| ..+....|++++++|++++.|+.|++||+.+. +....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-LQREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-EEEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-ceeeec
Confidence            3457899999999999999999999999887665555555 34445578999999999999999999999864 556666


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      .+|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            78999999999999999999999999999999999998899999999999999999999999999999999999999887


Q ss_pred             eeEcccC--CCCcEEE---------------------EEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-cCCceeE
Q 021459          184 LKTLIDD--KDPAVSF---------------------AKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYC  239 (312)
Q Consensus       184 ~~~~~~~--~~~~~~~---------------------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~  239 (312)
                      ...+...  ....+..                     +.|+|++++|++++.||.|++||+++++.+..+.. |.....+
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence            7766432  1222332                     34678999999999999999999999887766543 4444333


Q ss_pred             EEEEEEccCCc-EEEEeecCCeEEEEECCchhe-eecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          240 ITSTFSVTNGK-YIVSGSEDNCVYVWDLQQKTM-IQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       240 ~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                         ....+++. +|++|+.||.|++||+.+.+. +..+.+ |...|.++.+ |++++|++++  .|++|++|++.
T Consensus       296 ---~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~--~d~~v~iw~~~  364 (420)
T 3vl1_A          296 ---LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG--FDTSIKLDIIS  364 (420)
T ss_dssp             ---EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET--TTEEEEEEEEC
T ss_pred             ---EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec--CCccEEEEecc
Confidence               33346676 999999999999999988644 666666 5667888855 5778999988  45799999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=277.84  Aligned_cols=255  Identities=22%  Similarity=0.430  Sum_probs=206.2

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..+|...|++++|+|++++|++|+.|+.+++|+....  +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+..
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            3689999999999999999999999999999998765  45677889999999999999999999999999999999876


Q ss_pred             Cc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           96 PF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        96 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      ..  ..+..+.+|...|.+++|+|++++|++++.|+.|++||+++++  +...+..|...|.+++|+|++++|++++.|+
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            43  3456678899999999999999999999999999999998875  3467788999999999999999999999999


Q ss_pred             eEEEEeCCCC---------------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE---------E
Q 021459          172 TCKIWDAGEG---------------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF---------L  227 (312)
Q Consensus       172 ~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~  227 (312)
                      .|++||....               .++..+...+...+..++|+|++..|++++.|+.|++|+...+..         .
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~  296 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA  296 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence            9999996322               112233333556788899999999999999999999999865421         1


Q ss_pred             EEEEccCCceeEEEEEEEccCC-cEEEEeecCCeEEEEECCchheeecc
Q 021459          228 KIYTGHTNKKYCITSTFSVTNG-KYIVSGSEDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  275 (312)
                      ....+|.....++  .+ .|++ .+|++|+.||.|++|++.+.+.....
T Consensus       297 ~~~~~h~~~V~~v--~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          297 HLHQAHSQDVNCV--AW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EETTSSSSCEEEE--EE-CSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eecccccCcEeEe--EE-eCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            1123455554443  33 3554 69999999999999999877655443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-40  Score=297.82  Aligned_cols=286  Identities=20%  Similarity=0.342  Sum_probs=247.3

Q ss_pred             eceeeecccccc-eEEEEECC--CCCEEEEEeCCCeEEEEeCCCc--------ceEEEeeeccCCEEEEEEccCCCeEEE
Q 021459           13 RHFKTLTAHSRA-VSCVKFSN--DGTLLASASLDKTVIIWSASSL--------ALVHRFVGHSEGISDLAWSSDSHYICS   81 (312)
Q Consensus        13 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~   81 (312)
                      .....+.+|... |++++|+|  ++++|++++.||.|++|++.++        +.+..+..|...|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            556778899999 99999999  9999999999999999999754        667778889999999999999999999


Q ss_pred             EcCC----CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCc---CeE
Q 021459           82 ASDD----RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSM---PVT  153 (312)
Q Consensus        82 ~~~d----~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~v~  153 (312)
                      ++.+    +.|++||..   +.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..|..   .|.
T Consensus       134 ~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  210 (615)
T ss_dssp             EECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             eccCCCCccEEEEEECC---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence            9987    689999843   45677789999999999999997 899999999999999999999999999988   999


Q ss_pred             EEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEccc---CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          154 SVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLID---DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       154 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      +++|+|+ ++++++++.|+.|++||+++++.+..+..   .+...+..+.|+ ++++|++++.|+.|++||+++++.+..
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            9999999 99999999999999999999988877733   566778889999 999999999999999999999998888


Q ss_pred             EEccCCc--eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          230 YTGHTNK--KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       230 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      +..+...  .......+  +++.++++++.||.|++||+.+.+.+..+.+|...|.+++| |+   +++++.|  ++|++
T Consensus       290 ~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~d--g~i~~  361 (615)
T 1pgu_A          290 WTLDKQQLGNQQVGVVA--TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYD--GRIME  361 (615)
T ss_dssp             EECCTTCGGGCEEEEEE--EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETT--SCEEE
T ss_pred             EcCCCCcccCceeEEEe--CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCC--CeEEE
Confidence            7765211  11222222  26889999999999999999998888889999999999999 77   7777744  47777


Q ss_pred             Eee
Q 021459          308 WVQ  310 (312)
Q Consensus       308 w~~  310 (312)
                      |+.
T Consensus       362 w~~  364 (615)
T 1pgu_A          362 WSS  364 (615)
T ss_dssp             TTT
T ss_pred             EEc
Confidence            764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.3e-40  Score=284.39  Aligned_cols=282  Identities=24%  Similarity=0.489  Sum_probs=240.6

Q ss_pred             ceeeecccccce-EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           14 HFKTLTAHSRAV-SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        14 ~~~~~~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ...++.+|...| +++.+  ++++|++|+.||.|++||..+++.+..+.+|...|.+++|+|++ +|++|+.||.|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            345788998885 66665  57899999999999999999999999999999999999999988 999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEe--cCCCEEEEeecCCcEEEEEcCCCeE-----------------------EEEeee
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFN--PQSNLIVSGSFDESIRIWEVKTGKC-----------------------TRVIRA  147 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~~wd~~~~~~-----------------------~~~~~~  147 (312)
                      ++++ +.+..+.+|.+.|.+++|+  ++++.+++++.||.|++||+++++.                       ...+..
T Consensus       190 ~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          190 IKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             TTTT-EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             CCCC-cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            9875 5677888999999999998  4778999999999999999987652                       345567


Q ss_pred             cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE
Q 021459          148 HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL  227 (312)
Q Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  227 (312)
                      |...+.++  +++++++++++.|+.|++||+++++.+..+.. +...+..+.++|+++++++++.|+.|++||+++++.+
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            77777776  57889999999999999999999888777654 4566888999999999999999999999999999999


Q ss_pred             EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      ..+.+|.....++..     ++.+|++++.||.|++||+.+........ |...+..++|+|+++.+++++ |  ++|++
T Consensus       346 ~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d--g~i~i  416 (464)
T 3v7d_B          346 YTLQGHTALVGLLRL-----SDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E--NQFNI  416 (464)
T ss_dssp             EEECCCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T--TEEEE
T ss_pred             EEEeCCCCcEEEEEE-----cCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C--CeEEE
Confidence            999888876554432     36899999999999999998876554443 566778889999999999887 4  58999


Q ss_pred             Eeec
Q 021459          308 WVQD  311 (312)
Q Consensus       308 w~~~  311 (312)
                      |++.
T Consensus       417 wd~~  420 (464)
T 3v7d_B          417 YNLR  420 (464)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-40  Score=271.67  Aligned_cols=248  Identities=23%  Similarity=0.420  Sum_probs=203.5

Q ss_pred             EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEE
Q 021459           59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWE  135 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd  135 (312)
                      .+.+|...|.+++|+|+|++|++|+.|+.|++||+... .+.+..+.+|.+.|.+++|+++  +++|++++.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            45789999999999999999999999999999998643 3456788999999999999863  88999999999999999


Q ss_pred             cCCCe--EEEEeeecCcCeEEEEEccC--CCEEEEeeCCCeEEEEeCCCCcee-eEcccCCCCcEEEEEECCC-------
Q 021459          136 VKTGK--CTRVIRAHSMPVTSVHFNRD--GSLIVSGSHDGTCKIWDAGEGACL-KTLIDDKDPAVSFAKFSPN-------  203 (312)
Q Consensus       136 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-------  203 (312)
                      +++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++... ......+...+..+.|+|+       
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence            98874  45566779999999999997  889999999999999999875321 2223345567888899997       


Q ss_pred             ------CCEEEEEecCCeEEEEEcCCCc----EEEEEEccCCceeEEEEEEEccC---CcEEEEeecCCeEEEEECCchh
Q 021459          204 ------GKFILVGTLDSTLKLWNYSAGK----FLKIYTGHTNKKYCITSTFSVTN---GKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       204 ------~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                            +++|++|+.|+.|++||+++++    ....+.+|.....++.  + .++   +.+|++++.||.|++||+....
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~--~-sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA--W-SPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE--E-CCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE--E-CCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                  5799999999999999998765    4556777877654443  3 344   4899999999999999987642


Q ss_pred             ---eeecc--cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          271 ---MIQKL--DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       271 ---~~~~~--~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                         ....+  .+|...|.+++|+|++++|++++.|  ++|+||+..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D--~~v~lw~~~  284 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--NKVTLWKEN  284 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT--SCEEEEEEC
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEEcCC--CcEEEEEEC
Confidence               11223  5688899999999999999999954  689999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.4e-39  Score=281.66  Aligned_cols=282  Identities=29%  Similarity=0.584  Sum_probs=243.7

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +...++.+|...|.+++|+  ++++++|+.||.|++|+..+++.+..+.+|...|.+++|+  ++.+++|+.|+.|++||
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence            4456788999999999997  6799999999999999999999999999999999999995  56899999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      +.++ +.+..+.+|...+.++++  +++.+++++.||.|++||+++++.+..+..|...+.++.|  ++.++++++.|+.
T Consensus       226 ~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~  300 (445)
T 2ovr_B          226 IETG-QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS  300 (445)
T ss_dssp             SSSC-CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred             CCCC-cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence            9875 556778889999999998  6789999999999999999999999999999999999998  7889999999999


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc---cCCceeEEEEEEEccCC
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG---HTNKKYCITSTFSVTNG  249 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  249 (312)
                      |++||+++++.+..+..+ ...+..+.+  +++++++++.||.|++||+++++.+..+..   |.....++   ..  ++
T Consensus       301 i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~--~~  372 (445)
T 2ovr_B          301 IRVWDVETGNCIHTLTGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL---QF--NK  372 (445)
T ss_dssp             EEEEETTTCCEEEEECCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE---EE--CS
T ss_pred             EEEEECCCCCEEEEEcCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE---EE--CC
Confidence            999999999888776543 444554444  677999999999999999999999888876   44433333   22  47


Q ss_pred             cEEEEeecCCeEEEEECCchheeecc-----cCCccceEEEEEcCCCceEEEeeecC--CeeEEEEeec
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMIQKL-----DGHTDSVISVTCHPTENKIASAGLDG--DRTVRVWVQD  311 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~l~~~~~dg--d~~v~iw~~~  311 (312)
                      ++|++|+.||.|++||+.+++.+..+     .+|.+.|.+++|+|++..+++++.||  +..|++|+++
T Consensus       373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            89999999999999999998887776     46888999999999999999999776  2459999885

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=273.91  Aligned_cols=248  Identities=25%  Similarity=0.467  Sum_probs=217.5

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ....+..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++..|++++.|+.
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~  177 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT  177 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence            34556778899999999999999999999999999987542      344567789999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      |++||++++ +.+..+.+|...|.+++++|  +++.|++++.||.|++||+++++++..+..|...|.+++|+|++.+|+
T Consensus       178 v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  256 (354)
T 2pbi_B          178 CALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA  256 (354)
T ss_dssp             EEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE
Confidence            999999875 56778889999999999987  468999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +++.|+.|++||++.+.....+... ....+..+.|+|++.+|++++.|+.|++||+.+++.+..+.+|.....++   .
T Consensus       257 s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l---~  333 (354)
T 2pbi_B          257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL---R  333 (354)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE---E
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE---E
Confidence            9999999999999987665544322 22357788999999999999999999999999999988888888765444   3


Q ss_pred             EccCCcEEEEeecCCeEEEEE
Q 021459          245 SVTNGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd  265 (312)
                      ..+++++|++|+.||.|++|+
T Consensus       334 ~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          334 VSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCEEEEEcCCCCEEecC
Confidence            457899999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4e-39  Score=280.11  Aligned_cols=284  Identities=26%  Similarity=0.458  Sum_probs=234.7

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEc--cCCCeEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS--SDSHYICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~   90 (312)
                      +...++.+|.+.|.+++|+|++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +++.++++++.|+.|++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence            4556778999999999999988 99999999999999999999999999999999999998  47789999999999999


Q ss_pred             EeCCCCce----------------------eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec
Q 021459           91 WDARTPFD----------------------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH  148 (312)
Q Consensus        91 wd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  148 (312)
                      ||+.+...                      ....+.+|...+.++  +++++.+++++.||.|++||+++++.+..+..|
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            99876432                      144567788888776  577899999999999999999999999999999


Q ss_pred             CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      ...|.+++|+|+++++++|+.|+.|++||+++++.+..+.. +...+..+.++  +++|++++.||.|++||+.++....
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            99999999999999999999999999999999988877654 45567777776  5799999999999999999887655


Q ss_pred             EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeec-ccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459          229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK-LDGHTDSVISVTCHPTENKIASAGLDGDRTVRV  307 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i  307 (312)
                      ... +......   ....+++.++++|+ ||.|++||+.+++.+.. +.+|...|.+++|+ ....+++++.||  .+.+
T Consensus       387 ~~~-~~~~~~~---~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g--~~~i  458 (464)
T 3v7d_B          387 SYH-HTNLSAI---TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDG--QSFL  458 (464)
T ss_dssp             EEE-CTTCCCE---EEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETT--EEEE
T ss_pred             eec-CCCCccE---EEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCC--eEEE
Confidence            443 2222222   22335788999988 89999999999988875 67789999999997 333444445444  4444


Q ss_pred             Eee
Q 021459          308 WVQ  310 (312)
Q Consensus       308 w~~  310 (312)
                      |.+
T Consensus       459 ~~l  461 (464)
T 3v7d_B          459 EIL  461 (464)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7e-40  Score=275.73  Aligned_cols=289  Identities=14%  Similarity=0.263  Sum_probs=234.4

Q ss_pred             CCCceeceeeecccccceEEEEECCC---CCEEEEEeCCCeEEEEeCCC-cceE-EEeeeccCCEEEEEEccCCCeEEEE
Q 021459            8 PYKPYRHFKTLTAHSRAVSCVKFSND---GTLLASASLDKTVIIWSASS-LALV-HRFVGHSEGISDLAWSSDSHYICSA   82 (312)
Q Consensus         8 ~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~   82 (312)
                      ...|.+.++.+.+|.+.|++++|+|+   |++|++|+.||.|++|++.+ +..+ ..+.+|...|.+++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            34566777889999999999999999   69999999999999999987 4444 6788999999999999999999999


Q ss_pred             cCCCeEEEEeCCCCceeeeeeecccccEEEEEE--ecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC
Q 021459           83 SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNF--NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus        83 ~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
                      +.|+.|++||+.+.. .. ...+|...|.+++|  +|+++++++++.||.|++||+++++.+..+..+. .+.++.+.+ 
T Consensus       105 ~~dg~v~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-  180 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQ-AI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY-  180 (368)
T ss_dssp             ETTSEEEEEETTTTE-EE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET-
T ss_pred             cCCCcEEEEEcCCCC-ce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC-
Confidence            999999999998753 33 35679999999999  8899999999999999999999998888777654 566666654 


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCE----EEEEecCCeEEEEEcCCC---cEEEEEEc
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKF----ILVGTLDSTLKLWNYSAG---KFLKIYTG  232 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----l~~~~~d~~i~v~d~~~~---~~~~~~~~  232 (312)
                       ..+++++.++.+.+|+++........ ............+.++...    +++++.|+.|++||++..   ..+..+..
T Consensus       181 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          181 -PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             -TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             -CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence             47888999999999999876543322 2222333445555444433    999999999999999877   44555555


Q ss_pred             cCCce---------eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          233 HTNKK---------YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       233 ~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      |....         ..+......+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|+++|.|+
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            54310         0234444557899999999999999999999999999999999999999999999999999764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.7e-40  Score=275.94  Aligned_cols=290  Identities=17%  Similarity=0.226  Sum_probs=220.2

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLR   89 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~   89 (312)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|++.+.    +....+.+|...|.+++|+|  ++++|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789999999999999999999999999999999875    45667789999999999999  699999999999999


Q ss_pred             EEeCCCCc--------eeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEEEEee-------------
Q 021459           90 IWDARTPF--------DCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCTRVIR-------------  146 (312)
Q Consensus        90 ~wd~~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------------  146 (312)
                      +||+....        +.+..+.+|...|.+++|+|+  ++++++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99997643        446677789999999999999  9999999999999999998876443322             


Q ss_pred             ecCcCeEEEEEccC---CCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCC----CEEEEEecCCeEE
Q 021459          147 AHSMPVTSVHFNRD---GSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNG----KFILVGTLDSTLK  217 (312)
Q Consensus       147 ~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~  217 (312)
                      .|...+.++.|+|+   +.++++++.++.+.+|+...+..  ...+ ..+...+..++|+|++    ++|++++.||.|+
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            46678999999997   89999999999998888777654  3333 3456678899999998    8999999999999


Q ss_pred             EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE----EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459          218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI----VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      +||++.+............   ............+    ..+...+.+.+|+....+.+..+.+|...|.+++|+|++++
T Consensus       244 iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             EEeCCCCcCccccCCcccc---eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            9999876543322211111   0001111111222    23344556677777677788889999999999999999999


Q ss_pred             EEEeeecCCeeEEEEeec
Q 021459          294 IASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~~  311 (312)
                      |++++.|  ++|++|++.
T Consensus       321 l~s~~~d--g~v~iw~~~  336 (351)
T 3f3f_A          321 LSSAGDD--GKVRLWKAT  336 (351)
T ss_dssp             EEEEETT--SCEEEEEEC
T ss_pred             EEEecCC--CcEEEEecC
Confidence            9999955  589999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.2e-40  Score=269.92  Aligned_cols=248  Identities=21%  Similarity=0.318  Sum_probs=204.5

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIW   91 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~w   91 (312)
                      ..+.+|.+.|++++|+|+|++||+|+.|+.|++|++..  .+.+..+.+|...|.+++|+++  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999874  3567788999999999999864  8999999999999999


Q ss_pred             eCCCCc-eeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeE--EEEeeecCcCeEEEEEccC------
Q 021459           92 DARTPF-DCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKC--TRVIRAHSMPVTSVHFNRD------  160 (312)
Q Consensus        92 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~------  160 (312)
                      |++++. ..+..+.+|...|.+++|+|+  +++|++++.|+.|++||++++..  ...+..|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998653 345566789999999999997  78999999999999999987632  3566789999999999997      


Q ss_pred             -------CCEEEEeeCCCeEEEEeCCCCc----eeeEcccCCCCcEEEEEECCCC---CEEEEEecCCeEEEEEcCCCc-
Q 021459          161 -------GSLIVSGSHDGTCKIWDAGEGA----CLKTLIDDKDPAVSFAKFSPNG---KFILVGTLDSTLKLWNYSAGK-  225 (312)
Q Consensus       161 -------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~-  225 (312)
                             +++|++|+.|+.|++||++++.    ....+ ..+...+..++|+|++   .+|++++.|++|++||++.+. 
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                   5799999999999999998765    33333 3456678899999985   899999999999999997643 


Q ss_pred             --EEEEE--EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          226 --FLKIY--TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       226 --~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                        ....+  ..+...   +....+.+++++|++++.||.|++|+..
T Consensus       242 ~~~~~~~~~~~~~~~---v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEESSSSCCSSC---EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccceeeeecccCCCc---EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence              12222  223333   3333445789999999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.2e-40  Score=282.57  Aligned_cols=274  Identities=30%  Similarity=0.552  Sum_probs=236.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      ...+|...|.++.+  ++++|++|+.||.|++||..+++....+.+|...|.+++|  ++++|++|+.||.|++||+.++
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            33467788998886  7999999999999999999999999999999999999999  7889999999999999999875


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE---EEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT---RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                       +.+..+.+|...|.+++|++  +.+++++.||.|++||+++++..   ..+..|...|.++.+  +++++++|+.|+.|
T Consensus       204 -~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i  278 (435)
T 1p22_A          204 -EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI  278 (435)
T ss_dssp             -CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             -cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence             56777889999999999974  59999999999999999887654   566789999999998  67899999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      ++||+++++.+..+.. +...+..+.+  +++++++|+.||.|++||+++++.+..+.+|.....++..     ++.+|+
T Consensus       279 ~vwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-----~~~~l~  350 (435)
T 1p22_A          279 KVWNTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----DNKRIV  350 (435)
T ss_dssp             EEEETTTCCEEEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-----CSSEEE
T ss_pred             EEEECCcCcEEEEEcC-CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-----cCCEEE
Confidence            9999999988877654 3455666666  5789999999999999999999999999888876555432     688999


Q ss_pred             EeecCCeEEEEECCchh---------eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          254 SGSEDNCVYVWDLQQKT---------MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|+.||.|++||+.+..         .+..+.+|...|.+++|  ++..|++++.|  ++|++|++.
T Consensus       351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D--g~i~iwd~~  413 (435)
T 1p22_A          351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD--DTILIWDFL  413 (435)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS--SEEEEEC--
T ss_pred             EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC--CEEEEEECC
Confidence            99999999999997665         67788999999999999  77889999855  699999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.2e-39  Score=276.45  Aligned_cols=278  Identities=32%  Similarity=0.611  Sum_probs=240.6

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ..+.+.+|.+.|.. ++++++++|++|+.||.|++|+..+++.+..+.+|...|.+++|+  ++++++|+.|+.|++||+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            44678899987533 345578999999999999999999999999999999999999997  669999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .++ +.+..+.+|...|.++.++  ++.+++++.||.|++||+++++....+..|..++.++.+  +++++++++.|+.|
T Consensus       187 ~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          187 ETG-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV  261 (445)
T ss_dssp             TTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred             CcC-cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEE
Confidence            875 5677888999999999996  568999999999999999999999999999999999998  78899999999999


Q ss_pred             EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459          174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      ++||+++++.+..+.. +...+..+.+  ++.++++++.|+.|++||+++++.+..+.+|.....++.     .++++++
T Consensus       262 ~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~  333 (445)
T 2ovr_B          262 KVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-----LKDNILV  333 (445)
T ss_dssp             EEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-----EETTEEE
T ss_pred             EEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE-----EeCCEEE
Confidence            9999999888777654 4455666667  788999999999999999999999988888776544432     2467999


Q ss_pred             EeecCCeEEEEECCchheeecccC---CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDG---HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|+.||.|++||+.+++.+..+.+   |...|.+++|+  +++|++++.|  ++|++|++.
T Consensus       334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d--g~v~iwd~~  390 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD--GTVKLWDLK  390 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT--SEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC--CeEEEEECC
Confidence            999999999999998888888776   88899999996  5789999855  699999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-39  Score=275.71  Aligned_cols=243  Identities=30%  Similarity=0.504  Sum_probs=206.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ..|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++ +....
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~  202 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLT  202 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-eeEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999875 33444


Q ss_pred             eecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEe-------eecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          103 LRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVI-------RAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      +. +...+.+++|+| +++++++++.|+.|++||+++++.+..+       ..|...|.+++|+|+++++++++.|+.|+
T Consensus       203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            43 556789999999 8999999999999999999998877665       46888999999999999999999999999


Q ss_pred             EEeCCCCce------------eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          175 IWDAGEGAC------------LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       175 iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                      +||+++...            ...+. .+...+..++++|++.+|++++.|+.|++||..+++.+..+.+|.....++..
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            999876422            22222 34456778899999999999999999999999999999999999887655533


Q ss_pred             EE---EccCCcEEEEeecCCeEEEEECCc
Q 021459          243 TF---SVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       243 ~~---~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ..   ..+++.+|++|+.||.|++|++..
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            21   113678999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-38  Score=262.26  Aligned_cols=250  Identities=34%  Similarity=0.575  Sum_probs=217.4

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  136 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  136 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                      ++. +.+..+..|...|.+++|+|+++++++++.||.|++||+++++....+. .+..++..++|+|+++++++++.|+.
T Consensus       137 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
T 4ery_A          137 KTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  215 (312)
T ss_dssp             TTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred             CCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            875 5567788899999999999999999999999999999999988776654 45667999999999999999999999


Q ss_pred             EEEEeCCCCceeeEcccCCCC--cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          173 CKIWDAGEGACLKTLIDDKDP--AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      |++||+++++.+..+..+...  .+......+++.+|++++.||.|++||+.+++.+..+.+|......+   ...+++.
T Consensus       216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~---~~~p~~~  292 (312)
T 4ery_A          216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST---ACHPTEN  292 (312)
T ss_dssp             EEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE---EECSSSS
T ss_pred             EEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE---eecCcCC
Confidence            999999998887766544332  22233345788899999999999999999999999998887764433   3457788


Q ss_pred             EEEEee--cCCeEEEEECC
Q 021459          251 YIVSGS--EDNCVYVWDLQ  267 (312)
Q Consensus       251 ~l~~~~--~dg~i~iwd~~  267 (312)
                      ++++++  .||.|++|+..
T Consensus       293 ~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          293 IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEccCCccEEEecCC
Confidence            999886  69999999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-38  Score=286.41  Aligned_cols=290  Identities=20%  Similarity=0.328  Sum_probs=233.2

Q ss_pred             eeceeeeccccc---ceEEEEECCC-CCEEEEEeCCCeEEEEeCCCcceEEEe-e---eccCCEEEEEEccCCCeEEEEc
Q 021459           12 YRHFKTLTAHSR---AVSCVKFSND-GTLLASASLDKTVIIWSASSLALVHRF-V---GHSEGISDLAWSSDSHYICSAS   83 (312)
Q Consensus        12 ~~~~~~~~~h~~---~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~   83 (312)
                      .+...++.+|..   .|++++|+|+ +++|++++.|+.|++||+.+++.+..+ .   .|...|.+++|+ ++++|++++
T Consensus       193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG  271 (615)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred             cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence            345567788999   9999999999 999999999999999999999998888 6   899999999999 999999999


Q ss_pred             CCCeEEEEeCCCCceeeeeeecc----cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459           84 DDRTLRIWDARTPFDCLKTLRGH----SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR  159 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
                      .|+.|++||+.+. +.+..+..+    ...+.++.|. +++.+++++.+|.|++||+.+++....+..|..+|.+++| |
T Consensus       272 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          272 ADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N  348 (615)
T ss_dssp             TTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred             CCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence            9999999999875 445555554    4677788885 8899999999999999999988777777666655555554 3


Q ss_pred             C---------------------------------CCEEEEeeCCCeEEEE------------------------------
Q 021459          160 D---------------------------------GSLIVSGSHDGTCKIW------------------------------  176 (312)
Q Consensus       160 ~---------------------------------~~~l~~~~~d~~i~iw------------------------------  176 (312)
                      +                                 +..+++++.|+.+++|                              
T Consensus       349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  428 (615)
T 1pgu_A          349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  428 (615)
T ss_dssp             TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence            2                                 4444444444444444                              


Q ss_pred             --------------------------------------------eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          177 --------------------------------------------DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       177 --------------------------------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                                                                  |+.++.........+...+..++|+|++++|++++.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence                                                        443332221222334566888999999999999999


Q ss_pred             CCeEEEEEcCCCcEEEEEEc-cCCceeEEEEEEEcc----------CCcEEEEeecCCeEEEEECCch-heeecccCCcc
Q 021459          213 DSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVT----------NGKYIVSGSEDNCVYVWDLQQK-TMIQKLDGHTD  280 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~  280 (312)
                      |+.|++||+.+++.+..+.+ |.....++   ...+          ++++|++++.||.|++||+.+. ..+..+.+|..
T Consensus       509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~---~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~  585 (615)
T 1pgu_A          509 MGKILLYDLQSREVKTSRWAFRTSKINAI---SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD  585 (615)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEE---EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred             CCeEEEeeCCCCcceeEeecCCCCceeEE---EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence            99999999999998877766 66654443   3446          8999999999999999999987 67888999999


Q ss_pred             ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          281 SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       281 ~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .|.+++|+|+++ |++++.|  ++|++|+++
T Consensus       586 ~v~~l~~s~~~~-l~s~~~d--~~v~iw~~~  613 (615)
T 1pgu_A          586 GVNNLLWETPST-LVSSGAD--ACIKRWNVV  613 (615)
T ss_dssp             CEEEEEEEETTE-EEEEETT--SCEEEEEEC
T ss_pred             ceEEEEEcCCCC-eEEecCC--ceEEEEeee
Confidence            999999999999 9999854  699999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-39  Score=269.60  Aligned_cols=249  Identities=24%  Similarity=0.419  Sum_probs=204.1

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ....+.+|...|++++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcee-eeeeecccccEEEEEEecCC----------CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC
Q 021459           94 RTPFDC-LKTLRGHSDFVFCVNFNPQS----------NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        94 ~~~~~~-~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
                      ...... .....+|...+.+++|+|++          .++++++.|+.|++|| ...+....+..|..+|.+++|+|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~  226 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK  226 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC
Confidence            742111 11123688899999999986          7899999999999999 45666778889999999999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCCc-eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE--EEE--------
Q 021459          163 LIVSGSHDGTCKIWDAGEGA-CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK--IYT--------  231 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~--------  231 (312)
                      +|++|+.|+.|++||+.+.. ....+.  ....+..++|+|++.+++++ .|+.|++||+.+++...  .+.        
T Consensus       227 ~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          227 YIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             EEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             EEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence            99999999999999995433 333321  23458889999999887655 58889999998765433  222        


Q ss_pred             ---ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          232 ---GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       232 ---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                         +|...   +....+.+++++|++|+.||.|++|++.++
T Consensus       304 ~~~~~~~~---v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          304 GQKGKNPQ---CTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             TBCCSCCC---EEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhcCCCCc---eEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence               22222   333445578999999999999999998654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-40  Score=273.28  Aligned_cols=247  Identities=20%  Similarity=0.305  Sum_probs=198.6

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEEEe
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRIWD   92 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd   92 (312)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|+.|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998764  4677889999999999986  489999999999999999


Q ss_pred             CCCCc-eeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEEEEccC------
Q 021459           93 ARTPF-DCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFNRD------  160 (312)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~------  160 (312)
                      ++++. .....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+..|...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98653 345567789999999999998  78999999999999999987632   3345678889999999997      


Q ss_pred             -----------CCEEEEeeCCCeEEEEeCCCC---ceeeEcccCCCCcEEEEEECCCC----CEEEEEecCCeEEEEEcC
Q 021459          161 -----------GSLIVSGSHDGTCKIWDAGEG---ACLKTLIDDKDPAVSFAKFSPNG----KFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       161 -----------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~  222 (312)
                                 +++|++|+.|+.|++||++..   +....+ ..+...+..++|+|++    .+|++++.|++|++||+.
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                       468999999999999999754   233333 3455678889999986    789999999999999987


Q ss_pred             CC---c-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          223 AG---K-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       223 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +.   . ....+..|......   ..+.+++++|++++.||.|++|+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~---v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          247 DASSNTWSPKLLHKFNDVVWH---VSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             STTCCCCBCCEEEECSSCEEE---EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CccccchhhhhhhcCCCcEEE---EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            62   1 12234445554333   3345789999999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.9e-40  Score=275.77  Aligned_cols=279  Identities=18%  Similarity=0.193  Sum_probs=194.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC------CCeEEEEeCCCCc
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD------DRTLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~~wd~~~~~   97 (312)
                      .-..+.+.+++.++.+. .+.....|++....    ..+|...|++++|+|||++|++++.      |+.+++|+..+..
T Consensus         7 ~~sg~d~g~~~~~~~~~-g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~   81 (357)
T 4g56_B            7 HSSGVDLGTENLYFQSN-GSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA   81 (357)
T ss_dssp             --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred             cccCCCCCccceEEecC-CCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence            34456666666555444 45677889875433    3469999999999999999999997      7789999876542


Q ss_pred             e---eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE----EeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           98 D---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR----VIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        98 ~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      .   ......+|...|.+++|+|++. +++++.||+|++||+.+++...    ....|...|++++|+|++++|++++.|
T Consensus        82 ~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d  160 (357)
T 4g56_B           82 PNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD  160 (357)
T ss_dssp             -CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            2   2233456888999999999875 5567889999999998876543    234688999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      +.|++||+++++.+..+.. +...+..++|+|++. ++++++.|+.|++||+++++....+..+..........+.+.++
T Consensus       161 g~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          161 FSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            9999999999988777644 456788899999875 78899999999999999887665544332222233344555567


Q ss_pred             cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEeec
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+|++|+.|+.|++||+++.+.+..+.+|...|.+++|+|++ ++|++++.|  ++|+||+.+
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D--~~i~iwd~~  300 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED--CTVAVLDAD  300 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT--SCEEEECTT
T ss_pred             ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC--CEEEEEECC
Confidence            899999999999999999999999999999999999999987 468888854  699999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.1e-40  Score=270.87  Aligned_cols=247  Identities=23%  Similarity=0.340  Sum_probs=196.4

Q ss_pred             eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEec--CCCEEEEeecCCcEEEEEc
Q 021459           60 FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        60 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~  136 (312)
                      +.+|...|++++|+|++++|++|+.|+.|++||+.++. ..+..+.+|.+.|.+++|++  ++++|++++.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            46899999999999999999999999999999997653 34567889999999999975  4889999999999999999


Q ss_pred             CCCe--EEEEeeecCcCeEEEEEccC--CCEEEEeeCCCeEEEEeCCCCcee--eEcccCCCCcEEEEEECCC-------
Q 021459          137 KTGK--CTRVIRAHSMPVTSVHFNRD--GSLIVSGSHDGTCKIWDAGEGACL--KTLIDDKDPAVSFAKFSPN-------  203 (312)
Q Consensus       137 ~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~-------  203 (312)
                      ++++  ....+..|...|.+++|+|+  +.+|++|+.|+.|++||++.+...  ......+...+..+.|+|+       
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  168 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI  168 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence            8873  55667789999999999997  789999999999999999875321  2222334445666778887       


Q ss_pred             ----------CCEEEEEecCCeEEEEEcCCC---cEEEEEEccCCceeEEEEEEEccCC----cEEEEeecCCeEEEEEC
Q 021459          204 ----------GKFILVGTLDSTLKLWNYSAG---KFLKIYTGHTNKKYCITSTFSVTNG----KYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       204 ----------~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~  266 (312)
                                +++|++++.|+.|++||++.+   +.+..+.+|.....++   .+.+++    .+|++|+.||.|++||+
T Consensus       169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v---~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV---AWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE---ECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE---EecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                      468999999999999999755   3455566777654443   233443    78999999999999998


Q ss_pred             Cchh----eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          267 QQKT----MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       267 ~~~~----~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ....    ....+.+|...|.+++|+|++++|++++.|  ++|+||+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D--~~v~lw~~~  292 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD--NKVTLWKES  292 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS--SCEEEEEEC
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC--CeEEEEEEC
Confidence            7621    223456788999999999999999999955  689999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.3e-38  Score=304.24  Aligned_cols=295  Identities=23%  Similarity=0.435  Sum_probs=249.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRI   90 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~   90 (312)
                      +...++.+|...|++++|+|++++|++++.|+.|++||..+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v  727 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL  727 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred             CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999  4568999999999999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee------------------------
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR------------------------  146 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~------------------------  146 (312)
                      ||+.++ .....+.+|.+.|.+++|+|+++.+++++.||.|++||+.+++....+.                        
T Consensus       728 wd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          728 WDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             EETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             EECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence            999875 5677788999999999999999999999999999999998765433221                        


Q ss_pred             -------------------------------ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459          147 -------------------------------AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       147 -------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                                                     .|...+.+++|+|+++++++++.++.|++||+.++.....+.. +...+
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-h~~~v  885 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWV  885 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC-CSSCE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC-Cccce
Confidence                                           4667789999999999999999999999999999887776654 55678


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEEcCCCcE-----------------------------EEEEEccCCc-----eeEEE
Q 021459          196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-----------------------------LKIYTGHTNK-----KYCIT  241 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------------------------~~~~~~~~~~-----~~~~~  241 (312)
                      ..+.|+|++++|++++.|+.|++||+.+...                             +.........     ...+.
T Consensus       886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            8899999999999999999999999753110                             0011111100     01133


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .....++++++++|+.+|.|.+||+.++.....+.+|...|.+++|+|++++|++++.|  ++|++|++.
T Consensus       966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--g~i~vwd~~ 1033 (1249)
T 3sfz_A          966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED--SVIQVWNWQ 1033 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS--SBEEEEETT
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC--CEEEEEECC
Confidence            34456789999999999999999999998888999999999999999999999999955  589999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-39  Score=276.19  Aligned_cols=254  Identities=24%  Similarity=0.467  Sum_probs=213.9

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccC-CCeEEEEcC
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSD-SHYICSASD   84 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~   84 (312)
                      +...++..|...|.+++|+|++++|++|+.|+.+++|++...       .....+.+|...|.++.|.|+ +..|++|+.
T Consensus        99 ~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~  178 (380)
T 3iz6_a           99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG  178 (380)
T ss_dssp             EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT
T ss_pred             ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC
Confidence            345677889999999999999999999999999999998643       233456789999999999997 457999999


Q ss_pred             CCeEEEEeCCCCceeeeee-----ecccccEEEEEEec-CCCEEEEeecCCcEEEEEcC-CCeEEEEeeecCcCeEEEEE
Q 021459           85 DRTLRIWDARTPFDCLKTL-----RGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVK-TGKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~  157 (312)
                      |+.|++||+.++. .+..+     .+|...|.+++|++ +++++++|+.|++|++||++ .++....+.+|...|.+++|
T Consensus       179 D~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~  257 (380)
T 3iz6_a          179 DQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF  257 (380)
T ss_dssp             TSCEEEECTTTCC-EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred             CCcEEEEEcCCCc-EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence            9999999998763 34333     57889999999987 78999999999999999998 45677788899999999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE-
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY-  230 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-  230 (312)
                      +|++++|++|+.|+.|++||++++..+..+....      .+.+..++|+|+|++|++|+.||.|++||...++.+..+ 
T Consensus       258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence            9999999999999999999999988766553321      123677899999999999999999999999988877766 


Q ss_pred             ---EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh
Q 021459          231 ---TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       231 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                         .+|.....++   ...+++.+|++|+.||.|++|++...+
T Consensus       338 ~~~~~h~~~v~~l---~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          338 TLQNSHEGRISCL---GLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSCSSCCCCCCEE---EECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cccCCCCCceEEE---EECCCCCEEEEeeCCCCEEEEecCCCc
Confidence               4566554444   345789999999999999999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-39  Score=277.40  Aligned_cols=281  Identities=19%  Similarity=0.333  Sum_probs=226.8

Q ss_pred             ceEEEEECCCCCE-EEEEeCCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCc
Q 021459           24 AVSCVKFSNDGTL-LASASLDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ....++++|+... +++++.||.|+||++....    .+..+.+|...|.+++|+| ++++|++|+.|+.|++||+.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4456888887764 4457889999999986542    3445678999999999999 89999999999999999997752


Q ss_pred             ------eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEe--eecCcCeEEEEEccCCCEEEEee
Q 021459           98 ------DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        98 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                            +.+..+.+|...|.+++|+|++ +++++++.||.|++||+++++....+  ..|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3466788999999999999998 69999999999999999999998888  78999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCEEEEE---ecCCeEEEEEcCCCcE-EEEEE-ccCCceeEEEE
Q 021459          169 HDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVG---TLDSTLKLWNYSAGKF-LKIYT-GHTNKKYCITS  242 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~  242 (312)
                      .|+.|++||+++++.+..+ ..+....+..+.|+|++.+|++|   +.|+.|++||+++++. +.... .+......   
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~---  272 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL---  272 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE---
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE---
Confidence            9999999999999888776 34444446778899999999999   7899999999987654 33332 23333222   


Q ss_pred             EEEccCCcEEE-EeecCCeEEEEECCchhe-eecccC--CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          243 TFSVTNGKYIV-SGSEDNCVYVWDLQQKTM-IQKLDG--HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       243 ~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ....+++++|+ +|+.||.|++||+.+++. +..+..  |...|.+++|+|++..+++    ++..+++|++.
T Consensus       273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s----~~~~~~~~~l~  341 (402)
T 2aq5_A          273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN----KCEIARFYKLH  341 (402)
T ss_dssp             EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG----GTEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee----cceeEEEEEcC
Confidence            23346777775 566899999999988763 444443  5589999999999988765    34589999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=273.85  Aligned_cols=285  Identities=15%  Similarity=0.220  Sum_probs=229.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---eEEEeee------------------------------------
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA---LVHRFVG------------------------------------   62 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~------------------------------------   62 (312)
                      ..++.+++|+|+|++|+++ .++.|++|++.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4578999999999977666 56799999998887   5555442                                    


Q ss_pred             ------------------ccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCC--CCceeeeeee--cccccEEEEEEecCC
Q 021459           63 ------------------HSEGISDLAWSSDSHYI-CSASDDRTLRIWDAR--TPFDCLKTLR--GHSDFVFCVNFNPQS  119 (312)
Q Consensus        63 ------------------~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~  119 (312)
                                        |...|.+++|+|++++| ++++.|+.|++||+.  ++ ..+..+.  .|...+.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCC
Confidence                              23369999999999986 899999999999998  53 4455554  567889999999999


Q ss_pred             CEEEEeecCCcEEEEEcCCCeEEE----EeeecCcCeEEEEEccC---CCEEEEeeCCCeEEEEeCCCCceeeEcccCCC
Q 021459          120 NLIVSGSFDESIRIWEVKTGKCTR----VIRAHSMPVTSVHFNRD---GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD  192 (312)
Q Consensus       120 ~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (312)
                      ++|++++.+|.|++|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...+.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence            999999999999999998876543    67789999999999999   99999999999999999999888777555566


Q ss_pred             CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccC----------------------CceeEEEEEEEccCCc
Q 021459          193 PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----------------------NKKYCITSTFSVTNGK  250 (312)
Q Consensus       193 ~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~  250 (312)
                      ..+..++|+ ++++|++++.|+.|++||+++++.+..+..+.                      .....+......++++
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            778889999 99999999999999999999999887776321                      1112233344557889


Q ss_pred             EEEEee-cCCeEEEEEC--Cch---heeecccCCccceEEEEEcCCCceEEEeee-c----CCeeEEEEeec
Q 021459          251 YIVSGS-EDNCVYVWDL--QQK---TMIQKLDGHTDSVISVTCHPTENKIASAGL-D----GDRTVRVWVQD  311 (312)
Q Consensus       251 ~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~-d----gd~~v~iw~~~  311 (312)
                      +|++++ .++.|++|++  ...   ..+..+..| ..|.+++|+|++ .+++++. +    ++..|.+|.++
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            999988 8999999999  554   566677777 889999999954 4444432 2    25568888765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.1e-38  Score=284.73  Aligned_cols=250  Identities=30%  Similarity=0.532  Sum_probs=212.6

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+.+.+|...|++++|+|++++|++|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCceee--eeeecccccEEEEEEecCC--CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           95 TPFDCL--KTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        95 ~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ......  ....+|...|.+++|+|++  ..+++++.|++|++||+++++....+..|...|++++|+|++++|++|+.|
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            532211  1224688899999999986  589999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc--------------
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK--------------  236 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------------  236 (312)
                      +.|++||+++++.+..+..  ...+..++|+|++.+|++++ ++.|++||+++++.+..+..+...              
T Consensus       583 g~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (694)
T 3dm0_A          583 GVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK  659 (694)
T ss_dssp             SBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred             CeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence            9999999999887766533  45688899999998877665 667999999998887765432211              


Q ss_pred             --eeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          237 --KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       237 --~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                        ...+....+.+++++|++|+.||.|++|++.
T Consensus       660 ~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence              0112333445789999999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=294.49  Aligned_cols=205  Identities=16%  Similarity=0.265  Sum_probs=176.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      .+|.+.|++++|+|++++||+|+.||.|++|+..+.+....+ .|...|.+++|+| +++|++++.|+.|++||+.++ +
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~   90 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-K   90 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-S
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-c
Confidence            489999999999999999999999999999998877665443 4788999999999 889999999999999999875 4


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE-----------EEeeecCcCeEEEEEccC-CCEEEE
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-----------RVIRAHSMPVTSVHFNRD-GSLIVS  166 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~  166 (312)
                      .+..+. |.+.|.+++|+|+++++++|+.||.|++||+++++..           ..+..|..+|.+++|+|+ +..+++
T Consensus        91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence            455554 6678999999999999999999999999999988753           123568889999999996 478999


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccC-----------------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDD-----------------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      |+.|+.| +||+++++....+..+                 +...+..++|+|+|++|++++.|+.|++||+++++.+.
T Consensus       170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            9999999 9999998877665432                 12558889999999999999999999999998877654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=263.66  Aligned_cols=251  Identities=21%  Similarity=0.323  Sum_probs=209.5

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC--CcceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS--SLALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRI   90 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~   90 (312)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++|++.  +.+.+..+.+|...|.+++|+++  +++|++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45788999999999999999999999999999999987  56677788899999999999987  899999999999999


Q ss_pred             EeCCCCc-eeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCe--EEEEeeecCcCeEEEEEcc------
Q 021459           91 WDARTPF-DCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSMPVTSVHFNR------  159 (312)
Q Consensus        91 wd~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~------  159 (312)
                      ||+.+.. ..+..+.+|...|.+++|+|+  ++.+++++.|+.|++||++++.  ....+..|...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9998753 256667789999999999999  8999999999999999998773  3445667889999999999      


Q ss_pred             -------CCCEEEEeeCCCeEEEEeCCCCcee---eEcccCCCCcEEEEEECCC---CCEEEEEecCCeEEEEEcCCCc-
Q 021459          160 -------DGSLIVSGSHDGTCKIWDAGEGACL---KTLIDDKDPAVSFAKFSPN---GKFILVGTLDSTLKLWNYSAGK-  225 (312)
Q Consensus       160 -------~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~-  225 (312)
                             ++.++++++.|+.|++||++++...   ......+...+..++|+|+   +.+|++++.||.|++||++.+. 
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~  243 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  243 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence                   6999999999999999999876432   1222345667888999999   8999999999999999998864 


Q ss_pred             --EEEEEEc--cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          226 --FLKIYTG--HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       226 --~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                        .......  +...   +....+.+++++|++++.||.|++|++..
T Consensus       244 ~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          244 PWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCEEEESSSSCCSSC---EEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             cceeeeeccccCCCc---EEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence              2222222  3333   33344557899999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.3e-37  Score=284.63  Aligned_cols=290  Identities=27%  Similarity=0.435  Sum_probs=243.0

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      .....+.+|..+|++++|+|++++|++++.||.|++|+..+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEcc--CCCEEEEee
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNR--DGSLIVSGS  168 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~  168 (312)
                      +.+.......+.+|...+.+++|+| +++.+++++.||.|++||+.+++....+..+. ..+.+++|+|  ++.++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            9876566778889999999999999 88899999999999999998887776666554 7899999999  999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      .||.|++||+.+++....+.. +...+..+.|+|+++++++++.||.|++||..+++.+..+..+.....++  .+ .++
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~-~~~  281 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--AT-HPT  281 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE--EE-CTT
T ss_pred             CCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE--EE-ccC
Confidence            999999999999887776644 45668889999999999999999999999999999888888776654443  23 355


Q ss_pred             Cc--EEEEeecCCeEEEEECCchheee-------------------------------------------cccCCccceE
Q 021459          249 GK--YIVSGSEDNCVYVWDLQQKTMIQ-------------------------------------------KLDGHTDSVI  283 (312)
Q Consensus       249 ~~--~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~h~~~v~  283 (312)
                      +.  +++++ .++.+.+|++.......                                           .+..+...+.
T Consensus       282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (814)
T 3mkq_A          282 GRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ  360 (814)
T ss_dssp             CGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred             CCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence            54  35554 56668888865322111                                           1123445678


Q ss_pred             EEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          284 SVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       284 ~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +++|+|+++++++++ |  +.+++|+.
T Consensus       361 ~~~~spdg~~la~~~-~--~~~~i~~~  384 (814)
T 3mkq_A          361 SLAHSPNGRFVTVVG-D--GEYVIYTA  384 (814)
T ss_dssp             EEEECTTSSEEEEEE-T--TEEEEEET
T ss_pred             eeEECCCCCEEEEec-C--CEEEEEEC
Confidence            999999999998887 3  57888875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-37  Score=286.15  Aligned_cols=287  Identities=11%  Similarity=0.172  Sum_probs=215.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      .|..+|.+++|+| +++|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+.+....
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            4788999999999 8899999999999999999998887775 7789999999999999999999999999999875321


Q ss_pred             e----------eeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeec------------------Cc
Q 021459          100 L----------KTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAH------------------SM  150 (312)
Q Consensus       100 ~----------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------------------~~  150 (312)
                      .          ..+.+|.+.|.+++|+|+ +..+++++.||.| +||+++++....+..|                  ..
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence            1          234678899999999996 4789999999999 9999999988877655                  46


Q ss_pred             CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE--cc---cC------------CCCcEEEEEEC----CCC-CEEE
Q 021459          151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT--LI---DD------------KDPAVSFAKFS----PNG-KFIL  208 (312)
Q Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~---~~------------~~~~~~~~~~~----~~~-~~l~  208 (312)
                      .|.+++|+|+|++|++++.|+.|++||+++++.+..  +.   .+            +...+..++|+    |++ .+|+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~  292 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI  292 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence            799999999999999999999999999998876542  21   01            12346667774    443 3455


Q ss_pred             EEecC-----CeEEEEEc--------------------------------------------------------------
Q 021459          209 VGTLD-----STLKLWNY--------------------------------------------------------------  221 (312)
Q Consensus       209 ~~~~d-----~~i~v~d~--------------------------------------------------------------  221 (312)
                      +|+.+     ..+++|++                                                              
T Consensus       293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~  372 (902)
T 2oaj_A          293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG  372 (902)
T ss_dssp             EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred             eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence            55444     25666663                                                              


Q ss_pred             ---------CCCcEEEE-------EEccCCceeEEEEE-------------------------------EEccCCcEEEE
Q 021459          222 ---------SAGKFLKI-------YTGHTNKKYCITST-------------------------------FSVTNGKYIVS  254 (312)
Q Consensus       222 ---------~~~~~~~~-------~~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~  254 (312)
                               .++.....       +..|.....++...                               ...+++++|++
T Consensus       373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS  452 (902)
T 2oaj_A          373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT  452 (902)
T ss_dssp             TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred             CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence                     11110000       00000111111110                               01246789999


Q ss_pred             eecCCeEEEEECCchheee--c----c-----cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          255 GSEDNCVYVWDLQQKTMIQ--K----L-----DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~~~~~--~----~-----~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |+.||+|++||+..+....  .    +     .+|...|.+|+|+|++++||+|+.|  ++|+||+++
T Consensus       453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D--gtV~lwd~~  518 (902)
T 2oaj_A          453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET--GDVVLFKYE  518 (902)
T ss_dssp             EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT--SCEEEEEEE
T ss_pred             ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC--cEEEEEEec
Confidence            9999999999998764211  1    1     1788999999999999999999955  599999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-37  Score=259.24  Aligned_cols=252  Identities=23%  Similarity=0.415  Sum_probs=207.8

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecC--CCEEEEeecCCcE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESI  131 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i  131 (312)
                      +++..+.+|...|.+++|+|++++|++++.|+.|++||+... ...+..+.+|.+.|.+++|+++  +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            445667899999999999999999999999999999998632 3456678889999999999977  8999999999999


Q ss_pred             EEEEcCCCe--EEEEeeecCcCeEEEEEccC--CCEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECC----
Q 021459          132 RIWEVKTGK--CTRVIRAHSMPVTSVHFNRD--GSLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSP----  202 (312)
Q Consensus       132 ~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~----  202 (312)
                      ++||+.+++  ....+..|...|.+++|+|+  +.++++++.|+.|++||++++.... .....+...+..+.|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999987  66677789999999999999  9999999999999999998874322 22334566788899999    


Q ss_pred             ---------CCCEEEEEecCCeEEEEEcCCCc----EEEEEEccCCceeEEEEEEEccC---CcEEEEeecCCeEEEEEC
Q 021459          203 ---------NGKFILVGTLDSTLKLWNYSAGK----FLKIYTGHTNKKYCITSTFSVTN---GKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       203 ---------~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~  266 (312)
                               ++.+|++++.|+.|++||++.+.    ....+.+|.....++   ...++   +.+|++++.||.|++||+
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~---~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV---AWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE---EECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE---EECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                     69999999999999999998765    334555666654433   34466   899999999999999999


Q ss_pred             Cchh-----eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          267 QQKT-----MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       267 ~~~~-----~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ....     .......|...|.+++|+|++++|++++.|  +.|++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i~iw~~~  286 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--NKVTLWKEN  286 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS--SSEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC--CcEEEEeCC
Confidence            8753     233344588899999999999999999965  689999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-36  Score=259.11  Aligned_cols=248  Identities=23%  Similarity=0.402  Sum_probs=212.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      |...|++++|+|++++|++|+.||.|++|+..+++.+..+.+|...|.+++|  ++++|++++.|+.|++||++......
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            8999999999999999999999999999999999999999999999999999  46799999999999999998666677


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEee--CCCeEEEEe
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGS--HDGTCKIWD  177 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~iwd  177 (312)
                      ..+.+|.+.|.+++|+|+++.+++++.|+.|++||+++++....+..|...|.+++|+|++. ++++++  .|+.|++||
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence            78889999999999999999999999999999999999998888888999999999999765 555554  799999999


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCCCcEEEE--EEccCCceeEEEEEEEccCCcEEE
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSAGKFLKI--YTGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      +.+++....+.  ....+..+.|+|++++++++  +.||.|++||+.+++....  +.+|......+   ...+++.+|+
T Consensus       291 ~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~---~~s~dg~~l~  365 (401)
T 4aez_A          291 AATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS---ALSPDGRILS  365 (401)
T ss_dssp             TTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE---EECTTSSEEE
T ss_pred             CCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE---EECCCCCEEE
Confidence            99988877664  34568889999999999994  4899999999998765544  45666654443   3457899999


Q ss_pred             EeecCCeEEEEECCchheeecc
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~  275 (312)
                      +++.||.|++||+.+++.+...
T Consensus       366 s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          366 TAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EECTTSEEEEEECCC-------
T ss_pred             EEeCCCcEEEEECCCCcccccc
Confidence            9999999999999887766554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-36  Score=252.51  Aligned_cols=256  Identities=16%  Similarity=0.256  Sum_probs=223.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-----Ce
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-----RT   87 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~   87 (312)
                      +...++.+|...|.+++|+|++++|++++.||.|++|++.+++.+..+. +...|.+++|+|+++++++++.+     +.
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence            4456788999999999999999999999999999999999998888777 88999999999999999999998     99


Q ss_pred             EEEEeCCCCce----------eeeeeecccc--cEEEEEEecCCCEEEEeecCCcEEEEEcCC-CeEEEEeeecCcCeEE
Q 021459           88 LRIWDARTPFD----------CLKTLRGHSD--FVFCVNFNPQSNLIVSGSFDESIRIWEVKT-GKCTRVIRAHSMPVTS  154 (312)
Q Consensus        88 v~~wd~~~~~~----------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~  154 (312)
                      |++||+.....          ....+..|..  .+.+++|+|+++.+++++.||.|++||+++ ++....+..|...|.+
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            99999864321          2334445555  899999999999999999999999999998 7888888889999999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC--------------eEEEEE
Q 021459          155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS--------------TLKLWN  220 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~i~v~d  220 (312)
                      ++|+|++++|++++.|+.|++||+++++....+.  ....+..+.|+|+++++++++.++              .+++||
T Consensus       224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             EEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            9999999999999999999999999988777664  445678889999999999999888              899999


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeec
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK  274 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (312)
                      ..+++.+..+.+|.....++   ...+++++|++++.||.|++|++........
T Consensus       302 ~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          302 KIFEEEIGRVQGHFGPLNTV---AISPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             TTTCCEEEEEECCSSCEEEE---EECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             cCCCcchhheecccCcEEEE---EECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence            99999999998887764443   3457899999999999999999987654433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-36  Score=259.44  Aligned_cols=260  Identities=22%  Similarity=0.405  Sum_probs=215.2

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      .+.+|...|++++|+|+|++|++|+.||.|++|++.+++.+..+.+|...+.+++++  +.+|++|+.|+.+++||....
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            345788899999999999999999999999999999999999999999999988774  679999999999999999887


Q ss_pred             ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE----EEEeeecCcCeEEEEEccCCC-EEEE--eeC
Q 021459           97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC----TRVIRAHSMPVTSVHFNRDGS-LIVS--GSH  169 (312)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~  169 (312)
                      ...+..+.+|...+..+.++|+++.+++++.|+.|++||..+++.    +.....|...|.+++|+|++. ++++  |+.
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~  299 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  299 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence            777788899999999999999999999999999999999987653    345667888999999999665 4444  568


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe--cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT--LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      |+.|++||+.++.....+..  ...+..+.|+|+++.+++++  .|+.|++||+.+++.+..+.+|...+.++   ...+
T Consensus       300 D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l---~~sp  374 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL---TMSP  374 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE---EECT
T ss_pred             CCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEE---EEcC
Confidence            99999999999988776643  34566777999999888765  78999999999999999999998875544   3457


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecccCCccceE
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVI  283 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  283 (312)
                      ++.+|++|+.||+|++||+.+.....+.+.+...+.
T Consensus       375 dg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~  410 (420)
T 4gga_A          375 DGATVASAAADETLRLWRCFELDPARRREREKASAA  410 (420)
T ss_dssp             TSSCEEEEETTTEEEEECCSCSSCC-----------
T ss_pred             CCCEEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence            899999999999999999987666555554544433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.4e-36  Score=248.45  Aligned_cols=252  Identities=30%  Similarity=0.508  Sum_probs=216.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ...+++.+|...|++++|+|++++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            34567889999999999999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCC--CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      +...........+|...+.+++|++++  ..+++++.|+.|++||+++++....+..|..+|++++|+|++++|++|+.|
T Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            987655556667899999999998865  578899999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc---------cCCceeEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG---------HTNKKYCIT  241 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~  241 (312)
                      +.|++||+++.+.+..+..  ...+..+.++|++.++ +++.|+.|++||++++..+..+..         |...   +.
T Consensus       237 g~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~---v~  310 (340)
T 4aow_A          237 GQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ---CT  310 (340)
T ss_dssp             CEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC---EE
T ss_pred             CeEEEEEeccCceeeeecC--CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC---EE
Confidence            9999999999888776643  3467888899987654 566799999999988876655432         3333   33


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchh
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                      .....+++++|++|+.||.|++||+++++
T Consensus       311 ~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          311 SLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            34455789999999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.9e-37  Score=262.10  Aligned_cols=253  Identities=15%  Similarity=0.223  Sum_probs=215.9

Q ss_pred             eeceeeecccccceEEEEECCC----C---CEEEEEeCCCeEEEEeCCCcce-----EEEeeec-----cCCEEEEEEc-
Q 021459           12 YRHFKTLTAHSRAVSCVKFSND----G---TLLASASLDKTVIIWSASSLAL-----VHRFVGH-----SEGISDLAWS-   73 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~----~---~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~v~~~~~~-   73 (312)
                      ......+.+|..+|++++|+|+    +   ++|++++.|+.|++|++.+++.     +..+..|     ...|.+++|+ 
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            4456778899999999999999    9   9999999999999999988876     7888888     5899999999 


Q ss_pred             ---cCCCe-EEEEcCCCeEEEEeCCC------Cceeee-----ee-------ecccccEEEEEEecCCCEEEEeecCCcE
Q 021459           74 ---SDSHY-ICSASDDRTLRIWDART------PFDCLK-----TL-------RGHSDFVFCVNFNPQSNLIVSGSFDESI  131 (312)
Q Consensus        74 ---~~~~~-l~~~~~d~~v~~wd~~~------~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~i  131 (312)
                         |++++ |++++.|+.|++||+.+      .. .+.     .+       ..|...+.+++|+|++ .+++++.||.|
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence               99999 99999999999999876      32 233     44       3478889999999999 99999999999


Q ss_pred             EEEEcCCCeEEEEeee---c---CcCeEEEEEccCCCEEEEeeCC---CeEEEEeCCCCceeeEcccC------------
Q 021459          132 RIWEVKTGKCTRVIRA---H---SMPVTSVHFNRDGSLIVSGSHD---GTCKIWDAGEGACLKTLIDD------------  190 (312)
Q Consensus       132 ~~wd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~------------  190 (312)
                      ++||+++++.+..+..   |   ..++.+++|+|++++|++++.|   +.|++||+++++.+..+...            
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            9999999999988888   8   8999999999999999999999   99999999998877776541            


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE------cc---------------CCceeEEEEEEEccCC
Q 021459          191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT------GH---------------TNKKYCITSTFSVTNG  249 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~~~  249 (312)
                      +...+..+.|+|++++|++++.|+.|++||+++++.+..+.      .|               ......+   .+.+++
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~---~~~~~g  366 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV---KFLKKG  366 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE---EEECTT
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE---Eecccc
Confidence            45678889999999999999999999999999999988888      65               4443333   334666


Q ss_pred             ----------cEEEEeecCCeEEEEECCch
Q 021459          250 ----------KYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       250 ----------~~l~~~~~dg~i~iwd~~~~  269 (312)
                                ++|++++.||.|++||+.++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      79999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.9e-38  Score=265.06  Aligned_cols=244  Identities=14%  Similarity=0.109  Sum_probs=196.1

Q ss_pred             eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459           60 FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT  138 (312)
Q Consensus        60 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~  138 (312)
                      ...+..+|.+++|+|++++|++++.|+.|++||+.+.. +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            34467889999999999999999999999999998653 56777889999999999999999999999999999999998


Q ss_pred             Ce---EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce---eeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          139 GK---CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC---LKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       139 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      ++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...+...+..++|+|++++|++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            76   5566778999999999999999999999999999999988763   45554436677899999999999999999


Q ss_pred             CCeEEEEEcCC------------------CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---
Q 021459          213 DSTLKLWNYSA------------------GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM---  271 (312)
Q Consensus       213 d~~i~v~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---  271 (312)
                      |+.|++||++.                  ++.+..+ .|.....+   ....+++++|++++.||.|++||+.+.+.   
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~---~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA---VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE---EEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE---EEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            99999999853                  2333344 55554333   34457899999999999999999998877   


Q ss_pred             -eecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          272 -IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       272 -~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                       +..+.+|...|.+++|+|++++|++++.|   .+.+|..
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~---~~~~~~~  279 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANESAIVAAGYNY---SPILLQG  279 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEETTEEEEEESSS---SEEEECC
T ss_pred             eeEeecCCCCceEEEEEcCCCCEEEEEcCC---cEEEEEe
Confidence             78889999999999999999999887633   3446654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-38  Score=270.55  Aligned_cols=272  Identities=14%  Similarity=0.246  Sum_probs=212.9

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCC---Cc--eeee
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSS-DSHYICSASDDRTLRIWDART---PF--DCLK  101 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~---~~--~~~~  101 (312)
                      .|+|++..+++++      .|+ .+++++..+ .+|...|++++|+| ++++|++|+.|+.|++||+.+   ..  ....
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4677777777654      377 456777777 88999999999999 999999999999999999864   21  1122


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC---CCeEEEEeee------------cCcCeEEEE--EccCCCEE
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK---TGKCTRVIRA------------HSMPVTSVH--FNRDGSLI  164 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l  164 (312)
                      . .+|...|.+++|+|+++.|++++.||.|++||+.   +++.......            +...+.++.  +++++.++
T Consensus       107 ~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 T-YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             E-EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             e-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            2 2589999999999999999999999999999994   5544443332            334455655  55789999


Q ss_pred             EEeeCCCeEEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE-ccCCceeEEEE
Q 021459          165 VSGSHDGTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT-GHTNKKYCITS  242 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~  242 (312)
                      ++++.|+.|++||+++++.+..+... +...+..++|+|++++|++++.||.|++||++.++.+..+. .+.....++..
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            99999999999999999888777653 45678889999999999999999999999999998888775 44433333221


Q ss_pred             E-EEccCCcEEEEeecCCeEEEEECCchheeecccC--------------------------CccceEEEEEcCCCceEE
Q 021459          243 T-FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG--------------------------HTDSVISVTCHPTENKIA  295 (312)
Q Consensus       243 ~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------h~~~v~~l~~~p~~~~l~  295 (312)
                      . ...+++.+|++|+.||.|++||+.+++.+..+.+                          |...|.+++|+ ++++|+
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            1 1124677999999999999999987765544432                          66778999999 778999


Q ss_pred             EeeecCCeeEEEEeec
Q 021459          296 SAGLDGDRTVRVWVQD  311 (312)
Q Consensus       296 ~~~~dgd~~v~iw~~~  311 (312)
                      +++.|  ++|++|++.
T Consensus       345 s~~~d--~~i~~wd~~  358 (437)
T 3gre_A          345 TDEAT--SSIVMFSLN  358 (437)
T ss_dssp             EEGGG--TEEEEEETT
T ss_pred             ecCCC--CeEEEEECC
Confidence            99966  599999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.7e-36  Score=251.40  Aligned_cols=245  Identities=18%  Similarity=0.215  Sum_probs=209.7

Q ss_pred             eeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC
Q 021459           61 VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG  139 (312)
Q Consensus        61 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  139 (312)
                      ..|..+|.+++|+|++++|++++.|+.|++||+.+.. +.+..+.+|...|.+++|+|+++++++++.||.|++||++++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            4588999999999999999999999999999987752 257778899999999999999999999999999999999988


Q ss_pred             eEEEEe--eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce---eeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459          140 KCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC---LKTLIDDKDPAVSFAKFSPNGKFILVGTLDS  214 (312)
Q Consensus       140 ~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
                      +....+  ..|...+.+++|+|+++++++++.|+.|++||+..+..   ...+...+...+..+.|+|++++|++++.|+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            755443  56888999999999999999999999999999987652   3344344567788999999999999999999


Q ss_pred             eEEEEEcC------------------CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          215 TLKLWNYS------------------AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       215 ~i~v~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      .|++||++                  .++.+..+..|.....++   ...+++++|++++.||.|++||+.+++.+..+.
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---CFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE---EECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            99999953                  567777777676654433   344788999999999999999999999999999


Q ss_pred             CCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          277 GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       277 ~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .|...|.+++|+|++.+++++   .|+.|++|++.
T Consensus       242 ~~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~  273 (372)
T 1k8k_C          242 SETLPLLAVTFITESSLVAAG---HDCFPVLFTYD  273 (372)
T ss_dssp             CSSCCEEEEEEEETTEEEEEE---TTSSCEEEEEE
T ss_pred             cCCCCeEEEEEecCCCEEEEE---eCCeEEEEEcc
Confidence            999999999999999877765   35689999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=263.46  Aligned_cols=262  Identities=11%  Similarity=0.080  Sum_probs=206.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      -...|.+++|+|||+++||++.|++|+  +...++   .+.+|...|.+++|+|+|       .++.+.+|+.+.. . .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~-~   79 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-G-L   79 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-C-S
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc-e-E
Confidence            457899999999999999999999999  644443   447899999999999999       4666666654321 1 2


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-----CeEEEEEccCCCEEEEeeCCCeEEE
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-----PVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      ..+ .|.+.|.+++|+|+|..|++++.||.|++||...  ++..+. |..     .+.+++|+|||++|++|+.||+|++
T Consensus        80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            222 4578899999999999999999999999999554  555566 665     4999999999999999999999999


Q ss_pred             EeCCCCce-------eeEcc---cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE---EEEEE-ccCCceeEEE
Q 021459          176 WDAGEGAC-------LKTLI---DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF---LKIYT-GHTNKKYCIT  241 (312)
Q Consensus       176 wd~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~-~~~~~~~~~~  241 (312)
                      ||+.++..       +..+.   ..+...+..++|+|+|  +++++.|+.|++||+.++..   ...+. +|......+.
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            99988752       34432   3345678899999999  88889999999999987763   24453 5554444443


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE--cCCCceEEEeeecCCeeEEEEeec
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC--HPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                        +.   +..||+++ +|.|++||+.++.......+|.+.|..++|  +|++..+++++.|  ++ ++|..+
T Consensus       234 --Fs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed--G~-klw~~d  296 (588)
T 2j04_A          234 --IV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT--SY-KVLLED  296 (588)
T ss_dssp             --EE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC--EE-EEEESS
T ss_pred             --EE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC--CC-EEEeec
Confidence              33   57888887 699999999887664444479999999999  9999999998855  57 999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-36  Score=255.30  Aligned_cols=240  Identities=22%  Similarity=0.420  Sum_probs=200.2

Q ss_pred             cccceEEEEECCC----CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCC
Q 021459           21 HSRAVSCVKFSND----GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        21 h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      |...|++++|+|+    +++|++|+.||.|++|+..+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999999    67999999999999999999999999999999999999999 899999999999999999987


Q ss_pred             Cceeeeee---ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--------------------------
Q 021459           96 PFDCLKTL---RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--------------------------  146 (312)
Q Consensus        96 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------------------------  146 (312)
                      . +.+..+   .+|...|.+++|+|+++.+++++.||.|++||+++++....+.                          
T Consensus       148 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          148 D-TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             T-EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             C-eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            5 445555   6799999999999999999999999999999998775443332                          


Q ss_pred             --ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce--------------eeEcccCCCCcEEEEEECCC--CCEEE
Q 021459          147 --AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC--------------LKTLIDDKDPAVSFAKFSPN--GKFIL  208 (312)
Q Consensus       147 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~l~  208 (312)
                        .|...|.+++|+  ++++++++.|+.|++||+++...              +..+. .+...+..++|+|+  +++|+
T Consensus       227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEE
T ss_pred             ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEE
Confidence              288899999998  67999999999999999887643              22222 23334556678888  99999


Q ss_pred             EEecCCeEEEEEcCCCc----EEEEEEcc--CCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          209 VGTLDSTLKLWNYSAGK----FLKIYTGH--TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +++.||.|++||+.+++    ....+..|  ...   +......+++++|++++.||.|++||+.
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA---IRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC---EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEecCCcEEEEECCCCCCccccceEEcccccCCc---eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999999998875    34456655  333   3333445789999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=253.92  Aligned_cols=267  Identities=12%  Similarity=0.098  Sum_probs=204.4

Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC--------ceeee
Q 021459           30 FSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP--------FDCLK  101 (312)
Q Consensus        30 ~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~--------~~~~~  101 (312)
                      +.+++++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.+++|+....        .+.+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            44678899999999999999999998877776  467888889888   999999999999976531        12122


Q ss_pred             ee-ecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459          102 TL-RGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus       102 ~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      .. .+|.+.|.+++|+|  +++++++++.||+|++||+++++...... .+...+.+++|+|++.++++|+.||.|++||
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            22 35668899999999  99999999999999999999998866553 3455799999999999999999999999999


Q ss_pred             CCCCcee-eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEE--EEEEEccCCcEEEE
Q 021459          178 AGEGACL-KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCI--TSTFSVTNGKYIVS  254 (312)
Q Consensus       178 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  254 (312)
                      +++++.. ..+...+...+..++|+|++.+|++++ ++.|++||+++++.+..+.........+  ......+++++|++
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence            9998877 555543667899999999999999999 5599999999876544333211111111  12334578999999


Q ss_pred             eec-CCeEEEEECCchheeecccCCccceEEEEEcC---CCceEEEeeecCCeeEEEE
Q 021459          255 GSE-DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP---TENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       255 ~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p---~~~~l~~~~~dgd~~v~iw  308 (312)
                      ++. |+.|++|++.........    .++..++|+|   +...+++++.||  .++++
T Consensus       278 ~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~--~~~~~  329 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG--GIAAI  329 (343)
T ss_dssp             EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETT--EEEEE
T ss_pred             ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCC--ceEEE
Confidence            988 999999998654432222    5677888888   777888888665  45544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-35  Score=251.36  Aligned_cols=242  Identities=14%  Similarity=0.255  Sum_probs=196.5

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeec---cCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGH---SEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+|...|.+++|+| ++++|++++.|+.|++|++.+ ..+..+..+   ...|.+++|+|++++|++++.|+.|++||+.
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            47999999999999 789999999999999999986 444455444   4789999999999999999999999999995


Q ss_pred             CCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCC----CeEEEEeeecCcCeEEEEEcc-CCCEEEEee
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKT----GKCTRVIRAHSMPVTSVHFNR-DGSLIVSGS  168 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  168 (312)
                        .+.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++    ++....+ .|...|.+++|+| ++++|++++
T Consensus       194 --~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          194 --GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             --SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             --CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence              346777889999999999999998 999999999999999987    5555555 6889999999999 999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCC----------------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDK----------------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      .|+.|++||++++.....+..+.                ...+..+.++|++++  +++.|+.|++||+.+++.+..+.+
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence            99999999998876654443211                122333456666665  667899999999999999888876


Q ss_pred             cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      +.... .+....+.+++++|++|+ ||.|++||+++
T Consensus       349 ~~~~~-~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          349 PNAAG-IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTBCS-CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCCc-eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            43111 122223457899999997 99999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=252.16  Aligned_cols=261  Identities=21%  Similarity=0.358  Sum_probs=209.0

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeC----CCCce-----eeeeeec--------
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDA----RTPFD-----CLKTLRG--------  105 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~----~~~~~-----~~~~~~~--------  105 (312)
                      ..+.+|+............|...|.+++|+|+++ +|++++.|+.|++||+    .++..     ....+..        
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            3456787776666555666779999999999999 9999999999999999    76541     2333332        


Q ss_pred             --ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          106 --HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       106 --~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                        |.+.|.+++|+|++++|++++.||.|++|| .+++....+..|..+|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence              677999999999999999999999999999 66777888889999999999999999999999999999999987665


Q ss_pred             eeEcc-------------------------------------------------------cCCCCcEEEEEECCCCCEEE
Q 021459          184 LKTLI-------------------------------------------------------DDKDPAVSFAKFSPNGKFIL  208 (312)
Q Consensus       184 ~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~~l~  208 (312)
                      ...+.                                                       ..+...+..++|+|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            43221                                                       12334577788999999999


Q ss_pred             EEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc
Q 021459          209 VGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       209 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  288 (312)
                      +++.|+.|++||+++++.+..+..|.....++  .+ .+++ .+++++.||.|++||+.+.+.+..+..|...|.+++|+
T Consensus       264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA--SW-VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEETTSCEEEECSSSBSCSEEECCCSSCEEEE--EE-ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccceEecCCCccEEEE--EE-CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            99999999999999988888887776654433  33 3566 99999999999999999999888999999999999999


Q ss_pred             CCCceEEEeeecCCeeEEEEeec
Q 021459          289 PTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       289 p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |++++|++++.|  +.|++|++.
T Consensus       340 ~~~~~l~~~~~d--g~i~i~~~~  360 (425)
T 1r5m_A          340 QDGQKYAVAFMD--GQVNVYDLK  360 (425)
T ss_dssp             TTSSEEEEEETT--SCEEEEECH
T ss_pred             CCCCEEEEEECC--CeEEEEECC
Confidence            999999999855  589999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=251.08  Aligned_cols=248  Identities=19%  Similarity=0.279  Sum_probs=203.9

Q ss_pred             cccccceEEEEECCC---CCEEEEEeCCCeEEEEeCCCcc-eEEEeeeccCCEEEEEE------ccCCCeEEEEcCCCeE
Q 021459           19 TAHSRAVSCVKFSND---GTLLASASLDKTVIIWSASSLA-LVHRFVGHSEGISDLAW------SSDSHYICSASDDRTL   88 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~---~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~v   88 (312)
                      .+|..+|++++|+|+   +++|++++.||.|++|++.+++ .+..+.+|...|.+++|      +|++++|++++.|+.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            379999999999998   6999999999999999999887 77888899999999954      6789999999999999


Q ss_pred             EEEeCCCCceeeeeeecccc----cEEEEE----EecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-
Q 021459           89 RIWDARTPFDCLKTLRGHSD----FVFCVN----FNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-  159 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~----~v~~~~----~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-  159 (312)
                      ++||+.+....+..+..|.+    .+.+++    |+|+++++++++.||.|++||+++++... ...|...+.+++|+| 
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~  220 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRK  220 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCS
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCC
Confidence            99999876545555655443    788888    67899999999999999999999988644 456888999999999 


Q ss_pred             --CCCEEEEeeCCCeEEEEeCCCCceeeEcc----cCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCC--------
Q 021459          160 --DGSLIVSGSHDGTCKIWDAGEGACLKTLI----DDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAG--------  224 (312)
Q Consensus       160 --~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~--------  224 (312)
                        ++.++++++.||.|++||+++++....+.    ..+...+..+.|+|+++ +|++++.||.|++||++.+        
T Consensus       221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  300 (357)
T 3i2n_A          221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS  300 (357)
T ss_dssp             SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred             CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence              99999999999999999998765543332    24566788899999998 8999999999999999754        


Q ss_pred             -----------cEEEEEEccCCceeEEEEEEEccCCcEEE-EeecCCeEEEEECCchh
Q 021459          225 -----------KFLKIYTGHTNKKYCITSTFSVTNGKYIV-SGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       225 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~  270 (312)
                                 +.+..+..|.....+   ..+.+++++|+ +++.||.|++||+.+.+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          301 EGIEMGVAGSVSLLQNVTLSTQPISS---LDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TSCCCCCCCEEEEEEEEECCSSCEEE---EEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCCccccccccceeeccccCCCCeeE---EEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                       245566667665443   33457788887 89999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.2e-35  Score=252.37  Aligned_cols=248  Identities=22%  Similarity=0.407  Sum_probs=204.5

Q ss_pred             EEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCC---------ceeeeeeecccccEEEEEEecCCC-EEEEee
Q 021459           58 HRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTP---------FDCLKTLRGHSDFVFCVNFNPQSN-LIVSGS  126 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~  126 (312)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+...         ...+..+.+|...+.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999997 689999999999999998651         345667788999999999999988 999999


Q ss_pred             cCCcEEEEEcCCCeE-------EEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCC---ceeeEcccCCCCcE
Q 021459          127 FDESIRIWEVKTGKC-------TRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEG---ACLKTLIDDKDPAV  195 (312)
Q Consensus       127 ~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~  195 (312)
                      .||.|++||+..+..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   .....+ ..+...+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-ECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-ecCCCCe
Confidence            999999999987422       345667889999999999 7789999999999999999976   334333 3455678


Q ss_pred             EEEEECCCCC-EEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCC-cEEEEeecCCeEEEEECCc----
Q 021459          196 SFAKFSPNGK-FILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNG-KYIVSGSEDNCVYVWDLQQ----  268 (312)
Q Consensus       196 ~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~----  268 (312)
                      ..++|+|++. ++++|+.||.|++||++. ...+..+..|.....++  .+. +++ .+|++++.||.|++||+..    
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i--~~s-p~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWS-PHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE--EEC-SSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE--EEC-CCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            8999999987 688999999999999987 45677777777664443  333 555 5799999999999999976    


Q ss_pred             ----------hheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEEeec
Q 021459          269 ----------KTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       269 ----------~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw~~~  311 (312)
                                .+.+..+.+|...|.+++|+|+++ .|++++.  |+.|++|+++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--dg~i~iw~~~  409 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE--DNIMQVWQMA  409 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET--TSEEEEEEEC
T ss_pred             cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC--CCCEEEeEcc
Confidence                      255667788999999999999998 7788874  5699999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.2e-37  Score=259.64  Aligned_cols=240  Identities=16%  Similarity=0.147  Sum_probs=175.1

Q ss_pred             ccCCCeEEEEcCCCeEEEEeCCCCce----eeeeeecccccEEEEEEec--------CCCEEEEeecCCcEEEEEcCCCe
Q 021459           73 SSDSHYICSASDDRTLRIWDARTPFD----CLKTLRGHSDFVFCVNFNP--------QSNLIVSGSFDESIRIWEVKTGK  140 (312)
Q Consensus        73 ~~~~~~l~~~~~d~~v~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~i~~wd~~~~~  140 (312)
                      .+++.+|++++.|++|++||.+++..    .+..+.+|.+.|.+++|+|        |+++|++++.|++|++||++++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            34566899999999999999876532    2345678999999999998        78899999999999999999988


Q ss_pred             EEEEeeecCcCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEccc------------------------CCCCcE
Q 021459          141 CTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLID------------------------DKDPAV  195 (312)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~  195 (312)
                      ....+..|..++.+++|+|++. +|++++.|+.|++||+++++.......                        .+...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            8888888999999999999874 799999999999999987754332210                        112223


Q ss_pred             EEEEE-CCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCcee----------------EEEEEEEcc-CCcEEEEeec
Q 021459          196 SFAKF-SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY----------------CITSTFSVT-NGKYIVSGSE  257 (312)
Q Consensus       196 ~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~l~~~~~  257 (312)
                      ..+.| .|+++.+++++.|+++++||+..+.....+..+.....                .+...+.++ ++.++++|+.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            33444 58999999999999999999987765544433322111                011122222 4456788999


Q ss_pred             CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       258 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      ||.|++||+.+++....+.+|..+|.+|+|+|+|++||+++.||-..++++.+.|
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~gf~~  392 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMGFTR  392 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGGGCC
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeCccc
Confidence            9999999999988888888899999999999999999999976544455554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=274.99  Aligned_cols=253  Identities=23%  Similarity=0.342  Sum_probs=197.1

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC--CcceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS--SLALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIW   91 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~w   91 (312)
                      ..+.+|.++|++++|+|++++|++|+.||.|++|+..  +.+.+..+.+|...|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4678999999999999999999999999999999987  55677788899999999999988  9999999999999999


Q ss_pred             eCCCCc-eeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCe--EEEEeeecCcCeEEEEEcc-------
Q 021459           92 DARTPF-DCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSMPVTSVHFNR-------  159 (312)
Q Consensus        92 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~~~-------  159 (312)
                      |+.++. .....+.+|...|.+++|+|+  ++.+++++.||.|++||++++.  ....+..|...|.++.|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            998753 256667789999999999999  9999999999999999998773  3445667889999999999       


Q ss_pred             ------CCCEEEEeeCCCeEEEEeCCCCce----eeEcccCCCCcEEEEEECCC---CCEEEEEecCCeEEEEEcCCCcE
Q 021459          160 ------DGSLIVSGSHDGTCKIWDAGEGAC----LKTLIDDKDPAVSFAKFSPN---GKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       160 ------~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                            ++.++++|+.||.|++||++++..    ...+ ..+...+..++|+|+   +.+|++++.||.|++||++++..
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                  589999999999999999987632    2222 334566777888888   78888888888888888765421


Q ss_pred             EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      ..                                        ........+|...|.+++|+|+++++++++.|  +.|+
T Consensus       242 ~~----------------------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D--g~I~  279 (753)
T 3jro_A          242 PW----------------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGD--NKVT  279 (753)
T ss_dssp             CC----------------------------------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSS--SCEE
T ss_pred             cc----------------------------------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCC--CEEE
Confidence            00                                        00112223455666677777777777766643  4677


Q ss_pred             EEeec
Q 021459          307 VWVQD  311 (312)
Q Consensus       307 iw~~~  311 (312)
                      +|+++
T Consensus       280 vwd~~  284 (753)
T 3jro_A          280 LWKEN  284 (753)
T ss_dssp             CCBCC
T ss_pred             EEecC
Confidence            77653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=264.19  Aligned_cols=205  Identities=12%  Similarity=0.103  Sum_probs=175.6

Q ss_pred             eeecccccceEEEEECCC------CCEEEEEeCCCeEEEEeCCCcce-----------EEEeeeccCCEEEEEEccCCCe
Q 021459           16 KTLTAHSRAVSCVKFSND------GTLLASASLDKTVIIWSASSLAL-----------VHRFVGHSEGISDLAWSSDSHY   78 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~------~~~l~t~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~   78 (312)
                      .++.+|.+.|.+++|+|+      +.+||+++.||+|++|++..+..           ...+.+|...|.+++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            346678899999999997      57999999999999999976531           23567899999999999864 8


Q ss_pred             EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE--EEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCc--CeE
Q 021459           79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV--NFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSM--PVT  153 (312)
Q Consensus        79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~  153 (312)
                      |++|+.||+|++||++++......+.+|.+.|.++  .|+|++ ++|++++.|++|++||++++++...+..|..  .+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            99999999999999987544455678999999999  568887 8999999999999999998887766666653  478


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          154 SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      +++|+|+++.+++++.|+.|++||++++.....+.. +...+..++|+|++++|++|+.|++|++||..
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            999999999999999999999999999887766654 56678889999999999999999999999863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.2e-35  Score=254.17  Aligned_cols=250  Identities=24%  Similarity=0.415  Sum_probs=208.4

Q ss_pred             eeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCC----------cceEEEeeeccCCEEEEEEccCCC-eEEEEc
Q 021459           16 KTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASS----------LALVHRFVGHSEGISDLAWSSDSH-YICSAS   83 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   83 (312)
                      .....|.+.|++++|+|+ +.+|++++.||.|++|++..          ...+..+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            455689999999999997 67999999999999999876          566778889999999999999988 999999


Q ss_pred             CCCeEEEEeCCCCce------eeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCC---eEEEEeeecCcCeE
Q 021459           84 DDRTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTG---KCTRVIRAHSMPVT  153 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~  153 (312)
                      .||.|++||+.....      ....+.+|...|.+++|+| ++..+++++.||.|++||++++   +....+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999976321      1345668999999999999 6789999999999999999977   46667778999999


Q ss_pred             EEEEccCCC-EEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCC-------
Q 021459          154 SVHFNRDGS-LIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSA-------  223 (312)
Q Consensus       154 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-------  223 (312)
                      +++|+|++. ++++|+.||.|++||+++. ..+..+. .+...+..+.|+|+++ +|++++.|+.|++||+..       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            999999887 6889999999999999984 4444443 3556788899999985 689999999999999976       


Q ss_pred             -------CcEEEEEEccCCceeEEEEEEEccCCc-EEEEeecCCeEEEEECCch
Q 021459          224 -------GKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       224 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  269 (312)
                             ...+..+.+|......+   .+.+++. +|++++.||.|++|++...
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~---~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDF---SWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEE---EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcCCCCCCceEE---EECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   24556666666554333   3346677 8999999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.9e-36  Score=254.74  Aligned_cols=250  Identities=20%  Similarity=0.356  Sum_probs=205.8

Q ss_pred             ceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccCC-CeEEEEcC
Q 021459           14 HFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSDS-HYICSASD   84 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~   84 (312)
                      ....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++       +.+..+.+|...|.+++|+|++ ++|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            3456788999999999999 9999999999999999999887       5567888999999999999998 69999999


Q ss_pred             CCeEEEEeCCCCceeeeee--ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-eecCcC-eEEEEEccC
Q 021459           85 DRTLRIWDARTPFDCLKTL--RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMP-VTSVHFNRD  160 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~~~~  160 (312)
                      |+.|++||+.++ +.+..+  .+|.+.|.+++|+|+++.|++++.||.|++||+++++.+..+ ..|... +..+.|+|+
T Consensus       153 dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          153 DNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             TSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred             CCEEEEEECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence            999999999875 556666  789999999999999999999999999999999999988887 677665 899999999


Q ss_pred             CCEEEEe---eCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEE-EecCCeEEEEEcCCCcE-EEEEEccC
Q 021459          161 GSLIVSG---SHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKF-LKIYTGHT  234 (312)
Q Consensus       161 ~~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~-~~~~~~~~  234 (312)
                      ++++++|   +.|+.|++||+++... ...........+..+.|+|++++|++ ++.|+.|++||+.+++. +..+..+.
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence            9999999   7999999999987654 22222234455777889999999975 55799999999998873 44444332


Q ss_pred             --CceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          235 --NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       235 --~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                        .....+   ...+++.+++  +.++.+++|++.++
T Consensus       312 ~~~~v~~~---~~sp~~~~~~--s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          312 SKESQRGM---GYMPKRGLEV--NKCEIARFYKLHER  343 (402)
T ss_dssp             CSSCCSEE---EECCGGGSCG--GGTEEEEEEEEETT
T ss_pred             cCCcccce---EEecccccce--ecceeEEEEEcCCC
Confidence              333333   3346677765  45679999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.4e-34  Score=244.68  Aligned_cols=286  Identities=14%  Similarity=0.167  Sum_probs=228.2

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-----EeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-----RFVGHSEGISDLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      ...+..+ ..+.+++|+|++.++++++.++.|++||..+++...     .+.+|...|.+++|+++++++++++.|+.|+
T Consensus       116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH  194 (433)
T ss_dssp             EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred             EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence            3334444 345689999988888888889999999999988776     3446788999999999999999999999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      +||+.+. +.+..+..|...+.+++|+|+++.++ +++.++.|++||+++++....+..+ ..+.+++|+|+++.+++++
T Consensus       195 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          195 VFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEE
T ss_pred             EEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEE
Confidence            9999875 45666777888999999999999875 4457899999999999887776654 4589999999999999888


Q ss_pred             --------CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEE-EEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          169 --------HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFI-LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       169 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                              .|+.|++||+.+++....+..  ...+..++|+|+++.+ ++++.++.|++||+.+++.+..+.. ..... 
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~-  348 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-FDKPN-  348 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEE-
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC-CCCCC-
Confidence                    488999999998876655422  2346678899999755 5568899999999998888776653 33322 


Q ss_pred             EEEEEEccCCcEEEEeec---------------CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          240 ITSTFSVTNGKYIVSGSE---------------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                        .....++++++++++.               ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. ++++
T Consensus       349 --~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~d~~  424 (433)
T 3bws_A          349 --TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF-LDHQ  424 (433)
T ss_dssp             --EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET-TTTE
T ss_pred             --eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC-CCCe
Confidence              2334477888877766               57999999998888877765 457899999999999987764 2579


Q ss_pred             EEEEeec
Q 021459          305 VRVWVQD  311 (312)
Q Consensus       305 v~iw~~~  311 (312)
                      |++|+++
T Consensus       425 i~v~~~~  431 (433)
T 3bws_A          425 IRVYRRD  431 (433)
T ss_dssp             EEEEEET
T ss_pred             EEEEEec
Confidence            9999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=232.94  Aligned_cols=249  Identities=21%  Similarity=0.333  Sum_probs=210.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR   89 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~   89 (312)
                      .....+..|...|.+++|+|++++|++++.|+.+++|++...   +.+..+.+|...|.+++|  +++++++++.|+.|+
T Consensus        50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~  127 (313)
T 3odt_A           50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence            344567789999999999999999999999999999998654   556778889999999999  577999999999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeee-cCcCeEEEEEccCCCEEEEe
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRA-HSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  167 (312)
                      +||.   ......+..|...+.++.|.| +++.+++++.||.|++||  .++....+.. |...+.+++|+|++. ++++
T Consensus       128 ~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~  201 (313)
T 3odt_A          128 VWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISC  201 (313)
T ss_dssp             EEET---TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEE
T ss_pred             EEcC---CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEc
Confidence            9992   355667788999999999988 899999999999999999  4455666665 888999999999998 9999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      +.|+.|++||+++++.+..+.. +...+..++|+|++ .|++++.|+.|++||+++++.+..+..+......+   ...+
T Consensus       202 ~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~---~~~~  276 (313)
T 3odt_A          202 SNDGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV---DCMS  276 (313)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE---EECT
T ss_pred             cCCCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE---EEcc
Confidence            9999999999999888777654 45678889999999 58899999999999999999998888887654333   3446


Q ss_pred             CCcEEEEeecCCeEEEEECCchheeecc
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~  275 (312)
                      +++ +++++.||.|++||+.+++.....
T Consensus       277 ~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          277 NGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             TSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             CCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            676 667999999999999887665443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.7e-35  Score=253.01  Aligned_cols=246  Identities=15%  Similarity=0.330  Sum_probs=197.2

Q ss_pred             eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce----------eeeeeeccc------------ccEEEEEEecCC
Q 021459           62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD----------CLKTLRGHS------------DFVFCVNFNPQS  119 (312)
Q Consensus        62 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~----------~~~~~~~~~------------~~v~~~~~~~~~  119 (312)
                      .+.+.|.+++|+|++++|++|+.||.|++||+.+...          ....+.+|.            +.|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            3678999999999999999999999999999876431          466778898            889999999998


Q ss_pred             --CEEEEeecCCcEEEEEcCCCeEE---------------------------------------EE-eeecCcCeEEEEE
Q 021459          120 --NLIVSGSFDESIRIWEVKTGKCT---------------------------------------RV-IRAHSMPVTSVHF  157 (312)
Q Consensus       120 --~~l~s~~~dg~i~~wd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~  157 (312)
                        ..+++++.|+.|++||+.+++..                                       .. ...|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999764432                                       12 3568899999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCC-ceeeEc------ccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcE---
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEG-ACLKTL------IDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKF---  226 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~---  226 (312)
                      +|++++|++| .|+.|++||+++. +....+      ...+...+..++|+|++ .+|++++.|+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 7999999999843 333321      33456678899999998 9999999999999999998876   


Q ss_pred             -EEEEEccCCce---------eEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeecccCCccc--------------
Q 021459          227 -LKIYTGHTNKK---------YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDS--------------  281 (312)
Q Consensus       227 -~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~--------------  281 (312)
                       +..+..+....         ..+......+++++|++++. |.|++||+.. ++.+..+.+|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             67777665410         01333444578999999999 9999999987 7778888888642              


Q ss_pred             -eEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          282 -VISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       282 -v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                       +..++|+|++++|++++.|  ++|++|+..
T Consensus       344 ~~~~~~~s~~~~~l~s~s~d--g~v~iwd~~  372 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYN--NFFRMFDRN  372 (447)
T ss_dssp             CCCCEEECTTSSEEEEECST--TEEEEEETT
T ss_pred             cceEEEECCCCCEEEEeccC--CEEEEEEcC
Confidence             3349999999999999955  599999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.2e-34  Score=238.24  Aligned_cols=278  Identities=12%  Similarity=0.146  Sum_probs=204.9

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWD   92 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd   92 (312)
                      .+.++..|...|++++|+|||++|++|+.++ +++|+..+++......  ...+..+++.++++.+ ++++.|+.|++||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            3445678999999999999999999988775 7899998876654433  2357788899988877 5677889999999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEE--eeC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVS--GSH  169 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~  169 (312)
                      ..++ +.+..+. +...|.+++++++.  ++.+ .++.|++||+.++ +.+..+..   +...+++++  .+++.  |+.
T Consensus        88 ~~~~-~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A           88 DVKK-QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             TTTT-EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC
T ss_pred             CCCC-cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc
Confidence            9875 4455554 56789999998763  4433 4789999999988 65555544   444566777  45555  689


Q ss_pred             CCeEEEEeCCCCc----------------eeeEcccCCCCcEEEEEECCCCCEEEEEecCCe-EEEEEcCCCcEEEEEE-
Q 021459          170 DGTCKIWDAGEGA----------------CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST-LKLWNYSAGKFLKIYT-  231 (312)
Q Consensus       170 d~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~-  231 (312)
                      +|.|++||+.++.                ....+ ..+...+..++|+|++++|++++.|++ |++||+++++.+..+. 
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~  236 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR  236 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            9999999998764                13333 445677899999999999999999998 9999999999998887 


Q ss_pred             c-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee--eccc---------------------CCccceEEEEE
Q 021459          232 G-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI--QKLD---------------------GHTDSVISVTC  287 (312)
Q Consensus       232 ~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---------------------~h~~~v~~l~~  287 (312)
                      + |.....+   ..+.+++++|++++.||.|++||+......  ..+.                     .+......++|
T Consensus       237 g~h~~~v~~---~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (355)
T 3vu4_A          237 GLDRADVVD---MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW  313 (355)
T ss_dssp             TTCCSCEEE---EEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred             CCCCCcEEE---EEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence            4 6665443   344578999999999999999999654211  1111                     11223467899


Q ss_pred             cCCCceEEEeeecCCeeEEEEee
Q 021459          288 HPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       288 ~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +|+++.+++++.  |+++++|++
T Consensus       314 ~~d~~~l~~~~~--dg~~~~~~~  334 (355)
T 3vu4_A          314 ISESSLVVVWPH--TRMIETFKV  334 (355)
T ss_dssp             SSSSEEEEEETT--TTEEEEEEE
T ss_pred             eCCCCEEEEEeC--CCeEEEEEE
Confidence            999999999985  468999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=244.74  Aligned_cols=284  Identities=19%  Similarity=0.371  Sum_probs=201.3

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCC
Q 021459           19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+|...|.+++|+| ++++|++++.||.|++|++.+++....+. +...+.++.|++.   +.++++++.|+.|++||+.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            35999999999999 77899999999999999999988776665 7788999999985   4499999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCe-EEEEe---------------eecCcCeEEEEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGK-CTRVI---------------RAHSMPVTSVHF  157 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~-~~~~~---------------~~~~~~v~~~~~  157 (312)
                      ++ +.+..+.+|...|.+++|+|+++ .+++++.||.|++||++++. ....+               ..|...|.+++|
T Consensus       175 ~~-~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          175 SG-SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SS-CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             Cc-ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            75 55677888999999999999998 58999999999999998764 23333               467888999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC----CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD----KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      +|+++++++++.|+.|++||+.+++........    .............+..+++++.++.|++||+.+++.+..+.+|
T Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            999999999999999999999987654433211    1111222223344566777788999999999999999999888


Q ss_pred             CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .....++   ...+++.+|++|+.||.|++||+.+.+.+.....+.   ....+.|......+. .++++.+++|...
T Consensus       334 ~~~v~~~---~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~W~~~  404 (408)
T 4a11_B          334 YKTVDCC---VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSS-SDEEGGTSAWSHP  404 (408)
T ss_dssp             SSCEEEE---EEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred             CCeEEEE---EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecc-cCccCceeecCCc
Confidence            7765444   334789999999999999999999887765544332   223444433333222 2356799999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-35  Score=255.11  Aligned_cols=252  Identities=17%  Similarity=0.266  Sum_probs=194.0

Q ss_pred             eeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeec--cCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           15 FKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGH--SEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|++||+.+.........+  ...+.+++|+|++++|++|+.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            345678999999999998 7899999999999999999876543333322  3457899999999999999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEE---EeeecCcCeEEEEEccCCCEEEEe
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTR---VIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      |++.  +.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++.+...   ....|..+|++++|+|++++|+++
T Consensus       237 d~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          237 NMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             ESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             ccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence            9865  34667789999999999999876 78899999999999998765433   235688999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccCCCC-----cEEEEEECCCCCEEEEEe------------cCCeEEEEEcCCCcEEEEE
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDDKDP-----AVSFAKFSPNGKFILVGT------------LDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~  230 (312)
                      +.|+.|++||++++.....+..+...     ......|+|++..++++.            .++.|++||..+++.+..+
T Consensus       315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999999999988766554332211     111234677776666653            2357999999999887776


Q ss_pred             E-ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459          231 T-GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  271 (312)
                      . .|.....++  ..+.+++.+|++|+ |+.|+|||+++++.
T Consensus       395 ~~~~~~~v~s~--~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          395 YDPESSGISSL--NEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCSSCCCCCCE--EEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             eCCCCCcEEEE--EEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            4 344433332  23457899999876 78999999987653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=231.37  Aligned_cols=245  Identities=22%  Similarity=0.416  Sum_probs=208.1

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      +.+|...|++++|+|++++|++|+.||.|++|+..+++.+..+.+|...+.++.+  ++..+++++.++.+++|+.....
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc
Confidence            4568889999999999999999999999999999999999999999988876554  56799999999999999988877


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE----EEEeeecCcCeEEEEEccCCCEE---EEeeCC
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC----TRVIRAHSMPVTSVHFNRDGSLI---VSGSHD  170 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d  170 (312)
                      ..+..+.+|...+.++.+.++++++++++.|+.|++||+++++.    ......+...+..+.++|++..+   ++++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            77788889999999999999999999999999999999987653    23445577789999999976533   467788


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe--cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT--LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      +.|++||...........  ....+..+.++|+++.+++++  .|+.|++||+++++.+..+.+|.....++   ...++
T Consensus       221 ~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l---~~spd  295 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL---TMSPD  295 (318)
T ss_dssp             CEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE---EECTT
T ss_pred             CEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE---EEcCC
Confidence            999999998877665443  344577788999999887764  78999999999999999999998875554   34578


Q ss_pred             CcEEEEeecCCeEEEEECCch
Q 021459          249 GKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      +++|++|+.||.|++||+.+.
T Consensus       296 g~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          296 GATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SSCEEEEETTTEEEEECCSCC
T ss_pred             CCEEEEEecCCeEEEEECCCC
Confidence            999999999999999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-34  Score=247.97  Aligned_cols=259  Identities=27%  Similarity=0.544  Sum_probs=206.1

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      +....+.+|...|.+++|  ++++|++|+.||.|++||..+++.+..+.+|...|.+++|+  +.++++|+.|+.|++||
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence            345677899999999998  78899999999999999999999999999999999999996  45999999999999999


Q ss_pred             CCCCcee--eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           93 ARTPFDC--LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      +.+....  ...+.+|...|.+++|  +++.+++++.||.|++||+++++.+..+..|...+.++.+  +++++++|+.|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~d  315 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD  315 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCC
Confidence            9875332  2567789999999998  6789999999999999999999999999999999999998  46799999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---------EEEEEEccCCceeEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---------FLKIYTGHTNKKYCIT  241 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~  241 (312)
                      |.|++||+++++.+..+.. +...+..+.+  ++.+|++|+.||.|++||+.++.         .+..+.+|.....++.
T Consensus       316 g~i~iwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  392 (435)
T 1p22_A          316 NTIRLWDIECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  392 (435)
T ss_dssp             SCEEEEETTTCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             CeEEEEECCCCCEEEEEeC-CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence            9999999999988877654 4455776666  78899999999999999997665         7777888877665553


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  288 (312)
                      .     ++.+|++|+.||.|++||+.+........ ...+..++.|.
T Consensus       393 ~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          393 F-----DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             E-----CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             e-----CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence            2     57889999999999999998765443322 22334444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.5e-34  Score=241.26  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=171.8

Q ss_pred             ccccceEEEEECCCCCEEEEE--eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           20 AHSRAVSCVKFSNDGTLLASA--SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      .+...+.+++|||||++++++  +.|++|++||..+++.+..+. |...|.+++|+|+|++|++++.++ +++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence            355678999999999987654  478999999999999887775 778899999999999999998665 5566555543


Q ss_pred             ee-eeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeE----EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           98 DC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKC----TRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        98 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      .. .....+|...+.+++|+|+++.+++++.++    .+++||+.....    ...+..|..+|++++|+|+|++|++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            33 234567888999999999999999999887    588899876653    235567888999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      .|+.|++||+++++.+..+...+...+..++|+|||++|++++.|++|+|||+...
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999888876667788999999999999999999999999998643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=254.12  Aligned_cols=247  Identities=13%  Similarity=0.118  Sum_probs=200.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC-----CEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSE-----GISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .|...|.+++|||+|.+||+++.||.+++|+..+  ++..+. |..     .|.+++|+|+|++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999654  555556 655     59999999999999999999999999998


Q ss_pred             CCce------eeeee----ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---EEEe-eecCcCeEEEEEccC
Q 021459           95 TPFD------CLKTL----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---TRVI-RAHSMPVTSVHFNRD  160 (312)
Q Consensus        95 ~~~~------~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~-~~~~~~v~~~~~~~~  160 (312)
                      +...      .+..+    .+|.+.|.+++|+|++  +++++.|++|++||+..++.   ...+ ..|...|.+++|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            7531      24554    6678899999999999  88889999999999987763   2445 3678899999999  


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEE--CCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCcee
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKF--SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      ++.+++++ ++.|++||+.+++......+ +...+..+.+  +|++..++++..||+ ++|....               
T Consensus       236 g~~LASa~-~~tIkLWd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---------------  297 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---------------  297 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---------------
T ss_pred             CCEEEEEe-CCeEEEEECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---------------
Confidence            57888887 69999999988776333323 5566777899  999999999999999 9998761               


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                       +  . ..+++..+++.  |+++++|+...+. ...+++ ...|.+++++|+|+.+|+++.
T Consensus       298 -~--~-~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          298 -L--H-VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             -E--E-EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             -E--E-ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence             1  1 23566666553  9999999875443 445555 778999999999999998874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.6e-34  Score=238.20  Aligned_cols=241  Identities=14%  Similarity=0.128  Sum_probs=199.0

Q ss_pred             eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEc
Q 021459           60 FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEV  136 (312)
Q Consensus        60 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~  136 (312)
                      ..+|...|.+++|+|++++|++++.|+.|++||+.+..  .......+|...|.+++|+|+++ ++++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            35799999999999999999999999999999987653  12445568999999999999999 9999999999999999


Q ss_pred             -CCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC---------CceeeEcccCCCCcEEEEEECCCC
Q 021459          137 -KTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE---------GACLKTLIDDKDPAVSFAKFSPNG  204 (312)
Q Consensus       137 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
                       .+++. ..+..  |...|.+++|+| +.++++++.|+.|++||+++         ++.+..+.  +...+..+.++|++
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc
Confidence             87764 66777  999999999999 99999999999999999886         55444443  45668888899887


Q ss_pred             CEEEEEecCCeEEEEEcCC-CcE--EEEEEccCCceeEEEEEEEcc-CCcEEEEeecCCeEEEEECCch------heeec
Q 021459          205 KFILVGTLDSTLKLWNYSA-GKF--LKIYTGHTNKKYCITSTFSVT-NGKYIVSGSEDNCVYVWDLQQK------TMIQK  274 (312)
Q Consensus       205 ~~l~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~  274 (312)
                        +++++.|+.|++||+++ +..  ......+....   ......+ +++++++++.||.|++|++...      +....
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI---RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE---EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCce---eEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence              89999999999999987 543  22333344433   3333446 7899999999999999999876      66677


Q ss_pred             ccCCcc---------ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          275 LDGHTD---------SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       275 ~~~h~~---------~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +.+|..         .|.+++|+|++++|++++.|  ++|++|++.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~  281 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD--GIISCWNLQ  281 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT--SCEEEEETT
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCC--ceEEEEcCc
Confidence            777755         99999999999999999955  589999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=237.18  Aligned_cols=256  Identities=17%  Similarity=0.277  Sum_probs=202.5

Q ss_pred             EeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCCC-CceeeeeeecccccEEEEEEecCCCEEEE
Q 021459           49 WSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDART-PFDCLKTLRGHSDFVFCVNFNPQSNLIVS  124 (312)
Q Consensus        49 w~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  124 (312)
                      ++....+.+..+.+|...|++++|+|+   |++|++|+.||.|++||+.+ .......+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            345566677788899999999999999   59999999999999999987 43444678889999999999999999999


Q ss_pred             eecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE--ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC
Q 021459          125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP  202 (312)
Q Consensus       125 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
                      ++.||.|++||+++++... +..|..+|.+++|  +|+++++++++.|+.|++||+++++.+..+....  .+....+  
T Consensus       104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~--  178 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADV--  178 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEE--
T ss_pred             EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEe--
Confidence            9999999999999988665 5678999999999  8999999999999999999999988776664332  3333333  


Q ss_pred             CCCEEEEEecCCeEEEEEcCCCcEEEEEE-c-cCCceeEEEEEEEcc-CCcEEEEeecCCeEEEEECCch---heeeccc
Q 021459          203 NGKFILVGTLDSTLKLWNYSAGKFLKIYT-G-HTNKKYCITSTFSVT-NGKYIVSGSEDNCVYVWDLQQK---TMIQKLD  276 (312)
Q Consensus       203 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~  276 (312)
                      ....+++++.++.+++||++......... . ......++....... ....+++++.||.|++||+...   .....+.
T Consensus       179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence            34588889999999999998765433222 1 112222332222111 1234999999999999999876   5566777


Q ss_pred             CCcc------------ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          277 GHTD------------SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       277 ~h~~------------~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|..            .|.+++|+|++++|++++.|  ++|++|++.
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~i~iwd~~  303 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD--GRFSFWDKD  303 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEEEEETT--SCEEEEETT
T ss_pred             eeecccccccccccccceEEEEEecCCCEEEEEccC--CeEEEEECC
Confidence            7766            79999999999999999955  589999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2e-33  Score=227.67  Aligned_cols=289  Identities=15%  Similarity=0.163  Sum_probs=204.5

Q ss_pred             eeceeeeccccc----ceEEEEECCCCC---EEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEccCCC-eEE
Q 021459           12 YRHFKTLTAHSR----AVSCVKFSNDGT---LLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSSDSH-YIC   80 (312)
Q Consensus        12 ~~~~~~~~~h~~----~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~   80 (312)
                      ++.+.+|....+    .+.++.|-..+-   .++++++ ..|++|+..+.   ++++.+..|..+|..+.+.||.. ++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC  103 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence            455555555444    345666644332   5777776 58999999988   78899999999999999999754 444


Q ss_pred             EEcCCCeE-EEEeCCC-Cc----eeeeeeecccccEEEEEEecCCCEEEEee--cCCcEEEEEc-CCCeEEEEeeecCcC
Q 021459           81 SASDDRTL-RIWDART-PF----DCLKTLRGHSDFVFCVNFNPQSNLIVSGS--FDESIRIWEV-KTGKCTRVIRAHSMP  151 (312)
Q Consensus        81 ~~~~d~~v-~~wd~~~-~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~~wd~-~~~~~~~~~~~~~~~  151 (312)
                      .+-..-.+ .++-+.- +.    .......+|...+..+   ++++.+.+++  .|+.|++|++ ..++.+..+..|...
T Consensus       104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~  180 (356)
T 2w18_A          104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE  180 (356)
T ss_dssp             EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred             eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence            33222111 1221111 11    1111223455555554   5666666643  5999999999 458888888899999


Q ss_pred             eEEEEEcc---CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC--CcEEEEEECCCCCEE------------EEEecCC
Q 021459          152 VTSVHFNR---DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD--PAVSFAKFSPNGKFI------------LVGTLDS  214 (312)
Q Consensus       152 v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l------------~~~~~d~  214 (312)
                      ++.++|+|   ++++|++++.|++|++||+.+++.++++..++.  ..+..++|+|+|.++            ++|+.|+
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            99999999   779999999999999999999999888864332  245566799999876            5577899


Q ss_pred             eEEEEEcCCCcEEEEEE-----ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceE-EEEEc
Q 021459          215 TLKLWNYSAGKFLKIYT-----GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVI-SVTCH  288 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~  288 (312)
                      +|++||..+++.+..+.     +|...  .+...+   ++.++++|+.||+|+|||+.+++.+.++.+|...+. .++|+
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence            99999999998876653     33332  222111   267899999999999999999999999999987665 58999


Q ss_pred             CCCceEEEeeecCCeeEEEEeec
Q 021459          289 PTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       289 p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |++++|++|+.|  ++||||++.
T Consensus       336 PDG~~LaSGS~D--~TIklWd~~  356 (356)
T 2w18_A          336 GTDSHLLAGQKD--GNIFVYHYS  356 (356)
T ss_dssp             SSSSEEEEECTT--SCEEEEEEC
T ss_pred             CCCCEEEEEECC--CcEEEecCC
Confidence            999999999955  699999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.4e-32  Score=229.52  Aligned_cols=265  Identities=12%  Similarity=0.106  Sum_probs=211.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      .++++++.|+.|++||..+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++ +.+..+..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC-eEEEEEECCC-Cccce
Confidence            467889999999999999999888887664 58999999999976 67778999999999875 4455555444 89999


Q ss_pred             EEecCCCEEEE-eecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEeCCCCceeeEcccCC
Q 021459          114 NFNPQSNLIVS-GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWDAGEGACLKTLIDDK  191 (312)
Q Consensus       114 ~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~  191 (312)
                      +|+|+++.++. ++.++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++....+... 
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-  157 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-  157 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence            99999998754 456799999999999887777654 468999999999977 68888999999999998877665432 


Q ss_pred             CCcEEEEEECCCCCEE-EEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee---cCCeEEEEECC
Q 021459          192 DPAVSFAKFSPNGKFI-LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS---EDNCVYVWDLQ  267 (312)
Q Consensus       192 ~~~~~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~  267 (312)
                       .....+.|+|+++.+ ++++.++.|++||+++++.+..+..+. .   +......+++++|++++   .++.|++||+.
T Consensus       158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~---~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A---PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E---EEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C---ccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence             345778899999987 566788999999999988777665432 2   22233457788888877   68999999999


Q ss_pred             chheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          268 QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       268 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +++.+..+..|. .+.+++|+|++++++.++. .+++|++|+..
T Consensus       233 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~-~d~~v~v~d~~  274 (391)
T 1l0q_A          233 TNKITARIPVGP-DPAGIAVTPDGKKVYVALS-FXNTVSVIDTA  274 (391)
T ss_dssp             TTEEEEEEECCS-SEEEEEECTTSSEEEEEET-TTTEEEEEETT
T ss_pred             CCeEEEEEecCC-CccEEEEccCCCEEEEEcC-CCCEEEEEECC
Confidence            888887777665 4789999999988854432 45799999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.5e-31  Score=223.31  Aligned_cols=256  Identities=16%  Similarity=0.166  Sum_probs=204.4

Q ss_pred             ceeeecccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEE
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIW   91 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~w   91 (312)
                      ....+..|. .+.+++|+|++++| ++++.|+.|++||..+++.+..+..+. .+.+++|+|++++|+ +++.++.|++|
T Consensus        24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~  101 (391)
T 1l0q_A           24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (391)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence            344555554 58999999999976 677789999999999998887777554 899999999999775 55567999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEE-EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLI-VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSH  169 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~  169 (312)
                      |+.+. +.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++....+..+. .+..++|+|+++.+ ++++.
T Consensus       102 d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          102 DTTSN-TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             ETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT
T ss_pred             ECCCC-eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCC
Confidence            99875 445555544 467899999999977 688889999999999998887776654 56899999999877 57788


Q ss_pred             CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe---cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT---LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ++.|++||+++++....+..  ...+..++++|++++|++++   .++.|++||+.+++.+..+..+.. .  .. ....
T Consensus       179 ~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~--~~-~~~s  252 (391)
T 1l0q_A          179 SMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-P--AG-IAVT  252 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-E--EE-EEEC
T ss_pred             CCEEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-c--cE-EEEc
Confidence            89999999999877665532  34567788999999999887   689999999999988887776543 2  22 2334


Q ss_pred             cCCcEE-EEeecCCeEEEEECCchheeecccCCcc
Q 021459          247 TNGKYI-VSGSEDNCVYVWDLQQKTMIQKLDGHTD  280 (312)
Q Consensus       247 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~  280 (312)
                      +++++| ++++.|+.|++||+.+++....+..|..
T Consensus       253 ~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          253 PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            677766 7778999999999999888777766544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=232.52  Aligned_cols=244  Identities=16%  Similarity=0.141  Sum_probs=196.9

Q ss_pred             cccccceEEEEECCCCCEE-EEEeCCCeEEEEeCC--CcceEEEee--eccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           19 TAHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSAS--SLALVHRFV--GHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      .+|.+.|++++|+|++++| ++++.||.|++|++.  +++.+..+.  .|...|.+++|+|++++|++++.++.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4678899999999999996 899999999999998  787777776  56789999999999999999999999999998


Q ss_pred             CCCce---eeeeeecccccEEEEEEecC---CCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEE
Q 021459           94 RTPFD---CLKTLRGHSDFVFCVNFNPQ---SNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        94 ~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      .+...   ....+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +..|...|.+++|+ ++++|++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            76432   22366789999999999999   89999999999999999999887776 55899999999999 9999999


Q ss_pred             eeCCCeEEEEeCCCCceeeEccc------------------------CCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLID------------------------DKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNY  221 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~  221 (312)
                      ++.|+.|++||+++++.+..+..                        .....+..+.++|++++|++++ .++.|++||+
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999887665531                        1234577889999999999998 8999999999


Q ss_pred             --CCC---cEEEEEEccCCceeEEEEEEEccCCcEEEEeec------CCeEEEEECC
Q 021459          222 --SAG---KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE------DNCVYVWDLQ  267 (312)
Q Consensus       222 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~  267 (312)
                        ..+   +.+..+..+ ...  ..+.+. +++.++++++.      +..|.+|.+.
T Consensus       338 ~~~~~~~l~~~~~~~~~-~~v--~~~~~~-~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          338 SEKQKGDLALKQIITFP-YNV--ISLSAH-NDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSSTTCEEEEEEEECS-SCE--EEEEEE-TTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ccCCCCceeeccEeccC-Cce--EEEEec-CCcEEEEEecccCCCCCCcceEEEEEE
Confidence              555   455566665 333  233344 44433343332      5557888764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.6e-32  Score=227.04  Aligned_cols=245  Identities=13%  Similarity=0.173  Sum_probs=179.9

Q ss_pred             EEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEE-EEee
Q 021459           48 IWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI-VSGS  126 (312)
Q Consensus        48 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~  126 (312)
                      +|+..+.+.+.....|...|.+++|+|++++|++|+.++ +++||..+.. .....  +...+..+++.++++.+ ++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-HIMSQ--EMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-EEEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-eeeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence            455556666666788999999999999999999998765 7899987642 22222  22246778888888876 5678


Q ss_pred             cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCC
Q 021459          127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGK  205 (312)
Q Consensus       127 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  205 (312)
                      .|++|++||+.+++.+..+. +..+|.++.++++.  ++++ .++.|++||+.++ +.+..+..    ....+++++  .
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~  148 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--G  148 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--T
T ss_pred             CccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--c
Confidence            88999999999999888776 56689999998764  3333 4789999999887 55544432    344556777  5


Q ss_pred             EEEE--EecCCeEEEEEcCCCc----------------EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe-EEEEEC
Q 021459          206 FILV--GTLDSTLKLWNYSAGK----------------FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC-VYVWDL  266 (312)
Q Consensus       206 ~l~~--~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~  266 (312)
                      ++++  |+.+|.|++||+.++.                .+..+.+|.....++   ...+++++|++|+.||+ |++||+
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~---~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV---RLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE---EECTTSSEEEEEETTCSEEEEEET
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE---EECCCCCEEEEEeCCCCEEEEEEC
Confidence            6666  5889999999998765                156677787765444   34578999999999998 999999


Q ss_pred             Cchheeeccc-C-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          267 QQKTMIQKLD-G-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       267 ~~~~~~~~~~-~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+++.+..+. + |...|.+++|+|++++|++++.|  ++|++|++.
T Consensus       226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d--~~v~iw~~~  270 (355)
T 3vu4_A          226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK--WTLHVFEIF  270 (355)
T ss_dssp             TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT--CEEEEEESS
T ss_pred             CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC--CEEEEEEcc
Confidence            9999988887 5 99999999999999999999955  699999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=229.08  Aligned_cols=229  Identities=12%  Similarity=0.087  Sum_probs=178.1

Q ss_pred             EccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC---------CCeEE
Q 021459           72 WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK---------TGKCT  142 (312)
Q Consensus        72 ~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~---------~~~~~  142 (312)
                      +.+++.+|++|+.||.|++||+.++. .+..+.  ...+.++.++|+   +++++.|++|++|+..         +++.+
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~-~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSK-TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSS-CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCc-EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            44678899999999999999998753 343443  356777788887   9999999999999765         44444


Q ss_pred             EEee-ecCcCeEEEEEcc--CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459          143 RVIR-AHSMPVTSVHFNR--DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW  219 (312)
Q Consensus       143 ~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~  219 (312)
                      ..+. .|..+|.+++|+|  +++++++++.|+.|++||+++++............+..++|+|++.+|++|+.||.|++|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            4443 5667899999999  999999999999999999999887655544455567888999999999999999999999


Q ss_pred             EcCCCcEE-EEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC---CccceE--EEEEcCCCc
Q 021459          220 NYSAGKFL-KIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG---HTDSVI--SVTCHPTEN  292 (312)
Q Consensus       220 d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~~p~~~  292 (312)
                      |+++++.+ ..+.. |.....++   .+.+++.+|++++ ++.|++||+++.+.+..+..   |...+.  +++|+|+++
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l---~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEV---KFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK  273 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEE---EECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred             ECCCCCCCccEEeccCCCCEEEE---EEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence            99998876 66666 66654443   4457899999999 45999999998876655543   434444  699999999


Q ss_pred             eEEEeeecCCeeEEEEeec
Q 021459          293 KIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|++++. +++.|++|+++
T Consensus       274 ~l~~~s~-~d~~i~v~~~~  291 (343)
T 3lrv_A          274 NMIAYSN-ESNSLTIYKFD  291 (343)
T ss_dssp             EEEEEET-TTTEEEEEEEC
T ss_pred             EEEEecC-CCCcEEEEEEc
Confidence            9999884 15689999874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.8e-31  Score=219.30  Aligned_cols=216  Identities=21%  Similarity=0.377  Sum_probs=181.8

Q ss_pred             eceeeecccccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCc---------ceEEEeeeccCCEEEEEEccC--CCeE
Q 021459           13 RHFKTLTAHSRAVSCVKFSN--DGTLLASASLDKTVIIWSASSL---------ALVHRFVGHSEGISDLAWSSD--SHYI   79 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l   79 (312)
                      +....+.+|...|++++|+|  ++++|++++.||.|++|++..+         +.+..+..|...|.+++|+|+  +++|
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            45667789999999999999  6999999999999999999876         557778889999999999999  9999


Q ss_pred             EEEcCCCeEEEEeCCCCceeeee-------------eecccccEEEEEEecC---CCEEEEeecCCcEEEEEcCCCeE--
Q 021459           80 CSASDDRTLRIWDARTPFDCLKT-------------LRGHSDFVFCVNFNPQ---SNLIVSGSFDESIRIWEVKTGKC--  141 (312)
Q Consensus        80 ~~~~~d~~v~~wd~~~~~~~~~~-------------~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~--  141 (312)
                      ++++.|+.|++||+++... +..             ..+|...+.+++|+|+   ++.+++++.++.+.+|+...++.  
T Consensus       128 ~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EEecCCCcEEEecCCChHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence            9999999999999876432 111             1257788999999997   89999999999998888877764  


Q ss_pred             EEEeeecCcCeEEEEEccCC----CEEEEeeCCCeEEEEeCCCC------------------------------------
Q 021459          142 TRVIRAHSMPVTSVHFNRDG----SLIVSGSHDGTCKIWDAGEG------------------------------------  181 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~------------------------------------  181 (312)
                      ...+..|..+|.+++|+|++    ++|++++.||.|++||++++                                    
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            55677899999999999998    89999999999999998764                                    


Q ss_pred             ----------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          182 ----------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       182 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                                +.+..+ ..+...+..++|+|++++|++++.||.|++||+..++....+
T Consensus       287 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          287 KAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ----CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                      222222 234567888999999999999999999999999887655443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.4e-32  Score=229.78  Aligned_cols=240  Identities=17%  Similarity=0.157  Sum_probs=169.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-----EEeeeccCCEEEEEEcc--------CCCeEEEEcCCCeEE
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV-----HRFVGHSEGISDLAWSS--------DSHYICSASDDRTLR   89 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~   89 (312)
                      ..+....+++++.+|++++.|++|++|+..+++..     ..+.+|.+.|++++|+|        ++++|++|+.|++|+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence            33333444556778999999999999998877543     23568999999999998        789999999999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEE------------------------
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRV------------------------  144 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~------------------------  144 (312)
                      +||+.+.. .+....+|...+.+++|+|++ ++|++++.|++|++||+++++....                        
T Consensus       170 ~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          170 IWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             EEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             EEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            99997753 455566788899999999987 4799999999999999987754322                        


Q ss_pred             -eeecCcCeEEEEEc-cCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC------------------CCcEEEEEECC-C
Q 021459          145 -IRAHSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK------------------DPAVSFAKFSP-N  203 (312)
Q Consensus       145 -~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~  203 (312)
                       ...|...+.++.|+ |+++.+++++.|+.+++||+..++....+....                  ...+....+.+ +
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence             13455678888886 799999999999999999998765443332110                  11111222222 3


Q ss_pred             CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       204 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +.++++|+.||.|++||..+++.......+....   ....+.++|++||+++++| +.+|.+.
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V---~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPI---VDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCE---EEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcE---EEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            4466778889999999999988877777676653   3344568999999998877 6666553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.1e-29  Score=216.91  Aligned_cols=282  Identities=12%  Similarity=0.111  Sum_probs=216.1

Q ss_pred             cccceEEEE---ECCCCCEEEEEe--------------CCC--eEEEEeCCCc--ceEEEeeeccCCEEEEEEccCCCeE
Q 021459           21 HSRAVSCVK---FSNDGTLLASAS--------------LDK--TVIIWSASSL--ALVHRFVGHSEGISDLAWSSDSHYI   79 (312)
Q Consensus        21 h~~~v~~~~---~s~~~~~l~t~~--------------~d~--~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l   79 (312)
                      ....+..++   |+|+++.++..+              .++  .|..++..++  +.+..+..+ ..+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence            456677888   899887665432              223  3334444333  444455444 456689999977888


Q ss_pred             EEEcCCCeEEEEeCCCCceeee-----eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           80 CSASDDRTLRIWDARTPFDCLK-----TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        80 ~~~~~d~~v~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      ++++.++.|++||+.++. ...     .+.+|.+.+.+++|+|+++.+++++.|+.|++||+++++....+..|...+.+
T Consensus       138 ~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  216 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQ-TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI  216 (433)
T ss_dssp             EEBTTSSSEEEEETTTCC-EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred             EEeCCCCeEEEEECCCCe-EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence            888889999999998753 333     34578889999999999999999999999999999999988888888889999


Q ss_pred             EEEccCCCEEE-EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe--------cCCeEEEEEcCCCc
Q 021459          155 VHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT--------LDSTLKLWNYSAGK  225 (312)
Q Consensus       155 ~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~v~d~~~~~  225 (312)
                      ++|+|+++.++ +++.++.|++||+++++....+..  ...+..++++|+++++++++        .|+.|++||+.+++
T Consensus       217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~  294 (433)
T 3bws_A          217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK  294 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence            99999999885 555799999999998887766543  34477889999999999887        48899999999887


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCc-EEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC---
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGK-YIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG---  301 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg---  301 (312)
                      .+..+.. .....  ...+ .++++ ++++++.++.|++||+.+++....+. +...+.+++|+|+++.+++++.+.   
T Consensus       295 ~~~~~~~-~~~~~--~~~~-~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~  369 (433)
T 3bws_A          295 LIDTIGP-PGNKR--HIVS-GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHP  369 (433)
T ss_dssp             EEEEEEE-EECEE--EEEE-CSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCT
T ss_pred             EEeeccC-CCCcc--eEEE-CCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcc
Confidence            7665532 22222  2233 45665 56778999999999999887777665 667899999999999888887543   


Q ss_pred             ----------CeeEEEEeec
Q 021459          302 ----------DRTVRVWVQD  311 (312)
Q Consensus       302 ----------d~~v~iw~~~  311 (312)
                                |+.|++|+..
T Consensus       370 ~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          370 TEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             TTCTTSCCSSCCEEEEEETT
T ss_pred             ccccccccccceEEEEEECC
Confidence                      4589999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.1e-30  Score=211.76  Aligned_cols=198  Identities=18%  Similarity=0.175  Sum_probs=154.3

Q ss_pred             cccceEEEEECCC----CCEEEEEeC--------------------CCeEEEEeCC-CcceEEEeeeccCCEEEEEEcc-
Q 021459           21 HSRAVSCVKFSND----GTLLASASL--------------------DKTVIIWSAS-SLALVHRFVGHSEGISDLAWSS-   74 (312)
Q Consensus        21 h~~~v~~~~~s~~----~~~l~t~~~--------------------d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~-   74 (312)
                      +...|..++|+|+    ++.+++++.                    |+.|++|++. +++.+..+.+|...+..++|++ 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            4456777778888    667766553                    8899999984 4777788889999999999998 


Q ss_pred             --CCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEE------------EEeecCCcEEEEEcC
Q 021459           75 --DSHYICSASDDRTLRIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLI------------VSGSFDESIRIWEVK  137 (312)
Q Consensus        75 --~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~s~~~dg~i~~wd~~  137 (312)
                        ++.+|++++.|++|++||+.++ ++++++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             CCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence              6789999999999999999986 5677777643   357778999999876            567889999999999


Q ss_pred             CCeEEEEee-----ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          138 TGKCTRVIR-----AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       138 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      +++.+..+.     +|...+.+..+  ++.++++++.|++|++||+.+++.+.++.++....+..++|+|+|++|++|+.
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            998876552     44444443333  47789999999999999999999998886665556666789999999999999


Q ss_pred             CCeEEEEEc
Q 021459          213 DSTLKLWNY  221 (312)
Q Consensus       213 d~~i~v~d~  221 (312)
                      |++|++||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.1e-31  Score=242.25  Aligned_cols=213  Identities=24%  Similarity=0.374  Sum_probs=182.4

Q ss_pred             eceeeecccccceEEEEECCC--CCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccC--CCeEEEEcCCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSD--SHYICSASDDR   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   86 (312)
                      ....++.+|.++|++++|+|+  +++|++|+.||.|++|++.+++  .+..+.+|...|.+++|+|+  ++++++|+.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            455678899999999999988  9999999999999999998876  66777889999999999999  99999999999


Q ss_pred             eEEEEeCCCCc-eeeeeeecccccEEEEEEec-------------CCCEEEEeecCCcEEEEEcCCC----eEEEEeeec
Q 021459           87 TLRIWDARTPF-DCLKTLRGHSDFVFCVNFNP-------------QSNLIVSGSFDESIRIWEVKTG----KCTRVIRAH  148 (312)
Q Consensus        87 ~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~dg~i~~wd~~~~----~~~~~~~~~  148 (312)
                      .|++||+.+.. .....+.+|...|.+++|+|             +++.+++++.||.|++||++++    .....+..|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            99999997652 23445678999999999999             5899999999999999999876    455677789


Q ss_pred             CcCeEEEEEccC---CCEEEEeeCCCeEEEEeCCCCcee--eEc--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          149 SMPVTSVHFNRD---GSLIVSGSHDGTCKIWDAGEGACL--KTL--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       149 ~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      ..+|.+++|+|+   ++++++++.||.|++||++++...  ...  ...+...+..++|+|+++++++++.||.|++||+
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            999999999999   899999999999999999876321  111  1224456777889999999999999999999998


Q ss_pred             CCCc
Q 021459          222 SAGK  225 (312)
Q Consensus       222 ~~~~  225 (312)
                      ..+.
T Consensus       284 ~~~~  287 (753)
T 3jro_A          284 NLEG  287 (753)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            7543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.1e-29  Score=218.67  Aligned_cols=275  Identities=10%  Similarity=0.148  Sum_probs=216.2

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC--CCCceeeeeeecc
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA--RTPFDCLKTLRGH  106 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~--~~~~~~~~~~~~~  106 (312)
                      .++|++.++++++.|+.|.+||..+++.+..+..+.. +..++|+|+|++|++++.|+.|.+||+  .+. +.+..+.. 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~-  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKI-  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEEC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEec-
Confidence            4889999999999999999999999999888874333 889999999999999999999999999  553 55666653 


Q ss_pred             cccEEEEEEec----CCCEEEEeec-CCcEEEEEcCCCeEEEEeeec----------Cc-CeEEEEEccCCC-EEEEeeC
Q 021459          107 SDFVFCVNFNP----QSNLIVSGSF-DESIRIWEVKTGKCTRVIRAH----------SM-PVTSVHFNRDGS-LIVSGSH  169 (312)
Q Consensus       107 ~~~v~~~~~~~----~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~-~l~~~~~  169 (312)
                      ......++|+|    +++++++++. +++|.+||..+++++..+..+          .. .+..+.++|++. ++++...
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            45678999999    9999998885 899999999999888777542          22 678999999765 4566778


Q ss_pred             CCeEEEEeCCCCceee--EcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEEc----cCCceeEEEE
Q 021459          170 DGTCKIWDAGEGACLK--TLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYTG----HTNKKYCITS  242 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~----~~~~~~~~~~  242 (312)
                      ++.|.+||..+.+.+.  .+.  .......+.|+|+|+++++++ .+++|.+||..+++.+..+..    |....  .. 
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g--~~-  375 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG--AN-  375 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC--EE-
T ss_pred             CCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC--cc-
Confidence            8999999998765433  221  233345577999999877654 588999999999998887764    32221  11 


Q ss_pred             EEEccCCcEEEEee-cCCeEEEEECCc-------hheeecccCCccceEEEEEcCCCceEEEeee---c--CCeeEEEEe
Q 021459          243 TFSVTNGKYIVSGS-EDNCVYVWDLQQ-------KTMIQKLDGHTDSVISVTCHPTENKIASAGL---D--GDRTVRVWV  309 (312)
Q Consensus       243 ~~~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~---d--gd~~v~iw~  309 (312)
                      ...+..+.+++++. .|++|.+||+.+       .+.++++.+|...+..+++||++++|.+++.   |  .+.+|.+|+
T Consensus       376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            12333367778775 689999999987       7888999999888999999999999998762   1  145999999


Q ss_pred             ec
Q 021459          310 QD  311 (312)
Q Consensus       310 ~~  311 (312)
                      .+
T Consensus       456 ~~  457 (543)
T 1nir_A          456 LK  457 (543)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=5.9e-29  Score=228.08  Aligned_cols=286  Identities=12%  Similarity=0.106  Sum_probs=214.5

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CC-----eEEEEeCCCcceEEEeeeccC------------------------CEEEEE
Q 021459           22 SRAVSCVKFSNDGTLLASASL-DK-----TVIIWSASSLALVHRFVGHSE------------------------GISDLA   71 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~-d~-----~i~vw~~~~~~~~~~~~~~~~------------------------~v~~~~   71 (312)
                      ...+.+++|||||++|++++. |+     .|++|+..+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     899999999887665554433                        278999


Q ss_pred             EccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc
Q 021459           72 WSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM  150 (312)
Q Consensus        72 ~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  150 (312)
                      |+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.|++++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999876 999999997641 02445566778899999999999999887 46899999998876655443332


Q ss_pred             C----------------eEEEEEccCCCEEEEeeCCC---------------------------------eEEEEeCCC-
Q 021459          151 P----------------VTSVHFNRDGSLIVSGSHDG---------------------------------TCKIWDAGE-  180 (312)
Q Consensus       151 ~----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~iwd~~~-  180 (312)
                      .                +..++|+|||++|+.++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47799999999999887765                                 788999987 


Q ss_pred             CceeeEccc-CCCCcEEEEEECCCCCEEEEEec-----CCeEEEEEcCCCcEEEEEEccCCcee-EEEEEEEccCCcEEE
Q 021459          181 GACLKTLID-DKDPAVSFAKFSPNGKFILVGTL-----DSTLKLWNYSAGKFLKIYTGHTNKKY-CITSTFSVTNGKYIV  253 (312)
Q Consensus       181 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  253 (312)
                      ++....... .+...+..+.| |||++|+++..     +..|++||..+++....+..+..... .+....+.+++++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            765433222 23455777889 99999997754     56899999999887766654432100 011122347788999


Q ss_pred             EeecCCeEEEEECC-chheeecccCCccceEEE-EEcCCCceEEEeee-cCCeeEEEEeec
Q 021459          254 SGSEDNCVYVWDLQ-QKTMIQKLDGHTDSVISV-TCHPTENKIASAGL-DGDRTVRVWVQD  311 (312)
Q Consensus       254 ~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l-~~~p~~~~l~~~~~-dgd~~v~iw~~~  311 (312)
                      +++.||.++||.+. ++. ...+..|...|..+ +|+|+++.++..+. |+..+++||.++
T Consensus       353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            99999988888765 333 66777788888887 59999988765543 333488999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.5e-28  Score=210.32  Aligned_cols=265  Identities=12%  Similarity=0.099  Sum_probs=201.8

Q ss_pred             eeecccccceEEEEECC--------------CCCEEEEEeCC------CeEEEEeCCCcceEEEeeeccCCEEEEEEccC
Q 021459           16 KTLTAHSRAVSCVKFSN--------------DGTLLASASLD------KTVIIWSASSLALVHRFVGHSEGISDLAWSSD   75 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~--------------~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~   75 (312)
                      .++.+|...+..+++++              .+..++.++.+      +.|++||.... ....+.+|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC
Confidence            34666777676666654              15566665554      79999999754 45677889999999999999


Q ss_pred             CCeEEEEcCCC---eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCc--EEEEEcCCCeEEEEeeecC
Q 021459           76 SHYICSASDDR---TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDES--IRIWEVKTGKCTRVIRAHS  149 (312)
Q Consensus        76 ~~~l~~~~~d~---~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~  149 (312)
                      |++|++++.++   .|++||+.++..  ..+..|...+.+++|+||++.|+ +++.++.  |++||+.+++. ..+..|.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  266 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR  266 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence            99999998875   999999987532  34666788899999999999877 6666654  99999998875 4566677


Q ss_pred             cCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCC
Q 021459          150 MPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSA  223 (312)
Q Consensus       150 ~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~  223 (312)
                      ..+.+++|+|+|++|+.++. ++  .|.+||+.+++.. .+. .....+..+.|+|+|++|++++.+   ..|++||+.+
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            88999999999999888776 44  6778898877643 222 233456678899999999988764   5899999988


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC---eEEEEECCchheeecccCCccceEEEEEcCCCc
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN---CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN  292 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~  292 (312)
                      ++... +..+. .   +....+.+++++|++++.++   .|.+||+. +.....+.+|.+.|.+++|+|...
T Consensus       345 ~~~~~-l~~~~-~---~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          345 GGVQV-LSSTF-L---DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCEEE-CCCSS-S---CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCEEE-ecCCC-C---cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            87643 33332 2   22234457899998888777   89999987 445678888999999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.2e-28  Score=210.95  Aligned_cols=278  Identities=13%  Similarity=0.138  Sum_probs=208.2

Q ss_pred             cceEEEEECCCCC-EEEEEe----CCC----eEEEEeC--CCcceE--EEeeeccCCEEEEEEcc--------------C
Q 021459           23 RAVSCVKFSNDGT-LLASAS----LDK----TVIIWSA--SSLALV--HRFVGHSEGISDLAWSS--------------D   75 (312)
Q Consensus        23 ~~v~~~~~s~~~~-~l~t~~----~d~----~i~vw~~--~~~~~~--~~~~~~~~~v~~~~~~~--------------~   75 (312)
                      ..+....|.+.+. ++++|+    .+|    .+++||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4667778888775 566776    467    8999999  888876  45788888887777764              1


Q ss_pred             CCeEEEEcCC------CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC---cEEEEEcCCCeEEEEee
Q 021459           76 SHYICSASDD------RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE---SIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        76 ~~~l~~~~~d------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~  146 (312)
                      +..++.++.+      +.|++||+...  ....+.+|...+.+++|+|+++.+++++.++   .|++||+.+++.. .+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            5566655544      79999998753  3566777889999999999999999999875   8999999998765 455


Q ss_pred             ecCcCeEEEEEccCCCEEE-EeeCCCe--EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec-CC--eEEEEE
Q 021459          147 AHSMPVTSVHFNRDGSLIV-SGSHDGT--CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL-DS--TLKLWN  220 (312)
Q Consensus       147 ~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~v~d  220 (312)
                      .|...+.+++|+|||+.|+ +++.++.  |.+||+.+++. ..+. .+...+..+.|+|+|++|++++. ++  .|++||
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            6777899999999999887 6666554  99999988765 3333 34456778899999999998876 44  688889


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      +.+++... +..+...   +....+.+++++|++++.+   +.|.+||+.+++. ..+..+. .+.+++|+|+++.|+++
T Consensus       298 ~~~~~~~~-l~~~~~~---~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          298 INGGAPQR-ITWEGSQ---NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             TTSSCCEE-CCCSSSE---EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEE
T ss_pred             CCCCCEEE-EecCCCc---ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEE
Confidence            88776432 2223222   2233445789998887764   6899999987765 3455554 89999999999999998


Q ss_pred             eecCC-eeEEEEeec
Q 021459          298 GLDGD-RTVRVWVQD  311 (312)
Q Consensus       298 ~~dgd-~~v~iw~~~  311 (312)
                      +.|+. ..|++|+.+
T Consensus       372 s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEETTEEEEEEEETT
T ss_pred             EcCCCccEEEEEECC
Confidence            87653 367777653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2.9e-27  Score=208.42  Aligned_cols=278  Identities=12%  Similarity=0.088  Sum_probs=214.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeC--CCcceEEEeeeccCCEEEEEEcc----CCCeEEEEcC-CCeEEEEeCCCCc
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSA--SSLALVHRFVGHSEGISDLAWSS----DSHYICSASD-DRTLRIWDARTPF   97 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~v~~wd~~~~~   97 (312)
                      +..++|+|+|++|++++.|+.|++||+  .+++.+..+. +...+..++|+|    +|++|++++. +++|.+||..+. 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-  258 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-  258 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-
Confidence            889999999999999999999999999  7888877776 455689999999    9999998874 899999998874 


Q ss_pred             eeeeeeec----------ccc-cEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEE--EeeecCcCeEEEEEccCCCE
Q 021459           98 DCLKTLRG----------HSD-FVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTR--VIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus        98 ~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  163 (312)
                      +.++.+..          |.+ .+..+.++|++.. +++...++.|.+||+.+.+.+.  .+ .+...+..+.|+|+|++
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCE
Confidence            44555443          222 6888999997765 5666778999999998765443  33 34556788999999998


Q ss_pred             EEEe-eCCCeEEEEeCCCCceeeEcccC---CC-CcEEEEEECCC-CCEEEEEe-cCCeEEEEEcCC-------CcEEEE
Q 021459          164 IVSG-SHDGTCKIWDAGEGACLKTLIDD---KD-PAVSFAKFSPN-GKFILVGT-LDSTLKLWNYSA-------GKFLKI  229 (312)
Q Consensus       164 l~~~-~~d~~i~iwd~~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~~l~~~~-~d~~i~v~d~~~-------~~~~~~  229 (312)
                      ++++ ..+++|.+||..++++...+...   +. .... . ++|+ +..++++. .|++|.+||..+       .+.++.
T Consensus       338 l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc-c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            7655 45889999999999887766432   11 1222 2 4676 55566654 579999999988       788888


Q ss_pred             EEccCCceeEEEEEEEccCCcEEEEee-------cCCeEEEEECCchhee-ecc--------cCCccceEEEEEcCCCce
Q 021459          230 YTGHTNKKYCITSTFSVTNGKYIVSGS-------EDNCVYVWDLQQKTMI-QKL--------DGHTDSVISVTCHPTENK  293 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~v~~l~~~p~~~~  293 (312)
                      +..+......+.   ..+++++|.+++       .++.|.+||+.+.+.. ..+        ..+...+..++|+|+|+.
T Consensus       416 l~~~g~~~~~v~---~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~  492 (543)
T 1nir_A          416 LQGQGGGSLFIK---THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  492 (543)
T ss_dssp             EECSCSCCCCEE---CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred             EEcCCCCceEEE---cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence            888765543332   358899999987       3789999999987765 332        456788999999999999


Q ss_pred             EEEeee---cCCeeEEEEee
Q 021459          294 IASAGL---DGDRTVRVWVQ  310 (312)
Q Consensus       294 l~~~~~---dgd~~v~iw~~  310 (312)
                      +.++..   +.+.+|.|||.
T Consensus       493 ~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          493 VWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             EEEEEECCTTSCCEEEEEET
T ss_pred             EEEEeecCCCCCCeEEEEEC
Confidence            887754   34689999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=9.3e-26  Score=188.70  Aligned_cols=272  Identities=11%  Similarity=0.054  Sum_probs=208.9

Q ss_pred             cccceEEEEECCCCCEEEEEeC-------CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEe
Q 021459           21 HSRAVSCVKFSNDGTLLASASL-------DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWD   92 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd   92 (312)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4567889999999998888764       56899999999988777764 34577899999998555 455679999999


Q ss_pred             CCCCceeeeeeecccc---------cEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC
Q 021459           93 ARTPFDCLKTLRGHSD---------FVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG  161 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
                      ..+.. .+..+..+..         ...++.|+|+++.+++++  .++.|.+||+.+++....+..+...+..++|+|++
T Consensus       118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGE-VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCCe-eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            98753 3444443321         267899999999877766  47889999999999887776555667889999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCCceeeEcccC---CCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCcEEEEEEccCCce
Q 021459          162 SLIVSGSHDGTCKIWDAGEGACLKTLIDD---KDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGKFLKIYTGHTNKK  237 (312)
Q Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~  237 (312)
                      +.+++++.++.+.+||+.+++....+...   .......+.++|++++++++.. ++.|.+||..+++.+..+.....  
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence            99999999999999999998877655431   2334566789999998777655 48999999999988777765432  


Q ss_pred             eEEEEEEEccCCcE-EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeec
Q 021459          238 YCITSTFSVTNGKY-IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       238 ~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d  300 (312)
                      .  ...+. ++++. +++...++.|.+||+.+++.+..+... ..+.+++|+|++++|+++..+
T Consensus       275 ~--~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          275 L--AVLFN-PARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             C--CEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             c--eEEEC-CCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            1  22333 56764 555557999999999988877776643 467999999999977776654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1.7e-26  Score=192.23  Aligned_cols=271  Identities=10%  Similarity=0.195  Sum_probs=185.3

Q ss_pred             EEEEEeCCCeEEEEeCC-Ccce-EEEeeeccCCEEEEEEccCCCeEEEEcCC-CeEEEEeCC--CCc-eeeeeeeccccc
Q 021459           36 LLASASLDKTVIIWSAS-SLAL-VHRFVGHSEGISDLAWSSDSHYICSASDD-RTLRIWDAR--TPF-DCLKTLRGHSDF  109 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~wd~~--~~~-~~~~~~~~~~~~  109 (312)
                      ++++++.++.|++|++. +++. ......+...+..++|+|++++|++++.+ +.|.+|++.  ++. ..+..+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            34455789999999985 2321 22234577788999999999988888776 899999986  322 2333444333 6


Q ss_pred             EEEEEEecCCCEEEEeec-CCcEEEEEcCCC---eEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCC-Cce
Q 021459          110 VFCVNFNPQSNLIVSGSF-DESIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGE-GAC  183 (312)
Q Consensus       110 v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~  183 (312)
                      +..++|+|+++.+++++. ++.|.+||+..+   +....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            788999999998876665 788999999433   33333333 33578899999999888777 889999999987 543


Q ss_pred             ee----EcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCC--CcE--EEEEEccC----CceeEEEEEEEccCCc
Q 021459          184 LK----TLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSA--GKF--LKIYTGHT----NKKYCITSTFSVTNGK  250 (312)
Q Consensus       184 ~~----~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~--~~~--~~~~~~~~----~~~~~~~~~~~~~~~~  250 (312)
                      ..    ............+.|+|+++++++++ .++.|++||+..  ++.  ........    ......... ..++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~  243 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH-ITPDGR  243 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE-ECTTSS
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE-ECCCCC
Confidence            22    22222334566788999999776654 789999999953  432  22222111    111222233 346777


Q ss_pred             EEE-EeecCCeEEEEECC----chheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          251 YIV-SGSEDNCVYVWDLQ----QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       251 ~l~-~~~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|+ ++..++.|.+||+.    ..+.+..+..+.. +..++|+|++++|++++. +++.|.+|++|
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d  307 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ-KSHHISVYEIV  307 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT-TTCEEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC-CCCeEEEEEEc
Confidence            665 56689999999997    2344444554444 889999999998887764 35799999765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=5.9e-26  Score=188.40  Aligned_cols=276  Identities=12%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             EEECCCCCE-EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCCceeeeeeec
Q 021459           28 VKFSNDGTL-LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        28 ~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      ..|.+++++ +++++.++.|++||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+.......+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            346665554 6778889999999999998887777666667 9999999997666655 889999999875432445555


Q ss_pred             ccccEEEEEEecCCCEEEEeecCC---cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCCCe-EEEEeCCC
Q 021459          106 HSDFVFCVNFNPQSNLIVSGSFDE---SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHDGT-CKIWDAGE  180 (312)
Q Consensus       106 ~~~~v~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~-i~iwd~~~  180 (312)
                      +.....+++|+|++++++++..++   .|.+||+.+++.+..+..+ .....++|+|+|+++++ ...++. +.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            555555599999999998665553   8999999999887776544 34689999999985554 455578 99999875


Q ss_pred             Ccee----eEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcE---EEEEEccCCceeEEEEEEEccCCcEE
Q 021459          181 GACL----KTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKF---LKIYTGHTNKKYCITSTFSVTNGKYI  252 (312)
Q Consensus       181 ~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
                      ...+    .... ........+.|+|+|++++++ ..++.|++||+.+++.   +..+...... ..+   ...++++++
T Consensus       161 ~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-~~~---~~spdg~~l  235 (331)
T 3u4y_A          161 DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-GTI---VVSRDGSTV  235 (331)
T ss_dssp             TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC-CCE---EECTTSSEE
T ss_pred             CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC-ceE---EECCCCCEE
Confidence            4322    1111 223346778899999966555 4689999999998887   6666543222 222   234778865


Q ss_pred             E-EeecCCeEEEEECCchhe--eecccCC----cc---ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          253 V-SGSEDNCVYVWDLQQKTM--IQKLDGH----TD---SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       253 ~-~~~~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      + +...++.|.+||+.+++.  +..+..+    ..   ....++|+|++++|++++.+ +++|++|+++
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~~  303 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTIS  303 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEec
Confidence            4 445688999999987765  3222211    22   23568999999998877654 4689999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1.8e-27  Score=217.62  Aligned_cols=286  Identities=12%  Similarity=0.085  Sum_probs=202.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC---CEEEEEEccCCCeEEEEcCC---------CeEEEE
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSE---GISDLAWSSDSHYICSASDD---------RTLRIW   91 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~v~~w   91 (312)
                      .+.+++|+|||+++++ +.||.|++||..+++....+..|..   .|.+++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4677899999998876 7899999999999887776666654   49999999999999998764         788899


Q ss_pred             eCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe------------------
Q 021459           92 DARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV------------------  152 (312)
Q Consensus        92 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v------------------  152 (312)
                      |+.++.. .+....+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+                  
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9987532 12222344455788999999999998876 789999999887766554433333                  


Q ss_pred             EEEEEccCCCEEEEeeCCC----------------------------------eEEEEeCCCCceeeEcccC-----CCC
Q 021459          153 TSVHFNRDGSLIVSGSHDG----------------------------------TCKIWDAGEGACLKTLIDD-----KDP  193 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~-----~~~  193 (312)
                      ..++|+|||+.|+.++.++                                  .|.+||+.+++....+...     ...
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            7899999999999887543                                  7899999887754444322     134


Q ss_pred             cEEEEEECCCCCEEEEEec----CCeEEEEEcCCCcEEEEEEccCCc-eeEE-EEEEEccCCcEEEE--eecCC------
Q 021459          194 AVSFAKFSPNGKFILVGTL----DSTLKLWNYSAGKFLKIYTGHTNK-KYCI-TSTFSVTNGKYIVS--GSEDN------  259 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~--~~~dg------  259 (312)
                      .+..+.|+|||+++++...    +..|++||+.+++....+..+... .... ....+.++|+.|+.  ...+|      
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  335 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence            5677899999998877643    357999999998876665433211 1100 01223467876654  45677      


Q ss_pred             eEEEEE-CCchh--eeecccCCccceEE-EEEcCCCceEEEeeecC-CeeEEEEeec
Q 021459          260 CVYVWD-LQQKT--MIQKLDGHTDSVIS-VTCHPTENKIASAGLDG-DRTVRVWVQD  311 (312)
Q Consensus       260 ~i~iwd-~~~~~--~~~~~~~h~~~v~~-l~~~p~~~~l~~~~~dg-d~~v~iw~~~  311 (312)
                      .|.+|| ...+.  ....+..+...+.. ++|+|+++.|+..+.++ ..+++||.++
T Consensus       336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            577777 33333  14455543444554 69999999998776542 2678999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=1e-26  Score=189.31  Aligned_cols=253  Identities=17%  Similarity=0.209  Sum_probs=185.1

Q ss_pred             EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-Cceeeeeeecc-cccEEEEEEe
Q 021459           39 SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-PFDCLKTLRGH-SDFVFCVNFN  116 (312)
Q Consensus        39 t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~-~~~~~~~~~~~-~~~v~~~~~~  116 (312)
                      +++.++.|++|+..+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ .. .......+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEEC
Confidence            4567899999999987765 5666889999999999999999886 78999999987 43 33333444 3678889999


Q ss_pred             cCCCEEEEee--cCCcEEEE--EcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCCeEEEEeCC--CCceeeEccc
Q 021459          117 PQSNLIVSGS--FDESIRIW--EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAG--EGACLKTLID  189 (312)
Q Consensus       117 ~~~~~l~s~~--~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~~~  189 (312)
                      |+++.+++++  .++...+|  ++.+++ ...+..+ ..+..++|+|+++.++ ++..++.+++|++.  ++. ...+ .
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~-~  169 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRL-T  169 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEEC-C
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEc-c
Confidence            9999999988  33455555  445444 3333333 3588899999999877 78889999999853  333 2333 2


Q ss_pred             CCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcC-CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---------
Q 021459          190 DKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---------  258 (312)
Q Consensus       190 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------  258 (312)
                      .....+..+.|+|++++|++++ .++.+++|++. .+.....+..+..   .+......+++++|++++.+         
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY---GDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE---EEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc---ccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            3345677889999999888766 58899999886 4444555444432   23333445789988887765         


Q ss_pred             --CeEEEEECCchhe--eecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          259 --NCVYVWDLQQKTM--IQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       259 --g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                        +.|.+||+.+++.  +..+.+|...+.+++|+|+++.|++++.|.
T Consensus       247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence              5799999987654  334447788899999999999999988764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=2.8e-25  Score=202.63  Aligned_cols=280  Identities=14%  Similarity=0.149  Sum_probs=199.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-----Cc
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-----PF   97 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~-----~~   97 (312)
                      ..|.+++|||| +.++.+ .++.+++||..+++.. .+..+...+.+++|+|||++|+++ .++.|++||+.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            57999999999 655555 3599999999887654 445567778899999999999985 689999999976     43


Q ss_pred             eeeeeeeccccc--------------EEEEEEecCCCEEEEee---------------------------------cCCc
Q 021459           98 DCLKTLRGHSDF--------------VFCVNFNPQSNLIVSGS---------------------------------FDES  130 (312)
Q Consensus        98 ~~~~~~~~~~~~--------------v~~~~~~~~~~~l~s~~---------------------------------~dg~  130 (312)
                      . ......+...              +.++.|+||++.|++++                                 .+..
T Consensus       158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            2 2222222222              47899999999999887                                 3467


Q ss_pred             EEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCceeeEccc-CCCC---cEEEEE
Q 021459          131 IRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGACLKTLID-DKDP---AVSFAK  199 (312)
Q Consensus       131 i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~---~~~~~~  199 (312)
                      |++||+.+++......  .|...+..++|+|||+.+++++.++     .|.+||+.+++....+.. ....   .+..+.
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            9999999887655432  3556789999999999999887775     899999998833333321 1111   123457


Q ss_pred             ECC--CCCEEEEEecCCeEEEEEcC-CCcEEEEEEccCCceeEEEEEEEccCCcEEE-EeecCC----eEEEEECCchhe
Q 021459          200 FSP--NGKFILVGTLDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYIV-SGSEDN----CVYVWDLQQKTM  271 (312)
Q Consensus       200 ~~~--~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg----~i~iwd~~~~~~  271 (312)
                      |+|  +|++++++..++.+++|++. ++..+..+..+.....  ......++++.|+ +++.++    .|..||+.++. 
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~--~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-  393 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT--NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-  393 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE--EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE--eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-
Confidence            999  99999999899999999876 5666666655443322  2123446777665 455555    67777876654 


Q ss_pred             eecccCCccceEEEEEcCCCceEEEeeecCC--eeEEEEeec
Q 021459          272 IQKLDGHTDSVISVTCHPTENKIASAGLDGD--RTVRVWVQD  311 (312)
Q Consensus       272 ~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd--~~v~iw~~~  311 (312)
                      ...+. |...+.+++|+|++++++.+..+..  ..|++|+.+
T Consensus       394 ~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          394 TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            33443 6677899999999999887755433  568899763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=4.2e-25  Score=202.55  Aligned_cols=278  Identities=9%  Similarity=0.050  Sum_probs=199.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      .|.+++|||||++|++++. +.|++|++.++.  ....+..|...+..++|+|||++|++++ ++.|++||+.++. ...
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQ  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEE
Confidence            4789999999999999887 899999998872  3345667888899999999999999887 5699999998753 222


Q ss_pred             eeeccccc----------------EEEEEEecCCCEEEEeecCC---------------------------------cEE
Q 021459          102 TLRGHSDF----------------VFCVNFNPQSNLIVSGSFDE---------------------------------SIR  132 (312)
Q Consensus       102 ~~~~~~~~----------------v~~~~~~~~~~~l~s~~~dg---------------------------------~i~  132 (312)
                      ....+...                +..++|+||++.|++++.|+                                 .|.
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            22222221                36799999999999887765                                 788


Q ss_pred             EEEcCC-CeEEEEee--ecCcCeEEEEEccCCCEEEEeeC-----CCeEEEEeCCCCceeeEcccCCCC---cEEEEEEC
Q 021459          133 IWEVKT-GKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSH-----DGTCKIWDAGEGACLKTLIDDKDP---AVSFAKFS  201 (312)
Q Consensus       133 ~wd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~  201 (312)
                      +||+.+ ++......  .|...+..++| |||+.|+.++.     +..|.+||+.+++....+......   .+..+.|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 77554432  36677899999 99999987654     567999999988765443322221   22356799


Q ss_pred             CCCCEEEEEecCCeEEEEEcC-CCcEEEEEEccCCceeEEEEEEEccCCcEE-EEeecCC--eEEEEECCc-hheeeccc
Q 021459          202 PNGKFILVGTLDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYI-VSGSEDN--CVYVWDLQQ-KTMIQKLD  276 (312)
Q Consensus       202 ~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg--~i~iwd~~~-~~~~~~~~  276 (312)
                      |+|+++++++.++.+++|.+. ++. ...+..+.....  ......++++.| ++++.++  .+++|++.. +.....+.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD--ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE--EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE--eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            999988888889988888765 344 555554443322  222234677765 4566666  899998753 44455555


Q ss_pred             CCccceEEEEEcCCCceEEEeeecCC--eeEEEEe
Q 021459          277 GHTDSVISVTCHPTENKIASAGLDGD--RTVRVWV  309 (312)
Q Consensus       277 ~h~~~v~~l~~~p~~~~l~~~~~dgd--~~v~iw~  309 (312)
                      . ...+..++|+|++++|+....+.+  ..+.+|+
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence            4 567889999999999887765433  3455554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.4e-25  Score=202.12  Aligned_cols=277  Identities=10%  Similarity=0.128  Sum_probs=191.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-EEeeecc-----------------CCEEEEEEccCCCeEEEEcCCC
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALV-HRFVGHS-----------------EGISDLAWSSDSHYICSASDDR   86 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~   86 (312)
                      +..+.|.  ++.+++++.++ | +||..+++.+ ..+..+.                 ..|.+++|+|+ ..++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4557787  66777777787 8 9999988773 4444443                 46999999999 555555 359


Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-----CeEEEEeeecCcC----------
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-----GKCTRVIRAHSMP----------  151 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~~~~~----------  151 (312)
                      .+++||+.++ + ...+..+...+.+++|+||++.++++ .++.|++||+.+     ++.......+...          
T Consensus       102 ~i~~~d~~~~-~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          102 GLVGFDMLAR-K-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             EEEEEETTTT-E-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             EEEEEECCCC-c-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            9999999875 3 23344456678889999999999885 689999999998     7765544333332          


Q ss_pred             ----eEEEEEccCCCEEEEee---------------------------------CCCeEEEEeCCCCceeeEccc-CCCC
Q 021459          152 ----VTSVHFNRDGSLIVSGS---------------------------------HDGTCKIWDAGEGACLKTLID-DKDP  193 (312)
Q Consensus       152 ----v~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~-~~~~  193 (312)
                          +.++.|+|||++|++++                                 .+..|.+||+.+++....... .+..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence                47899999999999887                                 446799999988765433322 2345


Q ss_pred             cEEEEEECCCCCEEEEEecCC-----eEEEEEcCCCcEEEE-EEccCCc-eeEEEEEEEcc--CCcEEEEeecCCeEEEE
Q 021459          194 AVSFAKFSPNGKFILVGTLDS-----TLKLWNYSAGKFLKI-YTGHTNK-KYCITSTFSVT--NGKYIVSGSEDNCVYVW  264 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~dg~i~iw  264 (312)
                      .+..+.|+|||+.|++++.++     .|++||..+++.... ....... ...+......+  +++++++++.||.+++|
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            577889999999999987775     899999998843333 3221111 00011122346  88899999999999999


Q ss_pred             ECC-chheeecccCCccceEE-EEEcCCCceEEEeeecCC-eeEEEEee
Q 021459          265 DLQ-QKTMIQKLDGHTDSVIS-VTCHPTENKIASAGLDGD-RTVRVWVQ  310 (312)
Q Consensus       265 d~~-~~~~~~~~~~h~~~v~~-l~~~p~~~~l~~~~~dgd-~~v~iw~~  310 (312)
                      ++. ++.....+..|...+.. ++|+|+++.|+.++.+.. ..+.||.+
T Consensus       339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            875 45566777777777877 799999998877765432 13444443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.9e-24  Score=179.43  Aligned_cols=262  Identities=11%  Similarity=0.089  Sum_probs=191.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccC--CEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeec-c----
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSE--GISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRG-H----  106 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~-~----  106 (312)
                      +++++++.++.|++||..+++.+..+.....  .+..++|+|+++.+ +++..++.|.+||+.+.. .+..+.. +    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEcCCcccc
Confidence            4788999999999999999888777653321  47889999999765 455667899999998753 3333331 1    


Q ss_pred             cccEEEEEEecCCCEEEEee------------cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          107 SDFVFCVNFNPQSNLIVSGS------------FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       107 ~~~v~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      ...+..++|+|+++.+++++            .++.|.+||+.+++....+.. ...+..++|+|++++++++  ++.+.
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence            22566789999999988886            579999999999887766654 4457788999999988877  68899


Q ss_pred             EEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEEecCC------------------------eEEEEEcCCCcEEEE
Q 021459          175 IWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDS------------------------TLKLWNYSAGKFLKI  229 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~------------------------~i~v~d~~~~~~~~~  229 (312)
                      +||+.+++....+.... ....   .++|++..++..+..+                        .|.+||..+++....
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          158 VMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             EEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            99999888765553322 1112   5788888765544322                        468999988876421


Q ss_pred             -EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          230 -YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       230 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                       +..+......   ....+++++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|++++.  ++.|++|
T Consensus       235 ~~~~~~~~~~~---~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~i~v~  306 (337)
T 1pby_B          235 EVRIMDVFYFS---TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA--LGDLAAY  306 (337)
T ss_dssp             EEEECSSCEEE---EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB--SSEEEEE
T ss_pred             ecCCCCCceee---EEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcC--CCcEEEE
Confidence             2222222222   2334788888877  799999999988777666533 45789999999999888764  5689999


Q ss_pred             eec
Q 021459          309 VQD  311 (312)
Q Consensus       309 ~~~  311 (312)
                      +..
T Consensus       307 d~~  309 (337)
T 1pby_B          307 DAE  309 (337)
T ss_dssp             ETT
T ss_pred             ECc
Confidence            864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=8.3e-25  Score=195.27  Aligned_cols=273  Identities=11%  Similarity=0.037  Sum_probs=190.7

Q ss_pred             cccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcceEEEeeecc-CCEEEEEEccCCCeEEEEcC---CCeEEEEeCCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLALVHRFVGHS-EGISDLAWSSDSHYICSASD---DRTLRIWDART   95 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~   95 (312)
                      +..+|.+++|+|||+.||+++. ||+++||++.+++. ..+..|. ..+..++|+|| +++++++.   +....+|.+..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            4668999999999999999877 99999999865554 4455555 58999999999 77777765   45556654422


Q ss_pred             --CceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC--
Q 021459           96 --PFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD--  170 (312)
Q Consensus        96 --~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  170 (312)
                        ..... .+.... .....+|+|+++. +++.+.++.+.+||+.+++.......+.   .+++|+|||++++.++.+  
T Consensus        98 ~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           98 SRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             cCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence              11111 222111 2335678888753 3444445556699999987665544333   789999999999988777  


Q ss_pred             --CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC--eEEEEEcCCCcEEEEEEccCCceeEE-----E
Q 021459          171 --GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCI-----T  241 (312)
Q Consensus       171 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~-----~  241 (312)
                        +.|.+||+.+++.. .+ ..+...+...+|+|||++|+++..++  .|++||+.+++.. .+..+......+     .
T Consensus       173 ~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred             CCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence              78999999877654 33 33445567889999999999888888  8999999988876 554443321111     1


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ...+.+++.++++++.+|.+++|++  ++...   ...+.+.+++|+ +++.+++++.+. ..-.+|.+
T Consensus       250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~-~p~~l~~~  311 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLS-TPPRIVSL  311 (582)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETT-EEEEEEEE
T ss_pred             ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCC-CCCeEEEE
Confidence            1113477889999999999999999  44433   234678899999 988888887664 33344443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2e-24  Score=204.78  Aligned_cols=286  Identities=17%  Similarity=0.127  Sum_probs=211.4

Q ss_pred             eeeecccccce-------EEEEECCCCCEEEEEeCC------CeEEEEeCCCcceE------------------------
Q 021459           15 FKTLTAHSRAV-------SCVKFSNDGTLLASASLD------KTVIIWSASSLALV------------------------   57 (312)
Q Consensus        15 ~~~~~~h~~~v-------~~~~~s~~~~~l~t~~~d------~~i~vw~~~~~~~~------------------------   57 (312)
                      .+.+..|...+       ..++|+|||+++++++.+      ..|.+|+..+++..                        
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            35677888888       999999999977777754      35777776544321                        


Q ss_pred             -------------------------EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459           58 -------------------------HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC  112 (312)
Q Consensus        58 -------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~  112 (312)
                                               ..+.+|...+.++.|+++ .++++++.++.+.+|.+.........+..|. .+..
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~  249 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP  249 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence                                     123456677888889888 6677778888889997643222334444454 3456


Q ss_pred             EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-----------cCcCeEEEEEc-cCCCEEEEeeCCCeEEEEeCCC
Q 021459          113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-----------HSMPVTSVHFN-RDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       113 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      .+|+|+++.++++ .++.|++||+...+. ..+..           |...+..++|+ |+|+.++.++ ++.+.+|+...
T Consensus       250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          250 RHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             eeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence            7999999988887 488999999954443 34333           33468899999 9999998887 78999999887


Q ss_pred             CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE-EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459          181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK-LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN  259 (312)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  259 (312)
                      +.... +.......+..+.|+ +|+.|+.++.++.+. +||...++..... .+....   ......+++++|++++.++
T Consensus       327 ~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~---~~~~~SpDG~~la~~~~~~  400 (1045)
T 1k32_A          327 TYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNV---FAMGVDRNGKFAVVANDRF  400 (1045)
T ss_dssp             SBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSE---EEEEECTTSSEEEEEETTS
T ss_pred             CceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccce---eeeEECCCCCEEEEECCCC
Confidence            66433 322222257778899 999999988888888 9998877654333 443332   2334458899999999999


Q ss_pred             eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC--------CeeEEEEeec
Q 021459          260 CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG--------DRTVRVWVQD  311 (312)
Q Consensus       260 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg--------d~~v~iw~~~  311 (312)
                      .|++||+.+++....+.+|...+.+++|+|++++|++++.++        +.+|++|+.+
T Consensus       401 ~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          401 EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            999999998877777778888999999999999999988754        4689999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.3e-24  Score=206.11  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=215.0

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ...+.+|...+.++.|+++ .++++++.++.+++|.... +.....+..|. .+..++|+|+|+.|+.+ .++.|.+||+
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            3456789999999999998 6777888889999997543 33334444454 46678999999999887 4899999998


Q ss_pred             CCCceeeeeeec-----------ccccEEEEEEe-cCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-CeEEEEEccC
Q 021459           94 RTPFDCLKTLRG-----------HSDFVFCVNFN-PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-PVTSVHFNRD  160 (312)
Q Consensus        94 ~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~  160 (312)
                      ... . +..+.+           |...+.+++|+ ||++.+++++ ++.|.+|++..++... +..|.. .+..++|+ +
T Consensus       273 ~~~-~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          273 DTE-K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             TTC-C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-S
T ss_pred             Cce-E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-C
Confidence            432 2 323333           34468899999 9999988887 7899999998876543 455666 78999999 9


Q ss_pred             CCEEEEeeCCCeEE-EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          161 GSLIVSGSHDGTCK-IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       161 ~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      |+.++.++.++.+. +||+..+... .+. .+...+..++|+|+|++|++++.++.|++||+.+++.......+......
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            99999988888888 8998776543 333 44456788899999999999999999999999999887777666554333


Q ss_pred             EEEEEEccCCcEEEEeecCC----------eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          240 ITSTFSVTNGKYIVSGSEDN----------CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +   .+.+++++|++++.++          .|++||+.+++ ...+..|...+..++|+|++++|++++.++  ..++|+
T Consensus       426 ~---~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~--~~~~~~  499 (1045)
T 1k32_A          426 F---TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS--LDPSPD  499 (1045)
T ss_dssp             E---EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC--CCCEEC
T ss_pred             e---EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc--CCcCcc
Confidence            3   3357899998887654          99999998776 667778888899999999999999888543  344443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=3e-23  Score=173.33  Aligned_cols=268  Identities=16%  Similarity=0.254  Sum_probs=179.0

Q ss_pred             CCCeEEEEeC--CCcceEE-EeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCc-eeeeeeecccccEEEEE
Q 021459           42 LDKTVIIWSA--SSLALVH-RFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPF-DCLKTLRGHSDFVFCVN  114 (312)
Q Consensus        42 ~d~~i~vw~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~  114 (312)
                      .++.|.+|.+  .+++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.++. +.+.....+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            3456777754  4454432 3344566778899999999 555544   6899999986543 23334345666778899


Q ss_pred             EecCCCEEEEee-cCCcEEEEEcCC-CeE--EEEeeec---------CcCeEEEEEccCCCEEEEeeCCCeEEEEeCC-C
Q 021459          115 FNPQSNLIVSGS-FDESIRIWEVKT-GKC--TRVIRAH---------SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-E  180 (312)
Q Consensus       115 ~~~~~~~l~s~~-~dg~i~~wd~~~-~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~  180 (312)
                      |+|++++|++++ .++.|.+||+.. +..  +..+...         ...+.+++|+|+|+++++...++.|.+||+. +
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888887 678999999963 322  2222211         1237789999999977777778899999998 4


Q ss_pred             Cceee--EcccCCCCcEEEEEECCCCCEEEE-EecCCeEEEEEcCC--CcEE--EEEEccCCc---eeEEEEEEEccCCc
Q 021459          181 GACLK--TLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSA--GKFL--KIYTGHTNK---KYCITSTFSVTNGK  250 (312)
Q Consensus       181 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~--~~~~--~~~~~~~~~---~~~~~~~~~~~~~~  250 (312)
                      ++...  .+..........++|+|+|+++++ ...++.|.+|++..  ++..  ..+......   ..........++++
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            43321  112222334566889999996666 45688999999874  4432  222222211   01222233457888


Q ss_pred             EE-EEeecCCeEEEEECCch---heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          251 YI-VSGSEDNCVYVWDLQQK---TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       251 ~l-~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +| ++...++.|.+|++...   +.+..+..+...+..++|+|++++|++++.+ +++|.+|.+|
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~d  316 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN-TDNATLYARD  316 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT-TTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC-CCcEEEEEEe
Confidence            76 56667899999999732   4445555666678999999999998887754 3689999764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=3.6e-23  Score=172.09  Aligned_cols=268  Identities=12%  Similarity=0.177  Sum_probs=179.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCC-CeEEEEeCC--Ccc--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEe
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLD-KTVIIWSAS--SLA--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWD   92 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d-~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd   92 (312)
                      ..|...+.+++|+|++++|++++.+ +.|++|++.  +++  .+..+..+ ..+..++|+|++++|++++ .++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3477789999999999998888876 999999987  444  33444433 3788999999999876665 488999999


Q ss_pred             CCCC--ceeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCC-CeEEE----Eeee-cCcCeEEEEEccCCCE
Q 021459           93 ARTP--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKT-GKCTR----VIRA-HSMPVTSVHFNRDGSL  163 (312)
Q Consensus        93 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~  163 (312)
                      +..+  .........+ ..+.+++|+|+++.+++++ .++.|.+||+.+ ++...    .... ....+..++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            8422  1233333333 4578899999999888777 889999999987 54432    2222 2346788999999997


Q ss_pred             EEEe-eCCCeEEEEeCCC--Cce--eeEcc---cC--CCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcC--CCc--EEE
Q 021459          164 IVSG-SHDGTCKIWDAGE--GAC--LKTLI---DD--KDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYS--AGK--FLK  228 (312)
Q Consensus       164 l~~~-~~d~~i~iwd~~~--~~~--~~~~~---~~--~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~~--~~~  228 (312)
                      ++++ ..++.+.+||+..  +..  .....   ..  .......++|+|++++|+++ ..++.|++||+.  ++.  .+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            7555 4789999999853  332  11111   11  11235568899999988755 478999999997  332  333


Q ss_pred             EEEccCCceeEEEEEEEccCCcEEEEee-cCCeEEEEEC--Cchh--eeecccCCccceEEEEEcCCCce
Q 021459          229 IYTGHTNKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDL--QQKT--MIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~--~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      .+..+.. ...   ....+++++|++++ .++.|.+|++  .+++  .+..+.. .....+++|.|+.+.
T Consensus       272 ~~~~~~~-~~~---~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          272 FQPTETQ-PRG---FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEECSSS-CCC---EEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC--
T ss_pred             eecCCCc-cce---EEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCC
Confidence            3433322 222   22346788777766 6899999954  3442  3333433 234567778776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=5.1e-23  Score=170.68  Aligned_cols=270  Identities=11%  Similarity=0.117  Sum_probs=180.4

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcce-EEEeeeccCCEEEEEEccCCCeEEEEcCCC---eEEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLAL-VHRFVGHSEGISDLAWSSDSHYICSASDDR---TLRI   90 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~   90 (312)
                      ..+..+...+ .++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++|+++..++   .|.+
T Consensus        34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v  112 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQS  112 (331)
T ss_dssp             EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred             eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence            3344455666 9999999997666655 88999999998887 666666666655599999999999655553   8999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEe-ecCCc-EEEEEcCCCeEEE----EeeecCcCeEEEEEccCCCEE
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG-SFDES-IRIWEVKTGKCTR----VIRAHSMPVTSVHFNRDGSLI  164 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l  164 (312)
                      ||+.+. +.+..+..+ ....+++|+|++++++++ ..++. |.+|++.....+.    ...........++|+|+|+++
T Consensus       113 ~d~~~~-~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          113 YSFLKN-KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             EETTTT-EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             EECCCC-CeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            999875 444455433 346899999999865555 55588 9999987543321    111234557899999999965


Q ss_pred             E-EeeCCCeEEEEeCCCCce---eeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcE--EEEEEcc----
Q 021459          165 V-SGSHDGTCKIWDAGEGAC---LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKF--LKIYTGH----  233 (312)
Q Consensus       165 ~-~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~~~~----  233 (312)
                      + ++..++.|.+||+.+++.   +..+...  .....++|+|+|++++++. .++.|.+||..+++.  +..+...    
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  268 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID  268 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence            5 455688999999998876   5554332  3345678999999776654 577899999988876  3333322    


Q ss_pred             CCceeEEEEEEEccCCcEEE-EeecCCeEEEEECCchheeecccCCccceEEEEEcCCC
Q 021459          234 TNKKYCITSTFSVTNGKYIV-SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE  291 (312)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~  291 (312)
                      .............+++++|+ ++..++.|.+||+..... ..+.+....-....++|+.
T Consensus       269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTTCCCBSCEEECCCC-
T ss_pred             CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceecccccCCeEEECCcc
Confidence            11111101112346777765 555677999999976543 2333333322234456654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.1e-24  Score=199.19  Aligned_cols=277  Identities=9%  Similarity=0.036  Sum_probs=187.5

Q ss_pred             eeccccc---ceEEEEECCCCCEEEEEeCC---------CeEEEEeCCCcceEEEee---eccCCEEEEEEccCCCeEEE
Q 021459           17 TLTAHSR---AVSCVKFSNDGTLLASASLD---------KTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICS   81 (312)
Q Consensus        17 ~~~~h~~---~v~~~~~s~~~~~l~t~~~d---------~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~   81 (312)
                      .+..|..   .|.+++|||||++|++++.+         +.+.+||+.+++. ..+.   +|...+..++|+|||+.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence            3445554   49999999999999998764         7888999998875 2332   34445889999999999999


Q ss_pred             EcCCCeEEEEeCCCCceeeeeeeccccc------------------EEEEEEecCCCEEEEeecCC--------------
Q 021459           82 ASDDRTLRIWDARTPFDCLKTLRGHSDF------------------VFCVNFNPQSNLIVSGSFDE--------------  129 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~s~~~dg--------------  129 (312)
                      ++. +.|++||+.++.. ......+...                  +.+++|+||++.|++++.++              
T Consensus       131 ~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             EET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             EEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            875 7999999877532 2222222222                  27899999999999887553              


Q ss_pred             --------------------cEEEEEcCCCeEEEEeeec------CcCeEEEEEccCCCEEEEeeC----CCeEEEEeCC
Q 021459          130 --------------------SIRIWEVKTGKCTRVIRAH------SMPVTSVHFNRDGSLIVSGSH----DGTCKIWDAG  179 (312)
Q Consensus       130 --------------------~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~  179 (312)
                                          .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|.+||+.
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence                                7999999888754555443      456889999999998876643    3579999998


Q ss_pred             CCceeeEcccCCCCcE----EEEEECCCCCEEEEE--ecCC------eEEEEE-cCCCcE--EEEEEccCCceeEEEEEE
Q 021459          180 EGACLKTLIDDKDPAV----SFAKFSPNGKFILVG--TLDS------TLKLWN-YSAGKF--LKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~--~~d~------~i~v~d-~~~~~~--~~~~~~~~~~~~~~~~~~  244 (312)
                      +++............+    ....|+|||+.|+..  ..++      .|++|| ...+..  ...+......  ......
T Consensus       289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~--~~~~~~  366 (723)
T 1xfd_A          289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD--VTKILA  366 (723)
T ss_dssp             TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC--EEEEEE
T ss_pred             CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE--EEeeeE
Confidence            8876544322221211    245799999977754  4566      566677 334330  2333222111  122223


Q ss_pred             EccCCcEEEEeecC---CeEEEEECCchh--eeecccC---CccceEEEEEcCCCceEEEee
Q 021459          245 SVTNGKYIVSGSED---NCVYVWDLQQKT--MIQKLDG---HTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       245 ~~~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +.++++.|+..+.+   +.+++|++....  ....+..   |...+..++|+|++++|+...
T Consensus       367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            44778888655444   889999986432  3334443   567788999999999887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.6e-24  Score=186.08  Aligned_cols=202  Identities=19%  Similarity=0.165  Sum_probs=156.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----------ceEE-----EeeeccCCEEEEEEccCCCeEE----E
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----------ALVH-----RFVGHSEGISDLAWSSDSHYIC----S   81 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~l~----~   81 (312)
                      +...++.+++++++.++++++.++ +++|+....          ..+.     ....+...|.+++|+|++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            445688999999999999999988 888764321          0111     1123566799999999999999    7


Q ss_pred             EcCCCeEEEEeCCCC-----c-----eeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCc
Q 021459           82 ASDDRTLRIWDARTP-----F-----DCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM  150 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~-----~-----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  150 (312)
                      ++.|+.|++||+.+.     .     .....+.+|...|.+++|+|+ +++|++++.||+|++||+++++.......|..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            889999999997542     0     124556779999999999998 78999999999999999999877666667888


Q ss_pred             CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEE-ecCC------eEE
Q 021459          151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVG-TLDS------TLK  217 (312)
Q Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-~~d~------~i~  217 (312)
                      .+.+++|+|+|++|++|+.||.|++||.+ ++....+...      +...+..+.|++++.++++. ..+|      .++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            99999999999999999999999999998 4433333221      11257778899988777553 3343      389


Q ss_pred             EEEcCCC
Q 021459          218 LWNYSAG  224 (312)
Q Consensus       218 v~d~~~~  224 (312)
                      +||++..
T Consensus       273 i~~l~~~  279 (434)
T 2oit_A          273 MALLPKK  279 (434)
T ss_dssp             EEECCCT
T ss_pred             EEEeccC
Confidence            9999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=4.7e-24  Score=173.51  Aligned_cols=235  Identities=14%  Similarity=0.183  Sum_probs=170.0

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeec-cCCEEEEEEccCCCeEEEEc--CCCeEEEE
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGH-SEGISDLAWSSDSHYICSAS--DDRTLRIW   91 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~v~~w   91 (312)
                      ..+..|...|.+++|+|++++|++++ ++.|++|+..+ ++.......+ ...+.+++|+|++++|++++  .++...+|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            34567899999999999999999987 78999999998 7776555555 36788999999999999988  33445555


Q ss_pred             --eCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcC--CCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           92 --DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVK--TGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        92 --d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                        +..+.  ....+..+ ..+.+++|+|+++.++ +++.++.+++|++.  +++ ...+..+...+.++.|+|+++.++.
T Consensus       114 ~~~~~~~--~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          114 LLPSTGG--TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             EEETTCC--CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEE
T ss_pred             EEECCCC--ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEE
Confidence              44443  23334333 3488899999999877 77889999999863  343 3455567778999999999998876


Q ss_pred             ee-CCCeEEEEeCC-CCceeeEcccCCCCcEEEEEECCCCCEEEEEecC-----------CeEEEEEcCCCcEEEEE--E
Q 021459          167 GS-HDGTCKIWDAG-EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-----------STLKLWNYSAGKFLKIY--T  231 (312)
Q Consensus       167 ~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~--~  231 (312)
                      ++ .++.+++|++. .+.....+. .+...+..+.|+|++++|++++.+           +.|++||+.+++.....  .
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence            66 58899999875 344444443 334456778899999999988765           56999999887654433  2


Q ss_pred             ccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459          232 GHTNKKYCITSTFSVTNGKYIVSGSEDN  259 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg  259 (312)
                      .+......+   .+.++++.|++++.+.
T Consensus       269 ~~~~~~~~~---~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSP---NWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSC---CBCTTSSEEEEEEECC
T ss_pred             CCCcccccc---eECCCCCEEEEEEecc
Confidence            444332222   2347788887776553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=1.2e-22  Score=172.09  Aligned_cols=292  Identities=12%  Similarity=0.106  Sum_probs=194.8

Q ss_pred             ceeeecccccceEE-----EEECCCCCEEEEEeC-CC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459           14 HFKTLTAHSRAVSC-----VKFSNDGTLLASASL-DK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        14 ~~~~~~~h~~~v~~-----~~~s~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      ....+..|......     .+|||||++|+.++. ++  .|.+|+..+++......++...+..++|+||++.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34556677766666     889999999988877 66  48888998888766666665555577899999999999999


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEE--EEecCCCEEEEe----------------------ecCCcEEEEEcCCCeE
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCV--NFNPQSNLIVSG----------------------SFDESIRIWEVKTGKC  141 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~----------------------~~dg~i~~wd~~~~~~  141 (312)
                      +.+++||+.++.. ......+...+...  .++|+++.++..                      +.+..|.+||+.+++.
T Consensus       102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            9999999987643 33333444444333  348899887742                      2346799999998875


Q ss_pred             EEEeeecCcCeEEEEEcc-CCCEEEEeeCC------CeEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCCEEEEEec-
Q 021459          142 TRVIRAHSMPVTSVHFNR-DGSLIVSGSHD------GTCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGKFILVGTL-  212 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-  212 (312)
                      .. +..+...+..+.|+| +|+.++....+      ..|.++|...+. ...+..... ..+....|+|||+.|+..+. 
T Consensus       181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence            44 444566788999999 99988876653      368888876543 333333222 24566789999997766443 


Q ss_pred             CC----eEEEEEcCCCcEEEEEEccCCceeEEE---EEEEccCCcEEEEe---------ecCCeEEEEECCchheeeccc
Q 021459          213 DS----TLKLWNYSAGKFLKIYTGHTNKKYCIT---STFSVTNGKYIVSG---------SEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       213 d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      ++    .|++||+.+++........ .......   .....++++.|+..         ..+..|.+||+.+++. ..+.
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~  336 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA  336 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred             CCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence            22    3999999988754332211 1000000   00123556666543         5567999999987654 4444


Q ss_pred             CCcc-----------ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          277 GHTD-----------SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       277 ~h~~-----------~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+..           .+..++|+|+++.|+.++.. ++...||.++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~  381 (388)
T 3pe7_A          337 RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLAT  381 (388)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEE
T ss_pred             cccCcccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEE
Confidence            4444           47888999999999887753 3556677664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.7e-22  Score=167.69  Aligned_cols=244  Identities=10%  Similarity=0.059  Sum_probs=178.7

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeec-----cCCEEEEEEccCCCeEEEEc------------CC
Q 021459           24 AVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGH-----SEGISDLAWSSDSHYICSAS------------DD   85 (312)
Q Consensus        24 ~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~------------~d   85 (312)
                      .+..++|+|+++.+ ++++.++.|.+||..+++.+..+...     ...+..++|+|++++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47889999999865 55566789999999998877666531     22567899999999998886            57


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      +.|.+||+.+. +....+.. ...+.+++|+|++++++++  ++.|.+||+.+++....+..+... ..+.|+|+++.++
T Consensus       115 ~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~  189 (337)
T 1pby_B          115 TRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVW  189 (337)
T ss_dssp             CEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCC
T ss_pred             ceEEEEECCCC-cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEe
Confidence            99999999875 33444433 3456778999999988877  688999999999887666544311 1236889988665


Q ss_pred             EeeCCC------------------------eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          166 SGSHDG------------------------TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       166 ~~~~d~------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      ..+..+                        .+.+||+.+++...............+.++|++++++++  ++.|++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence            544332                        468999988776422222233456678899999999888  799999999


Q ss_pred             CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459          222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH  278 (312)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  278 (312)
                      .+++.+..+..... ...+   ...+++++|++++.++.|.+||+.+++.+..+..+
T Consensus       268 ~~~~~~~~~~~~~~-~~~~---~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          268 EKNASIKRVPLPHS-YYSV---NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTEEEEEEECSSC-CCEE---EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCcCcceecCCCc-eeeE---EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            99888777654332 2222   33477888888899999999999988777666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=2.4e-21  Score=162.66  Aligned_cols=274  Identities=12%  Similarity=0.131  Sum_probs=176.6

Q ss_pred             CCEEEEE----eCCCeEEEEeC--CCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC----CeEEEEeCCCC--c-eee
Q 021459           34 GTLLASA----SLDKTVIIWSA--SSLALVHRFVGHSEGISDLAWSSDSHYICSASDD----RTLRIWDARTP--F-DCL  100 (312)
Q Consensus        34 ~~~l~t~----~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~wd~~~~--~-~~~  100 (312)
                      ..+++.|    +.++.|.+|.+  .+++.......+...+..++|+|++++|++++.+    +.+.+|++...  . ..+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            3345555    34578888865  4454433222266777889999999999998875    79999987642  1 223


Q ss_pred             eeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEEe---eec-----------CcCeEEEEEccCCCEEE
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRVI---RAH-----------SMPVTSVHFNRDGSLIV  165 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~  165 (312)
                      .....+......+++  +++.+++++ .++.|.+|++.....+...   ..+           ...+.+++|+|+|++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            333334445566666  778777766 5789999999754322111   011           12347899999999665


Q ss_pred             Eee-CCCeEEEEeCCCCce------e------eEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEE--E
Q 021459          166 SGS-HDGTCKIWDAGEGAC------L------KTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLK--I  229 (312)
Q Consensus       166 ~~~-~d~~i~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~--~  229 (312)
                      ++. .++.+.+|++.....      +      .............++|+|+|+++++++ .++.|.+||+.+++...  .
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            554 578999998765331      1      112222334466788999999887776 68999999998775422  2


Q ss_pred             EEccCCceeEEEEEEEccCCcEEEEeec--CCeEEEEECC--chh--eeecccCCccceEEEEEcCCCceEEEeeecCCe
Q 021459          230 YTGHTNKKYCITSTFSVTNGKYIVSGSE--DNCVYVWDLQ--QKT--MIQKLDGHTDSVISVTCHPTENKIASAGLDGDR  303 (312)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~  303 (312)
                      +................+++++|+++..  ++.|.+|++.  +++  .+..+.. ...+..++|+|++++|++++.+ ++
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~-~~  328 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD-TN  328 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT-TT
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC-CC
Confidence            2222211111122334578888866554  5899999985  233  3344443 4567899999999998887754 46


Q ss_pred             eEEEEeec
Q 021459          304 TVRVWVQD  311 (312)
Q Consensus       304 ~v~iw~~~  311 (312)
                      +|.+|.+|
T Consensus       329 ~v~v~~~d  336 (361)
T 3scy_A          329 VIQIFERD  336 (361)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEE
Confidence            89998765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=3.7e-22  Score=166.48  Aligned_cols=239  Identities=12%  Similarity=0.074  Sum_probs=173.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeecc-CCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeee
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHS-EGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      .+++++++.++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+. +....+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEE
Confidence            35678889999999999999999999988877776443 2578899999998654 5567899999999875 3333333


Q ss_pred             c-c-----cccEEEEEEecCCCEEEEeecC------------CcEEEEEcCCCeEE---EEeeecCcCeEEEEEccCCCE
Q 021459          105 G-H-----SDFVFCVNFNPQSNLIVSGSFD------------ESIRIWEVKTGKCT---RVIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus       105 ~-~-----~~~v~~~~~~~~~~~l~s~~~d------------g~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~  163 (312)
                      . +     ...+..++|+|+++++++++.+            +.|.+||+.+++..   ..+. +...+.+++|+|+++ 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence            2 2     2236788999999999988865            89999999875432   2333 334578899999999 


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEcccCC----------------------------------------------------
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTLIDDK----------------------------------------------------  191 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------------------------------  191 (312)
                      +++++.  .|.+||+.+++....+....                                                    
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            555443  49999998877655432211                                                    


Q ss_pred             ---------------CCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          192 ---------------DPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       192 ---------------~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                                     ......+.++| ++++++++  ++.|.+||+.+++.+..+..... ...+   ...++++.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-~~~~---~~s~dg~~l~~~  312 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-YYCV---AFDKKGDKLYLG  312 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC-CCEE---EECSSSSCEEEE
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC-ccce---EECCCCCEEEEe
Confidence                           00223456779 99998888  88999999999988777654332 2222   234677777778


Q ss_pred             ecCCeEEEEECCchheeeccc
Q 021459          256 SEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       256 ~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      +.++.|.+||+.+.+.+..++
T Consensus       313 ~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          313 GTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SBSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCeEEEEeccccceeeeee
Confidence            889999999998877766554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=3.8e-21  Score=160.54  Aligned_cols=248  Identities=12%  Similarity=0.178  Sum_probs=165.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeC---CCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASL---DKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDA   93 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~   93 (312)
                      .+......++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|+|++|++++ .++.+.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4556777899999999 555443   6899999997654  4445556777889999999999888887 6799999998


Q ss_pred             CCCc--eeeeeeec---------ccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEE--eee-cCcCeEEEEEc
Q 021459           94 RTPF--DCLKTLRG---------HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRV--IRA-HSMPVTSVHFN  158 (312)
Q Consensus        94 ~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~--~~~-~~~~v~~~~~~  158 (312)
                      ....  ..+.....         +...+.+++|+|+++.+++...++.|.+||+. +++....  +.. .......++|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            5321  22222221         11247889999999966666668899999998 5543321  222 22357789999


Q ss_pred             cCCCEEEE-eeCCCeEEEEeCCC--Ccee--eEcccCC-----CCcEEEEEECCCCCEEEE-EecCCeEEEEEcCCC---
Q 021459          159 RDGSLIVS-GSHDGTCKIWDAGE--GACL--KTLIDDK-----DPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSAG---  224 (312)
Q Consensus       159 ~~~~~l~~-~~~d~~i~iwd~~~--~~~~--~~~~~~~-----~~~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~---  224 (312)
                      |+|+++++ ...++.+.+|++..  ++..  ..+....     ......++|+|+|++|++ ...++.|.+||+...   
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~  275 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL  275 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence            99996655 56788999998764  4321  1111111     133667889999998754 456899999998632   


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeec-CCeEEEEEC--Cchhe
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE-DNCVYVWDL--QQKTM  271 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~  271 (312)
                      +.+..+..+......+  . ..+++++|++++. ++.|.+|++  .++++
T Consensus       276 ~~~~~~~~~~~~~~~~--~-~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          276 TLIQQISTEGDFPRDF--D-LDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEEEEECSSSCCCEE--E-ECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEeEEEecCCCCcCeE--E-ECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            3333444333222222  2 3478888777665 599999954  44443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.8e-23  Score=189.81  Aligned_cols=280  Identities=12%  Similarity=0.061  Sum_probs=181.5

Q ss_pred             ceEEEEECCCCCEEEEEeC---------CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           24 AVSCVKFSNDGTLLASASL---------DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+.+++|||||++|++++.         ++.|++||+.+++.+.. ......+..++|+|||+.|+.+. ++.|++|++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            3899999999999998876         78999999998765210 11135688899999999999885 7899999997


Q ss_pred             CCceeeeeeecccccE-----------------EEEEEecCCCEEEEeecCC----------------------------
Q 021459           95 TPFDCLKTLRGHSDFV-----------------FCVNFNPQSNLIVSGSFDE----------------------------  129 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~s~~~dg----------------------------  129 (312)
                      ++........++...+                 .+++|+|||+.|++++.|.                            
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            6543221222333322                 4799999999999887652                            


Q ss_pred             ------cEEEEEcCCCeEE---EE-----eeecCcCeEEEEEccCCCEEEEeeCC----CeEEEEe----CCCCceeeEc
Q 021459          130 ------SIRIWEVKTGKCT---RV-----IRAHSMPVTSVHFNRDGSLIVSGSHD----GTCKIWD----AGEGACLKTL  187 (312)
Q Consensus       130 ------~i~~wd~~~~~~~---~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~  187 (312)
                            .|++||+.+++..   ..     +..|...+..++|+||++++++....    ..|.+||    ..+++.....
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence                  6889999887642   11     22466678999999998877764432    2488899    7766544322


Q ss_pred             c---cCCCCcEE-----EEEECCCCCEEEE--EecCC--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          188 I---DDKDPAVS-----FAKFSPNGKFILV--GTLDS--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       188 ~---~~~~~~~~-----~~~~~~~~~~l~~--~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      .   ..+...+.     ...|+|+|+.++.  ...++  .|.+||+.+++. ..+..+.....  ...++  +++.|+..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~--~~~~~--d~~~i~~~  373 (719)
T 1z68_A          299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAI--NIFRV--TQDSLFYS  373 (719)
T ss_dssp             EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEE--EEEEE--CSSEEEEE
T ss_pred             ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEE--EEEEE--eCCEEEEE
Confidence            1   12222222     4579999996654  43455  577777766663 33333222222  22333  45555444


Q ss_pred             ec-----CCeEEEEECCc--hh-eeec----ccCCccceEEEEEcCCCceEEEe-eecCCeeEEEEee
Q 021459          256 SE-----DNCVYVWDLQQ--KT-MIQK----LDGHTDSVISVTCHPTENKIASA-GLDGDRTVRVWVQ  310 (312)
Q Consensus       256 ~~-----dg~i~iwd~~~--~~-~~~~----~~~h~~~v~~l~~~p~~~~l~~~-~~dgd~~v~iw~~  310 (312)
                      +.     ++.+++|.+..  +. ....    +.+|...+..+.|+|++++++.. +.+....+.+|+.
T Consensus       374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            44     48888987643  21 1222    23366778899999999887743 3333346667754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=185.44  Aligned_cols=278  Identities=10%  Similarity=0.098  Sum_probs=187.5

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC---CEEEEEEccCCCeEEEEcC---------CCeEEEEeCC
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSE---GISDLAWSSDSHYICSASD---------DRTLRIWDAR   94 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~v~~wd~~   94 (312)
                      .++|+|+|+++++ +.|+.|++|+..+++....+..|..   .+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6799999966555 4699999999999887666655544   4899999999999998876         6899999998


Q ss_pred             CCceee-eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-eecCcCe-----------------EEE
Q 021459           95 TPFDCL-KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMPV-----------------TSV  155 (312)
Q Consensus        95 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v-----------------~~~  155 (312)
                      ++.... ..+   ...+..++|+|||+.|+++. ++.|++||+.+++..... ..+...+                 ..+
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            753200 222   24577899999999999875 789999999888765432 1222212                 479


Q ss_pred             EEccCCCEEEEeeCCC----------------------------------eEEEEeCCCCcee--eEc-----ccCCCCc
Q 021459          156 HFNRDGSLIVSGSHDG----------------------------------TCKIWDAGEGACL--KTL-----IDDKDPA  194 (312)
Q Consensus       156 ~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--~~~-----~~~~~~~  194 (312)
                      +|+|||+.|+.++.|.                                  .+.+||+.+++..  ..+     ...+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887652                                  7889999887642  111     1123445


Q ss_pred             EEEEEECCCCCEEEEEecC----CeEEEEE----cCCCcEEEEE----EccCCceeE--EEEEEEccCCcEEE--EeecC
Q 021459          195 VSFAKFSPNGKFILVGTLD----STLKLWN----YSAGKFLKIY----TGHTNKKYC--ITSTFSVTNGKYIV--SGSED  258 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d----~~i~v~d----~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~l~--~~~~d  258 (312)
                      +..+.|+||++++++....    ..|.+||    ..+++.....    ..+......  .....+.++++.++  +...+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            6778899998776664332    2488899    7666543333    233322110  00112346777544  34455


Q ss_pred             C--eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeec---CCeeEEEEeec
Q 021459          259 N--CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD---GDRTVRVWVQD  311 (312)
Q Consensus       259 g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d---gd~~v~iw~~~  311 (312)
                      |  .|.+||+..++ ...+..+...+..+.+. +++.++..+.+   +++.+++|.++
T Consensus       335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            5  56677776655 44555566667888777 87777766643   34678888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.2e-20  Score=157.67  Aligned_cols=229  Identities=9%  Similarity=0.086  Sum_probs=172.5

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCC---------EEEEEEccCCCeEEEEc--CCCeEEE
Q 021459           23 RAVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEG---------ISDLAWSSDSHYICSAS--DDRTLRI   90 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~--~d~~v~~   90 (312)
                      ..+..++|+|++++++ +...++.|.+||..+++.+..+..+...         +.+++|+|+++++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            4467889999999554 5556799999999999887777654322         78899999999877765  4788999


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee----cCcCeEEEEEccCCCEEEE
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~  166 (312)
                      ||..+. +....+..+...+.+++|+|+++.+++++.++.|.+||+.+++....+..    +...+..++|+|+++++++
T Consensus       169 ~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          169 VDGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EcCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            999875 44555554555577899999999999999999999999999988776654    3445778999999997766


Q ss_pred             eeC-CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          167 GSH-DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       167 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      ++. ++.|.+||..+++....+.....   ..+.++|++++++++. .++.|.+||..+++.+..+.....   ... ..
T Consensus       248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~-~~  320 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH---PNS-LA  320 (353)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE---EEE-EE
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC---CCe-EE
Confidence            654 58999999998887766543322   3467999999766665 689999999999988777654332   122 23


Q ss_pred             EccCCcEEEEeecCC
Q 021459          245 SVTNGKYIVSGSEDN  259 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg  259 (312)
                      ..+++++|+.+..++
T Consensus       321 ~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          321 LSADGKTLYVSVKQK  335 (353)
T ss_dssp             ECTTSCEEEEEEECC
T ss_pred             EcCCCCEEEEEEccc
Confidence            346777666655543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=4.9e-20  Score=154.68  Aligned_cols=262  Identities=14%  Similarity=0.190  Sum_probs=171.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCC----CeEEEEeCCC--cc--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEE
Q 021459           21 HSRAVSCVKFSNDGTLLASASLD----KTVIIWSASS--LA--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIW   91 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d----~~i~vw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~w   91 (312)
                      +......++|+|+|++|++++.+    +.|.+|++..  ++  .+.....+......+++  ++++|++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66677889999999999998875    7999998764  33  23333445556777888  788777665 57899999


Q ss_pred             eCCCCcee--eee---eec--------ccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeE------E-------EE
Q 021459           92 DARTPFDC--LKT---LRG--------HSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKC------T-------RV  144 (312)
Q Consensus        92 d~~~~~~~--~~~---~~~--------~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~------~-------~~  144 (312)
                      ++......  +..   ..+        +...+.+++|+|+++++++++ .++.|.+|++.....      +       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            98643221  111   111        122357899999999766555 478999998875431      1       11


Q ss_pred             eeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCcee--eEcc--cCCCCcEEEEEECCCCCEEEEEecC--CeEE
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGACL--KTLI--DDKDPAVSFAKFSPNGKFILVGTLD--STLK  217 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~  217 (312)
                      ...+......++|+|+|+++++++ .++.|.+||+.++...  ..+.  .........++|+|+|++|+++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223345578999999999887766 6899999998866432  2221  1112335678899999998776654  8999


Q ss_pred             EEEcC--CCcE--EEEEEccCCceeEEEEEEEccCCcEEEEee-cCCeEEEEEC--Cchheeecc-cCCccceEEEEEc
Q 021459          218 LWNYS--AGKF--LKIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDL--QQKTMIQKL-DGHTDSVISVTCH  288 (312)
Q Consensus       218 v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~h~~~v~~l~~~  288 (312)
                      +|++.  +++.  +..+.. ......+   ...+++++|++++ .++.|.+|++  .++++.... ..+...+.||+|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~~~~~~---~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GIHPRNF---IITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SSCCCEE---EECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CCCCceE---EECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99985  4443  333332 1122222   2347888887776 6799999654  455443332 1234568888885

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.2e-21  Score=165.53  Aligned_cols=160  Identities=11%  Similarity=0.133  Sum_probs=129.9

Q ss_pred             ccccceEEEEECCCCCEEE----EEeCCCeEEEEeCCCc--------c---eEEEeeeccCCEEEEEEccC-CCeEEEEc
Q 021459           20 AHSRAVSCVKFSNDGTLLA----SASLDKTVIIWSASSL--------A---LVHRFVGHSEGISDLAWSSD-SHYICSAS   83 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~----t~~~d~~i~vw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~   83 (312)
                      .|...|++++|+|++++|+    +++.|+.|++||+.+.        +   .+..+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3567899999999999999    8889999999998654        1   13455679999999999998 78999999


Q ss_pred             CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-------CcCeEEEE
Q 021459           84 DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-------SMPVTSVH  156 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~  156 (312)
                      .||.|++||+++. .......+|...+.+++|+|++++|++|+.||.|++||++ ++....+..|       ...+.++.
T Consensus       170 ~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          170 ADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence            9999999999876 3444556788999999999999999999999999999998 5545444433       23789999


Q ss_pred             EccCCCEEEEe-eCCC------eEEEEeCCCC
Q 021459          157 FNRDGSLIVSG-SHDG------TCKIWDAGEG  181 (312)
Q Consensus       157 ~~~~~~~l~~~-~~d~------~i~iwd~~~~  181 (312)
                      |++++.++++. ..+|      .+++|++++.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99988776543 3333      3889998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=8.5e-22  Score=167.19  Aligned_cols=277  Identities=12%  Similarity=0.082  Sum_probs=181.6

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           25 VSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      +..++|+|||++|+.....   ..|.+|+..+++......++......+.|+|+|++|+.++.++.|++||+.++.. ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence            7788999999998776543   4688889888765433222222223378999999999999999999999876532 22


Q ss_pred             eeecccccEEE-------------------EEEecCCCEEEEe-----ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459          102 TLRGHSDFVFC-------------------VNFNPQSNLIVSG-----SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus       102 ~~~~~~~~v~~-------------------~~~~~~~~~l~s~-----~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
                      ....+......                   +.++|+++.++..     ..+..|.+||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            22223222222                   2456777665543     34567999999988765444 45667889999


Q ss_pred             cc-CCCEEEEeeCC------CeEEEEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCC
Q 021459          158 NR-DGSLIVSGSHD------GTCKIWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAG  224 (312)
Q Consensus       158 ~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~  224 (312)
                      +| +++.++..+.+      ..|.+||+..+.. ..+.... ...+..+.|+|+|+.|+..+.+     +.|++||+.++
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            99 78877665543      3688888865542 2332221 2246667899999988777544     45999999888


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEee----------------cCCeEEEEECCchheeecccCCcc--------
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS----------------EDNCVYVWDLQQKTMIQKLDGHTD--------  280 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~h~~--------  280 (312)
                      +........ . . .  ..+.+++++++++++                .++.|.+||+.+++. ..+..+..        
T Consensus       275 ~~~~l~~~~-~-~-~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~  348 (396)
T 3c5m_A          275 ENEEVMVMP-P-C-S--HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGD  348 (396)
T ss_dssp             CEEEEEECC-S-E-E--EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTB
T ss_pred             CeEEeeeCC-C-C-C--CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccccccc
Confidence            754433221 1 1 1  344432788887654                357899999987654 34444433        


Q ss_pred             ---ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          281 ---SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       281 ---~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                         .+..++|+|+++.|+.++.++ +...||.++
T Consensus       349 ~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~  381 (396)
T 3c5m_A          349 RQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIAD  381 (396)
T ss_dssp             SSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEE
T ss_pred             ccCCCCCceEccCCCeEEEEecCC-CCceEEEEE
Confidence               256678999999998887543 455677654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.89  E-value=3.9e-21  Score=174.06  Aligned_cols=291  Identities=12%  Similarity=0.069  Sum_probs=195.7

Q ss_pred             eeeecccccceEEEEECCCCCEEEEE--eCCCeEEEEeCCCcceEEEeeeccCCEE---------EEEEc--cCCCe-EE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASA--SLDKTVIIWSASSLALVHRFVGHSEGIS---------DLAWS--SDSHY-IC   80 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~   80 (312)
                      .+.+.+|...+..++|++++-++++.  +.++...+|....+.....+..+...+.         ...|+  |||+. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            34577899999999999887677776  5678899998654444556666666655         66666  99998 77


Q ss_pred             EEcC-CCeEEEEeCC--C-Cceeeeeeec-----ccccEEEEEEecCCCEEEEeecC----------CcEEEEEcCC---
Q 021459           81 SASD-DRTLRIWDAR--T-PFDCLKTLRG-----HSDFVFCVNFNPQSNLIVSGSFD----------ESIRIWEVKT---  138 (312)
Q Consensus        81 ~~~~-d~~v~~wd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------g~i~~wd~~~---  138 (312)
                      .++. +..|.++++.  . + . ...+..     |...+..++|+||++.|++++.+          ..|++||+.+   
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGA-V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCC-C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEECCCCeEEEEcCCCCCCC-C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            6654 5667777765  2 2 1 233333     56678899999999999988876          5799999987   


Q ss_pred             ---CeEEEEee-ecCcCeEEEEEccCCCEEEEeeCC--------CeEEEEeCC-CCc--eeeEcccCCCCcEEEEEECCC
Q 021459          139 ---GKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSHD--------GTCKIWDAG-EGA--CLKTLIDDKDPAVSFAKFSPN  203 (312)
Q Consensus       139 ---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~  203 (312)
                         ++. ..+. .+...+..++|+|||++|+.++.+        ..|.+||+. ++.  ....+...+...+....|+||
T Consensus       174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             ccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence               554 3444 445567788999999999877755        379999998 451  333443333456777889999


Q ss_pred             CCEEEEEecCC--eEEEEEcCCCcEEEEEEccCCce---eE--EEEEEEccCCcEEEEeecCCeEEEE--ECCchheeec
Q 021459          204 GKFILVGTLDS--TLKLWNYSAGKFLKIYTGHTNKK---YC--ITSTFSVTNGKYIVSGSEDNCVYVW--DLQQKTMIQK  274 (312)
Q Consensus       204 ~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~  274 (312)
                      |++++++..++  .|.+||..+++.......+....   +.  +......++++++++++. |.++||  |+..++ +..
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~  330 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD  330 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred             CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence            99777777777  66667765666544333221110   00  011122357889999988 999999  555444 567


Q ss_pred             ccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          275 LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       275 ~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +..|...+..+. ++++..++..+.+.+....+|.++
T Consensus       331 l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          331 AAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             CCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEE
T ss_pred             ecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEE
Confidence            777777777661 445554444444455666666554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.8e-20  Score=156.45  Aligned_cols=272  Identities=10%  Similarity=0.117  Sum_probs=173.7

Q ss_pred             EEEEeCC--CeEEEEeC--CCcceEE--Eee-eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC-CCceeeeeeecc-c
Q 021459           37 LASASLD--KTVIIWSA--SSLALVH--RFV-GHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCLKTLRGH-S  107 (312)
Q Consensus        37 l~t~~~d--~~i~vw~~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~-~~~~~~~~~~~~-~  107 (312)
                      ++.|+..  +.|.+|++  .++++..  ... .....+..++|+|++++|++++.+ .|.+|++. ++ +........ .
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~   82 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecC
Confidence            4444432  45776654  4454322  111 133467889999999999988877 99999986 43 222221110 1


Q ss_pred             ccEEEEEEecCCCE--EEEee-------------cCCcEEEEEcC-CCeEEEEeee----cCcCeEEEEEccCCCEEEEe
Q 021459          108 DFVFCVNFNPQSNL--IVSGS-------------FDESIRIWEVK-TGKCTRVIRA----HSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus       108 ~~v~~~~~~~~~~~--l~s~~-------------~dg~i~~wd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~  167 (312)
                      +...+++|+|+++.  +++++             .+|.+.+|++. .++....+..    +...+.+++|+|+|++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            22445788999984  55553             68999999997 4655433332    44568899999999988876


Q ss_pred             eC-CCeEEEEeCC-CCcee--eEcccC-CCCcEEEEEECCCCCEEEEEec-CCeEEEEEcC--CCcEEE---EEEccCCc
Q 021459          168 SH-DGTCKIWDAG-EGACL--KTLIDD-KDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYS--AGKFLK---IYTGHTNK  236 (312)
Q Consensus       168 ~~-d~~i~iwd~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~~~---~~~~~~~~  236 (312)
                      .. ++.|.+||+. +++..  ..+... +......++|+|+|+++++++. ++.|.+|++.  +++...   .+......
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            54 6799999998 66542  222111 1344677889999999888764 6899999875  455421   22211110


Q ss_pred             ----e-------eEEEEEEEccCCcEEEEeecC-C-----eEEEEECC-chheee---cccCCccceEEEEEcC---CCc
Q 021459          237 ----K-------YCITSTFSVTNGKYIVSGSED-N-----CVYVWDLQ-QKTMIQ---KLDGHTDSVISVTCHP---TEN  292 (312)
Q Consensus       237 ----~-------~~~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~~p---~~~  292 (312)
                          .       ......+..+++++|++++.+ +     .|.+|++. +++...   ....+...+..++|+|   +++
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence                1       222333156789888766543 2     89999986 444332   2333445567889999   799


Q ss_pred             eEEEeeecCCeeEEEEeec
Q 021459          293 KIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|++++.+ +++|++|+++
T Consensus       323 ~l~v~~~~-~~~v~v~~~~  340 (365)
T 1jof_A          323 WMAITDDQ-EGWLEIYRWK  340 (365)
T ss_dssp             EEEEECSS-SCEEEEEEEE
T ss_pred             EEEEEEcC-CCeEEEEEEc
Confidence            99888754 3689999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=5.7e-20  Score=154.56  Aligned_cols=245  Identities=9%  Similarity=0.097  Sum_probs=163.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCC-CcceEEEeeec-cCCEEEEEEccCCCe--EEEEc-------------C
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSAS-SLALVHRFVGH-SEGISDLAWSSDSHY--ICSAS-------------D   84 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~   84 (312)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+..++|+|+|++  ++++.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467889999999999998887 99999986 66554322211 123556899999994  55553             6


Q ss_pred             CCeEEEEeCCCCceeeeeee----cccccEEEEEEecCCCEEEEeec-CCcEEEEEcC-CCeEEE--Eee--ecCcCeEE
Q 021459           85 DRTLRIWDARTPFDCLKTLR----GHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVK-TGKCTR--VIR--AHSMPVTS  154 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~-~~~~~~--~~~--~~~~~v~~  154 (312)
                      ++.+.+|++....+....+.    .+...+.+++|+|+++++++++. ++.|++||+. +++...  .+.  .+...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            88999999864223222222    24457889999999998887664 5789999998 676432  232  13556889


Q ss_pred             EEEccCCCEEEEeeC-CCeEEEEeCC--CCceee---Ec--ccCC--C-C-------cEEEEE-ECCCCCEEEEEecC-C
Q 021459          155 VHFNRDGSLIVSGSH-DGTCKIWDAG--EGACLK---TL--IDDK--D-P-------AVSFAK-FSPNGKFILVGTLD-S  214 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~--~~~~--~-~-------~~~~~~-~~~~~~~l~~~~~d-~  214 (312)
                      ++|+|+|+++++++. ++.+.+|+..  +++...   .+  ....  . .       ....++ |+|+|++|+++..+ +
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999999998887764 6899998764  454321   11  1111  1 1       366788 99999998877543 2


Q ss_pred             -----eEEEEEcC-CCcEEEE---EEccCCceeEEEEEEEcc--CCcEEEEeec-CCeEEEEECCch
Q 021459          215 -----TLKLWNYS-AGKFLKI---YTGHTNKKYCITSTFSVT--NGKYIVSGSE-DNCVYVWDLQQK  269 (312)
Q Consensus       215 -----~i~v~d~~-~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-dg~i~iwd~~~~  269 (312)
                           .|.+|++. +++....   ...+......+  .+.+.  ++++|++++. ++.|.+|++...
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~--a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc--eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 89999996 5654432   22222111112  23322  6888888876 499999988654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=2.6e-20  Score=155.22  Aligned_cols=234  Identities=15%  Similarity=0.120  Sum_probs=165.3

Q ss_pred             EEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc-ccEEEEEEecCCCEEE-EeecCCcEEEEEcCCCeEEEEee
Q 021459           69 DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-DFVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        69 ~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~  146 (312)
                      .+++++++.++++++.++.|.+||+.+. +.+..+..+. .....++|+|+++.++ +...++.|.+||+.+++....+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            3567788889999999999999999875 4444544332 1467889999998654 55568899999999998776665


Q ss_pred             ecC------cCeEEEEEccCCCEEEEeeCC------------CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEE
Q 021459          147 AHS------MPVTSVHFNRDGSLIVSGSHD------------GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFI  207 (312)
Q Consensus       147 ~~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  207 (312)
                      ...      ..+..++|+|+|+++++++.+            +.|.+||+.+++...... ......+..++++|+|+ +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence            332      236789999999999988865            899999998754322111 11122355667999999 5


Q ss_pred             EEEecCCeEEEEEcCCCcEEEEEEccCC------------------------ceeEE-----------------------
Q 021459          208 LVGTLDSTLKLWNYSAGKFLKIYTGHTN------------------------KKYCI-----------------------  240 (312)
Q Consensus       208 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------~~~~~-----------------------  240 (312)
                      ++++  +.|++||..+++.+..+.....                        ....+                       
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            5553  3499999998887766543210                        00000                       


Q ss_pred             ------------------EEEEEcc-CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459          241 ------------------TSTFSVT-NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       241 ------------------~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                                        ......+ ++++++++  ++.|.+||+.+++....+.. ...+.+++|+|++++|++++.  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--  314 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGT--  314 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESB--
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecC--
Confidence                              0111225 78888877  88999999998877766653 234678999999999888654  


Q ss_pred             CeeEEEEeec
Q 021459          302 DRTVRVWVQD  311 (312)
Q Consensus       302 d~~v~iw~~~  311 (312)
                      ++.|++|+.+
T Consensus       315 ~~~v~v~d~~  324 (349)
T 1jmx_B          315 FNDLAVFNPD  324 (349)
T ss_dssp             SSEEEEEETT
T ss_pred             CCeEEEEecc
Confidence            4789999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=2.3e-20  Score=171.06  Aligned_cols=279  Identities=11%  Similarity=0.101  Sum_probs=181.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-----EEEEEEccCCCeEEEEcCC---------CeEE
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-----ISDLAWSSDSHYICSASDD---------RTLR   89 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~v~   89 (312)
                      ....++|+|||.+++++  |+.|++|+..+++....+.+|...     ..+++|+|||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999999886  899999999999877666666532     2458899999999988775         5677


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecCcCe----------------
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHSMPV----------------  152 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v----------------  152 (312)
                      +||+.++.  ...+..+.+.+..++|+|||+.|+.+ .++.|++||+.+++..+... ++...+                
T Consensus        96 ~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           96 IYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            99998753  34456677789999999999999887 46899999998877544221 222212                


Q ss_pred             -EEEEEccCCCEEEEeeCCC------------------------------------eEEEEeCCC---Cc--eeeEccc-
Q 021459          153 -TSVHFNRDGSLIVSGSHDG------------------------------------TCKIWDAGE---GA--CLKTLID-  189 (312)
Q Consensus       153 -~~~~~~~~~~~l~~~~~d~------------------------------------~i~iwd~~~---~~--~~~~~~~-  189 (312)
                       ..+.|+|||+.|+.++.|.                                    .+.+||+.+   +.  ....+.. 
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3488999999998765321                                    477889887   62  1222221 


Q ss_pred             ----CCCCcEEEEEECCCCCEEEEEec----CCeEEEEEcCCCc----EE---EEE-EccCCcee---EEEEEEEccCCc
Q 021459          190 ----DKDPAVSFAKFSPNGKFILVGTL----DSTLKLWNYSAGK----FL---KIY-TGHTNKKY---CITSTFSVTNGK  250 (312)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~----~~---~~~-~~~~~~~~---~~~~~~~~~~~~  250 (312)
                          .+...+..+.|+|||+.++....    +..|++||..+++    +.   ..+ ..+.....   ... ..+.++|+
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~-p~fspDG~  331 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE-PHFTLDGN  331 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC-CEECTTSS
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC-ceEcCCCC
Confidence                13445677889999997665533    3379999998876    21   111 22221111   001 12347888


Q ss_pred             EEE-Eeec-C--CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee---cCCeeEEEEee
Q 021459          251 YIV-SGSE-D--NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL---DGDRTVRVWVQ  310 (312)
Q Consensus       251 ~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~---dgd~~v~iw~~  310 (312)
                      .|+ ..++ +  ..|.+||+..+... .+....-.|..+.. ++++.++..+.   ++.....||.+
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            766 5543 3  46888888765544 33333445555432 44665554443   22334455544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=9.9e-21  Score=168.92  Aligned_cols=231  Identities=12%  Similarity=0.082  Sum_probs=162.8

Q ss_pred             cCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCCceeeeeeeccc-ccEEEEEEecCCCEEEEeec---CCcEEEEEcCC
Q 021459           64 SEGISDLAWSSDSHYICSASD-DRTLRIWDARTPFDCLKTLRGHS-DFVFCVNFNPQSNLIVSGSF---DESIRIWEVKT  138 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~i~~wd~~~  138 (312)
                      ..+|++++|+|||+.|++++. ||.++||++.++ + ...+..+. ..+..++|+|| +.+++++.   +....+|.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-E-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-E-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC-C-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            567999999999999999887 999999998553 3 33444444 57899999999 77777765   44556655433


Q ss_pred             ---CeEEEEeeecCcCeEEEEEccCCCE-EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC-
Q 021459          139 ---GKCTRVIRAHSMPVTSVHFNRDGSL-IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-  213 (312)
Q Consensus       139 ---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-  213 (312)
                         +... .+.. .......+|+|+++. +++.+.++.+.+||+.+++..... ....   ....|+|||++|+.++.+ 
T Consensus        98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~---~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A           98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG---FGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS---CEEEEEEETTEEEEEEEEE
T ss_pred             cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC---ceEEECCCCCEEEEEEEcC
Confidence               2222 2222 223446688888853 334444455569999887644322 2222   556799999999988776 


Q ss_pred             ---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--eEEEEECCchheeecccCCccceEEEE--
Q 021459          214 ---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--CVYVWDLQQKTMIQKLDGHTDSVISVT--  286 (312)
Q Consensus       214 ---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--  286 (312)
                         +.|++||+.+++.. .+..+....   ....+.++|+.|+++..+|  .|++||+.+++.. .+.+|...+..++  
T Consensus       172 ~~~~~i~~~d~~~g~~~-~l~~~~~~~---~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLR-VFDSGEGSF---SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             TTEEEEEEEETTTCCCE-EECCSSCEE---EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             CCCeEEEEEcCCCCCce-EeecCCCcc---ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence               78999999888764 444444332   3334458999999888888  8999999887766 7777777777777  


Q ss_pred             ------EcCCCceEEEeeecCCeeEEEEee
Q 021459          287 ------CHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       287 ------~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                            |+|++..+++++.|  ++++||.+
T Consensus       247 ~~~~~~~spdg~~~~~~~~~--g~~~l~~~  274 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARRE--GRSAVFID  274 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEET--TEEEEEET
T ss_pred             cccceeEcCCCcEEEEEEcC--CcEEEEEE
Confidence                  99999777777755  48999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=6.2e-19  Score=146.13  Aligned_cols=244  Identities=16%  Similarity=0.186  Sum_probs=177.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCC------------------------CeEEEEeCCCcceEEEee-eccCCEEEEEEccC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLD------------------------KTVIIWSASSLALVHRFV-GHSEGISDLAWSSD   75 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d------------------------~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~   75 (312)
                      --+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. ++......++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            35679999999999999888777                        479999998888765443 33457889999999


Q ss_pred             CCeEEEEcCCCeEEEEeCCCCceeeeee---------ecccccEEEEEEec-CCCEEEEee-cCCcEEEEEcCCCeEEEE
Q 021459           76 SHYICSASDDRTLRIWDARTPFDCLKTL---------RGHSDFVFCVNFNP-QSNLIVSGS-FDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        76 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~i~~wd~~~~~~~~~  144 (312)
                      |+++++...++.|++||.......+..+         .++......++++| +++++++.+ .++.|++|| .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888889999999986532233333         23334678899999 788888876 689999999 55666665


Q ss_pred             eeecC----------cCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccC-CCCcEEEEEECC------CCCE
Q 021459          145 IRAHS----------MPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSP------NGKF  206 (312)
Q Consensus       145 ~~~~~----------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~  206 (312)
                      +....          .....++++|+ +.++++...++.|++||..+++.+..+... .......+.++|      +|+.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~  260 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP  260 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence            53222          23789999998 788888888999999999878777665322 233456677888      2322


Q ss_pred             EEEEecCCeEEEEEcCCCcEEEEEE---ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          207 ILVGTLDSTLKLWNYSAGKFLKIYT---GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       207 l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      .++...+..|++||..+++.+..+.   .+......+  . ..+++.++++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i--a-~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI--V-ASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE--E-ECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE--E-ECCCCCEEEEECCCCEEEEEeCCc
Confidence            2223344589999999999888774   222222233  2 346788889999999999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=6.7e-18  Score=137.00  Aligned_cols=242  Identities=12%  Similarity=0.217  Sum_probs=172.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee------eccCCEEEEEEc-cCCCeEEEEcC-CCeEEEE
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV------GHSEGISDLAWS-SDSHYICSASD-DRTLRIW   91 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-d~~v~~w   91 (312)
                      ++-....+++++|+++++++...++.|.+|+.. ++.+..+.      ++...+..+++. ++++++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455789999999999988888889999999977 55544443      234578899994 67776666533 7899999


Q ss_pred             eCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEee
Q 021459           92 DARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        92 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      |.. + +.+..+. .+......++++|+++++++...++.|.+||.. ++....+.  .+...+..++++|+++++++..
T Consensus       106 d~~-g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          106 NQY-G-QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             CTT-S-CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CCC-C-cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            943 3 2333332 234567899999999988887778899999965 44444443  2334578999999999888888


Q ss_pred             CCCeEEEEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEEecCC-eEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDS-TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      .++.|.+||.. +..+..+.... ......++++++|+++++...++ .|.+||. +++.+..+..+.....+....+. 
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~-  259 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM-  259 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE-
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC-
Confidence            89999999974 44444443221 23466788999999888887776 9999995 56666666554333222333333 


Q ss_pred             cCCcEEEEeecCCeEEEEECCch
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      ++++++++ +.++.|++|+....
T Consensus       260 ~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          260 DDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcEEEE-CCCCeEEEEEcccc
Confidence            57877777 57999999998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=3.5e-18  Score=141.71  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=184.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ..|.++.|+|++..++..+.++.++.|   ..+....+..+...+.+++|++++++++++..++.|.+||..+.. ....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence            346778899988888777788889999   344555666677778999999999988888889999999987643 2222


Q ss_pred             eecccccEEEEEEecCCCEEEEeecC----CcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeC------C
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFD----ESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSH------D  170 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d  170 (312)
                      ...+...+.+++++|+++++++...+    +.|.+||..+++....+.  .+...+..++++|+|+++++...      .
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            22455678999999999888777665    689999998776543332  23456889999999988776653      3


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCC-CcEEEEE-----EccCCceeEEEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSA-GKFLKIY-----TGHTNKKYCITST  243 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~-~~~~~~~-----~~~~~~~~~~~~~  243 (312)
                      +.|..+|..+++... +.. .......++++|+++.|+++ +.++.|.+||... +..+..+     ....... .....
T Consensus       162 ~~l~~~~~~~~~~~~-~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~-~~~~i  238 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTP-IIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSC  238 (333)
T ss_dssp             EEEEEECTTSCCEEE-EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEE
T ss_pred             ceEEEEeCCCCEEEE-eec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCC-CCCce
Confidence            567777765544322 211 12235667899999866544 5678999999863 3322211     1111111 12223


Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeecccCCcc------ceEEEEEcCCCceEEEeeecC
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD------SVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      ...+++.++++...++.|.+||.. ++.+..+..+..      .+.+++|+|+++.|..++.++
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            344678888887788999999984 444444443322      688999999987776666553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.84  E-value=3.8e-18  Score=142.29  Aligned_cols=258  Identities=13%  Similarity=0.159  Sum_probs=167.8

Q ss_pred             cceEEEEECCCCCEEEEEe---------CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---C--eE
Q 021459           23 RAVSCVKFSNDGTLLASAS---------LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---R--TL   88 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~v   88 (312)
                      ..+..+++  ||+.++...         .++.|.+|+..+++.. .+    ..+..++|+|||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            35667778  888877642         2567899999887643 23    467889999999999887654   3  47


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC---------------------------CcEEEEEcCCCeE
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---------------------------ESIRIWEVKTGKC  141 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------------------g~i~~wd~~~~~~  141 (312)
                      .+|++.++. ... +..+.. +..++|+||++.|+.++.+                           ..|.+||+.+++.
T Consensus        88 ~~~~~~~g~-~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           88 WVADLETLS-SKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEETTTTE-EEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEECCCCc-eEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            777887643 222 222334 8899999999988877642                           4689999998876


Q ss_pred             EEEeeecCcCeEEEEEccCCCEEEEeeCCC-------eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC-
Q 021459          142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDG-------TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-  213 (312)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-  213 (312)
                      +..+.. . .+..+.|+|+| +++++..+.       ...+|.+.+++ ...+...  ....  .++|+|+.|+..+.+ 
T Consensus       165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~--~~spdg~~l~~~~~~~  236 (347)
T 2gop_A          165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFY--AVDSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEE--EEEECSSCEEEEECCS
T ss_pred             EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC--ccee--eECCCCCEEEEEEccc
Confidence            444444 3 78899999999 777775542       33444333443 3333322  2232  238999988877644 


Q ss_pred             -------CeEEEEEcCCCcEEEEEEccCCceeEEEE-EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEE
Q 021459          214 -------STLKLWNYSAGKFLKIYTGHTNKKYCITS-TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV  285 (312)
Q Consensus       214 -------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  285 (312)
                             ..|.+||  +++.......+..   .+.. ..+. ++ ++++++.+|.+++| +.+++. ..+..+...|.++
T Consensus       237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~---~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~  307 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKEVMGILDEVDR---GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGF  307 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSCEEESSTTCCS---EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEE
T ss_pred             cCCccccceEEEEC--CCceEeccccCCc---ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEee
Confidence                   3678887  5554333222222   2221 2334 66 88999999999999 874443 3444457789999


Q ss_pred             EEcCCCceEEEeeecCCeeEEEEee
Q 021459          286 TCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       286 ~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +|+|  ..+++++.++ ...+||.+
T Consensus       308 ~~s~--~~~~~~~~~~-~~~~l~~~  329 (347)
T 2gop_A          308 DVDE--IVVYLKETAT-RLRELFTW  329 (347)
T ss_dssp             EESS--SEEEEEECSS-SCCEEEEE
T ss_pred             eeeC--cEEEEEcCCC-ChHHheEe
Confidence            9999  5666666443 23367765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=2e-17  Score=137.01  Aligned_cols=243  Identities=12%  Similarity=0.139  Sum_probs=171.2

Q ss_pred             cCCEEEEEEccCCCeEEEEcCC------------------------CeEEEEeCCCCceeeeeee-cccccEEEEEEecC
Q 021459           64 SEGISDLAWSSDSHYICSASDD------------------------RTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQ  118 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~  118 (312)
                      -..+..++++|+|+++++...+                        +.|.+||..++. .+.... ++......++++|+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-ILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-EEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-EEeccCCCccCCceEEEECCC
Confidence            3568999999999988887776                        479999987653 333332 34456788999999


Q ss_pred             CCEEEEeecCCcEEEEEcCCCe-EEEEee---------ecCcCeEEEEEcc-CCCEEEEee-CCCeEEEEeCCCCceeeE
Q 021459          119 SNLIVSGSFDESIRIWEVKTGK-CTRVIR---------AHSMPVTSVHFNR-DGSLIVSGS-HDGTCKIWDAGEGACLKT  186 (312)
Q Consensus       119 ~~~l~s~~~dg~i~~wd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~  186 (312)
                      ++++++...++.|++||..... .+..+.         .+......++++| ++.++++.+ .++.|++|| .++..+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888888999999976442 333331         2233578999999 888888886 689999999 45655554


Q ss_pred             cccCC---------CCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc------CCc
Q 021459          187 LIDDK---------DPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT------NGK  250 (312)
Q Consensus       187 ~~~~~---------~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  250 (312)
                      +....         ......++++|+ +.++++...++.|++||..+++.+..+.............+. +      +++
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-pg~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI-PGFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE-TTEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec-CCEEEEeCCC
Confidence            42211         122566889998 777777778899999999888888777433221111222232 3      233


Q ss_pred             EEEEeecCCeEEEEECCchheeecc---cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          251 YIVSGSEDNCVYVWDLQQKTMIQKL---DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ..++...++.|.+||..+++.+..+   .++...+..|+++|++..+++..  ++.+|++|+.+
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~  321 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLT  321 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCC
Confidence            3333445668999999988887776   35667799999999997776665  45689999874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=5.8e-18  Score=141.93  Aligned_cols=264  Identities=14%  Similarity=0.164  Sum_probs=183.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeec------cCCEEEEEEccCCCeEE
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGH------SEGISDLAWSSDSHYIC   80 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~   80 (312)
                      ++..+..+  .++|+|||++++++.          .++.|.+||..+++.+..+...      ......++++|+|++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            44444445  899999999998876          3678999999998888777643      23456799999999999


Q ss_pred             EEcC--CCeEEEEeCCCCceeeee-eecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCC-CeEEEE------eeecC
Q 021459           81 SASD--DRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKT-GKCTRV------IRAHS  149 (312)
Q Consensus        81 ~~~~--d~~v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~-~~~~~~------~~~~~  149 (312)
                      ++..  ++.|.+||+.+. +.+.. +.. .+ ...+.+.|++ ..+++.+.||.+.+|++.. ++....      +....
T Consensus       124 v~n~~~~~~v~v~d~~~~-~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKG-DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEESSSEEEEEEETTTT-EEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EECCCCCCeEEEEECCCC-cEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            8864  578999999875 44444 332 11 2224566765 6778888999999999865 544311      11122


Q ss_pred             cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee--eEcc--c----CC---CCcEEEEEECCCCCEEEEEec------
Q 021459          150 MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL--KTLI--D----DK---DPAVSFAKFSPNGKFILVGTL------  212 (312)
Q Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~--~----~~---~~~~~~~~~~~~~~~l~~~~~------  212 (312)
                      .++ .+.+++++..++..+.++.+.++|+......  ..+.  .    ..   ......++++|+++.+.++..      
T Consensus       201 ~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~  279 (361)
T 2oiz_A          201 DPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEG  279 (361)
T ss_dssp             SCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred             Cce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence            222 2334577777777788899999998654321  1110  0    00   000112468999888777643      


Q ss_pred             -----CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch--heeecccCCccceEEE
Q 021459          213 -----DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK--TMIQKLDGHTDSVISV  285 (312)
Q Consensus       213 -----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l  285 (312)
                           .+.|.+||..+++.+..+..+.  ...+  .+ .+++++|++++. +.|.+||..++  +.+..+..+......+
T Consensus       280 ~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i--a~-spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~  353 (361)
T 2oiz_A          280 THKFPAAEIWVMDTKTKQRVARIPGRD--ALSM--TI-DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV  353 (361)
T ss_dssp             CTTCCCSEEEEEETTTTEEEEEEECTT--CCEE--EE-ETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred             cccCCCceEEEEECCCCcEEEEEecCC--eeEE--EE-CCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence                 3589999999999988887665  3333  33 367888888877 99999999999  8888877777788999


Q ss_pred             EEcCCCc
Q 021459          286 TCHPTEN  292 (312)
Q Consensus       286 ~~~p~~~  292 (312)
                      +++|+|.
T Consensus       354 ~~~p~G~  360 (361)
T 2oiz_A          354 QFHPVGG  360 (361)
T ss_dssp             EECCCSC
T ss_pred             EecCCCC
Confidence            9999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=2.2e-18  Score=157.90  Aligned_cols=266  Identities=14%  Similarity=0.124  Sum_probs=169.0

Q ss_pred             EEEEECCCCCEEEEEeCC---------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459           26 SCVKFSNDGTLLASASLD---------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP   96 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~   96 (312)
                      ..++|||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|+|||+.||.+ .++.|++|++.++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            448899999999998876         56679999988754 466677889999999999999988 4789999998765


Q ss_pred             ceeeeeeecccccE-----------------EEEEEecCCCEEEEeecCC------------------------------
Q 021459           97 FDCLKTLRGHSDFV-----------------FCVNFNPQSNLIVSGSFDE------------------------------  129 (312)
Q Consensus        97 ~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~s~~~dg------------------------------  129 (312)
                      .....+..++...+                 ..+.|+|||+.|+..+.|.                              
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            43222222333222                 3488999999998875321                              


Q ss_pred             ------cEEEEEcCC---C---eEEEEeee------cCcCeEEEEEccCCCEEEEeeC----CCeEEEEeCCCCc----e
Q 021459          130 ------SIRIWEVKT---G---KCTRVIRA------HSMPVTSVHFNRDGSLIVSGSH----DGTCKIWDAGEGA----C  183 (312)
Q Consensus       130 ------~i~~wd~~~---~---~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~----~  183 (312)
                            .|++||+.+   +   +.. .+..      +...+..++|+|||+.++....    +..|.+||+.+++    +
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~  301 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC  301 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence                  478899988   6   332 2322      5667889999999996665433    3379999998876    2


Q ss_pred             e--eEcc-cCCCCc-----EEEEEECCCCCEEE-EEec-C--CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459          184 L--KTLI-DDKDPA-----VSFAKFSPNGKFIL-VGTL-D--STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       184 ~--~~~~-~~~~~~-----~~~~~~~~~~~~l~-~~~~-d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
                      .  ..+. ..+...     .....|+|||+.++ ..+. +  ..|++||..+++...+..+ .-.   +.......++.+
T Consensus       302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~---v~~~~~~d~~~i  377 (740)
T 4a5s_A          302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWE---VIGIEALTSDYL  377 (740)
T ss_dssp             CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSC---EEEEEEECSSEE
T ss_pred             eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEE---EEEEEEEeCCEE
Confidence            1  1110 111111     12456999999877 5543 3  4688889877665443322 211   111122233344


Q ss_pred             EEEeec----CC--eEEEEECCchheeeccc----CCccceEEEEEcCCCceEEEee
Q 021459          252 IVSGSE----DN--CVYVWDLQQKTMIQKLD----GHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       252 l~~~~~----dg--~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +++++.    .+  .|...++........+.    +.........|+|++++++...
T Consensus       378 ~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          378 YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence            445544    23  44445555443322232    2345678999999998776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1.1e-18  Score=158.02  Aligned_cols=249  Identities=16%  Similarity=0.161  Sum_probs=162.0

Q ss_pred             eeecccccceE---------EEEEC--CCCCE-EEEEeC-CCeEEEEeCC--C-cceEEEeee-----ccCCEEEEEEcc
Q 021459           16 KTLTAHSRAVS---------CVKFS--NDGTL-LASASL-DKTVIIWSAS--S-LALVHRFVG-----HSEGISDLAWSS   74 (312)
Q Consensus        16 ~~~~~h~~~v~---------~~~~s--~~~~~-l~t~~~-d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~   74 (312)
                      +.+..|...+.         ...|+  |||+. |+.++. +..|.+++..  + ++ ...+..     |...+..++|+|
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC
Confidence            34556666655         56565  99998 776554 5667777765  2 33 334444     566788999999


Q ss_pred             CCCeEEEEcCC----------CeEEEEeCCCCc----eeeeeee-cccccEEEEEEecCCCEEEEeecCC--------cE
Q 021459           75 DSHYICSASDD----------RTLRIWDARTPF----DCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDE--------SI  131 (312)
Q Consensus        75 ~~~~l~~~~~d----------~~v~~wd~~~~~----~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg--------~i  131 (312)
                      ||+.|++++.+          ..|++||+.+..    .....+. .+...+..++|+|||+.|+.++.++        .|
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence            99999988876          589999987610    1233444 4556778899999999998877553        79


Q ss_pred             EEEEcC-CC---eEEEEeeecCcCeEEEEEccCCCEEEEeeCCC--eEEEEeCCCCceeeEcccCCCCc--------EEE
Q 021459          132 RIWEVK-TG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG--TCKIWDAGEGACLKTLIDDKDPA--------VSF  197 (312)
Q Consensus       132 ~~wd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~--------~~~  197 (312)
                      ++||+. ++   +.......+...+..+.|+|||++++++..++  .|.+||+.+++.. .+.......        +..
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCce
Confidence            999998 56   44444445567889999999999888888888  6667776555533 222221111        334


Q ss_pred             EEECCCCCEEEEEecCCeEEEE--EcCCCcEEEEEEccCCceeEEEEEEEccCCcEE-EEeecCC--eEEEEECCchhe
Q 021459          198 AKFSPNGKFILVGTLDSTLKLW--NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI-VSGSEDN--CVYVWDLQQKTM  271 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg--~i~iwd~~~~~~  271 (312)
                      +.++|++.++++++. +.+++|  |..+++ +..+..+.....   ..+....+.++ ++++.+.  .|.++|+.+++.
T Consensus       299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA---ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE---EEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE---EEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            678899999999888 999998  554454 455554433222   22122223333 3444444  455567655543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=5e-18  Score=142.31  Aligned_cols=266  Identities=15%  Similarity=0.127  Sum_probs=178.1

Q ss_pred             CCCEEEEEe------CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC----------CCeEEEEeCCCC
Q 021459           33 DGTLLASAS------LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD----------DRTLRIWDARTP   96 (312)
Q Consensus        33 ~~~~l~t~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~v~~wd~~~~   96 (312)
                      ++++++...      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++..          ++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555555543      3679999999999888877766554  8999999999998862          567999998764


Q ss_pred             ceeeeeeecc------cccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCC-CEEEE
Q 021459           97 FDCLKTLRGH------SDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDG-SLIVS  166 (312)
Q Consensus        97 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~  166 (312)
                       +.+..+...      ......++++||+++|+++..  +++|.+||+.+++.+.. +....  ...+.+.|++ ..+++
T Consensus        92 -~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A           92 -TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             -CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEE
T ss_pred             -cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEE
Confidence             334444321      223456889999999998875  57899999999987766 44322  2335567765 67788


Q ss_pred             eeCCCeEEEEeCCC-CceeeEc-----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EEEEEccC----
Q 021459          167 GSHDGTCKIWDAGE-GACLKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LKIYTGHT----  234 (312)
Q Consensus       167 ~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~----  234 (312)
                      .+.||.+.+|+... ++.....     .......+ .+..++++..++..+.++.|.++|+.....  +..+....    
T Consensus       169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             ECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            88999999998754 4333111     11111111 122356677777778899999999865542  22221100    


Q ss_pred             --Cc-eeE-EEEEEEccCCcEEEEeec-----------CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459          235 --NK-KYC-ITSTFSVTNGKYIVSGSE-----------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       235 --~~-~~~-~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                        .. ... ....+. ++++.+.++..           ++.|.+||+.+.+.+..+..+.  +.+++|+|++++|++++ 
T Consensus       248 ~~~~~p~g~~~~a~~-~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n-  323 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLH-RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD-  323 (361)
T ss_dssp             HTTCEECCSSCEEEE-TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC-
T ss_pred             ccccccCCeeEEEEe-cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC-
Confidence              00 000 001233 55555554432           3589999999999999888776  89999999999888776 


Q ss_pred             cCCeeEEEEee
Q 021459          300 DGDRTVRVWVQ  310 (312)
Q Consensus       300 dgd~~v~iw~~  310 (312)
                       + ++|.+|+.
T Consensus       324 -~-~~v~v~D~  332 (361)
T 2oiz_A          324 -G-GNVNVYDI  332 (361)
T ss_dssp             -S-SCEEEEEC
T ss_pred             -C-CeEEEEEC
Confidence             3 79999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=7.4e-17  Score=130.82  Aligned_cols=239  Identities=15%  Similarity=0.219  Sum_probs=166.3

Q ss_pred             ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee------cccccEEEEEEe-cCCCEEEEeec-CCcEEEE
Q 021459           63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR------GHSDFVFCVNFN-PQSNLIVSGSF-DESIRIW  134 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~s~~~-dg~i~~w  134 (312)
                      +...+.+++++++++++++...++.|.+||....  .+..+.      ++......+++. ++++++++... ++.|.+|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            4456889999999998888888999999997642  233332      233567889994 66666666543 7899999


Q ss_pred             EcCCCeEEEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc-CCCCcEEEEEECCCCCEEEEEec
Q 021459          135 EVKTGKCTRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID-DKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       135 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      | .+++....+.. +...+..++++|+++++++...++.|.+||.. ++....+.. ........++++++|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 55666555532 33467899999999988888888999999964 444444321 22334677889999998887778


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC-eEEEEECCchheeecccCCc--cceEEEEEcC
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN-CVYVWDLQQKTMIQKLDGHT--DSVISVTCHP  289 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~p  289 (312)
                      ++.|++||. +++.+..+............ ...+++.++++...++ .|.+||.. ++.+..+..+.  ..+.+++++|
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i-~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~  260 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGV-GINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD  260 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEE-EECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEE-EECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECC
Confidence            899999997 45555555433211112222 3346788888888776 99999964 44555554433  3478999999


Q ss_pred             CCceEEEeeecCCeeEEEEeec
Q 021459          290 TENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       290 ~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +++.+++ +  .+++|++|++.
T Consensus       261 ~g~l~vs-~--~~~~v~v~~~~  279 (286)
T 1q7f_A          261 DGSVVLA-S--KDYRLYIYRYV  279 (286)
T ss_dssp             TTEEEEE-E--TTTEEEEEECS
T ss_pred             CCcEEEE-C--CCCeEEEEEcc
Confidence            9976665 4  35799999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.82  E-value=3.7e-15  Score=121.22  Aligned_cols=271  Identities=8%  Similarity=0.011  Sum_probs=185.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE-eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR-FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ..+...+.+++++++|++.++...++.|.+|+.. ++.... ...+...+..+++++++.++++...++.|..||.... 
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-
Confidence            3456789999999999988877668899999988 443221 1224567899999999998888777889999997632 


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW  176 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (312)
                      ............+..++++++++++++...++.|..||. +++.... .......+..++++++++++++...++.|..|
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence            111112223456788999999988887777889999998 5544332 22234568899999999888877778899999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS  256 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (312)
                      |. +++...............+.+++++.++++...++.|.+||. +++... +........ .......+++.+.++..
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~-~~~i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNAR-PHAITAGAGIDLWFTEW  243 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCC-EEEEEECSTTCEEEEET
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCC-ceeEEECCCCCEEEecc
Confidence            98 655443212222344667789999987777666889999998 666433 322211111 22223346677777766


Q ss_pred             cCCeEEEEECCchhee-ecccCCccceEEEEEcCCCceEEEee
Q 021459          257 EDNCVYVWDLQQKTMI-QKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       257 ~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .++.|..||.. ++.. ..+..+...+.++++ +++..+++.+
T Consensus       244 ~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          244 GANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             TTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             CCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence            78999999984 3322 123445567899999 8887766654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=3.5e-18  Score=144.66  Aligned_cols=258  Identities=14%  Similarity=0.078  Sum_probs=167.6

Q ss_pred             EeCCCcceEEEeeeccCCEEE-----EEEccCCCeEEEEcC-CC--eEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           49 WSASSLALVHRFVGHSEGISD-----LAWSSDSHYICSASD-DR--TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        49 w~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      .+..++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.++ +......++...+..+.|+||++
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSS
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCC
Confidence            366667777777777666655     889999999988877 66  4888898775 33344445555555678999999


Q ss_pred             EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEE--EEccCCCEEEEe----------------------eCCCeEEEE
Q 021459          121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSV--HFNRDGSLIVSG----------------------SHDGTCKIW  176 (312)
Q Consensus       121 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~iw  176 (312)
                      .|+.++.++.|++||+.+++.......+...+...  .++|++++++..                      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            99999999999999999998776666555444333  348999988742                      244679999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecC------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLD------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      |+.+++... +.. ....+....|+| +|+.|+....+      ..|.++|...++... +..+..... +....+.+++
T Consensus       174 d~~~g~~~~-l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~-~~~~~~spdg  249 (388)
T 3pe7_A          174 DLKTGESTV-ILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGES-CTHEFWVPDG  249 (388)
T ss_dssp             ETTTCCEEE-EEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEE-EEEEEECTTS
T ss_pred             ECCCCceEE-eec-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcc-cccceECCCC
Confidence            998876433 222 234467788999 99988877653      378888876654433 222222112 2223345778


Q ss_pred             cEEEEeec-C----CeEEEEECCchhe--eecccCCccc---eEEEEEcCCCceEEEeee-------cCCeeEEEEeec
Q 021459          250 KYIVSGSE-D----NCVYVWDLQQKTM--IQKLDGHTDS---VISVTCHPTENKIASAGL-------DGDRTVRVWVQD  311 (312)
Q Consensus       250 ~~l~~~~~-d----g~i~iwd~~~~~~--~~~~~~h~~~---v~~l~~~p~~~~l~~~~~-------dgd~~v~iw~~~  311 (312)
                      +.|+..+. +    +.|.+||+.+++.  +..+.++...   ...++|+|+++.|+....       +++..|++|+.+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence            86655332 2    2499999987653  3333331111   112379999998886542       456789998864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=8.2e-17  Score=146.86  Aligned_cols=274  Identities=10%  Similarity=0.063  Sum_probs=177.0

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcceEEEee------eccCCEEEEEEccCCCeEEEEcCCC-----eEEEEeCCC
Q 021459           32 NDGTLLASASLD-----KTVIIWSASSLALVHRFV------GHSEGISDLAWSSDSHYICSASDDR-----TLRIWDART   95 (312)
Q Consensus        32 ~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~~wd~~~   95 (312)
                      |+|++++....+     +.+.+.+...++....+.      +|...+..++|+|||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            889887755432     234444544443321111      2334578999999999998775543     899999988


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCc----------------EEEEEcCCCeEE--EEeee--cCcCeEEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES----------------IRIWEVKTGKCT--RVIRA--HSMPVTSV  155 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----------------i~~wd~~~~~~~--~~~~~--~~~~v~~~  155 (312)
                      +.........  ..+..++|+||++.|+.++.++.                |++|++.+++..  ..+..  +...+..+
T Consensus       161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence            6432222221  22567899999999998887765                999999877532  22222  34457789


Q ss_pred             EEccCCCEEEEeeC-----CCeEEEEeCCC------Cc-eeeEcccCCCCcEEEEEECCCCCEEEEEecC----CeEEEE
Q 021459          156 HFNRDGSLIVSGSH-----DGTCKIWDAGE------GA-CLKTLIDDKDPAVSFAKFSPNGKFILVGTLD----STLKLW  219 (312)
Q Consensus       156 ~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~v~  219 (312)
                      .|+|||++++..+.     +..+.+||+.+      +. ....+........ . .++|+|+.|+..+..    +.|.+|
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-D-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-E-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-E-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            99999999887664     56899999875      42 2344433333332 2 478889888776543    369999


Q ss_pred             EcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe--EEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          220 NYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC--VYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       220 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      |+.++.  ....+..+..........+. +++.++++...+|.  |.+||+.+++....+..+...+..++++|++..++
T Consensus       317 d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          317 DFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             ETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             eCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            997764  12333334332111122333 56778888888885  55667766666677777777889999999987666


Q ss_pred             Ee--eecCCeeEEEEee
Q 021459          296 SA--GLDGDRTVRVWVQ  310 (312)
Q Consensus       296 ~~--~~dgd~~v~iw~~  310 (312)
                      ..  |.....+|.+|++
T Consensus       396 ~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EEEECSSCCCEEEEEET
T ss_pred             EEEeCCCCCCEEEEEEC
Confidence            44  3334467888775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=1.2e-16  Score=145.79  Aligned_cols=245  Identities=12%  Similarity=0.120  Sum_probs=165.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCC-----eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe--------
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDK-----TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRT--------   87 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   87 (312)
                      |...+..++|||||++||.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            445788999999999998765433     8999999998876533322 23667999999999998887765        


Q ss_pred             --------EEEEeCCCCce---eeeeeecccccEEEEEEecCCCEEEEeec-----CCcEEEEEcCC------Ce-EEEE
Q 021459           88 --------LRIWDARTPFD---CLKTLRGHSDFVFCVNFNPQSNLIVSGSF-----DESIRIWEVKT------GK-CTRV  144 (312)
Q Consensus        88 --------v~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~------~~-~~~~  144 (312)
                              |++|++.++..   .+.....+...+..+.|+||+++|+..+.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999987542   22222334556788999999999887764     56799999986      43 3445


Q ss_pred             eeecCcCeEEEEEccCCCEEEEeeCC----CeEEEEeCCCCce--eeEcccCCC-CcEEEEEECCCCCEEEEEecCCe--
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGSHD----GTCKIWDAGEGAC--LKTLIDDKD-PAVSFAKFSPNGKFILVGTLDST--  215 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~--  215 (312)
                      +..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..+.. ..+..+.+++++.++++...++.  
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            5555555544 478888877766543    3699999877631  233433333 35666778877778888888874  


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE-Ee---ecCCeEEEEECCchh
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV-SG---SEDNCVYVWDLQQKT  270 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~dg~i~iwd~~~~~  270 (312)
                      |++||+.+++.+..+..+...   +......+++..++ +.   ...+.|..||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~~~~~---v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPLEVGS---VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECCCSSE---EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCCCCce---EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            566777677766666554322   22222234565544 32   245889999997765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=6.3e-16  Score=136.19  Aligned_cols=274  Identities=11%  Similarity=0.122  Sum_probs=190.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC--CCceeeeeeeccccc
Q 021459           32 NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR--TPFDCLKTLRGHSDF  109 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~--~~~~~~~~~~~~~~~  109 (312)
                      |.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+.  +. +.+..+.... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G~-~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGS-E  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECCS-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecCC-C
Confidence            4455677778889999999999998887764 3467799999999999999999999999995  43 4455554332 3


Q ss_pred             EEEEEEe----cCCCEEEEeec-CCcEEEEEcCCCeEEEEeeec----------Cc-CeEEEEEccCCCE-EEEeeCCCe
Q 021459          110 VFCVNFN----PQSNLIVSGSF-DESIRIWEVKTGKCTRVIRAH----------SM-PVTSVHFNRDGSL-IVSGSHDGT  172 (312)
Q Consensus       110 v~~~~~~----~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~-l~~~~~d~~  172 (312)
                      -..++|+    ||++++++++. +++|.++|..+.+.+..+...          .. .+..+..++++.. ++....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            4678999    69998877765 489999999998887765432          12 4677888887654 445556799


Q ss_pred             EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEEc-cCCce--eEEEEEEEccC
Q 021459          173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYTG-HTNKK--YCITSTFSVTN  248 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~  248 (312)
                      |.++|......+....-..........|+|++++++++. .++.|.++|..+++.+..+.. .....  ...  .+..++
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--~~~~p~  399 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--NFVHPT  399 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--EEEETT
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce--eeECCC
Confidence            999998765322211112233455677999999887765 578999999999987776654 21110  011  123354


Q ss_pred             -CcEEEEee-cCCeEEEEECCc-------hheeecccCCccceEEEEEcCCCceEEEeee-cC----CeeEEEEee
Q 021459          249 -GKYIVSGS-EDNCVYVWDLQQ-------KTMIQKLDGHTDSVISVTCHPTENKIASAGL-DG----DRTVRVWVQ  310 (312)
Q Consensus       249 -~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~-dg----d~~v~iw~~  310 (312)
                       +...++.. .++.|.++|...       .+.++.+......-..++.||+++++.+... ..    ..+|.+++.
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence             45555553 568999999976       5566776654444456789999988776542 11    237777775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=5.4e-16  Score=126.39  Aligned_cols=242  Identities=11%  Similarity=0.060  Sum_probs=166.8

Q ss_pred             eeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +..+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+..++++++|+++++...++.|.+||.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            345556677788999999998 7788888899999999877  4556667778999999999998888777789999998


Q ss_pred             CCCceeeeeeecc----cccEEEEEEecCCCEEEE----eec-------------CCcEEEEEcCCCeEEEEeeecCcCe
Q 021459           94 RTPFDCLKTLRGH----SDFVFCVNFNPQSNLIVS----GSF-------------DESIRIWEVKTGKCTRVIRAHSMPV  152 (312)
Q Consensus        94 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~v  152 (312)
                      .++.. .......    ...+..++++|+++++++    +..             .+.|..++.. ++. ..+..+....
T Consensus        98 ~~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEW-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKP  174 (296)
T ss_dssp             TTCCE-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSE
T ss_pred             CCCcE-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCC
Confidence            65432 1111111    123567899999998887    331             2456666655 443 3344445567


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEeCC-CCce---eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          153 TSVHFNRDGSLIVSGSHDGTCKIWDAG-EGAC---LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      ..++|+|+++.+++.+.++.|.+||+. ++..   ...+ .........++++++|+++++.  ++.|.+||.. ++.+.
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence            899999999988777788999999986 4443   2222 2222233456799999866655  8899999986 77777


Q ss_pred             EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .+..+.. ...+  .+..++++.|..++.+| +.-++..+.
T Consensus       251 ~~~~~~~-~~~~--~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          251 RVLTPQT-TSNL--CFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EEECSSC-CCEE--EEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             EEECCCC-ceeE--EEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            6665544 3333  34356777887777764 445555543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.7e-15  Score=123.37  Aligned_cols=230  Identities=14%  Similarity=0.082  Sum_probs=160.5

Q ss_pred             EEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459           58 HRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV  136 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~  136 (312)
                      ..+..+.....+++|+|+++ +++++..++.|..||..+.   ...+..+...+.+++++|+++++++...++.|.+||.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            34444556678999999998 7788888999999998864   3445556677899999999998877777789999999


Q ss_pred             CCCeEEEEeeec----CcCeEEEEEccCCCEEEE----ee-------------CCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459          137 KTGKCTRVIRAH----SMPVTSVHFNRDGSLIVS----GS-------------HDGTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       137 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      .+++........    ...+..++++|+|+++++    |+             ..+.|..++.. ++. ..+. ......
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCCCC
Confidence            888754433221    124567999999998887    33             13466666655 332 2222 223445


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEEcC-CCcE---EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459          196 SFAKFSPNGKFILVGTLDSTLKLWNYS-AGKF---LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  271 (312)
                      ..++++|+++.+++.+.++.|++||+. +++.   ...+..+......+   ...++|++.++.  ++.|.+||.. ++.
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i---~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL---RVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE---EEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE---EECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            678899999998777778999999986 4544   23331111111222   233677766665  7889999986 566


Q ss_pred             eecccCCccceEEEEE-cCCCceEEEeeec
Q 021459          272 IQKLDGHTDSVISVTC-HPTENKIASAGLD  300 (312)
Q Consensus       272 ~~~~~~h~~~v~~l~~-~p~~~~l~~~~~d  300 (312)
                      +..+..+.. +.+++| .|+++.|.+++.+
T Consensus       249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             EEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             EEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence            667766666 899999 5888888888754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=9.6e-17  Score=146.07  Aligned_cols=271  Identities=12%  Similarity=0.032  Sum_probs=170.1

Q ss_pred             CCCCCEEEEEeCCC-----eEEEEeCCCcceEEEee------eccCCEEEEEEccCCCeEE-----EEcCCCeEEEEeCC
Q 021459           31 SNDGTLLASASLDK-----TVIIWSASSLALVHRFV------GHSEGISDLAWSSDSHYIC-----SASDDRTLRIWDAR   94 (312)
Q Consensus        31 s~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~-----~~~~d~~v~~wd~~   94 (312)
                      +|+|++++....++     .+.+.+...++....+.      +|...+..++|+|||++|+     .|+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47898887765543     34444544443322221      3444688999999999998     34445789999998


Q ss_pred             CCcee-eeeeecccccEEEEEEecCCCEEEEeecCCc-------------EEEEEcCCCeE--EEEe--eecCcCeEEEE
Q 021459           95 TPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFDES-------------IRIWEVKTGKC--TRVI--RAHSMPVTSVH  156 (312)
Q Consensus        95 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------------i~~wd~~~~~~--~~~~--~~~~~~v~~~~  156 (312)
                      ++... ...+...  ....++|+||++.|+.++.+..             |++|++.+++.  ...+  ..+...+..+.
T Consensus       156 tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          156 SGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            76432 1112111  1157899999999999888766             99999987752  2222  23445688999


Q ss_pred             EccCCCEEEEeeCCC----eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec----CCeEEEEEcCCCcE--
Q 021459          157 FNRDGSLIVSGSHDG----TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL----DSTLKLWNYSAGKF--  226 (312)
Q Consensus       157 ~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~--  226 (312)
                      |+|||++++..+.++    .+.++|..++. ...+.......... .+ ++|. ++..+.    ++.|.+||+.++..  
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~-~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEV-HA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEE-EE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEE-Ee-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            999999988877665    67777765543 33333333333333 34 5666 544443    57899999877652  


Q ss_pred             -EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC-chheeecccCC-ccceEEEEEcCCCceEEEeee--cC
Q 021459          227 -LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ-QKTMIQKLDGH-TDSVISVTCHPTENKIASAGL--DG  301 (312)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~p~~~~l~~~~~--dg  301 (312)
                       ...+..+... ......+.  ++.++++...||..++|.+. .+.....+..+ ...+..++++|++..++....  ..
T Consensus       310 ~~~l~~~~~~~-~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~  386 (695)
T 2bkl_A          310 WKEIVPEDSSA-SLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT  386 (695)
T ss_dssp             CEEEECCCSSC-EEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred             CeEEecCCCCC-eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence             3333322121 11122232  67788999999998888654 34444555544 567788889999877664432  22


Q ss_pred             CeeEEEEee
Q 021459          302 DRTVRVWVQ  310 (312)
Q Consensus       302 d~~v~iw~~  310 (312)
                      ..+|++|++
T Consensus       387 P~~v~~~d~  395 (695)
T 2bkl_A          387 PRQIYKTSV  395 (695)
T ss_dssp             EEEEEEEET
T ss_pred             CCEEEEEEC
Confidence            357888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=1e-15  Score=127.47  Aligned_cols=234  Identities=15%  Similarity=0.158  Sum_probs=150.5

Q ss_pred             cceEEEEECCCCCEEEEEeCC---C--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC------------
Q 021459           23 RAVSCVKFSNDGTLLASASLD---K--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD------------   85 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d---~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------   85 (312)
                      ..+..++|||||+.|+.++.+   +  .|.+|+..+++...... +.. +..++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457889999999999887653   3  47777888776544333 334 9999999999988887632            


Q ss_pred             ---------------CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC-------cEEEEEcCCCeEEE
Q 021459           86 ---------------RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-------SIRIWEVKTGKCTR  143 (312)
Q Consensus        86 ---------------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~  143 (312)
                                     ..|.+||+.++. .+..+.. . .+..+.|+|++ +++++..++       ...+|.+.+++.. 
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-
T ss_pred             cceeecCcccccCccceEEEEECCCCe-EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-
Confidence                           568899987753 2233333 3 67789999999 777776542       3445544455543 


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEeeCC--------CeEEEEeCCCCceeeEcccCCCCcEEE-EEECCCCCEEEEEecCC
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGSHD--------GTCKIWDAGEGACLKTLIDDKDPAVSF-AKFSPNGKFILVGTLDS  214 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~  214 (312)
                      .+..+ ..+..+  +|+|+.++.++.+        ..|.+||  +++ ...+.......+.. +.|+ ++ ++++++.++
T Consensus       212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            33334 445444  8999988877644        3688888  443 33444444455664 7899 88 888899999


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE-EEEECCchheeecccCCcc
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV-YVWDLQQKTMIQKLDGHTD  280 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~h~~  280 (312)
                      .+++| +.+++..... .+...   +......+  .++++++.++.. .+|.+. ++ ...+..|..
T Consensus       284 ~~~l~-~~~g~~~~~~-~~~~~---v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIA-KGRHW---IMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             EEEEE-EESSSEEEEE-CSSSE---EEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             cEEEE-EcCCceEEEe-cCCCe---EEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            99999 8766554433 33322   22222223  677777777654 677665 32 344555544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.77  E-value=7.8e-16  Score=123.60  Aligned_cols=242  Identities=9%  Similarity=-0.013  Sum_probs=163.3

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           24 AVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      ...+++++|+|++.+ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||......  ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence            678899999999777 546788999998765543222222335678899999998666655 88999999865422  22


Q ss_pred             ee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459          103 LR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       103 ~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (312)
                      .. ........++++++++.+++...++.|.+|+..+.............+..++++++++++++...++.|.+||....
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            21 22246788999999998777777889999986655433222222235678999999998877777889999998765


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  261 (312)
                      ........ .......++++++|.++++...++.|.+||............+......   ....++++++++...++.|
T Consensus       182 ~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~---i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          182 NQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA---VAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CEEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE---EEECTTCCEEEEEGGGTEE
T ss_pred             ceEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee---EEECCCCCEEEEECCCCEE
Confidence            54332222 2244667889999977777777889999998655432211111122222   2334678888999999999


Q ss_pred             EEEECCchhee
Q 021459          262 YVWDLQQKTMI  272 (312)
Q Consensus       262 ~iwd~~~~~~~  272 (312)
                      .++++...+..
T Consensus       258 ~~~~~~~~~~~  268 (270)
T 1rwi_B          258 VKLTSLEHHHH  268 (270)
T ss_dssp             EEECCCGGGSC
T ss_pred             EEEcCCCcccc
Confidence            99998766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=1.5e-15  Score=122.35  Aligned_cols=216  Identities=12%  Similarity=0.104  Sum_probs=161.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeecc-CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc-cccE
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHS-EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH-SDFV  110 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~-~~~v  110 (312)
                      .+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++++  +.++.|..||. ++ +.+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG-RELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-CEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-CEEEEEcCCCCccc
Confidence            46889999999999999999999998888765 4788999999999888  35778999998 54 445555543 3467


Q ss_pred             EEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEEeee------cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          111 FCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRVIRA------HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      .++.+.++++.+++.+. ++.|..+|. +++.+..+..      +......+...++|+++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            88899999999998877 777877775 5666655532      11234556788999999999999999999987 887


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC---ceeEEEEEEEccCCcEEEEee
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN---KKYCITSTFSVTNGKYIVSGS  256 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~  256 (312)
                      +.++.... . ...+...++|+.++++..++.|..+|..+++.+..+.....   ...........+++.++++..
T Consensus       158 ~w~~~~~~-~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          158 LNSVKLSG-T-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEECSS-C-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEECCC-C-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            77664432 2 23355789999999888888999999998999888764321   112233344456777777653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=1.2e-14  Score=120.25  Aligned_cols=238  Identities=8%  Similarity=0.083  Sum_probs=160.2

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC----CeEEE
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD----RTLRI   90 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~   90 (312)
                      +..+..+...+.+++|+|++++++++..++.|.+|+..+++.......+...+.+++++++++++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            34455667778999999999988888889999999998877654443566789999999999988877666    68999


Q ss_pred             EeCCCCceeeeeee--cccccEEEEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC
Q 021459           91 WDARTPFDCLKTLR--GHSDFVFCVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        91 wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
                      ||..+.... ..+.  .+...+..+.++|+++++++...      .+.|..+|..+++..... .....+..++|+|+++
T Consensus       117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSS
T ss_pred             EeCCCCEEE-EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCC
Confidence            998764321 1111  23456889999999988776653      345666676655543322 2333578899999998


Q ss_pred             EE-EEeeCCCeEEEEeCCC-CceeeE----cc-c-CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccC
Q 021459          163 LI-VSGSHDGTCKIWDAGE-GACLKT----LI-D-DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT  234 (312)
Q Consensus       163 ~l-~~~~~d~~i~iwd~~~-~~~~~~----~~-~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  234 (312)
                      .+ ++.+.++.|.+||..+ +.....    .. . ........++++++|+++++...++.|.+||. +++.+..+..+.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~  273 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  273 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence            55 4555678999999863 332211    11 0 11134566889999998887777899999998 566666665432


Q ss_pred             C------ceeEEEEEEEccCCcEEEEeecC
Q 021459          235 N------KKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       235 ~------~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      .      ....+  .+. ++++.|+.++.+
T Consensus       274 ~~~g~~~~~~~~--~~~-~dg~~L~v~~~~  300 (333)
T 2dg1_A          274 RDEGHMLRSTHP--QFI-PGTNQLIICSND  300 (333)
T ss_dssp             GGGTCSCBCCEE--EEC-TTSCEEEEEEEC
T ss_pred             CccccccCcceE--EEC-CCCCEEEEEeCc
Confidence            1      12222  333 566566554444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=1.9e-17  Score=140.32  Aligned_cols=255  Identities=11%  Similarity=0.024  Sum_probs=159.8

Q ss_pred             EeCCCcceEEEeeeccCC-----EEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           49 WSASSLALVHRFVGHSEG-----ISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        49 w~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      .|..+++.+..+..+...     +..++|+|+|++|+.....   ..|.+||+.++. ......++......+.|+||++
T Consensus        15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-EEECCCSSCBCTTTCEECTTSS
T ss_pred             ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-EEEeecCCCCccccceECCCCC
Confidence            356666655555444332     6778999999998776543   468888987653 2222222222223377999999


Q ss_pred             EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEE-------------------EEEccCCCEEEEe-----eCCCeEEEE
Q 021459          121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS-------------------VHFNRDGSLIVSG-----SHDGTCKIW  176 (312)
Q Consensus       121 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~iw  176 (312)
                      .|+..+.++.|++||+.+++.......+......                   ..|+|+++.++..     ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999988765555433332222                   2456777766544     356689999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecC------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLD------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      |+.+++.....  .....+....|+| +++.|+..+.+      ..|.+||+..++...... +.. ...+....+.+++
T Consensus       174 d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~~~spdg  249 (396)
T 3c5m_A          174 DIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHEFWIPDG  249 (396)
T ss_dssp             ETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEEEECTTS
T ss_pred             ECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCC-CccccceEECCCC
Confidence            99887654332  2234567778999 78877766543      368888886655333222 211 1223333445788


Q ss_pred             cEEEEeecC-----CeEEEEECCchheeecccCCccceEEEEEcC-CCceEEEeee--------------cCCeeEEEEe
Q 021459          250 KYIVSGSED-----NCVYVWDLQQKTMIQKLDGHTDSVISVTCHP-TENKIASAGL--------------DGDRTVRVWV  309 (312)
Q Consensus       250 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~--------------dgd~~v~iw~  309 (312)
                      +.|+.++.+     +.|.+||+.+++...... .. ... +.|+| +++.+++++.              +++..|++|+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d  326 (396)
T 3c5m_A          250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN  326 (396)
T ss_dssp             SCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred             CEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence            877666543     559999998765432211 11 122 88999 9998887552              2457888887


Q ss_pred             ec
Q 021459          310 QD  311 (312)
Q Consensus       310 ~~  311 (312)
                      .+
T Consensus       327 ~~  328 (396)
T 3c5m_A          327 TK  328 (396)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.76  E-value=6.6e-14  Score=113.85  Aligned_cols=279  Identities=8%  Similarity=-0.020  Sum_probs=186.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      .......++.++++|++.++...++.|.+|+.. ++... .+......+..+++.+++++.++...++.|..+|.. +..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678999999999988887778999999987 54432 122233678899999999888877768889999977 322


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      ...........+..+++.++++++++...++.|..+|.. ++.... +......+..+++.++++++++...++.|..+|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            222222233567889999999888877767889999987 554322 222345678999999999777776678999999


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      . +++...............+.++++|.+.++....+.|.+||. +++.... .......... .....+++.+.++...
T Consensus       174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~-~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPH-AITAGKNSEIWFTEWG  249 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEE-EEEECSTTCEEEEETT
T ss_pred             C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCce-EEEECCCCCEEEeccC
Confidence            8 554433222222344667789999987777666778999998 5554332 2111111122 2233456777777767


Q ss_pred             CCeEEEEECCchhee-ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          258 DNCVYVWDLQQKTMI-QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       258 dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++.|..||.. ++.. ..+......+.++++.+++..+++..  +  .|..+++
T Consensus       250 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--~--~i~~~~p  298 (300)
T 2qc5_A          250 ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK--C--KIGKLNL  298 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS--S--EEEEEEE
T ss_pred             CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc--C--ceEEeCC
Confidence            8999999984 3322 22333445688999999987665433  2  4555554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.76  E-value=1.4e-16  Score=145.01  Aligned_cols=244  Identities=12%  Similarity=0.062  Sum_probs=158.2

Q ss_pred             ccccceEEEEECCCCCEEE-----EEeCCCeEEEEeCCCcceEEEeeeccCCE--EEEEEccCCCeEEEEcCCCe-----
Q 021459           20 AHSRAVSCVKFSNDGTLLA-----SASLDKTVIIWSASSLALVHRFVGHSEGI--SDLAWSSDSHYICSASDDRT-----   87 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~-----   87 (312)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4566789999999999998     34445789999999887641  1122222  67999999999999888765     


Q ss_pred             --------EEEEeCCCCce---eeeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeEEEEeeecCcCe
Q 021459           88 --------LRIWDARTPFD---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKCTRVIRAHSMPV  152 (312)
Q Consensus        88 --------v~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~v  152 (312)
                              |++|++.++..   .+.....+...+..+.|+||+++++..+.++    .|.++|..+++. ..+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce
Confidence                    99999987542   3333334556788999999999888777665    677777655543 3444455455


Q ss_pred             EEEEEccCCCEEEEee---CCCeEEEEeCCCCce--eeEcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcC-CCc
Q 021459          153 TSVHFNRDGSLIVSGS---HDGTCKIWDAGEGAC--LKTLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYS-AGK  225 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~  225 (312)
                      ....+ ++|.+++...   .++.|.+||+.++..  ...+.... ...+..+.++ ++.++++...|+..++|.+. +++
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            55556 5666444433   257899999876542  23333332 3445666676 66778888889988887654 354


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCcEEE----EeecCCeEEEEECCchh
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGKYIV----SGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~~  270 (312)
                      ....+..+...  .+......++++.++    +....+.|++||+.+++
T Consensus       353 ~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          353 PVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             eeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            44444332111  121112224565555    33345789999997654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=2.8e-15  Score=120.71  Aligned_cols=214  Identities=12%  Similarity=0.114  Sum_probs=160.2

Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc-ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCe
Q 021459           75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPV  152 (312)
Q Consensus        75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v  152 (312)
                      .+++|++++.++.|.+||.+++. .+..+..+. ..+.++.+.|++++++  +.++.|..||. +++.+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE-IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE-EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe-EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            46789999999999999997764 455555444 3577889999999888  34678999998 78888877764 3468


Q ss_pred             EEEEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEcccCCC-----CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          153 TSVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTLIDDKD-----PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      .++.+.++|+++++.+. ++.+..+|. +++.+.++.....     .....+...++|+++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            88999999999999887 778888886 5665554431111     112234578999999999999999999987 888


Q ss_pred             EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc------cceEEEEEcCCCceEEEee
Q 021459          227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT------DSVISVTCHPTENKIASAG  298 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~p~~~~l~~~~  298 (312)
                      +..+..... .+..   ...+++.+++++..+++|..+|..+++.+-++..+.      ..+..++..++++.+++..
T Consensus       158 ~w~~~~~~~-~~~~---~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          158 LNSVKLSGT-PFSS---AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEECSSC-CCEE---EECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCC-ccce---eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            887765432 2222   234678999999999999999999888876664322      2378888899998888763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=8.4e-14  Score=122.73  Aligned_cols=281  Identities=13%  Similarity=0.084  Sum_probs=189.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCC--CcceEEEeeeccCCEEEEEEc----cCCCeEEEEcC-CCeEEEEeCCC
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSAS--SLALVHRFVGHSEGISDLAWS----SDSHYICSASD-DRTLRIWDART   95 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~v~~wd~~~   95 (312)
                      ..+..+.|+|||+++++++.|+.|.+||+.  +.+.+.++... .....++|+    |||+++++++. ++.+.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999996  77777777643 346789999    69998887765 58999999877


Q ss_pred             Cceeeeeeec----------ccc-cEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCC
Q 021459           96 PFDCLKTLRG----------HSD-FVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGS  162 (312)
Q Consensus        96 ~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~  162 (312)
                      . +.++.+.-          |.. .+..+..++++.. +++....|.|.++|....+...... ........+.|+|+++
T Consensus       276 ~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 L-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             C-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             C-cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            4 44444321          222 5667777887654 4455566899999987654333221 2233466889999999


Q ss_pred             EEEEee-CCCeEEEEeCCCCceeeEccc-CCCC----cEEEEEECCCCCEE-EEEe-cCCeEEEEEcCC-------CcEE
Q 021459          163 LIVSGS-HDGTCKIWDAGEGACLKTLID-DKDP----AVSFAKFSPNGKFI-LVGT-LDSTLKLWNYSA-------GKFL  227 (312)
Q Consensus       163 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l-~~~~-~d~~i~v~d~~~-------~~~~  227 (312)
                      +++++. .++.|.++|+.+++....+.. ...+    ...  .++|++..+ +++. .++.|.++|...       .+.+
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence            887655 578999999999887665533 2211    222  257875544 4443 468999999877       4566


Q ss_pred             EEEEccCCceeEEEEEEEccCCcEEEEeec-------CCeEEEEECCch-----hee-ecc--------cCCccceEEEE
Q 021459          228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSE-------DNCVYVWDLQQK-----TMI-QKL--------DGHTDSVISVT  286 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~-~~~--------~~h~~~v~~l~  286 (312)
                      +.+.........+   ...++++++.+...       .+.|.++|+.+.     ... ..+        ......+..+.
T Consensus       433 ~~i~~~g~g~~~i---~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (567)
T 1qks_A          433 DSFPALGGGSLFI---KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE  509 (567)
T ss_dssp             EEEECSCSCCCCE---ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred             EEEecCCCCCEEE---EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence            6666543322222   23478888776552       469999999766     111 122        11245689999


Q ss_pred             EcCCCceEEEeeec---CCeeEEEEee
Q 021459          287 CHPTENKIASAGLD---GDRTVRVWVQ  310 (312)
Q Consensus       287 ~~p~~~~l~~~~~d---gd~~v~iw~~  310 (312)
                      |+|+|..+..+-..   .+..|.++|.
T Consensus       510 ~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          510 FNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             ECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence            99999887766442   2467777664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=6.1e-15  Score=121.97  Aligned_cols=253  Identities=11%  Similarity=0.002  Sum_probs=171.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      .....+.+. ++++.++...++.|.+||..+++.+..+. .......++++++++..++...++.|.+||..+. +....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~-~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY-EITGY  120 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT-EEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC-eEEEE
Confidence            345667774 34555566667999999999999888775 3467889999999854444447899999999875 33333


Q ss_pred             eeccc-----ccEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC-----
Q 021459          103 LRGHS-----DFVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD-----  170 (312)
Q Consensus       103 ~~~~~-----~~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  170 (312)
                      +....     .....+++ . +..++.+.  .++.|.++|+.+++....+.... ....+.++|+|++++++..+     
T Consensus       121 i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSP  197 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred             EEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCc
Confidence            33221     13345555 3 44555554  47899999999998877765433 34678899999988777655     


Q ss_pred             -----CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE--EEccCCceeEEEEE
Q 021459          171 -----GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI--YTGHTNKKYCITST  243 (312)
Q Consensus       171 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~  243 (312)
                           +.|.++|..+++....+..........++++|+++.|.++..  .|.+||..+++....  +.......  ....
T Consensus       198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p--~gi~  273 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY--YGLT  273 (328)
T ss_dssp             SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE--EEEE
T ss_pred             cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce--EEEE
Confidence                 789999999888766553322234567889999998888754  899999987764311  11111222  2233


Q ss_pred             EEccCCcEEEEe----ecCCeEEEEECCchheeecccCCccceEEEEE
Q 021459          244 FSVTNGKYIVSG----SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC  287 (312)
Q Consensus       244 ~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  287 (312)
                      ..+.++.+.++.    ..++.|.+||.. ++.+..+.. ...-..++|
T Consensus       274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred             EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence            443467777777    778999999997 777766653 223355555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.73  E-value=1.4e-13  Score=115.59  Aligned_cols=271  Identities=9%  Similarity=0.007  Sum_probs=172.2

Q ss_pred             EECCCCCEEEEEeC--CC---eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEeC
Q 021459           29 KFSNDGTLLASASL--DK---TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWDA   93 (312)
Q Consensus        29 ~~s~~~~~l~t~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd~   93 (312)
                      ...|++++++....  ..   .|.++|..+++.+..+..-..+  .++++||+++++++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887777653  22   8899999999888777644333  899999999998885          3678999998


Q ss_pred             CCCceeeeeeecc-------cccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCC-C
Q 021459           94 RTPFDCLKTLRGH-------SDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDG-S  162 (312)
Q Consensus        94 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~  162 (312)
                      .+. +.+..+.-.       ...-..+.++||+++|+.++.  ++.|.++| .+++.... +....    ++.+.|++ +
T Consensus       105 ~t~-~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~  178 (373)
T 2mad_H          105 VTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPS  178 (373)
T ss_pred             CCC-cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCc
Confidence            764 333333211       112346889999999998874  47899999 99887666 54322    23445554 4


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcc-----cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--EEEEEEccCC
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLI-----DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--FLKIYTGHTN  235 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~  235 (312)
                      .+++.+.||.+.++|. +++......     ....+......+.+++..++..+.++.+.+.|...+.  .+..+.....
T Consensus       179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~  257 (373)
T 2mad_H          179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence            5667778999999999 766552211     1111212223455565555555578899999986543  2222211100


Q ss_pred             -------ceeEEEEEEEccCCcEEEEeec----------CCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEe
Q 021459          236 -------KKYCITSTFSVTNGKYIVSGSE----------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASA  297 (312)
Q Consensus       236 -------~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~  297 (312)
                             ...........++++.+..+..          ++.|.++|+.+.+.+..+.. ......++|+|+++ .++++
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEE
Confidence                   0000111122355665555432          46899999999988888753 33578999999999 45554


Q ss_pred             eecCCeeEEEEee
Q 021459          298 GLDGDRTVRVWVQ  310 (312)
Q Consensus       298 ~~dgd~~v~iw~~  310 (312)
                      . .++++|.++|.
T Consensus       337 ~-~~~~~V~ViD~  348 (373)
T 2mad_H          337 S-AGTEVLHIYDA  348 (373)
T ss_pred             c-CCCCeEEEEEC
Confidence            3 34578999886

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=2.4e-14  Score=118.39  Aligned_cols=259  Identities=10%  Similarity=0.017  Sum_probs=171.2

Q ss_pred             CCCeEEEEeCCCcceEEEee------eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEE
Q 021459           42 LDKTVIIWSASSLALVHRFV------GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNF  115 (312)
Q Consensus        42 ~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~  115 (312)
                      .++.|.++|..+++....+.      ........+.+. .++..++...++.|.+||..+. +.+..+.. ......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~-~~~~~i~~-~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF-KEVGRITG-FTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC-CEEEEEEC-CSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc-EEEEEcCC-CCCCcEEEE
Confidence            47899999999887765431      112345677774 3555556666899999999875 44455542 355678899


Q ss_pred             ecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-----cCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCceeeEccc
Q 021459          116 NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-----MPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGACLKTLID  189 (312)
Q Consensus       116 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~  189 (312)
                      +++++.+++...++.|.+||+.+++....+....     .....+++ .+++++++.. .++.|.++|+.+++....+..
T Consensus        92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            8888544444478999999999998776665433     13456666 4555555544 488999999999887766543


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecC----------CeEEEEEcCCCcEEEEEEccCC-ceeEEEEEEEccCCcEEEEeecC
Q 021459          190 DKDPAVSFAKFSPNGKFILVGTLD----------STLKLWNYSAGKFLKIYTGHTN-KKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       190 ~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      ..  ....+.++|+|++++++..+          +.|.++|..+++....+..... ....+  .+ .++++.|.++.. 
T Consensus       171 g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l--a~-~~d~~~lyv~~~-  244 (328)
T 3dsm_A          171 GI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV--QL-NGTRDTLYWINN-  244 (328)
T ss_dssp             SS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE--EE-CTTSCEEEEESS-
T ss_pred             CC--CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE--EE-ecCCCEEEEEcc-
Confidence            22  23446689999877776554          7899999988887766653221 22222  33 356777766554 


Q ss_pred             CeEEEEECCchheeec--ccCCccceEEEEEcCCCceEEEeee---cCCeeEEEEeec
Q 021459          259 NCVYVWDLQQKTMIQK--LDGHTDSVISVTCHPTENKIASAGL---DGDRTVRVWVQD  311 (312)
Q Consensus       259 g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~l~~~~~---dgd~~v~iw~~~  311 (312)
                       .|.+||..+++....  +.........++++|++..|..+..   -+.++|.+|+.+
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence             899999987765321  2222456889999995554444430   134688888764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=9.6e-15  Score=117.17  Aligned_cols=238  Identities=8%  Similarity=-0.043  Sum_probs=156.3

Q ss_pred             CEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459           66 GISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  144 (312)
                      ...++++++++++++ +...++.|.+||..+...... ...+.....+++++++++++++.. ++.|.+||...+.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            667899999998776 446788999998765322111 112234567889999998666655 88999999876543322


Q ss_pred             eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      .......+..++++++|+++++...++.|.+|+..+......... .......++++++|+++++...++.|.+||....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            112224678999999999888877888999998765443221111 1123455678999997777777889999998766


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      ...............   ....+++.++++...++.|.+||............+...+.+++++|+++.+++.+  ++++
T Consensus       182 ~~~~~~~~~~~~p~~---i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~--~~~~  256 (270)
T 1rwi_B          182 NQVVLPFTDITAPWG---IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR--GNDR  256 (270)
T ss_dssp             CEEECCCSSCCSEEE---EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG--GGTE
T ss_pred             ceEeecccCCCCceE---EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC--CCCE
Confidence            543322222122222   23345677888877889999999866543332223335689999999998777666  4468


Q ss_pred             EEEEeec
Q 021459          305 VRVWVQD  311 (312)
Q Consensus       305 v~iw~~~  311 (312)
                      |++++.+
T Consensus       257 v~~~~~~  263 (270)
T 1rwi_B          257 VVKLTSL  263 (270)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            8888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=6.4e-13  Score=107.91  Aligned_cols=239  Identities=7%  Similarity=0.002  Sum_probs=160.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee--eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD   98 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~   98 (312)
                      +...+.++++++++.+.++...++.|..|+.. ++. ..+.  .....+..+++.+++.++++...++.|..||. ++..
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            45678999999999988887778899999876 332 2222  23457889999999988887777889999998 3322


Q ss_pred             eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459           99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD  177 (312)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (312)
                      ...........+..++++++++.+++...++.|..||. +++.... .......+..++++++++++++...++.|..||
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            22222233456788999999988877767788999998 6654432 222344578999999999877776788999999


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      . ++.............+..+.++++|..+++...++.|..||. +++ +..+............. . +++.+.++.. 
T Consensus       211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~-~-~~g~l~v~~~-  284 (299)
T 2z2n_A          211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGIC-F-DGETIWFAME-  284 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEE-E-CSSCEEEEET-
T ss_pred             C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEE-e-cCCCEEEEec-
Confidence            8 655433212223345677889999987666657889999998 454 33332221111122222 2 5677666654 


Q ss_pred             CCeEEEEECCch
Q 021459          258 DNCVYVWDLQQK  269 (312)
Q Consensus       258 dg~i~iwd~~~~  269 (312)
                      .+.|..++..+.
T Consensus       285 ~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 CDKIGKLTLIKD  296 (299)
T ss_dssp             TTEEEEEEEC--
T ss_pred             CCcEEEEEcCcc
Confidence            566777776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=1.4e-14  Score=132.80  Aligned_cols=244  Identities=13%  Similarity=0.063  Sum_probs=154.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCC-----CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe--------
Q 021459           21 HSRAVSCVKFSNDGTLLASASLD-----KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRT--------   87 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   87 (312)
                      |...+..++|||||++||.+..+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44578899999999999876543     46999999998875431 12122357899999 88888776553        


Q ss_pred             ------EEEEeCCCCce---eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCC--eEEEEeeecCcC
Q 021459           88 ------LRIWDARTPFD---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTG--KCTRVIRAHSMP  151 (312)
Q Consensus        88 ------v~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~--~~~~~~~~~~~~  151 (312)
                            |++|++.++..   .+.....+...+..+.|+|||++++..+.++     .|++||+.++  +....+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  88999876542   2222223334588999999999888776543     7999999877  313444444444


Q ss_pred             eEEEEEccCCCEEEEeeCC----CeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC-CCc
Q 021459          152 VTSVHFNRDGSLIVSGSHD----GTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS-AGK  225 (312)
Q Consensus       152 v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~  225 (312)
                      .... ++|+|+.|+..+.+    +.|.+||+.++ .....+.......+..+.+. ++.++++...++..++|.+. ++.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            4444 34888888877653    45999998774 23334444444445555565 55677777888887777554 355


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCcEEE-E---eecCCeEEEEECCchh
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGKYIV-S---GSEDNCVYVWDLQQKT  270 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~---~~~dg~i~iwd~~~~~  270 (312)
                      ..+.+..+...  .+......++++.++ +   ....+.|++||+.+++
T Consensus       397 ~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          397 PAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            44444322111  122222234555444 3   3345889999997654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=1.7e-14  Score=132.21  Aligned_cols=271  Identities=13%  Similarity=0.087  Sum_probs=167.8

Q ss_pred             CCCCCEEEEEeCCCe---EEEE--eCC---CcceEEE------eeeccCCEEEEEEccCCCeEEEEcCC-----CeEEEE
Q 021459           31 SNDGTLLASASLDKT---VIIW--SAS---SLALVHR------FVGHSEGISDLAWSSDSHYICSASDD-----RTLRIW   91 (312)
Q Consensus        31 s~~~~~l~t~~~d~~---i~vw--~~~---~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~w   91 (312)
                      +|+|++++....++.   -.+|  +..   .++....      -.+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389998876654432   3444  443   3332211      12233467889999999999877543     469999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCc--------------EEEEEcCCCeE--EEEeee--cCcCeE
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES--------------IRIWEVKTGKC--TRVIRA--HSMPVT  153 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------------i~~wd~~~~~~--~~~~~~--~~~~v~  153 (312)
                      |+.++.. +.. ..+...+..++|+|| +.|+.++.++.              |++|++.+++.  ...+..  +...+.
T Consensus       195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            9988643 221 111122346889999 98888776654              88999877652  223332  223478


Q ss_pred             EEEEccCCCEEEEeeCCC-----eEEEEeCCCC--ceeeEcccCCCCcEEEEEECCCCCEEEEEec----CCeEEEEEcC
Q 021459          154 SVHFNRDGSLIVSGSHDG-----TCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPNGKFILVGTL----DSTLKLWNYS  222 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~  222 (312)
                      .+.|+|||++++..+.++     .|.+||+.++  .....+..........  ++|+|+.|+..+.    ++.|.+||+.
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~--~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF--VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE--EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE--EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            899999999888776543     8999998776  3133444333333333  3488888888765    3459999988


Q ss_pred             CC--cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC-chheeecccC-CccceEEEEEcCCCceEEEe-
Q 021459          223 AG--KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ-QKTMIQKLDG-HTDSVISVTCHPTENKIASA-  297 (312)
Q Consensus       223 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~-  297 (312)
                      ++  .....+. +.... .....+  .++.++++...||..+||.+. ++.....+.. +...+..++++|+++.++.. 
T Consensus       350 ~~~~~~~~l~~-~~~~~-l~~~~~--~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          350 GSTPRFDTVVP-ESKDN-LESVGI--AGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             SSSCEEEEEEC-CCSSE-EEEEEE--EBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             CCccccEEEec-CCCCe-EEEEEE--ECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence            74  3333333 32221 111222  256788889999988877553 3444455543 35678899999998866643 


Q ss_pred             -eecCCeeEEEEee
Q 021459          298 -GLDGDRTVRVWVQ  310 (312)
Q Consensus       298 -~~dgd~~v~iw~~  310 (312)
                       +.....+|++|++
T Consensus       426 ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          426 SSFTQPATVLALDP  439 (741)
T ss_dssp             EETTEEEEEEEEET
T ss_pred             cCCCCCCEEEEEEC
Confidence             3233467888875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.67  E-value=1.5e-13  Score=114.19  Aligned_cols=271  Identities=12%  Similarity=0.148  Sum_probs=175.8

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEe
Q 021459           28 VKFSNDGTLLASASL-----DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWD   92 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd   92 (312)
                      ....|+++.++....     ++.|.+.|..+++.+..+..-..+ . ++++|||+++++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            455789998888765     679999999999999888765555 4 99999999888775          357899999


Q ss_pred             CCCCceeeeeeecc-------cccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE
Q 021459           93 ARTPFDCLKTLRGH-------SDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL  163 (312)
Q Consensus        93 ~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (312)
                      ..+. +.+..+.-.       ...-..+.++||+++++.+..  ++.|.++|+.+++.+..+.....   ...+....+.
T Consensus       116 ~~t~-~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~  191 (386)
T 3sjl_D          116 PVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDT  191 (386)
T ss_dssp             TTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTE
T ss_pred             CCCC-eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCce
Confidence            9875 444443211       012335789999999888764  68899999999998887754321   1223334456


Q ss_pred             EEEeeCCCeEEEEeCCC-CceeeEc---cc-CCCCcEEEEEE-CCCCCEEEEEecCCeEEEEEcCCCc--EEEEEEc---
Q 021459          164 IVSGSHDGTCKIWDAGE-GACLKTL---ID-DKDPAVSFAKF-SPNGKFILVGTLDSTLKLWNYSAGK--FLKIYTG---  232 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~-~~~~~~~---~~-~~~~~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~---  232 (312)
                      +++.+.||.+.+.++.+ ++.....   .. ...+......| .++|+++. .+.+|.|+++|..++.  .+..+..   
T Consensus       192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence            77778888888888875 4432211   11 11111111234 46775554 5568999999987654  2222220   


Q ss_pred             -------cCCceeEEEEEEEccCCcEEEEeec----------CCeEEEEECCchheeecccCCccceEEEEEcCCCc-eE
Q 021459          233 -------HTNKKYCITSTFSVTNGKYIVSGSE----------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KI  294 (312)
Q Consensus       233 -------~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l  294 (312)
                             .......+  ... ++++.+.....          .+.|.+.|+.+++.+.++.. ...+..|+++|+++ +|
T Consensus       271 ~~~~~g~~p~g~q~~--a~~-~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          271 AERADGWRPGGWQQV--AYH-RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLL  346 (386)
T ss_dssp             HHHHTTEEECSSSCE--EEE-TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEE
T ss_pred             ccccccccCCCccee--eEC-CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEE
Confidence                   00111112  222 44555444321          35799999999998888763 34678999999997 45


Q ss_pred             EEeeecCCeeEEEEee
Q 021459          295 ASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       295 ~~~~~dgd~~v~iw~~  310 (312)
                      .++ ..++++|.++|.
T Consensus       347 y~t-n~~~~~VsViD~  361 (386)
T 3sjl_D          347 YAL-STGDKTLYIHDA  361 (386)
T ss_dssp             EEE-ETTTTEEEEEET
T ss_pred             EEE-cCCCCeEEEEEC
Confidence            443 335678888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=8.6e-13  Score=108.09  Aligned_cols=242  Identities=10%  Similarity=0.072  Sum_probs=159.5

Q ss_pred             ecccccceEEEEECCCCCEEEE-------EeCCCeEEEEeCCCcceEEEee----eccCCEEEEEEccC-CCeEEEEcCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLAS-------ASLDKTVIIWSASSLALVHRFV----GHSEGISDLAWSSD-SHYICSASDD   85 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t-------~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d   85 (312)
                      +...-....+++|+++++++++       +..++.|.+|+..+++......    ++...+..++++++ ++++++.. .
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R   91 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence            3444456788999999998888       5677899999987776532221    14567899999999 76555544 4


Q ss_pred             CeEEEEeCCCCceeeee-ee----cccccEEEEEEecCCCEEEEeecC---------------CcEEEEEcCCCeEEEEe
Q 021459           86 RTLRIWDARTPFDCLKT-LR----GHSDFVFCVNFNPQSNLIVSGSFD---------------ESIRIWEVKTGKCTRVI  145 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~l~s~~~d---------------g~i~~wd~~~~~~~~~~  145 (312)
                      ..|.+||.. +.. ... ..    .....+.+++++++++++++...+               +.|..+|.. ++.....
T Consensus        92 ~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           92 LGLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TEEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            478899987 322 111 11    112347789999999887776654               567777765 5443322


Q ss_pred             eecCcCeEEEEEc----cCCCEEE-EeeCCCeEEEEeCC-CCce-----eeEcccCCC-CcEEEEEECCCCCEEEEEecC
Q 021459          146 RAHSMPVTSVHFN----RDGSLIV-SGSHDGTCKIWDAG-EGAC-----LKTLIDDKD-PAVSFAKFSPNGKFILVGTLD  213 (312)
Q Consensus       146 ~~~~~~v~~~~~~----~~~~~l~-~~~~d~~i~iwd~~-~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d  213 (312)
                       .+......++++    |+++.+. +...++.|.+||.. ++..     ...+ .... .....++++++|.++++...+
T Consensus       169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCC
Confidence             233346788999    9996554 44567899999975 3332     1111 1111 345667899999988887788


Q ss_pred             CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEEeecCCeEEEEECCc
Q 021459          214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  268 (312)
                      +.|.+||..+++.+..+..+......+  .+ .++++ ++++...++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i--~~-~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNL--HF-KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEE--EE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeE--EE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999999987666655555443333222  33 46777 555666778999999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.64  E-value=2.2e-14  Score=119.74  Aligned_cols=173  Identities=13%  Similarity=0.093  Sum_probs=131.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---------e-EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA---------L-VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +++.+++++...++++|+.++ +++|+.....         . ......+.. |+.++|  ++.+|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999985 6669765433         1 112234566 999999  89999998 8899999998


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .+.. .......|...+.++.+.+.  .++++..||.|.+||+.+++...    +...|++++|+|+|  ++.|..||.+
T Consensus       114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          114 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             hhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            7643 33344556667877776654  38888999999999999877543    34579999999999  6789999999


Q ss_pred             EEEeCCCCce--eeEcc-----c---CCCCcEEEEEECCCCCEEEEE
Q 021459          174 KIWDAGEGAC--LKTLI-----D---DKDPAVSFAKFSPNGKFILVG  210 (312)
Q Consensus       174 ~iwd~~~~~~--~~~~~-----~---~~~~~~~~~~~~~~~~~l~~~  210 (312)
                      ++|+......  .+++.     .   .+...+..+.|.+++.++++-
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9998877664  33441     1   135678889999999988873

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.63  E-value=2e-12  Score=109.94  Aligned_cols=237  Identities=12%  Similarity=0.110  Sum_probs=155.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--eEEEEeCCCCceee
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--TLRIWDARTPFDCL  100 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~wd~~~~~~~~  100 (312)
                      .....++|+|+++++++...++.|++|+..++........ ..... ++|+++++.|+++..++  .|.+++...... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            4677899999999888877789999999987766544333 33334 99999999998888766  788888765432 1


Q ss_pred             eee---ec-ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE----eeecCcC--eEEEEEcc-CCCEEEEeeC
Q 021459          101 KTL---RG-HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV----IRAHSMP--VTSVHFNR-DGSLIVSGSH  169 (312)
Q Consensus       101 ~~~---~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~--v~~~~~~~-~~~~l~~~~~  169 (312)
                      ..+   .. ......+++++|++..|+.+..++.|+.||..++.....    .......  ...++|+| ++.++++-..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            122   11 334567889999555566577788999999987754322    1111111  23899999 4666677777


Q ss_pred             CCeEEEEeCCCCceeeEcccCC--------------CCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEEccC
Q 021459          170 DGTCKIWDAGEGACLKTLIDDK--------------DPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYTGHT  234 (312)
Q Consensus       170 d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~  234 (312)
                      ++.|..|+....  ...+....              -.....++++++|+++++-. .++.|+.||..++... .+.++.
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCC
Confidence            889999987643  22222211              12356678999999777777 7899999998777643 333321


Q ss_pred             C-------------ceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          235 N-------------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       235 ~-------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .             ........+ .+++.++++-..+++|+.+++
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giav-d~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICY-DGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence            0             011222222 244667777777777776654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=3.5e-12  Score=104.42  Aligned_cols=241  Identities=9%  Similarity=0.100  Sum_probs=154.7

Q ss_pred             CCEEEEEEccCCCeEEE-------EcCCCeEEEEeCCCCceeeeee---ecccccEEEEEEecC-CCEEEEeecCCcEEE
Q 021459           65 EGISDLAWSSDSHYICS-------ASDDRTLRIWDARTPFDCLKTL---RGHSDFVFCVNFNPQ-SNLIVSGSFDESIRI  133 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~-------~~~d~~v~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~  133 (312)
                      ....+++|++++.++++       ...++.|.+||..++.......   .++...+..+.++++ ++++++. ..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            45678999999987777       5678899999976643211111   124456889999999 6555544 4447999


Q ss_pred             EEcCCCeEEEE-eee----cCcCeEEEEEccCCCEEEEeeCC---------------CeEEEEeCCCCceeeEcccCCCC
Q 021459          134 WEVKTGKCTRV-IRA----HSMPVTSVHFNRDGSLIVSGSHD---------------GTCKIWDAGEGACLKTLIDDKDP  193 (312)
Q Consensus       134 wd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~  193 (312)
                      ||.. ++.... ...    ....+..++++++|+++++...+               +.|..+|.. ++... +... ..
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~-~~  172 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTA-FQ  172 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEE-ES
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccC-CC
Confidence            9988 665433 221    12347899999999888776655               567778765 44322 2111 12


Q ss_pred             cEEEEEEC----CCCCEEEEE-ecCCeEEEEEcC-CCcEE--EEEEccCCce-eEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459          194 AVSFAKFS----PNGKFILVG-TLDSTLKLWNYS-AGKFL--KIYTGHTNKK-YCITSTFSVTNGKYIVSGSEDNCVYVW  264 (312)
Q Consensus       194 ~~~~~~~~----~~~~~l~~~-~~d~~i~v~d~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw  264 (312)
                      ....++++    |+++.|.++ ..++.|.+||.. +++..  ..+....... .........+++.++++...++.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            34556788    998766555 567899999986 44321  1221111110 111222334678888887788999999


Q ss_pred             ECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          265 DLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       265 d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      |..+++....+..+...+.+++++|+++.|..++. +++.|..|+++
T Consensus       253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~  298 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQ  298 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET-TTTEEEEEECS
T ss_pred             cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCC
Confidence            98866666666666678999999999986655543 33577777653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.2e-11  Score=100.40  Aligned_cols=238  Identities=11%  Similarity=0.065  Sum_probs=159.2

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR  143 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  143 (312)
                      ...+.++++.++|++.++...++.|.+||.. ..............+..++++++++.+++...++.|..+|.. ++...
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4567899999999988877778999999987 322211222333568889999999888777667889999988 55432


Q ss_pred             E-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          144 V-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       144 ~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      . .......+..+++.++++++++...++.|..+|.. ++...............+.++++++.+++...++.|..+|. 
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  174 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-  174 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence            2 22233568899999999988887778899999987 55432222223345677789999997666666789999998 


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEeeecC
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASAGLDG  301 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dg  301 (312)
                      +++... +........... ....+++.+.++....+.|..||. +++... .+..+...+.++++.++++.+++..  +
T Consensus       175 ~g~~~~-~~~~~~~~~~~~-i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--~  249 (300)
T 2qc5_A          175 TGKLEE-YPLPTNAAAPVG-ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW--G  249 (300)
T ss_dssp             TCCEEE-EECSSTTCCEEE-EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET--T
T ss_pred             CCcEEE-eeCCCCCCCcce-EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc--C
Confidence            555443 322111111222 223356777777777889999998 333222 2333456789999999988666543  3


Q ss_pred             CeeEEEEee
Q 021459          302 DRTVRVWVQ  310 (312)
Q Consensus       302 d~~v~iw~~  310 (312)
                      .+.|..++.
T Consensus       250 ~~~i~~~~~  258 (300)
T 2qc5_A          250 ANQIGRITN  258 (300)
T ss_dssp             TTEEEEECT
T ss_pred             CCeEEEECC
Confidence            456776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.60  E-value=6.6e-13  Score=112.30  Aligned_cols=267  Identities=11%  Similarity=0.110  Sum_probs=173.3

Q ss_pred             CCCCEEEEEeCC-----CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEeCCCC
Q 021459           32 NDGTLLASASLD-----KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWDARTP   96 (312)
Q Consensus        32 ~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd~~~~   96 (312)
                      |+++.++.....     +.|.+.|..+.+.+..+..-..+  .++++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            567766665442     69999999999999888765555  899999999888876          3678999999875


Q ss_pred             ceeeeeeecc-------cccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC-CEEEE
Q 021459           97 FDCLKTLRGH-------SDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG-SLIVS  166 (312)
Q Consensus        97 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  166 (312)
                       +.+..+.-.       ...-..+.++||+++++.+..  ++.|.+.|+.+++.+..+.....    ....|++ ..+++
T Consensus       160 -~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~  234 (426)
T 3c75_H          160 -LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYM  234 (426)
T ss_dssp             -CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEE
T ss_pred             -cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEE
Confidence             334443210       111235789999999998874  57899999999998877654321    2233432 45566


Q ss_pred             eeCCCeEEEEeCCCCceeeE----cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE--EEEEcc-------
Q 021459          167 GSHDGTCKIWDAGEGACLKT----LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL--KIYTGH-------  233 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~-------  233 (312)
                      .+.||.+.+.+..+++....    +.....+......+.+++..++..+..+.|.+.|...+...  ..+...       
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD  314 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence            66777777777754443321    11111121122357888888877788899999998655421  111100       


Q ss_pred             ---CCceeEEEEEEEccCCcEEEEee----------cCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeee
Q 021459          234 ---TNKKYCITSTFSVTNGKYIVSGS----------EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGL  299 (312)
Q Consensus       234 ---~~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~  299 (312)
                         ......+  .+. ++++.+.+..          .++.|.+.|+.+.+.+.++... .....++|+|+++ .++++..
T Consensus       315 g~~p~g~~~v--a~s-~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          315 DWRPGGWQQT--AYH-RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             TEEECSSSCE--EEE-GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             ccccCCceee--EEc-CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcC
Confidence               0000011  233 4455444432          1457999999999988887632 3478999999998 6665553


Q ss_pred             cCCeeEEEEee
Q 021459          300 DGDRTVRVWVQ  310 (312)
Q Consensus       300 dgd~~v~iw~~  310 (312)
                       ++++|.++|.
T Consensus       391 -~s~~VsVID~  400 (426)
T 3c75_H          391 -GTQTLHIYDA  400 (426)
T ss_dssp             -TTTEEEEEET
T ss_pred             -CCCeEEEEEC
Confidence             3578888875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.58  E-value=1.3e-11  Score=105.03  Aligned_cols=236  Identities=8%  Similarity=0.064  Sum_probs=152.2

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC--cEEEEEcCCCeEEE
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE--SIRIWEVKTGKCTR  143 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~  143 (312)
                      ....|+|+++++++++...++.|++||..+.. ....... ..... ++|+++++.|+++..++  .|.+++...+....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            57789999999977777778899999987642 2222222 22223 88999999988888766  78889987665433


Q ss_pred             Ee---ee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE----cccCCCCc-EEEEEECCC-CCEEEEEecC
Q 021459          144 VI---RA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT----LIDDKDPA-VSFAKFSPN-GKFILVGTLD  213 (312)
Q Consensus       144 ~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~-~~~~~~~~~-~~~l~~~~~d  213 (312)
                      .+   .. ....+.+++++|++..|+.+..++.|..||..++.....    ........ ...++++|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            33   12 334567899999444455567788999999876653221    11111111 126779995 5555555677


Q ss_pred             CeEEEEEcCCCcEEEEEEccC---C----------ceeEEEEEEEccCCcEEEEee-cCCeEEEEECCchheeecccCC-
Q 021459          214 STLKLWNYSAGKFLKIYTGHT---N----------KKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQQKTMIQKLDGH-  278 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h-  278 (312)
                      +.|+.|+....  +..+.++.   .          ....... ...+++.++++-. .+++|+.|++.++.. ..+.++ 
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gi-a~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGM-TVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEE-EECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEE-EEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            89999987543  33333322   0          0112222 2346788888888 899999999766543 333322 


Q ss_pred             --------------ccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          279 --------------TDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       279 --------------~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                                    -.....|+++|++..+++-.  +..+|+.+.+
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~--~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA--WGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES--TTCEEEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC--CCCeEEEEEe
Confidence                          23578999999987776655  4567777655

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.58  E-value=3.4e-11  Score=97.97  Aligned_cols=226  Identities=11%  Similarity=0.072  Sum_probs=145.9

Q ss_pred             CEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459           66 GISDLAWSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        66 ~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  144 (312)
                      -.....|++++ .++++...++.|..||..+...  ... .....+.+++++++++++++ . ++.|.+||..+++....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence            34578899964 4566666788999999876532  222 23467889999999995554 3 56799999988875433


Q ss_pred             eeec----CcCeEEEEEccCCCEEEEeeC-----------CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE
Q 021459          145 IRAH----SMPVTSVHFNRDGSLIVSGSH-----------DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       145 ~~~~----~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      ....    ...+..++++|+|+++++...           .+.+..++.. ++.. .+.. .......++|+|+++.|.+
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~-~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFD-QVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEE-EESBEEEEEECTTSCEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEee-ccccccceEEcCCCCEEEE
Confidence            3221    234788999999997765432           2344444443 2222 2211 1223456789999987654


Q ss_pred             -EecCCeEEEEEc--CCCcEE--EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEE
Q 021459          210 -GTLDSTLKLWNY--SAGKFL--KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVIS  284 (312)
Q Consensus       210 -~~~d~~i~v~d~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  284 (312)
                       .+.++.|.+||+  .++...  +.+................+++.+.++...++.|..||..+++.+..+..+...+.+
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~  245 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS  245 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence             456789999997  455432  222211110011122233467888888888899999999888888888777778999


Q ss_pred             EEEc-CCCceEEEeee
Q 021459          285 VTCH-PTENKIASAGL  299 (312)
Q Consensus       285 l~~~-p~~~~l~~~~~  299 (312)
                      ++|. |+++.|..++.
T Consensus       246 ~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          246 CCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEESGGGCEEEEEEB
T ss_pred             EEEeCCCCCEEEEEcC
Confidence            9998 88877655554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.57  E-value=1.1e-12  Score=119.23  Aligned_cols=242  Identities=11%  Similarity=0.143  Sum_probs=149.4

Q ss_pred             ccccceEEEEECCCCCEEEEE-----eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--------
Q 021459           20 AHSRAVSCVKFSNDGTLLASA-----SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--------   86 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------   86 (312)
                      +|...+..++|||||++||-+     +....|++||+.+++.+.... +......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            456678899999999988843     333579999999988654311 11112468899 999888887764        


Q ss_pred             -----eEEEEeCCCCce---eeeeeec-ccccEEEEEEecCCCEEEEeec----CCcEEEEEcCCCe-EEEEeeecCcCe
Q 021459           87 -----TLRIWDARTPFD---CLKTLRG-HSDFVFCVNFNPQSNLIVSGSF----DESIRIWEVKTGK-CTRVIRAHSMPV  152 (312)
Q Consensus        87 -----~v~~wd~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~-~~~~~~~~~~~v  152 (312)
                           .|++|++.++..   .+..... |......+.++||+++++....    ...|+++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 399999876542   2333333 4456788999999998754332    2479999997763 334444454444


Q ss_pred             EEEEEccCCCEEEEee-CC---CeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEEcCC
Q 021459          153 TSVHFNRDGSLIVSGS-HD---GTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWNYSA  223 (312)
Q Consensus       153 ~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~  223 (312)
                      ... +++++..|+..+ .+   +.|..+|+.++..  ...+..+....+   .++++++.|+....++   .|++||+..
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            444 566666555433 33   5788999887543  233444433333   6889998888776544   688998875


Q ss_pred             CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC----CeEEEEECCchh
Q 021459          224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED----NCVYVWDLQQKT  270 (312)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~  270 (312)
                      +. ...+..... .. +......++++.++....+    +.|..||+.+++
T Consensus       360 ~~-~~~l~~p~~-~~-~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          360 KR-VREVALPGL-GS-VSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CE-EEEECCSSS-SE-EEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             Ce-eEEeecCCC-ce-EEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            43 333322111 11 2111122345544443333    889999986653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=1.3e-10  Score=97.57  Aligned_cols=238  Identities=10%  Similarity=-0.026  Sum_probs=156.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeec-------cCCEEEEEEccCCCeEEEEcC--CCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGH-------SEGISDLAWSSDSHYICSASD--DRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   87 (312)
                      .++++|||++++.+.          .++.|.++|..+++.+..+...       ......++|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999988877665422       123457999999999998864  478


Q ss_pred             EEEEeCCCCceeeee-eecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEee-----ecCcCe-EEEEEcc
Q 021459           88 LRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIR-----AHSMPV-TSVHFNR  159 (312)
Q Consensus        88 v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v-~~~~~~~  159 (312)
                      |.++| .+. +.+.. +... +   ++.+.|++ +.+++.+.||.+.++|. +++......     ....++ ....+.+
T Consensus       150 v~viD-~t~-~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          150 VGLVV-QGG-SSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             EEEEE-CCC-CEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            99999 775 44444 3321 1   24445555 45667778999999999 776553221     112222 2234566


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCc--eeeEcccC---------CCCcEEEEEECCCCCEEEEEec----------CCeEEE
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDD---------KDPAVSFAKFSPNGKFILVGTL----------DSTLKL  218 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~----------d~~i~v  218 (312)
                      ++..++..+..+.+.+.|+....  ....+...         .......+.++|+++.+.++..          ++.|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence            65554444577899999986542  12221100         0111334668999988877643          358999


Q ss_pred             EEcCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEEee-cCCeEEEEECCchheeecc
Q 021459          219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGS-EDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  275 (312)
                      +|..+++.+..+..... ...+  .+ .++++ +++++. .++.|.++|+.+.+.+..+
T Consensus       303 ID~~t~~vv~~i~~g~~-p~~i--~~-s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          303 VTGLVGQTSSQISLGHD-VDAI--SV-AQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EECCCCEEEEEEECCCC-cCeE--EE-CCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99999988877754332 2233  23 46777 677776 5899999999998887763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.4e-11  Score=100.59  Aligned_cols=235  Identities=11%  Similarity=0.051  Sum_probs=148.7

Q ss_pred             eeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           15 FKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      .+.+.....-.....|+|+++ ++++...++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            344555556678899999998 66777778999999874 44 3445556677899999999997776666688999987


Q ss_pred             CCCceeeee-eecc-cccEEEEEEecCCCEEEE----eec-------------CCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           94 RTPFDCLKT-LRGH-SDFVFCVNFNPQSNLIVS----GSF-------------DESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        94 ~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      ......+.. ..+. ...+..+.++++++++++    +..             .+.|..+|..+++.....  .......
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g  192 (305)
T 3dr2_A          115 DGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG  192 (305)
T ss_dssp             TSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred             CCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence            532111111 1111 123567899999998886    332             245777887666654333  3345678


Q ss_pred             EEEccCCCEEEEeeCC------CeEEEEeCCCCcee--eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          155 VHFNRDGSLIVSGSHD------GTCKIWDAGEGACL--KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      ++|+|+++.++.+...      +.|..|++..+...  ..+..........+.++++|++.+ ++.+ .|.+|+. +++.
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~  269 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQL  269 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCE
Confidence            9999999977776654      68999998654311  111111112223466899998544 4444 5999997 5666


Q ss_pred             EEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459          227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC  260 (312)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  260 (312)
                      +..+..... ..  ...+. ++++.|..++.++.
T Consensus       270 ~~~~~~~~~-~~--~~~f~-~d~~~L~it~~~~l  299 (305)
T 3dr2_A          270 LGHIPTPGT-AS--NCTFD-QAQQRLFITGGPCL  299 (305)
T ss_dssp             EEEEECSSC-CC--EEEEC-TTSCEEEEEETTEE
T ss_pred             EEEEECCCc-ee--EEEEe-CCCCEEEEEcCCeE
Confidence            666654432 22  22344 66767766666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=1.9e-10  Score=93.59  Aligned_cols=225  Identities=12%  Similarity=0.117  Sum_probs=142.5

Q ss_pred             cccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~   99 (312)
                      +..--.+..|+|++ .++++...++.|..|+..+++.. . ......+.+++++++|+++++.  +..|.+||..+....
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE
Confidence            44455688999965 45666667899999999876552 2 2345779999999999965543  567999998764321


Q ss_pred             -eeeeec--ccccEEEEEEecCCCEEEEeecC---------CcEEEEEcCC-CeEEEEeeecCcCeEEEEEccCCCEE-E
Q 021459          100 -LKTLRG--HSDFVFCVNFNPQSNLIVSGSFD---------ESIRIWEVKT-GKCTRVIRAHSMPVTSVHFNRDGSLI-V  165 (312)
Q Consensus       100 -~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l-~  165 (312)
                       +.....  ....+..++++|+++++++....         ..-.+|.+.. ++... +.........++|+|+++.+ +
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence             111111  12357889999999976654321         2234554432 33322 22233346789999999866 4


Q ss_pred             EeeCCCeEEEEeC--CCCcee--eEcc--cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          166 SGSHDGTCKIWDA--GEGACL--KTLI--DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       166 ~~~~d~~i~iwd~--~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      +.+.++.|..||+  .++...  +.+.  .........++++++|++.++....+.|..||..+++.+..+..+..... 
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t-  244 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT-  244 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE-
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce-
Confidence            5566789999986  344321  1111  11123456678999998888777788999999988888877765543332 


Q ss_pred             EEEEEEccCCcEE
Q 021459          240 ITSTFSVTNGKYI  252 (312)
Q Consensus       240 ~~~~~~~~~~~~l  252 (312)
                       .+.+..++++.|
T Consensus       245 -~~~f~g~d~~~L  256 (297)
T 3g4e_A          245 -SCCFGGKNYSEM  256 (297)
T ss_dssp             -EEEEESGGGCEE
T ss_pred             -EEEEeCCCCCEE
Confidence             234443444444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=1.2e-11  Score=102.85  Aligned_cols=254  Identities=12%  Similarity=0.067  Sum_probs=161.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeecc-------CCEEEEEEccCCCeEEEEcC--CCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGHS-------EGISDLAWSSDSHYICSASD--DRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~   87 (312)
                      .++++|||++++.+.          .++.|.+||..+++.+..+.-..       .....++++|||++|+++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          36789999999999888775321       13456999999999888864  689


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-CeEEEEeeec----CcCeE-EEEEc-cC
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-GKCTRVIRAH----SMPVT-SVHFN-RD  160 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~----~~~v~-~~~~~-~~  160 (312)
                      |.++|+.+. +.+.++.-..  . ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++
T Consensus       162 VsVID~~t~-~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          162 VGVVDLEGK-AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             EEEEETTTT-EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             EEEEECCCC-cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence            999999885 4555553211  1 122333445677778899988888875 5432211111    12222 23554 67


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCc--eeeEcc--c-------CCCCcEEEEEECCCCCEEEEEec----------CCeEEEE
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGA--CLKTLI--D-------DKDPAVSFAKFSPNGKFILVGTL----------DSTLKLW  219 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~--~-------~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~v~  219 (312)
                      |++++ .+.+|.+.+.|+.++.  ....+.  .       ........+.++++++.+.+...          .++|.++
T Consensus       238 G~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi  316 (386)
T 3sjl_D          238 GRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  316 (386)
T ss_dssp             TEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence            76555 4557999999987654  222211  0       00111123556888888877643          2579999


Q ss_pred             EcCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEE-eecCCeEEEEECCchheeecccCCccceEEEEEcCC
Q 021459          220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVS-GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      |..+++.++.+.... ..+.+  .+ .++++ .|++ ...++.|.++|..+++.+..++.-. .-+.+.+++|
T Consensus       317 D~~t~kv~~~i~vg~-~~~~l--av-s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d  384 (386)
T 3sjl_D          317 DAKTGERLAKFEMGH-EIDSI--NV-SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD  384 (386)
T ss_dssp             ETTTCCEEEEEEEEE-EECEE--EE-CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred             ECCCCeEEEEEECCC-CcceE--EE-CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence            999999887765432 11222  23 35665 5555 5568999999999998887775422 2245555554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.4e-12  Score=108.83  Aligned_cols=174  Identities=11%  Similarity=0.109  Sum_probs=126.2

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc----------eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPF----------DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE  135 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd  135 (312)
                      .++.+++++...++++|+.++ +.+|++....          +.. ....+.. |..++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            588899999999999998875 5669764321          111 1223556 999999  88999988 889999999


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST  215 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
                      +++.........+..++.++.+.+.  .+++++.||.+.+||+.++....     ....+++++|+|+|  ++.|..||.
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSC
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCc
Confidence            9877665666677888888877655  38889999999999998776543     23468899999999  678889999


Q ss_pred             EEEEEcCCCcE--EEEEEc------cCCceeEEEEEEEccCCcEEEE
Q 021459          216 LKLWNYSAGKF--LKIYTG------HTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       216 i~v~d~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      +++|+...++.  .+.+..      +......+....+.+++.++++
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999877764  444421      1011233444444566777665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.50  E-value=1.6e-10  Score=95.33  Aligned_cols=224  Identities=12%  Similarity=0.060  Sum_probs=141.9

Q ss_pred             EEEEEEccCC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe
Q 021459           67 ISDLAWSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI  145 (312)
Q Consensus        67 v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  145 (312)
                      ....+|+|++ .++++...++.|..||..+...  ..+. ....+.++.++++++++++. .+ .|.+||..+++.....
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            3568899975 4566666788999999876532  2222 24578899999998877654 34 4999999887754332


Q ss_pred             eec----CcCeEEEEEccCCCEEEEeeC------CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCC
Q 021459          146 RAH----SMPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDS  214 (312)
Q Consensus       146 ~~~----~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~  214 (312)
                      ...    ...+..++++|+|+++++...      .+.|..++  +++.. .+.. .......++|+|+++.++.+ +.++
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA-DISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE-EESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC-CCcccCCeEEcCCCCEEEEEECCCC
Confidence            211    235789999999997765542      24566666  44332 2211 11234567899999877555 4568


Q ss_pred             eEEEEEcC--CC-cE--EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc-
Q 021459          215 TLKLWNYS--AG-KF--LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH-  288 (312)
Q Consensus       215 ~i~v~d~~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-  288 (312)
                      .|.+||+.  ++ ..  ...+................+++.+.++...++.|..||. +++.+..+..+...+.+++|. 
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g  280 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG  280 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEec
Confidence            99999986  55 31  1122111100011222333456777777767789999998 455666666666679999998 


Q ss_pred             CCCceEEEeeec
Q 021459          289 PTENKIASAGLD  300 (312)
Q Consensus       289 p~~~~l~~~~~d  300 (312)
                      |++..|..++..
T Consensus       281 ~d~~~L~vt~~~  292 (326)
T 2ghs_A          281 PDASRLLVTSAR  292 (326)
T ss_dssp             TTSCEEEEEEBC
T ss_pred             CCCCEEEEEecC
Confidence            888777555443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=7.3e-11  Score=96.38  Aligned_cols=228  Identities=12%  Similarity=0.137  Sum_probs=145.0

Q ss_pred             EeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459           59 RFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus        59 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                      .+...........|+|+++ ++++...++.|..|+... .  ...+..+...+..+.++++++++++...++.|..||..
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            3333445567899999998 666777788999998743 2  23344455678899999999977665566789999976


Q ss_pred             CCeEEEEeeec----CcCeEEEEEccCCCEEEE----eeC-------------CCeEEEEeCCCCceeeEcccCCCCcEE
Q 021459          138 TGKCTRVIRAH----SMPVTSVHFNRDGSLIVS----GSH-------------DGTCKIWDAGEGACLKTLIDDKDPAVS  196 (312)
Q Consensus       138 ~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (312)
                       ++........    ...+..++++|+|+++++    |..             .+.|..+|..+++.....   ......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence             5433222111    123567999999998886    432             256788887665543322   122345


Q ss_pred             EEEECCCCCEEEEEecC------CeEEEEEcCCCcE--EEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          197 FAKFSPNGKFILVGTLD------STLKLWNYSAGKF--LKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       197 ~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      .++|+|+++.|.++...      +.|++||+..+..  ...+.. .......+   ...++|++.+ ++.+ .|.+|+..
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi---~~d~~G~lwv-~~~~-gv~~~~~~  266 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF---CVDRGGWLWS-SSGT-GVCVFDSD  266 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSE---EECTTSCEEE-CCSS-EEEEECTT
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeE---EECCCCCEEE-ecCC-cEEEECCC
Confidence            67899999988777654      7899999876541  111211 11111112   2235677544 4444 49999984


Q ss_pred             chheeecccCCccceEEEEEcCCCceEEEeeec
Q 021459          268 QKTMIQKLDGHTDSVISVTCHPTENKIASAGLD  300 (312)
Q Consensus       268 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d  300 (312)
                       ++.+..+..+. .+..++|.|+++.|..++.+
T Consensus       267 -g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          267 -GQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             -SCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             -CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence             55555555444 57889999998888777643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=1.5e-11  Score=102.22  Aligned_cols=255  Identities=12%  Similarity=0.100  Sum_probs=157.5

Q ss_pred             cceEEEEECCCCCEEEEEe--CCCeEEEEeCCCcceEEEe-------eeccCCEEEEEEccCCCeEEEEcC-----CCeE
Q 021459           23 RAVSCVKFSNDGTLLASAS--LDKTVIIWSASSLALVHRF-------VGHSEGISDLAWSSDSHYICSASD-----DRTL   88 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v   88 (312)
                      .....++++|+|+++++..  .++.++||.+.+++.. .+       ..+...+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988863  2343555554444332 22       124467899999999876665433     5789


Q ss_pred             EEEeCCCCceeeeeeec------ccccEEEEEEecCCCE-EEEee---cCCcEEEEEcCCCeEEEEeeecCcCeE-EEEE
Q 021459           89 RIWDARTPFDCLKTLRG------HSDFVFCVNFNPQSNL-IVSGS---FDESIRIWEVKTGKCTRVIRAHSMPVT-SVHF  157 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~  157 (312)
                      .+||+.++. .+..+..      +......+++++++.. +++-.   .++.|.+||+.+++..+.+..|..... ...+
T Consensus        96 ~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999988753 2333321      2234578899986544 45544   578899999998887665544321110 1334


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC-eEEEEEcC---CCc--------
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-TLKLWNYS---AGK--------  225 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~---~~~--------  225 (312)
                      .++|..+.+.+.++.++.|..               ....++++|+++.|.++..++ .+..++..   .+.        
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~---------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHL---------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             EETTEECBEECTTSCEECCCC---------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             eECCEEEEeccCCCceeceec---------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            456766766777777665531               234578999999888876665 55555532   111        


Q ss_pred             EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEee
Q 021459          226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .+... ++......+  . ..+++.++++...++.|.+||..+++....... +...+.++++.+++..+++.+
T Consensus       240 ~~~~~-g~~g~pdgi--a-~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          240 KIERY-SEKPICDGI--S-IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TCEEE-EECCSCSCE--E-ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             ceEec-ccCCCCceE--E-ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            01111 111111112  2 235688999999999999999844443222211 245689999999988777765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=1.1e-10  Score=98.80  Aligned_cols=240  Identities=11%  Similarity=0.066  Sum_probs=158.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeec-------cCCEEEEEEccCCCeEEEEcC--CCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGH-------SEGISDLAWSSDSHYICSASD--DRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   87 (312)
                      .+.++||+++|+.+.          .++.|.++|..+++.+..+.-.       ......++++|||++|+++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999887775          3678999999999988776532       123457899999999998864  578


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEE----eeecCcCe-EEEEEccCC
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRV----IRAHSMPV-TSVHFNRDG  161 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~v-~~~~~~~~~  161 (312)
                      |.+.|+.+. +.+..+.-..    +....|++ ..+++.+.||.+.+.++.+++....    +.....++ ..+.+.+++
T Consensus       202 VsVID~~t~-kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          202 VGVVDLEGK-TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             EEEEETTTT-EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             EEEEECCCC-eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence            999999875 4455444211    12233433 5566677788888778765554321    11112221 234678888


Q ss_pred             CEEEEeeCCCeEEEEeCCCCcee--eEcc--cCC-------CCcEEEEEECCCCCEEEEEec----------CCeEEEEE
Q 021459          162 SLIVSGSHDGTCKIWDAGEGACL--KTLI--DDK-------DPAVSFAKFSPNGKFILVGTL----------DSTLKLWN  220 (312)
Q Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~--~~~~--~~~-------~~~~~~~~~~~~~~~l~~~~~----------d~~i~v~d  220 (312)
                      ..++..+..+.+.+.|.......  ..+.  ...       ......+.++|+++.+.+...          ++.|.++|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence            87777778899999998654321  1110  000       001112468999887777642          35799999


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEEee-cCCeEEEEECCchheeecc
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGS-EDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  275 (312)
                      ..+.+.+..+..... ...+  .+ .++++ ++++.. .++.|.++|+.+.+.+..+
T Consensus       357 ~~T~kvv~~I~vg~~-P~gi--a~-spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AETGERINKIELGHE-IDSI--NV-SQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEEEEEEE-ECEE--EE-CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEECCCC-cCeE--EE-ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999998887754321 2222  23 46777 777777 6999999999999888776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1.5e-09  Score=89.48  Aligned_cols=220  Identities=14%  Similarity=0.039  Sum_probs=138.1

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee-ee
Q 021459           24 AVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC-LK  101 (312)
Q Consensus        24 ~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~-~~  101 (312)
                      -..+..|+|++. ++++...++.|.+|+..+++.. .+ .....+.+++|+++++++++. . ..|.+||..++... +.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-ECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence            456789999755 5566667789999998876543 22 235679999999999877765 3 34899998764321 11


Q ss_pred             eee-c-ccccEEEEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCCCe
Q 021459          102 TLR-G-HSDFVFCVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHDGT  172 (312)
Q Consensus       102 ~~~-~-~~~~v~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~  172 (312)
                      ... + ....+..+.++|+++++++...      .+.|..++  +++... +.........++|+|+++.++. .+.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            111 1 1245788999999987665432      24565666  455433 2223334678999999986654 455789


Q ss_pred             EEEEeCC--CC-cee--eEc--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459          173 CKIWDAG--EG-ACL--KTL--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS  245 (312)
Q Consensus       173 i~iwd~~--~~-~~~--~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
                      |.+||..  ++ ...  ..+  ..........+.++++|.+.++...++.|..||. +++.+..+..+.....  ...+.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~--~~af~  279 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTT--CPAFI  279 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEE--EEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcE--EEEEe
Confidence            9999975  44 311  111  1112234566789999987777666789999998 5666666654433222  22333


Q ss_pred             ccCCcEEE
Q 021459          246 VTNGKYIV  253 (312)
Q Consensus       246 ~~~~~~l~  253 (312)
                      .++++.|.
T Consensus       280 g~d~~~L~  287 (326)
T 2ghs_A          280 GPDASRLL  287 (326)
T ss_dssp             STTSCEEE
T ss_pred             cCCCCEEE
Confidence            24555443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.46  E-value=1.5e-10  Score=104.79  Aligned_cols=258  Identities=14%  Similarity=0.115  Sum_probs=163.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeec--cCCEEEEEEcc---CCCeEEEEc------CCCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGH--SEGISDLAWSS---DSHYICSAS------DDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~~~~------~d~~v~~wd~~~~~~~~~~  102 (312)
                      +..|+.++.|+.+..+|..+++.+.+....  ......+..+|   ++ .+++++      .++.|..||..++...-..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888889999999999999988776542  11111111122   44 444443      3689999999887543221


Q ss_pred             ee--c----------------------------ccccEEEEEEecCCCEEEEeecCCc-------------------EEE
Q 021459          103 LR--G----------------------------HSDFVFCVNFNPQSNLIVSGSFDES-------------------IRI  133 (312)
Q Consensus       103 ~~--~----------------------------~~~~v~~~~~~~~~~~l~s~~~dg~-------------------i~~  133 (312)
                      ..  +                            +......++++|+.+.++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            10  0                            0001125778898889888887753                   999


Q ss_pred             EEcCCCeEEEEeee--cC-------cCeEEEEEccCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCC----------
Q 021459          134 WEVKTGKCTRVIRA--HS-------MPVTSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDK----------  191 (312)
Q Consensus       134 wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------  191 (312)
                      +|.++|+.+-.++.  |.       .+........+|+   .++.++.+|.++++|..+++.+.......          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999998876654  21       1122222223565   78899999999999999998763221110          


Q ss_pred             -----------------CC-----------cEEEEEECCCCCEEEEEec-------------------------------
Q 021459          192 -----------------DP-----------AVSFAKFSPNGKFILVGTL-------------------------------  212 (312)
Q Consensus       192 -----------------~~-----------~~~~~~~~~~~~~l~~~~~-------------------------------  212 (312)
                                       ..           ....++++|+..++.+...                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                             00           0011467888777776532                               


Q ss_pred             --------------CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459          213 --------------DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH  278 (312)
Q Consensus       213 --------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  278 (312)
                                    +|.|+.||+.+++.+-.+..+......   ... ..+.+++.|+.||.++.||.++++.+-+++..
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g---~~~-tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGG---TLS-TAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCC---EEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCc---cce-ECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                          377999999999987666544322111   111 34678888999999999999999988766533


Q ss_pred             cc-ceEEEEEcCCCceEEE
Q 021459          279 TD-SVISVTCHPTENKIAS  296 (312)
Q Consensus       279 ~~-~v~~l~~~p~~~~l~~  296 (312)
                      .. ...-+.+..+|+++++
T Consensus       516 ~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCcccCceEEEECCEEEEE
Confidence            22 2234566778775554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.44  E-value=6.1e-11  Score=107.80  Aligned_cols=237  Identities=14%  Similarity=0.129  Sum_probs=143.8

Q ss_pred             ccCCEEEEEEccCCCeEEEE-----cCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCc-------
Q 021459           63 HSEGISDLAWSSDSHYICSA-----SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES-------  130 (312)
Q Consensus        63 ~~~~v~~~~~~~~~~~l~~~-----~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------  130 (312)
                      |...+..++|+|||++|+-+     +....|++||+.++......+..  .....++|+ |++.|+.++.+..       
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            44567889999999988843     23357999999886432222221  112467899 9999888877743       


Q ss_pred             ------EEEEEcCCCeE--EEEee--e-cCcCeEEEEEccCCCEEEEeeC----CCeEEEEeCCCCc-eeeEcccCCCCc
Q 021459          131 ------IRIWEVKTGKC--TRVIR--A-HSMPVTSVHFNRDGSLIVSGSH----DGTCKIWDAGEGA-CLKTLIDDKDPA  194 (312)
Q Consensus       131 ------i~~wd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~~~~~~~  194 (312)
                            |++|++.+++.  ...+.  . +......+.|+|||++++....    ++.+.++|+.++. ....+.......
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999977643  22232  2 3344678999999998764332    3589999987653 233333333332


Q ss_pred             EEEEEECCCCCEEEEEec----CCeEEEEEcCCCcE--EEEEEccCCceeEEEEEEEccCCcEEEE-eecCC--eEEEEE
Q 021459          195 VSFAKFSPNGKFILVGTL----DSTLKLWNYSAGKF--LKIYTGHTNKKYCITSTFSVTNGKYIVS-GSEDN--CVYVWD  265 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg--~i~iwd  265 (312)
                      .. . ++++|..|+..+.    .+.|..+|+.++..  ...+..+....  +  .+. ++++.|+. ...+|  .|.+||
T Consensus       284 ~~-~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~--~~s-~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          284 VS-L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L--TVH-SGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             EE-E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E--EEE-EETTEEEEEEEETTEEEEEEEC
T ss_pred             EE-E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E--EEE-EECCEEEEEEEECCeeEEEEEE
Confidence            22 2 5666666655443    36799999887643  23444444432  2  333 34555554 44555  688898


Q ss_pred             CCchheeeccc-CCccceEEEEEcCCCceEEEeeec--CCeeEEEEee
Q 021459          266 LQQKTMIQKLD-GHTDSVISVTCHPTENKIASAGLD--GDRTVRVWVQ  310 (312)
Q Consensus       266 ~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~d--gd~~v~iw~~  310 (312)
                      +..+. ...+. .....+..+.++|++..++....+  .-.++..|++
T Consensus       357 ~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          357 YEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             TTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             CCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            87543 33332 234567778888888776655432  2246666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=6.3e-10  Score=100.54  Aligned_cols=259  Identities=14%  Similarity=0.079  Sum_probs=165.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeec-c----CCEEE-EEEccCCCeEEEEcC------CCeEEEEeCCCCceee
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGH-S----EGISD-LAWSSDSHYICSASD------DRTLRIWDARTPFDCL  100 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------d~~v~~wd~~~~~~~~  100 (312)
                      ++..|+.++.|+.+..+|..+++.+.++... .    ..+.+ ...  .+..+++++.      ++.|+.+|..++...-
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3567888889999999999999998877654 1    11211 111  2345555543      6899999998865432


Q ss_pred             eeeecc-------------------------------cccEEEEEEecCCCEEEEeecCC-------------------c
Q 021459          101 KTLRGH-------------------------------SDFVFCVNFNPQSNLIVSGSFDE-------------------S  130 (312)
Q Consensus       101 ~~~~~~-------------------------------~~~v~~~~~~~~~~~l~s~~~dg-------------------~  130 (312)
                      +.....                               ......++++|+++.++.+..++                   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            211100                               00112567889888888777654                   4


Q ss_pred             EEEEEcCCCeEEEEeee--cC-------cCeEEEEEccCC---CEEEEeeCCCeEEEEeCCCCceeeEcccCCCC-----
Q 021459          131 IRIWEVKTGKCTRVIRA--HS-------MPVTSVHFNRDG---SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP-----  193 (312)
Q Consensus       131 i~~wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----  193 (312)
                      |..+|.++|+..-.++.  |.       .....+....+|   ..++.++.+|.+.++|..+++.+.........     
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            99999999998776653  21       112223333467   68899999999999999999876544211100     


Q ss_pred             -----cE------------------------EEEEECCCCCEEEEEec--------------------------------
Q 021459          194 -----AV------------------------SFAKFSPNGKFILVGTL--------------------------------  212 (312)
Q Consensus       194 -----~~------------------------~~~~~~~~~~~l~~~~~--------------------------------  212 (312)
                           .+                        ..++++|+..++.+...                                
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                 00                        12467888888877543                                


Q ss_pred             -----------CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC-cc
Q 021459          213 -----------DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH-TD  280 (312)
Q Consensus       213 -----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~  280 (312)
                                 .+.|..||+.+++.+..+...... ...  ... ..+.+++.++.||.+++||..+++.+..+... ..
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g--~~~-~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  520 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW-NGG--TLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV  520 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC-CCC--EEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC-cCc--ceE-eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc
Confidence                       278999999999877665433211 111  111 34667888899999999999999888776532 22


Q ss_pred             ceEEEEEcCCCceEEEe
Q 021459          281 SVISVTCHPTENKIASA  297 (312)
Q Consensus       281 ~v~~l~~~p~~~~l~~~  297 (312)
                      ...-+.+.++|+.+++.
T Consensus       521 ~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             ccCCEEEEeCCEEEEEE
Confidence            22344566788765544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=1.2e-10  Score=97.01  Aligned_cols=245  Identities=10%  Similarity=0.034  Sum_probs=155.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeec-------cCCEEEEEEccCCCeEEEEcC--CCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGH-------SEGISDLAWSSDSHYICSASD--DRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~   87 (312)
                      .+.++||+++++.+.          .++.|.+||..+++.+..+...       ......++++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888875          3688999999999998888643       123457999999999998864  457


Q ss_pred             EEE--EeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCC-----CeEEE----EeeecCcCeEEE
Q 021459           88 LRI--WDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKT-----GKCTR----VIRAHSMPVTSV  155 (312)
Q Consensus        88 v~~--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~-----~~~~~----~~~~~~~~v~~~  155 (312)
                      +.+  +|..+    +..+.-. +.   ....|++ ..+++.+.||.+.+.|+.+     ++...    .+.....+.   
T Consensus       149 v~V~~iD~~t----v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---  217 (368)
T 1mda_H          149 AGLSVPGASD----DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---  217 (368)
T ss_dssp             EEEEETTTEE----EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---
T ss_pred             EEEEEEchhh----ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---
Confidence            888  88765    2222211 10   1123443 3455667788888888876     33221    111122333   


Q ss_pred             EEccCCCEEEEeeCCCeEEEEeCCCCc--eeeEcccC------CC---CcEEEEEECCCCCEEEEEec-C--------Ce
Q 021459          156 HFNRDGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDD------KD---PAVSFAKFSPNGKFILVGTL-D--------ST  215 (312)
Q Consensus       156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~-d--------~~  215 (312)
                      . .+++..++..+. +.+.+.|.....  ....+...      ..   .....+.++|+++.+.++.. .        +.
T Consensus       218 ~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~  295 (368)
T 1mda_H          218 Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence            3 566666666666 899999986532  22211100      00   00111468999998887643 2        35


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEEee-cCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGS-EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      +.++|..+.+.+..+.... ....+  .+ .++++ ++++.. .++.|.++|+.+.+.+..+..... ...+++++
T Consensus       296 ~~ViD~~t~~vv~~i~vg~-~p~gi--~~-s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          296 TSSVTASVGQTSGPISNGH-DSDAI--IA-AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEEESSSCCEEECCEEEE-EECEE--EE-CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             EEEEECCCCeEEEEEECCC-CcceE--EE-CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            6799999998877654332 12222  33 35666 566666 699999999999999988875443 35666654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.36  E-value=3.1e-13  Score=113.45  Aligned_cols=188  Identities=13%  Similarity=0.081  Sum_probs=106.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc-ccEE
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-DFVF  111 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-~~v~  111 (312)
                      ++..+++++.|+.|+.||..+++.+.++..  ..+.+..+..++..+++++.|+.|+.||..++.. +.....+. ..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence            578899999999999999999999887775  4555555566777888888999999999876533 22222221 1110


Q ss_pred             -EEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC
Q 021459          112 -CVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       112 -~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (312)
                       +..+. ++..+++++.++.|+.||.++|+.+..+..+.    ...++|++..+++++.++.+..||.++++..-++...
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence             01111 34567888889999999999998876665443    2345678888999999999999999988765433211


Q ss_pred             CCCcEEEEEECCCC---CEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          191 KDPAVSFAKFSPNG---KFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       191 ~~~~~~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .   .....++++.   ..+++++.+|.|+.||..+++.+..+.
T Consensus       160 ~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          160 D---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             E---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             c---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            0   1111123321   457778899999999999998766554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=1.1e-10  Score=97.19  Aligned_cols=248  Identities=9%  Similarity=-0.016  Sum_probs=155.1

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEeCCCCceeeeeeecc-------c
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWDARTPFDCLKTLRGH-------S  107 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd~~~~~~~~~~~~~~-------~  107 (312)
                      .|.+.|..+++.+.++..-..+  .+.++||+++++++.          .++.|.+||+.+. +.+..+...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCccccccC
Confidence            8889999999999988765556  799999999988886          3678999999885 445554322       0


Q ss_pred             ccEEEEEEecCCCEEEEeec--CCcEEE--EEcCCCeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCC--
Q 021459          108 DFVFCVNFNPQSNLIVSGSF--DESIRI--WEVKTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGE--  180 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~--dg~i~~--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--  180 (312)
                      ..-..+.++||+++++.+..  +..|.+  +|+.+   ...+.....    ..+.|++ ..+++.+.|+.+.+.|..+  
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~  196 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence            12346889999999998875  356888  88877   333332111    1123443 3455666788888888876  


Q ss_pred             ---CceeeE----cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--EEEEEEccC-----CceeEEE---EE
Q 021459          181 ---GACLKT----LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--FLKIYTGHT-----NKKYCIT---ST  243 (312)
Q Consensus       181 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~-----~~~~~~~---~~  243 (312)
                         ++....    +.....+ .   . .+++..++..+. +.|.+.|.....  .+..+....     .......   ..
T Consensus       197 ~~~~~v~~~~t~~i~vg~~P-~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQA-A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCC-E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             ccCCeEEEEeeeeeeCCCCc-c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence               332211    1111122 2   2 455566666656 899999986532  222221100     0000000   12


Q ss_pred             EEccCCcEEEEeec---------CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          244 FSVTNGKYIVSGSE---------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       244 ~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +. ++++.+..+..         ++.+.++|+.+.+.+..+.... ....++++|++++++.+...++++|.++|.
T Consensus       271 ~s-~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          271 KL-KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EE-TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             Ec-CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            33 55655554322         2356699999998888876443 578999999998766655434578999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.32  E-value=3.8e-09  Score=88.78  Aligned_cols=259  Identities=10%  Similarity=0.040  Sum_probs=156.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccE--
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFV--  110 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v--  110 (312)
                      ++..++.++.++.|..+|..+++.+.+.............  .+..++.++.++.+..+|..++... -.........  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~-W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVK-WTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEE-EEEeCCCCceee
Confidence            4556777888999999999999887766543322112222  2447777888999999999876433 2222111100  


Q ss_pred             ---EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC----eE---EEEEcc--CCCEEEEeeCCCeEEEEeC
Q 021459          111 ---FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP----VT---SVHFNR--DGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       111 ---~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~l~~~~~d~~i~iwd~  178 (312)
                         ......  +..++.+..++.|..+|..+++...........    +.   .+...|  .+..++.++.++.+..+|.
T Consensus       179 ~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          179 RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence               111122  456788888999999999999876554422100    00   000111  2456777788999999999


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEEEEEEEccCCcEEEEeec
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~  257 (312)
                      .+++..-....   ........  ++..+.+++.++.|..+|..+++.+.......... ....  .   .+..|+.++.
T Consensus       257 ~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~--~---~~~~l~v~~~  326 (376)
T 3q7m_A          257 RSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV--L---YNGNLVVGDS  326 (376)
T ss_dssp             TTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE--E---ETTEEEEECT
T ss_pred             CCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE--E---ECCEEEEEeC
Confidence            98876654322   11222222  45678888889999999999998765554211111 1111  1   2457888889


Q ss_pred             CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       258 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +|.|.++|..+++.+.........+...... .+..|..++.+  +.|..|+
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~--G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKD--GTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTT--SCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCC--CEEEEEe
Confidence            9999999999888766554322222211111 24566667755  4666664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=2.1e-09  Score=97.36  Aligned_cols=194  Identities=14%  Similarity=0.169  Sum_probs=122.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC----------E-EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG----------I-SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      +..|+.++.++.|..+|..+++.+.++......          + ..+++  .+..+++++.|+.|..+|..++...-+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            556777778899999999999988876543210          1 11222  3567888889999999999887544322


Q ss_pred             eec-ccccEEEEEEec--CCCEEEEee------cCCcEEEEEcCCCeEEEEeeecC------------------------
Q 021459          103 LRG-HSDFVFCVNFNP--QSNLIVSGS------FDESIRIWEVKTGKCTRVIRAHS------------------------  149 (312)
Q Consensus       103 ~~~-~~~~v~~~~~~~--~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~------------------------  149 (312)
                      ... +......+..+|  .+..++.+.      .+|.|..||.++|+.+-.+....                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            211 111000011111  123444443      36899999999998776554210                        


Q ss_pred             -------cCeEEEEEccCCCEEEEeeCCCe-------------------EEEEeCCCCceeeEcccC-C-------CCcE
Q 021459          150 -------MPVTSVHFNRDGSLIVSGSHDGT-------------------CKIWDAGEGACLKTLIDD-K-------DPAV  195 (312)
Q Consensus       150 -------~~v~~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~~~~~~~~~~-~-------~~~~  195 (312)
                             .....++++|++.+++.++.++.                   |..+|..+++..-.+... +       ....
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                   01125678888888888887763                   999999999876554321 1       1112


Q ss_pred             EEEEECCCCC---EEEEEecCCeEEEEEcCCCcEEEE
Q 021459          196 SFAKFSPNGK---FILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       196 ~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      .......+|+   .++.++.+|.++++|..+|+.+..
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            2222223554   788899999999999999998743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.29  E-value=7.5e-09  Score=86.96  Aligned_cols=261  Identities=7%  Similarity=0.002  Sum_probs=154.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeecc---------CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHS---------EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .+..++.++.++.|..+|..+++.+.......         ..+... ...++..+++++.++.|..+|..++...- ..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W-~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW-QT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE-EE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE-EE
Confidence            35678888888999999999998876655421         222221 12245677778889999999998764332 22


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe-----EEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV-----TSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      .............  +..++.++.++.|..+|.++++.+..........     .....  .+..++.++.++.+..+|.
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEET
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEEC
Confidence            2211111111122  4577788889999999999998776554322111     11122  2346778888999999999


Q ss_pred             CCCceeeEcccCCCCcE---EE---EEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          179 GEGACLKTLIDDKDPAV---SF---AKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~---~~---~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      .+++..-..........   ..   ....|  .+..+.+++.++.+..+|..+++.+.....  ......    . ..+.
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~----~-~~~~  278 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDF----I-VDGN  278 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEE----E-EETT
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCc----e-EECC
Confidence            98877654432110000   00   00011  245777788899999999999987654432  111111    1 1255


Q ss_pred             EEEEeecCCeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          251 YIVSGSEDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+..++.+|.|..+|..+++..-.... ....+.....  .+..|..++.+  +.|..++.
T Consensus       279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~--g~l~~~d~  335 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE--GYLHWINV  335 (376)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTT--SEEEEEET
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCC--CeEEEEEC
Confidence            777788899999999988876544431 1111122222  23456666543  45666553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=1.4e-12  Score=109.49  Aligned_cols=203  Identities=14%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-CeE
Q 021459           75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-PVT  153 (312)
Q Consensus        75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~  153 (312)
                      ++..+++++.|+.|+.||..++.. +-....  +.+.+..+..++..+++++.||.|+.||.++++.+..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            577889999999999999988744 333333  3344444556677888888999999999988876554432211 010


Q ss_pred             -EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          154 -SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       154 -~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                       ...+. ++..+++++.++.+..||..+++....+....     ....+|++..+++++.++.|+.||.++++.+..+..
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence             00111 34567788899999999999988765543221     123456888899999999999999998876543321


Q ss_pred             cCCceeEEEEEEEccC---CcEEEEeecCCeEEEEECCchheeecccCCccceEE-EEEcCCCc
Q 021459          233 HTNKKYCITSTFSVTN---GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVIS-VTCHPTEN  292 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~  292 (312)
                      .....  .  . ...+   ...+++++.||.|..||..+++.+-... ...++.. ..+++++.
T Consensus       159 ~~~~~--~--~-~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          159 FDYAA--S--L-PEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEECC--B--C-CCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred             ccccC--c--c-ccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence            11000  0  0 0111   1456778899999999999887765544 2334433 34555553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.28  E-value=9.2e-08  Score=76.29  Aligned_cols=250  Identities=9%  Similarity=-0.023  Sum_probs=147.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCcce-----EEEeeeccCCEEEEEEccCCCeEEE-EcCCCeEEEEeCCCCceeeeeeecccc
Q 021459           35 TLLASASLDKTVIIWSASSLAL-----VHRFVGHSEGISDLAWSSDSHYICS-ASDDRTLRIWDARTPFDCLKTLRGHSD  108 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~wd~~~~~~~~~~~~~~~~  108 (312)
                      ++|+.+.. +.|+.++......     ...+......+..++|++++..|+. -...+.|..+++.... ..........
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence            34545443 4677777765432     1112222245678999997665554 4456789999986532 1222222223


Q ss_pred             cEEEEEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCcee
Q 021459          109 FVFCVNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACL  184 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~  184 (312)
                      ....+++++++..++.+ ...+.|.++++..................++++|++..+..+..   .+.|..+++... ..
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~  158 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NR  158 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CC
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-Cc
Confidence            56789999976555544 45678999998654322222222235688999996555544443   467888876532 22


Q ss_pred             eEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEE
Q 021459          185 KTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV  263 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  263 (312)
                      ..+..........+++++++..|..+ ...+.|.++|............ ......+  ..  .++.++++...++.|..
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi--~~--d~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAV--TS--YGKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEE--EE--ETTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEE--EE--eCCEEEEEECCCCeEEE
Confidence            22222222345667899987766555 4568999999865443333332 1222222  22  34556666667799999


Q ss_pred             EECCchheeecccCCc-cceEEEEEcCCCc
Q 021459          264 WDLQQKTMIQKLDGHT-DSVISVTCHPTEN  292 (312)
Q Consensus       264 wd~~~~~~~~~~~~h~-~~v~~l~~~p~~~  292 (312)
                      +|..+++.+..+.... .....+++.|++.
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EeCCCCCceEEEccccccccceeeecCccC
Confidence            9998887777765432 2357788888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=3.2e-09  Score=95.97  Aligned_cols=268  Identities=12%  Similarity=0.094  Sum_probs=166.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC----------E-EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG----------I-SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      +..|+.++.++.|..+|..+++.+.++......          + ..+++  ++..|++++.|+.|..+|..++...- .
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W-~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW-H  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE-E
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe-e
Confidence            456667777889999999999988776543210          1 12222  45678888899999999998875432 2


Q ss_pred             eecc-c----ccEE-EEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecCcC-------------------
Q 021459          103 LRGH-S----DFVF-CVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHSMP-------------------  151 (312)
Q Consensus       103 ~~~~-~----~~v~-~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~-------------------  151 (312)
                      .... .    ..+. ....  .+..++.++.      ++.|+.+|.++|+.+-.+......                   
T Consensus       154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             ecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            2222 1    1111 1111  1345555543      689999999999887655432111                   


Q ss_pred             -------------eEEEEEccCCCEEEEeeCCC-------------------eEEEEeCCCCceeeEcccCC--------
Q 021459          152 -------------VTSVHFNRDGSLIVSGSHDG-------------------TCKIWDAGEGACLKTLIDDK--------  191 (312)
Q Consensus       152 -------------v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~--------  191 (312)
                                   ...++++|++..++.++.++                   .|..+|..+++..-.+....        
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         12467888888888877664                   48999999988765543211        


Q ss_pred             CCcEEEEEECCCC---CEEEEEecCCeEEEEEcCCCcEEEEEEccCCce--------eEE--------------------
Q 021459          192 DPAVSFAKFSPNG---KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK--------YCI--------------------  240 (312)
Q Consensus       192 ~~~~~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--------~~~--------------------  240 (312)
                      ...........+|   +.++.++.+|.++++|..+++.+..+.......        ..+                    
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G  391 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG  391 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence            1112222333467   678899999999999999999876554221100        000                    


Q ss_pred             -----EEEEEccCCcEEEEeec-------------------------------------------CCeEEEEECCchhee
Q 021459          241 -----TSTFSVTNGKYIVSGSE-------------------------------------------DNCVYVWDLQQKTMI  272 (312)
Q Consensus       241 -----~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~  272 (312)
                           ...+. ++..++++...                                           .|.|..||+.+++.+
T Consensus       392 ~~~w~~~a~d-p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          392 AHNWHPMSFN-PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             SSCSSCCEEE-TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCceEc-CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 01122 34445544322                                           278999999988776


Q ss_pred             ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          273 QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       273 ~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      -.++ +..++....+...+..++.++  .++.+++|+.
T Consensus       471 W~~~-~~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~  505 (677)
T 1kb0_A          471 WSVE-HVSPWNGGTLTTAGNVVFQGT--ADGRLVAYHA  505 (677)
T ss_dssp             EEEE-ESSSCCCCEEEETTTEEEEEC--TTSEEEEEET
T ss_pred             eecC-CCCCCcCcceEeCCCEEEEEC--CCCcEEEEEC
Confidence            5554 233344455666777777776  4568888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.22  E-value=9.9e-08  Score=80.24  Aligned_cols=223  Identities=12%  Similarity=0.153  Sum_probs=139.2

Q ss_pred             cCCCeEE-EEcCCCeEEEEeCCCCc---eeeeeee------ccc-ccEEEEEEecCCCEEEEeecC------CcEEEEEc
Q 021459           74 SDSHYIC-SASDDRTLRIWDARTPF---DCLKTLR------GHS-DFVFCVNFNPQSNLIVSGSFD------ESIRIWEV  136 (312)
Q Consensus        74 ~~~~~l~-~~~~d~~v~~wd~~~~~---~~~~~~~------~~~-~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~  136 (312)
                      +++++|+ .+..++.|.++|+.+..   +..+.++      ... ..-..+...|++ .++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            6777665 45667899999986421   2333332      001 122345667998 77766555      78999999


Q ss_pred             CCCeEEEEeeecCcC---eEEEEEccCCCEEEEee-------------------CCCeEEEEeCCCCceeeEcccC-CCC
Q 021459          137 KTGKCTRVIRAHSMP---VTSVHFNRDGSLIVSGS-------------------HDGTCKIWDAGEGACLKTLIDD-KDP  193 (312)
Q Consensus       137 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-~~~  193 (312)
                      ++.+.+..+.....+   -+.+.|+|+++.+++..                   ...+|.+||+.+++...++... ...
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999988877633222   34688899999888874                   3689999999988776665432 112


Q ss_pred             cEEEEEE--CCCCCEEEEEe------cCCeEEEEEcCCCcEE--EEEEccCC----------------ceeEEEEEEEcc
Q 021459          194 AVSFAKF--SPNGKFILVGT------LDSTLKLWNYSAGKFL--KIYTGHTN----------------KKYCITSTFSVT  247 (312)
Q Consensus       194 ~~~~~~~--~~~~~~l~~~~------~d~~i~v~d~~~~~~~--~~~~~~~~----------------~~~~~~~~~~~~  247 (312)
                      ....+.|  +|+++++.++.      .+++|.+|....++..  +.+.....                ... .......+
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~-pa~I~lS~  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL-VTDIDISL  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC-CCCEEECT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc-eeEEEECC
Confidence            2223334  99999888776      4678988877665432  11110000                001 11122346


Q ss_pred             CCcEEEEe-ecCCeEEEEECCch---heeecccCC-----------c---cceEEEEEcCCCceEEEee
Q 021459          248 NGKYIVSG-SEDNCVYVWDLQQK---TMIQKLDGH-----------T---DSVISVTCHPTENKIASAG  298 (312)
Q Consensus       248 ~~~~l~~~-~~dg~i~iwd~~~~---~~~~~~~~h-----------~---~~v~~l~~~p~~~~l~~~~  298 (312)
                      ++++|.++ -..+.|.+||+...   +++..+.-.           .   ..-..++++|+|++|.++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            78877554 45789999998532   333333211           0   1247889999999998887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=3.3e-09  Score=88.02  Aligned_cols=199  Identities=12%  Similarity=0.083  Sum_probs=128.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeC-----CCeEEEEeCCCcceEEEeeec------cCCEEEEEEccCCCeE-EEEc---C
Q 021459           20 AHSRAVSCVKFSNDGTLLASASL-----DKTVIIWSASSLALVHRFVGH------SEGISDLAWSSDSHYI-CSAS---D   84 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~-----d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~   84 (312)
                      .|...+.++++++++++.++-..     ++.|.+||..+++.+..+...      ...+..+++++++..+ ++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999886665433     578999999988876665432      2346889999865444 4444   5


Q ss_pred             CCeEEEEeCCCCceeeeeeecc-----------------------------cccEEEEEEecCCCEEEEeecCC-cEEEE
Q 021459           85 DRTLRIWDARTPFDCLKTLRGH-----------------------------SDFVFCVNFNPQSNLIVSGSFDE-SIRIW  134 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~s~~~dg-~i~~w  134 (312)
                      ++.|.+||+.+.. ..+.+.+|                             ...+..++++|+++.|+.+...+ .+..+
T Consensus       144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            7889999987542 22222221                             01357799999999888877665 45545


Q ss_pred             EcC---CCe-----EEE--EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC
Q 021459          135 EVK---TGK-----CTR--VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG  204 (312)
Q Consensus       135 d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
                      +..   .+.     ...  ....+......++++++|.++++...++.|.+||..+++...............+++++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            432   110     000  1112233456789999999999998999999999855543222211112346677898988


Q ss_pred             CEEEEEecCCeEEEE
Q 021459          205 KFILVGTLDSTLKLW  219 (312)
Q Consensus       205 ~~l~~~~~d~~i~v~  219 (312)
                      .++++.+..+.+.+|
T Consensus       303 ~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          303 YLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEEECCGGGSGGG
T ss_pred             cEEEEeCcccccccc
Confidence            877777655444333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=1.2e-07  Score=74.78  Aligned_cols=206  Identities=12%  Similarity=0.047  Sum_probs=137.1

Q ss_pred             ceeceeeeccccc--ceEEEEECCCCCEEEEEeC--CCeEEEEeCCCcceEEEeeeccC-CEEEEEEccCCCeEE-EEcC
Q 021459           11 PYRHFKTLTAHSR--AVSCVKFSNDGTLLASASL--DKTVIIWSASSLALVHRFVGHSE-GISDLAWSSDSHYIC-SASD   84 (312)
Q Consensus        11 ~~~~~~~~~~h~~--~v~~~~~s~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~   84 (312)
                      .++...++ .|..  ....+.|+|++.+.++.+.  ++.|++.|..+++.+..+.-... ....+++.  ++.|. +.-.
T Consensus         8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34555555 4553  3689999998765555543  57999999999998887653221 22345554  44444 4456


Q ss_pred             CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--Cc---CeEEEEEcc
Q 021459           85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SM---PVTSVHFNR  159 (312)
Q Consensus        85 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~---~v~~~~~~~  159 (312)
                      ++.+.++|..+. +.+..+......-  ..+.+|++.++.+..++.|.+.|..+.+....+...  ..   ..+.+.|. 
T Consensus        85 ~~~v~viD~~t~-~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           85 KNIGFIYDRRTL-SNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             CSEEEEEETTTT-EEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECCCC-cEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            789999999874 4455553221111  234567777777777889999999998877766532  12   25677887 


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCceeeEcccC------------CCCcEEEEEECCCCCEEEE-EecCCeEEEEEcCC
Q 021459          160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDD------------KDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSA  223 (312)
Q Consensus       160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~  223 (312)
                      +++.++....++.|.+.|..+++.+..+...            .......++++|+++.+.+ +...+.|.+.++..
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            7776666667889999999999887766321            1124567889999875554 55677888887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=6.5e-08  Score=81.32  Aligned_cols=190  Identities=12%  Similarity=0.156  Sum_probs=123.6

Q ss_pred             CCCCEEEE-EeCCCeEEEEeCCCc----ceEEEee------ec-cCCEEEEEEccCCCeEEEEcCC------CeEEEEeC
Q 021459           32 NDGTLLAS-ASLDKTVIIWSASSL----ALVHRFV------GH-SEGISDLAWSSDSHYICSASDD------RTLRIWDA   93 (312)
Q Consensus        32 ~~~~~l~t-~~~d~~i~vw~~~~~----~~~~~~~------~~-~~~v~~~~~~~~~~~l~~~~~d------~~v~~wd~   93 (312)
                      +++++|+. +..++.|.|+|+.+.    +....++      .. ...-..+...|+| +++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77876654 566789999998754    4444442      01 1134567788999 66666555      78999998


Q ss_pred             CCCceeeeeeecc---cccEEEEEEecCCCEEEEee-------------------cCCcEEEEEcCCCeEEEEeeec-C-
Q 021459           94 RTPFDCLKTLRGH---SDFVFCVNFNPQSNLIVSGS-------------------FDESIRIWEVKTGKCTRVIRAH-S-  149 (312)
Q Consensus        94 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~-------------------~dg~i~~wd~~~~~~~~~~~~~-~-  149 (312)
                      .+. +.+..+...   ...-..+.|+|+++.+++..                   .+.+|.+||+.+++.+..+... . 
T Consensus       172 ~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          172 YSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            874 455555421   12234577899999999885                   3688999999998877766542 1 


Q ss_pred             cCeEEEEE--ccCCCEEEEeeC------CCeEEEEeCCCCcee--eEc--ccC---------------CCCcEEEEEECC
Q 021459          150 MPVTSVHF--NRDGSLIVSGSH------DGTCKIWDAGEGACL--KTL--IDD---------------KDPAVSFAKFSP  202 (312)
Q Consensus       150 ~~v~~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~--~~~--~~~---------------~~~~~~~~~~~~  202 (312)
                      .....+.|  +|+++++.++..      +++|.+|....+...  ..+  ...               .......+.+++
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23345555  999998877764      557766544333211  100  000               012345567999


Q ss_pred             CCCEEEEEec-CCeEEEEEcCC
Q 021459          203 NGKFILVGTL-DSTLKLWNYSA  223 (312)
Q Consensus       203 ~~~~l~~~~~-d~~i~v~d~~~  223 (312)
                      ||++|.++.. .+.|.+||+..
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEeCCCCEEEEEEecC
Confidence            9999988754 68999999863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.17  E-value=2.9e-09  Score=87.55  Aligned_cols=263  Identities=14%  Similarity=0.087  Sum_probs=152.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      ...+.++...+++.+.+ ++.+  +..+|. +++.+..+...........+.  +..|..++.++.+..+|.. +.. ..
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~  130 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KW  130 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EE
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EE
Confidence            34456667766665443 3333  777775 444333222222222233333  4567778888999999987 433 32


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (312)
                      ........+.++...+++. ++.++.++.|..+|.. ++....+......+.++...+++.+++..   +.+..+| .++
T Consensus       131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g  204 (330)
T 3hxj_A          131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG  204 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred             EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence            3333334455556666665 5556777899999988 77665555545556777777788765544   7889999 666


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV  261 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  261 (312)
                      +........ ...+..+..+++|. |.+++.++.|..+|. +++.+..+.........+   .. ..+..|..++.+|.|
T Consensus       205 ~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~---~~-~~~g~l~v~t~~ggl  277 (330)
T 3hxj_A          205 TEKWNFYAG-YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP---VI-GNTDTIYFGSYDGHL  277 (330)
T ss_dssp             CEEEEECCS-SCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCC---EE-CTTSCEEEECTTCEE
T ss_pred             cEEEEEccC-CcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccc---eE-cCCCeEEEecCCCCE
Confidence            554443322 22344455677765 555677888888874 555555444332211111   11 223456678888889


Q ss_pred             EEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          262 YVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       262 ~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ..+|. +++....+......+.++...+++..+ .++.+|  .+++..
T Consensus       278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G--~~~~~~  321 (330)
T 3hxj_A          278 YAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNG--KFYALF  321 (330)
T ss_dssp             EEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTS--CEEEEE
T ss_pred             EEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCC--eEEEEe
Confidence            99996 555544444344556667776776544 466444  555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.16  E-value=1.3e-07  Score=77.70  Aligned_cols=236  Identities=11%  Similarity=0.106  Sum_probs=144.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee--------------------ccCCEEEEEEcc-CCCeEEE
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG--------------------HSEGISDLAWSS-DSHYICS   81 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~   81 (312)
                      ..-.+++++++++++.++..++.|..|+..++... .+..                    ....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            34566889999997888888899999987765432 2211                    113578899998 565 444


Q ss_pred             EcCCCeEEEEeCCCCc-eeeee-eec-ccccEEEEEEec-CCCEEEEeec-----------------CCcEEEEEcCCCe
Q 021459           82 ASDDRTLRIWDARTPF-DCLKT-LRG-HSDFVFCVNFNP-QSNLIVSGSF-----------------DESIRIWEVKTGK  140 (312)
Q Consensus        82 ~~~d~~v~~wd~~~~~-~~~~~-~~~-~~~~v~~~~~~~-~~~~l~s~~~-----------------dg~i~~wd~~~~~  140 (312)
                      +...+.+..+|..+.. +.+.. ..+ .......+++.+ +++..++-..                 ++.|..+|..+++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5444558888876431 11111 111 112456788999 8887766432                 3678889987776


Q ss_pred             EEEEeeecCcCeEEEEEccCCCEEEEe-eCCCeEEEEeCCCCc--eeeEcccCCCCcEEEEEECCCCCEEEEEec-----
Q 021459          141 CTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGTCKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGKFILVGTL-----  212 (312)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  212 (312)
                      ....... ......++++|+++.+..+ +..+.|..|++....  ....+.. ... ...++++++|++.++...     
T Consensus       177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc
Confidence            4332222 1234678999999865544 566889999986421  1111111 112 556788999987666544     


Q ss_pred             -----CCeEEEEEcCCCcEEEEEEccCC----ceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          213 -----DSTLKLWNYSAGKFLKIYTGHTN----KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       213 -----d~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                           .+.|..+|. .++.+..+.....    ....+  ..  .++.+.++...++.|..+++..
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~--~~--~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQI--QE--HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEE--EE--ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEE--EE--eCCEEEEeecCCCceEEEeccc
Confidence                 467888886 4676666654321    11222  12  3567777777888999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=3.7e-08  Score=76.86  Aligned_cols=194  Identities=9%  Similarity=0.084  Sum_probs=129.2

Q ss_pred             ceeceeeecccccc--eEEEEECCCCCEEEEEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCC
Q 021459           11 PYRHFKTLTAHSRA--VSCVKFSNDGTLLASASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDD   85 (312)
Q Consensus        11 ~~~~~~~~~~h~~~--v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d   85 (312)
                      .++..+++ .|...  ...|.|+ ++.+..+.+.+|  .|+++|+.+++.+.++.... ........++++.|... -.+
T Consensus        30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred             ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeC
Confidence            35555555 55443  4789998 677777777766  89999999999888776433 33232233345455444 458


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--CcC---eEEEEEccC
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SMP---VTSVHFNRD  160 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~---v~~~~~~~~  160 (312)
                      +.+.+||..+. +.+.++..... -  ..+.++++.|+.+..++.|.++|..+.+....+...  ..+   ++.+.|. +
T Consensus       107 ~~v~v~D~~t~-~~~~ti~~~~e-G--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          107 GLGFVWNIRNL-RQVRSFNYDGE-G--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             SEEEEEETTTC-CEEEEEECSSC-C--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECccC-cEEEEEECCCC-c--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            89999999874 44555543221 1  223356777777766788999999998877766542  222   4457776 7


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcccC-----------CCCcEEEEEECCCCCEEEEEec
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDD-----------KDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      |+.++..-.++.|.+.|..+++.+..+...           .......++++|+++.|.+.+.
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            877776667889999999999887665321           1234577889998887776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=3.1e-07  Score=83.01  Aligned_cols=240  Identities=15%  Similarity=0.174  Sum_probs=148.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccC-CEEEEEEcc--CCCeEEEEcC------CCeEEEEeCCCCceeeeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSE-GISDLAWSS--DSHYICSASD------DRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~  104 (312)
                      +..|+.++.|+.+..+|..+++.+.+...... ....+.-.|  .+..++++..      ++.|..+|..++...-....
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45677888899999999999998877654211 000011111  1334555432      58899999988644322110


Q ss_pred             --cc----------------------------cccEEEEEEecCCCEEEEeecCC-------------------cEEEEE
Q 021459          105 --GH----------------------------SDFVFCVNFNPQSNLIVSGSFDE-------------------SIRIWE  135 (312)
Q Consensus       105 --~~----------------------------~~~v~~~~~~~~~~~l~s~~~dg-------------------~i~~wd  135 (312)
                        +.                            ......++++|+.+.++.+..++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence              00                            00112467888888888887665                   389999


Q ss_pred             cCCCeEEEEeee--cC-------cCeEEEEEccCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCC-----------C
Q 021459          136 VKTGKCTRVIRA--HS-------MPVTSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDK-----------D  192 (312)
Q Consensus       136 ~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~  192 (312)
                      .++|+.+-.++.  |.       .+.....+..+|+   .++.++.+|.+.++|..+++.+.......           .
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            999998776654  21       2222233334665   68899999999999999988763221110           0


Q ss_pred             Cc------------------------EEEEEECCCCCEEEEEe------------------------------------c
Q 021459          193 PA------------------------VSFAKFSPNGKFILVGT------------------------------------L  212 (312)
Q Consensus       193 ~~------------------------~~~~~~~~~~~~l~~~~------------------------------------~  212 (312)
                      ..                        -..++++|+...+.+..                                    .
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            00                        00135666666555421                                    2


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG  277 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  277 (312)
                      +|.|.-||..+++.+-...........   ... ..+.+++.++.||.++.||..+++.+..++.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~---~~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGG---TLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCC---EEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCc---eeE-eCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            378999999999877655433221110   111 2467888899999999999999988776653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.07  E-value=6.2e-07  Score=70.75  Aligned_cols=197  Identities=11%  Similarity=0.015  Sum_probs=127.5

Q ss_pred             EEEEEEccCCCeEEEEcC--CCeEEEEeCCCCceeeeeeec-ccccEEEEEEecCCCEEEEe-ecCCcEEEEEcCCCeEE
Q 021459           67 ISDLAWSSDSHYICSASD--DRTLRIWDARTPFDCLKTLRG-HSDFVFCVNFNPQSNLIVSG-SFDESIRIWEVKTGKCT  142 (312)
Q Consensus        67 v~~~~~~~~~~~l~~~~~--d~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~  142 (312)
                      ...+.|++++.+.++.+.  ++.|.++|+.++. .+..+.- .......+++.  ++.++.. -.++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-EEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-EEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            578999998755444443  5799999998863 4444321 11122334444  4455544 45688999999999888


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC----CcEEEEEECCCCCEEEEEecCCeEEE
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD----PAVSFAKFSPNGKFILVGTLDSTLKL  218 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~v  218 (312)
                      ..+... .+ ....+++|++.++++..++.+.++|..+.+....+.-...    .....+.+. ++...+....++.|.+
T Consensus       100 ~~i~~g-~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQ-MK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECC-SS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECC-CC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            877543 11 1234566887777777788999999998877766543211    123344555 6655555556789999


Q ss_pred             EEcCCCcEEEEEEccC-----------CceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          219 WNYSAGKFLKIYTGHT-----------NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       219 ~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .|..+++.+..+....           .........+.+...++++++...+.|...++...
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999888776321           00122333455445568888989999999988543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=7.3e-08  Score=79.14  Aligned_cols=218  Identities=16%  Similarity=0.090  Sum_probs=136.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      +..|..++.++.+..++.. ++...........+.++...+++. +..++.++.+..+|.. +. ...........+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-EeEEEecCCCceeee
Confidence            4556677788999999988 776666655555566777777776 5557778999999987 43 233333334455666


Q ss_pred             EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC
Q 021459          114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP  193 (312)
Q Consensus       114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (312)
                      ...+++...+..   +.|..+| .+++...........+.++...+++. +..++.++.+..+|. ++.....+... ..
T Consensus       183 ~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~  255 (330)
T 3hxj_A          183 SIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG-KR  255 (330)
T ss_dssp             EECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS-SC
T ss_pred             EEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC-CC
Confidence            677777755544   7799999 67766655554455677888888775 455667778888875 44444333222 12


Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      ........+++ .|.+++.++.|..+|. +++.+..+.........   .....++ .|..++.+|.+++.....
T Consensus       256 ~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~---~~~d~~g-~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          256 IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIAT---PVIDENG-TIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSC---CEECTTC-CEEEECTTSCEEEEEC--
T ss_pred             ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccc---eEEcCCC-EEEEEcCCCeEEEEeccc
Confidence            12223345555 5667788889999995 66665555433222111   1222344 466688999999887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=1.3e-07  Score=73.89  Aligned_cols=188  Identities=13%  Similarity=0.110  Sum_probs=125.1

Q ss_pred             eceeeeccccc--ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE--EEEEccCCCeEE-EEcCCCe
Q 021459           13 RHFKTLTAHSR--AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS--DLAWSSDSHYIC-SASDDRT   87 (312)
Q Consensus        13 ~~~~~~~~h~~--~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~-~~~~d~~   87 (312)
                      +..+++ .|..  -...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ -. ....  .+++  +++.|. ..-.++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--DGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--CSSCEEEEESSSCE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--eCCEEEEEEccCCE
Confidence            333444 4443  34688887 3667777888899999999999887776 22 2332  3444  444343 3446889


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee--cCc---CeEEEEEccCCC
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA--HSM---PVTSVHFNRDGS  162 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~  162 (312)
                      +.+||..+. +.+.++.... .-..++  ++++.|+.+..++.|.++|..+.+.+..+..  +..   .++.+.|. +|+
T Consensus       118 v~V~D~~Tl-~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          118 LFTWSGMPP-QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEEEETTTT-EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECCcC-cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            999999874 5555554322 112333  5677777777788999999999888776653  222   34667776 777


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcccC------------CCCcEEEEEECCCCCEEEEEe
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLIDD------------KDPAVSFAKFSPNGKFILVGT  211 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~  211 (312)
                      .++..-.++.|.+.|..+++.+..+...            .......++++|+++.|.+.+
T Consensus       193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            7766667889999999999877655321            223567789999776555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.03  E-value=3.1e-08  Score=89.49  Aligned_cols=270  Identities=9%  Similarity=0.064  Sum_probs=148.0

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEeCCCcceE--EEeee-ccCCEEEEEEccCCCeEEEEcC-CCeEEE
Q 021459           27 CVKFSN-DGTLLASASLDK-----------TVIIWSASSLALV--HRFVG-HSEGISDLAWSSDSHYICSASD-DRTLRI   90 (312)
Q Consensus        27 ~~~~s~-~~~~l~t~~~d~-----------~i~vw~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~v~~   90 (312)
                      ..++.| ++++++.|+.+.           .+.+||..+.+..  ..... +.....++++..+++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456667 888888887543           5788998776432  22211 2222335677889999999884 458999


Q ss_pred             EeCCCCce-eeeeeecccccEEEEEEecCCCEEEEee-cC-----CcEEEEEcCCCeEEEEe----eecCcCeEEEEEcc
Q 021459           91 WDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGS-FD-----ESIRIWEVKTGKCTRVI----RAHSMPVTSVHFNR  159 (312)
Q Consensus        91 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d-----g~i~~wd~~~~~~~~~~----~~~~~~v~~~~~~~  159 (312)
                      ||..+..- .+..+.. ...-.++...++++.++.|+ .+     ..+.+||..+++-...-    ......-....+..
T Consensus       270 yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99865321 1111111 11123445567899999988 34     46899999887643320    00000000011223


Q ss_pred             CCCEEEEeeCC---------CeEEEEeCCCCceeeEcccCC--------CCcEEEEEEC-CCCCEEEEEecCC-------
Q 021459          160 DGSLIVSGSHD---------GTCKIWDAGEGACLKTLIDDK--------DPAVSFAKFS-PNGKFILVGTLDS-------  214 (312)
Q Consensus       160 ~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~l~~~~~d~-------  214 (312)
                      ++..++.|+.+         ..+..||..+...........        ......+.++ .+++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            44555555444         356788887665332211100        0112223333 4778888887542       


Q ss_pred             ----eEEEEEcCCCcEEEEE--EccCCceeEEEEEEEccCCcEEEEeecC-----------CeEEEEECCchhe--eecc
Q 021459          215 ----TLKLWNYSAGKFLKIY--TGHTNKKYCITSTFSVTNGKYIVSGSED-----------NCVYVWDLQQKTM--IQKL  275 (312)
Q Consensus       215 ----~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~  275 (312)
                          .|.+||..+.......  ........  ......+++++++.|+.+           ..+.+||..+.+-  +..+
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~--~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTF--HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBS--CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCccc--CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence                6778887776655432  11111111  112233688999998864           5689999865432  2222


Q ss_pred             cCCccceEEEEEcCCCceEEEeee
Q 021459          276 DGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       276 ~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      ........+..+.|+++.++.||.
T Consensus       507 ~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          507 SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCccccccHhhcCCCcEEEecCCC
Confidence            222222234456789999998884

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=2.3e-07  Score=83.76  Aligned_cols=192  Identities=14%  Similarity=0.133  Sum_probs=121.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC----------E-EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG----------I-SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~  102 (312)
                      +..|+.++.++.|.-+|..+++.+.++......          + ..+++  .+..++.++.|+.|..+|..++...-+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            556777778899999999999988776532210          0 11222  3557788888999999999887543322


Q ss_pred             eeccc---ccEE-EEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecC-c---------------------
Q 021459          103 LRGHS---DFVF-CVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHS-M---------------------  150 (312)
Q Consensus       103 ~~~~~---~~v~-~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~-~---------------------  150 (312)
                      .....   ..+. ....  .+..++.+..      +|.|..+|.++|+.+-.+.... .                     
T Consensus       144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            21110   0111 0111  1345555543      5889999999998876654210 0                     


Q ss_pred             ---------CeEEEEEccCCCEEEEeeCCC-------------------eEEEEeCCCCceeeEcccC-CC-------Cc
Q 021459          151 ---------PVTSVHFNRDGSLIVSGSHDG-------------------TCKIWDAGEGACLKTLIDD-KD-------PA  194 (312)
Q Consensus       151 ---------~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~-~~-------~~  194 (312)
                               ....+++.|+..+++.++.++                   .|..+|..+++..-.+... ++       ..
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                     012367888778888887765                   3899999999876554322 11       12


Q ss_pred             EEEEEECCCCC---EEEEEecCCeEEEEEcCCCcEEEE
Q 021459          195 VSFAKFSPNGK---FILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       195 ~~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                      .....+..+|+   .++.++.+|.++++|..+|+.+..
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence            22222334665   688899999999999999998743

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.02  E-value=1e-06  Score=68.21  Aligned_cols=194  Identities=11%  Similarity=0.051  Sum_probs=127.2

Q ss_pred             ceeceeeecccc--cceEEEEECCCCCEEEEEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCC
Q 021459           11 PYRHFKTLTAHS--RAVSCVKFSNDGTLLASASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDD   85 (312)
Q Consensus        11 ~~~~~~~~~~h~--~~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d   85 (312)
                      .++..+++ .|.  .-...|.|++ +.+..+.+.+|  .|+++|+.+++.+..+..... .......+.++.|. ..-.+
T Consensus         8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X            8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSS
T ss_pred             ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeC
Confidence            45555665 564  4566899987 56666666654  899999999998877654322 22222222344444 34568


Q ss_pred             CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--C---cCeEEEEEccC
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--S---MPVTSVHFNRD  160 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~---~~v~~~~~~~~  160 (312)
                      +.+.+||..+. +.+.++.... .-..++  +++..|+.+..++.|.++|..+.+.+..++..  .   ..++.+.+. +
T Consensus        85 ~~v~v~D~~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           85 HEGFVYDLATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             SEEEEEETTTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence            89999999874 5555554322 223343  56666666667889999999998877766542  2   234566665 7


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcccC------------CCCcEEEEEECCCCCEEEEEec
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDD------------KDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      |+.++..-.+..|.+.|..+++.+..+...            .......++++|+++.|.+.+.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            777766667889999999999887665311            2235677889998776666553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.01  E-value=2.6e-07  Score=72.15  Aligned_cols=182  Identities=12%  Similarity=0.153  Sum_probs=123.0

Q ss_pred             cEEEEEEecCCCEEEEeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCCeEEEEeCCCCceee
Q 021459          109 FVFCVNFNPQSNLIVSGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLK  185 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~  185 (312)
                      ....+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ........+++..+. +.-.++.+.++|..+.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            45678888 566667777765  89999999999887775433 233322333344444 44468899999999998888


Q ss_pred             EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc-e-eEE-EEEEEccCCcEEEEeecCCeEE
Q 021459          186 TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK-K-YCI-TSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                      ++.....+ .   .++++++.|+.+..++.|.++|..+.+.+..+...... . ..+ ...+  .++++.+..-.++.|.
T Consensus       122 ti~~~~eG-~---glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~~~~I~  195 (262)
T 3nol_A          122 SFNYDGEG-W---GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEECSSCC-C---CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTSSEEE
T ss_pred             EEECCCCc-e---EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--ECCEEEEEEccCCeEE
Confidence            77543322 1   23356777777766889999999988887776543211 1 111 1122  2677777776788999


Q ss_pred             EEECCchheeecccCC------------ccceEEEEEcCCCceEEEee
Q 021459          263 VWDLQQKTMIQKLDGH------------TDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       263 iwd~~~~~~~~~~~~h------------~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +.|..+++.+..+.-.            .+..+.||++|+++.|..+|
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            9999998876654321            23569999999988887776

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.99  E-value=2.8e-06  Score=69.11  Aligned_cols=209  Identities=10%  Similarity=0.076  Sum_probs=120.3

Q ss_pred             CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-C-e
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-R-T   87 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-~   87 (312)
                      .+.+....+... .....++|+|+++++++-..++.|..++.... ....+ .....+..+++.++++++++.... + .
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcce
Confidence            344445555332 55778999999997777767899999987653 32222 234567899999999866554332 2 4


Q ss_pred             EEEEeCCCCcee-eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEee---------ecCcCeEEEE
Q 021459           88 LRIWDARTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIR---------AHSMPVTSVH  156 (312)
Q Consensus        88 v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~---------~~~~~v~~~~  156 (312)
                      |..+|..++... +.... .......++..+++..+++-..++.|.++|...++. +....         ..-.....+ 
T Consensus        97 v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EEEEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            666676554211 11111 112223344445544455544578899999876532 11100         001123445 


Q ss_pred             EccCCCEEE-EeeCCCeEEEEeCCC-Cce--eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE
Q 021459          157 FNRDGSLIV-SGSHDGTCKIWDAGE-GAC--LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL  227 (312)
Q Consensus       157 ~~~~~~~l~-~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  227 (312)
                       +|+++.+. +-...+.|..+++.. +..  ...+.. . .....++++++|+++++....+.|.++|.. ++..
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~  245 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT  245 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence             77876554 455677899999864 321  111111 0 112335688999887777777899999864 5543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.98  E-value=1.4e-07  Score=82.06  Aligned_cols=216  Identities=13%  Similarity=0.165  Sum_probs=137.6

Q ss_pred             CCCeEEEEcC-CCeEEEEeCCCCceeeeeeec-ccccEEEEEE-e-cCCCEEEEee------------------cCCcEE
Q 021459           75 DSHYICSASD-DRTLRIWDARTPFDCLKTLRG-HSDFVFCVNF-N-PQSNLIVSGS------------------FDESIR  132 (312)
Q Consensus        75 ~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~dg~i~  132 (312)
                      ||++|+.... +..|.+.|+.+. ++.+.+.- .......+++ . |+++++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            7887777654 457999999874 44442221 1133567776 4 8999988884                  245789


Q ss_pred             EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC--------------------------------------eEE
Q 021459          133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG--------------------------------------TCK  174 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~  174 (312)
                      +.|..+.+....+.... ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988777766433 346778999999988887553                                      255


Q ss_pred             EEeCCC--Cce-eeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCc------------EEEEEEccCCcee
Q 021459          175 IWDAGE--GAC-LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGK------------FLKIYTGHTNKKY  238 (312)
Q Consensus       175 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~------------~~~~~~~~~~~~~  238 (312)
                      +.|.++  +.. +..+....  ....+.++|||+++++++ .+.+|.++|+.+.+            ..........   
T Consensus       258 VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g---  332 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG---  332 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC---
T ss_pred             EEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC---
Confidence            666665  323 22222111  123467999999887764 67899999998542            2222221112   


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCc----------hheeecccCCccce-----EEEEEcCCCceEEEee
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQ----------KTMIQKLDGHTDSV-----ISVTCHPTENKIASAG  298 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~l~~~p~~~~l~~~~  298 (312)
                      .....|. ++|...++.--|+.|..||+..          .+.+.++..|-.+-     ..++.+|||++|+++.
T Consensus       333 P~h~aF~-~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          333 PLHTAFD-GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEEEEC-TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cceEEEC-CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            2333444 5676667788899999999876          34555665554321     1224579999888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.97  E-value=2.3e-05  Score=72.39  Aligned_cols=276  Identities=9%  Similarity=0.153  Sum_probs=163.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-------ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-------HSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ...|.++...+++.+.+....+| +.+|+..+.+.......       ....|.++...++|.+.+. ..+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence            45688888888777655443344 78888776544322111       1356899999888876654 444 58888876


Q ss_pred             CCceeeeeee--------cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee------ecCcCeEEEEEccC
Q 021459           95 TPFDCLKTLR--------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR------AHSMPVTSVHFNRD  160 (312)
Q Consensus        95 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~~~~  160 (312)
                      +..  ...+.        -....|.++...+++++ ..|+.++-|..|+..+++......      .....|.++...++
T Consensus       291 ~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~  367 (795)
T 4a2l_A          291 TDS--FASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD  367 (795)
T ss_dssp             TTE--EEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred             CCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence            542  11111        12356889988888764 456666778889876554222111      02345889988888


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcccC-------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDD-------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH  233 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  233 (312)
                      |.+. .|+.++-+..||..++....-....       ....+..+..++++..|.+|+.++-|..||..+++........
T Consensus       368 g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~  446 (795)
T 4a2l_A          368 KNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN  446 (795)
T ss_dssp             SCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred             CCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence            8754 5777777899998766543221111       1234667777788875667787788999998877643322110


Q ss_pred             C-CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc------CCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          234 T-NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD------GHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      . .....+.......++.+.+. +.+| +..||..+++......      -....|.++...+++...+... +|   |.
T Consensus       447 ~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G---l~  520 (795)
T 4a2l_A          447 SQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG---LS  520 (795)
T ss_dssp             SCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC---EE
T ss_pred             CCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc---eE
Confidence            0 01112233333345665543 4455 8889987654322111      1235788998888886655433 33   55


Q ss_pred             EEee
Q 021459          307 VWVQ  310 (312)
Q Consensus       307 iw~~  310 (312)
                      .|+.
T Consensus       521 ~~~~  524 (795)
T 4a2l_A          521 VFKQ  524 (795)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            5543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=2.2e-07  Score=72.52  Aligned_cols=181  Identities=10%  Similarity=0.056  Sum_probs=123.0

Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE--EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT--SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT  186 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (312)
                      ....+.|+. +.++.+.+.+|.|+++|+++++.+..+ ... ...  .+++.. +++.++.-.++.+.++|..+.+.+.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            456777774 566777788889999999999887766 332 233  345443 34445555788999999999998887


Q ss_pred             cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce--eEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459          187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK--YCITSTFSVTNGKYIVSGSEDNCVYVW  264 (312)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iw  264 (312)
                      +...... .   .+.++++.|+.+..++.|.++|..+.+.+..+.......  ..+.-.-. .++++.+..-.++.|.+.
T Consensus       132 i~~~~eG-w---GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          132 TRYSGEG-W---GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-ANGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EECSSCC-C---CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTCSEEEEE
T ss_pred             EeCCCce-e---EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-eCCEEEEEECCCCeEEEE
Confidence            7543322 1   233567888888778999999999988877765432211  11111111 267777766678899999


Q ss_pred             ECCchheeecccC-------------CccceEEEEEcCCCceEEEee
Q 021459          265 DLQQKTMIQKLDG-------------HTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       265 d~~~~~~~~~~~~-------------h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      |..+++.+..+.-             -.+-.+.||++|+++.|...|
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9998877655432             123578999999887777665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=1.1e-06  Score=67.90  Aligned_cols=184  Identities=9%  Similarity=0.025  Sum_probs=122.3

Q ss_pred             ccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459          108 DFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL  184 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (312)
                      .....+.|++ +.++.+.+..  +.|+.+|+.+++.+......... --.+++. ++++....-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4566788886 4555666654  48999999999988776543322 1233443 2344455557889999999999888


Q ss_pred             eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc--eeEEEEEEEccCCcEEEEeecCCeEE
Q 021459          185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK--KYCITSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                      .++.....+ .   .+.++++.|.++..++.|.++|..+.+.+..+......  ...+.-.- ..++++.+..-.+..|.
T Consensus        99 ~ti~~~~~G-w---glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe-~~~G~lyanvw~s~~I~  173 (243)
T 3mbr_X           99 ARFRYPGEG-W---ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE-WVNGELLANVWLTSRIA  173 (243)
T ss_dssp             EEEECSSCC-C---EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EETTEEEEEETTTTEEE
T ss_pred             EEEeCCCCc-e---EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE-EeCCEEEEEECCCCeEE
Confidence            877544322 2   23356777777777899999999998887776543211  11111111 13677777666788999


Q ss_pred             EEECCchheeecccC-------------CccceEEEEEcCCCceEEEee
Q 021459          263 VWDLQQKTMIQKLDG-------------HTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       263 iwd~~~~~~~~~~~~-------------h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      +.|..+++.+..+.-             -.+-.+.+|++|+++.|...|
T Consensus       174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            999998877655431             123578999999888777665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.95  E-value=2.3e-05  Score=72.42  Aligned_cols=265  Identities=12%  Similarity=0.152  Sum_probs=157.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      |.++...+++.+.+ +..++-+..|+..+.+..... ......|.++...+++.+.+. ..++-+..||..+..  ...+
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~--~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKE--IKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTE--EEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCe--EEEe
Confidence            88888888887655 455445788887765543221 123456888888888876654 444348889876532  1111


Q ss_pred             ec--------ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-------cCcCeEEEEEccCCCEEEEee
Q 021459          104 RG--------HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-------HSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       104 ~~--------~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ..        ....|.++...+++++.+ |+.+ -|.+||..+++.......       ....|.++...++|.+. .|+
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt  327 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGT  327 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEE
T ss_pred             ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEE
Confidence            11        135688998888877554 4445 488999887764432211       23468999999888754 566


Q ss_pred             CCCeEEEEeCCCCceeeEccc-----CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-----CCcee
Q 021459          169 HDGTCKIWDAGEGACLKTLID-----DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-----TNKKY  238 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~~~  238 (312)
                      .++-+..++..++....-...     -....+..+..+++|. |-+|+.++-|..||..++.........     .-...
T Consensus       328 ~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~  406 (795)
T 4a2l_A          328 YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSN  406 (795)
T ss_dssp             SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCS
T ss_pred             CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCc
Confidence            777788888765432211110     0123467777788776 445777778999998776544322111     00011


Q ss_pred             EEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc----CCccceEEEEEcCCCceEEEe
Q 021459          239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD----GHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      .+.......++..|-.|+.++-|..+|..+++......    .....|.++...+++...+..
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            23333333566645567776779999987654322111    134578999888877655433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=4.7e-06  Score=66.29  Aligned_cols=203  Identities=6%  Similarity=-0.032  Sum_probs=124.3

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceee
Q 021459           23 RAVSCVKFSNDGTLLAS-ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~  100 (312)
                      .....++++|+++.|.. -..++.|.+++.........+.........+++++++..|+ +-...+.|.++++...... 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-
Confidence            45678999997665554 44568999999876544322222224678999999765555 4455678999988643211 


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeec---CCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEE-EEeeCCCeEEE
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSF---DESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLI-VSGSHDGTCKI  175 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i  175 (312)
                      .........-..++++|++..++.+..   .+.|..+++.... ...+. ........++++|++..| ++-...+.|..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            111111234578899997666555544   3678888876432 22222 222346789999976655 45556688999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEE
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      +|....... .+...... ...++..  +..|.++ ...+.|..+|..+++.+..+.
T Consensus       194 ~~~~g~~~~-~~~~~~~~-P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          194 LNPAQPGRR-KVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EETTEEEEE-EEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCCceE-EEecCCCC-ceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            998754322 22222222 2333443  4455544 456899999998888777664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=1.4e-06  Score=77.07  Aligned_cols=257  Identities=12%  Similarity=0.075  Sum_probs=152.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeecc--C--CEEE-EEEccCCCeEEEEcC------CCeEEEEeCCCCceeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHS--E--GISD-LAWSSDSHYICSASD------DRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~--~--~v~~-~~~~~~~~~l~~~~~------d~~v~~wd~~~~~~~~~~  102 (312)
                      +..++.++.|+.+..+|..+++.+.+.....  .  .+.+ ...  .+..+++++.      ++.|..+|..++...-+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5567778889999999999999887654321  0  1211 111  1335555544      789999999886543221


Q ss_pred             eecccc------------------------------------cE-EEEEEecCCCEEEEeecC----------------C
Q 021459          103 LRGHSD------------------------------------FV-FCVNFNPQSNLIVSGSFD----------------E  129 (312)
Q Consensus       103 ~~~~~~------------------------------------~v-~~~~~~~~~~~l~s~~~d----------------g  129 (312)
                      ......                                    .+ ..+++.++...++.+..+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            111000                                    00 135567766676665532                3


Q ss_pred             cEEEEEcCCCeEEEEeeecC----------cCeEEEEEccCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCC-----
Q 021459          130 SIRIWEVKTGKCTRVIRAHS----------MPVTSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDK-----  191 (312)
Q Consensus       130 ~i~~wd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----  191 (312)
                      .|..+|.++++.+-.++...          .++. +...++|+   .++.++.+|.+.++|..+++.+-......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            58899999998876665321          2221 22234674   57788899999999999988765432111     


Q ss_pred             -------CCcE--------------------------EEEEECCCCCEEEEEe---------------------------
Q 021459          192 -------DPAV--------------------------SFAKFSPNGKFILVGT---------------------------  211 (312)
Q Consensus       192 -------~~~~--------------------------~~~~~~~~~~~l~~~~---------------------------  211 (312)
                             ...+                          ..++++|+...+.+..                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                   0000                          1235677767666653                           


Q ss_pred             ----------cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCcc-
Q 021459          212 ----------LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD-  280 (312)
Q Consensus       212 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-  280 (312)
                                .++.|..||..+++.+..+........ .  ... ..+..++.++.||.|+.+|..+++.+-+++.... 
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~-~--~~~-t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  507 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG-G--TLY-TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS-B--CEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc-e--eEE-ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence                      347899999999987766543221110 0  011 2355677799999999999999988766653221 


Q ss_pred             ceEEEEEcCCCceEEEe
Q 021459          281 SVISVTCHPTENKIASA  297 (312)
Q Consensus       281 ~v~~l~~~p~~~~l~~~  297 (312)
                      ...-+.+.+++..++..
T Consensus       508 ~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          508 IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             EeeeEEEEECCEEEEEE
Confidence            11223355677655543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=4.1e-07  Score=79.17  Aligned_cols=233  Identities=14%  Similarity=0.087  Sum_probs=146.6

Q ss_pred             CCCCEEEEEeC-CCeEEEEeCCCcceEEEeeec-cCCEEEEEE-c-cCCCeEEEEc------------------CCCeEE
Q 021459           32 NDGTLLASASL-DKTVIIWSASSLALVHRFVGH-SEGISDLAW-S-SDSHYICSAS------------------DDRTLR   89 (312)
Q Consensus        32 ~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~d~~v~   89 (312)
                      +||+++..... +..|.+-|+.+.+....+.-. ......+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48888776654 567999999999876644322 345788888 5 8999998884                  235788


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC--------------------------------------cE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE--------------------------------------SI  131 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------------------------------------~i  131 (312)
                      +.|..+. +...++.--. .-.-++++|+++++++.+.+.                                      .|
T Consensus       179 vID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            8888864 4444433111 223466889999888877543                                      36


Q ss_pred             EEEEcCC--CeE-EEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCc------------eeeEcccCCCCcE
Q 021459          132 RIWEVKT--GKC-TRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGA------------CLKTLIDDKDPAV  195 (312)
Q Consensus       132 ~~wd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~------------~~~~~~~~~~~~~  195 (312)
                      .+.|.++  ++. +..+... ....++.++|||+++++++ .+.+|.++|+.+.+            ...++.  .+...
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCE
T ss_pred             EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCc
Confidence            6667666  333 3333322 2346789999999776554 67899999998642            122221  22335


Q ss_pred             EEEEECCCCCEEEEEecCCeEEEEEcCC----------CcEEEEEEccCCceeEEEE--EEEccCCcEEEEeec---CCe
Q 021459          196 SFAKFSPNGKFILVGTLDSTLKLWNYSA----------GKFLKIYTGHTNKKYCITS--TFSVTNGKYIVSGSE---DNC  260 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~---dg~  260 (312)
                      ..++|+|+|...++.-.|++|.+||+..          ...+..+..+.........  ....++|++|++...   |..
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            5678999995445567799999999876          4455555554432111100  011367888887643   432


Q ss_pred             E----------EEEECCch
Q 021459          261 V----------YVWDLQQK  269 (312)
Q Consensus       261 i----------~iwd~~~~  269 (312)
                      +          .++|+..+
T Consensus       414 ~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSS
T ss_pred             ccCCCCCCCcceEEEcCCC
Confidence            1          77888543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.89  E-value=2.9e-06  Score=75.29  Aligned_cols=252  Identities=16%  Similarity=0.155  Sum_probs=148.3

Q ss_pred             EEEEeCCCeEEEEeCCCcceEEEeeecc----CCEEE-EEEccCCCeEEEEc------CCCeEEEEeCCCCceeeeeeec
Q 021459           37 LASASLDKTVIIWSASSLALVHRFVGHS----EGISD-LAWSSDSHYICSAS------DDRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        37 l~t~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~------~d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      |+.++.|+.+..+|..+++.+.+.....    ..+.+ ... .++ .+++++      .++.|+.+|..++...-+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7888889999999999999887654321    01211 111 134 455554      3789999999887543221111


Q ss_pred             ccc------------------------------------cE-EEEEEecCCCEEEEeecC----------------CcEE
Q 021459          106 HSD------------------------------------FV-FCVNFNPQSNLIVSGSFD----------------ESIR  132 (312)
Q Consensus       106 ~~~------------------------------------~v-~~~~~~~~~~~l~s~~~d----------------g~i~  132 (312)
                      ...                                    .+ ..+++.++...++.+..+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            100                                    01 134566777777776654                3789


Q ss_pred             EEEcCCCeEEEEeeecCc----------CeEEEEEc-cCC---CEEEEeeCCCeEEEEeCCCCceeeEcccCC-------
Q 021459          133 IWEVKTGKCTRVIRAHSM----------PVTSVHFN-RDG---SLIVSGSHDGTCKIWDAGEGACLKTLIDDK-------  191 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  191 (312)
                      -+|.++|+..-.++....          ++. +... .+|   ..++.++.+|.+.++|..+++.+-......       
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            999999998766654221          121 2222 467   467778999999999999988765432110       


Q ss_pred             -----CCcE--------------------------EEEEECCCCCEEEEEe-----------------------------
Q 021459          192 -----DPAV--------------------------SFAKFSPNGKFILVGT-----------------------------  211 (312)
Q Consensus       192 -----~~~~--------------------------~~~~~~~~~~~l~~~~-----------------------------  211 (312)
                           ...+                          ..++++|+..++.+..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                 0000                          1234556555544321                             


Q ss_pred             ----------cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCcc-
Q 021459          212 ----------LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD-  280 (312)
Q Consensus       212 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-  280 (312)
                                ..|.|.-||+.+++.+-...........   .. ...+.+++.++.||.++.||.++++.+-+++-... 
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g---~~-~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~  516 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG---TM-ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB---CE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc---ce-EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence                      3467888999888876554322111000   01 12356777799999999999999988766542221 


Q ss_pred             ceEEEEEcCCCceEE
Q 021459          281 SVISVTCHPTENKIA  295 (312)
Q Consensus       281 ~v~~l~~~p~~~~l~  295 (312)
                      ...-+.+..+|++++
T Consensus       517 ~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          517 IGYPMTYTHKGTQYV  531 (599)
T ss_dssp             CSCCEEEEETTEEEE
T ss_pred             EeccEEEEeCCEEEE
Confidence            112234556776544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.86  E-value=1.9e-05  Score=64.14  Aligned_cols=225  Identities=12%  Similarity=0.047  Sum_probs=131.7

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC--cEEEEEcCCCeEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE--SIRIWEVKTGKCT  142 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~  142 (312)
                      .....++|+++++++++-..++.|..||.....  ..... .......+++.++++++++.....  .|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            346789999999877776678899999876532  22221 234577899999998666554332  4667787777654


Q ss_pred             EEeeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-ee-E-------cccCCCCcEEEEEECCCCCEEEEE-e
Q 021459          143 RVIRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LK-T-------LIDDKDPAVSFAKFSPNGKFILVG-T  211 (312)
Q Consensus       143 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~l~~~-~  211 (312)
                      ...... ......++..+++..+++-..++.|..+|..++.. +. .       ...........+  +++++.|.++ .
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            332211 12234455555555555555688899999765421 11 0       000111122223  7788766555 5


Q ss_pred             cCCeEEEEEcCC-CcE--EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe--eecccCCccceEEEE
Q 021459          212 LDSTLKLWNYSA-GKF--LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM--IQKLDGHTDSVISVT  286 (312)
Q Consensus       212 ~d~~i~v~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~  286 (312)
                      ..+.|..||+.. ++.  ...+.... ....+   ...++|.+.++....+.|.++|.. ++.  +..+........+++
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~~~-~P~gi---~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a  261 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVEQT-NIDDF---AFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  261 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESC-CCSSE---EEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEeccC-CCCCe---EECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence            578999999864 321  11221110 11112   123568888887778899999975 433  223333335689999


Q ss_pred             Ec---CCCceEEEeee
Q 021459          287 CH---PTENKIASAGL  299 (312)
Q Consensus       287 ~~---p~~~~l~~~~~  299 (312)
                      |.   |+++.|..++.
T Consensus       262 ~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          262 FGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ECCSTTTTTEEEEEEC
T ss_pred             EecccCCCCEEEEECC
Confidence            98   88777666554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.86  E-value=8.2e-06  Score=72.36  Aligned_cols=258  Identities=14%  Similarity=0.126  Sum_probs=151.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccC----CEE-EEEEcc---CCC-eEEEEc------CCCeEEEEeCCCCce
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSE----GIS-DLAWSS---DSH-YICSAS------DDRTLRIWDARTPFD   98 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~~~~------~d~~v~~wd~~~~~~   98 (312)
                      +..|+.++.|+.+..+|..+++.+.+......    .+. +.....   +++ .+++++      .++.|..+|..++..
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788899999999999998876653221    111 111111   233 565654      378899999887643


Q ss_pred             eeeeeeccc----------------------------------------c-cEEEEEEecCCCEEEEeec----------
Q 021459           99 CLKTLRGHS----------------------------------------D-FVFCVNFNPQSNLIVSGSF----------  127 (312)
Q Consensus        99 ~~~~~~~~~----------------------------------------~-~v~~~~~~~~~~~l~s~~~----------  127 (312)
                      .-.. ....                                        . .-..++++|+...++.+..          
T Consensus       197 ~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWMR-PFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEE-ESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             Eeec-CCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            3211 1000                                        0 0013456777777776552          


Q ss_pred             ----------C----CcEEEEEcCCCeEEEEeee--cC--------cCeEEEEEc-cCCC---EEEEeeCCCeEEEEeCC
Q 021459          128 ----------D----ESIRIWEVKTGKCTRVIRA--HS--------MPVTSVHFN-RDGS---LIVSGSHDGTCKIWDAG  179 (312)
Q Consensus       128 ----------d----g~i~~wd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~iwd~~  179 (312)
                                |    +.|.-+|.++|+..-.++.  |.        .++. +... .+|+   .++.++.+|.+.++|..
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence                      2    5799999999998776653  21        1221 1221 4664   78889999999999999


Q ss_pred             CCceeeEcccCC------------CC--------------------cE------------EEEEECCCCCEEEEEe----
Q 021459          180 EGACLKTLIDDK------------DP--------------------AV------------SFAKFSPNGKFILVGT----  211 (312)
Q Consensus       180 ~~~~~~~~~~~~------------~~--------------------~~------------~~~~~~~~~~~l~~~~----  211 (312)
                      +++.+-......            ..                    ..            ..++++|+...+.+..    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            888764432211            00                    00            0134566555444432    


Q ss_pred             -----------------------------cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEE
Q 021459          212 -----------------------------LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY  262 (312)
Q Consensus       212 -----------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  262 (312)
                                                   .+|.|.-||+.+++.+-...........   ... ..+.+++.|+.||.++
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g---~~~-tagglvf~g~~dg~l~  510 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG---VLA-TAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC---CEE-ETTTEEEEECTTSEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc---ceE-eCCCEEEEECCCCcEE
Confidence                                         2578999999999876554432211100   011 2356777899999999


Q ss_pred             EEECCchheeecccCCccc-eEEEEEcCCCceEEEe
Q 021459          263 VWDLQQKTMIQKLDGHTDS-VISVTCHPTENKIASA  297 (312)
Q Consensus       263 iwd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~~~  297 (312)
                      .||.++++.+-+++..... ..-+.+..+++++++.
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            9999999888766543221 1124566777655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.83  E-value=2.9e-05  Score=64.31  Aligned_cols=244  Identities=6%  Similarity=-0.067  Sum_probs=141.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCcee
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDC   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~   99 (312)
                      +.+..+|.+..++. +|+.+. ...|+..+.........+. ....+..++|++.+..|+.+ ...+.|..+++..... 
T Consensus        32 ~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-  107 (349)
T 3v64_C           32 RPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-  107 (349)
T ss_dssp             CTTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-
Confidence            34455676666644 444333 3457777776654433332 33457899999866655544 4567888888865421 


Q ss_pred             eeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE-EEEeeCC-CeEEEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL-IVSGSHD-GTCKIW  176 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d-~~i~iw  176 (312)
                      .............+++++.+. ++++-...+.|.+.++........+...-.....++++|.+.. +.+-... +.|..+
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            111111122345678887554 4455555678999998754433333223345688999985554 4444444 778888


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      ++... ....+..........++++|++..|..+ ...+.|..+|+........+.........+..    ..+.+.++-
T Consensus       188 ~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav----~~~~ly~td  262 (349)
T 3v64_C          188 SMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV----FEDSLYWTD  262 (349)
T ss_dssp             ETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE----ETTEEEEEE
T ss_pred             eCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE----ECCEEEEec
Confidence            87543 2333332233345667899876666555 45678999998654433333333333333332    245677777


Q ss_pred             ecCCeEEEEECCchheee
Q 021459          256 SEDNCVYVWDLQQKTMIQ  273 (312)
Q Consensus       256 ~~dg~i~iwd~~~~~~~~  273 (312)
                      ...+.|..++..+++...
T Consensus       263 ~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          263 WHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             TTTTEEEEEETTTCCSCE
T ss_pred             CCCCeEEEEEccCCCccE
Confidence            778888888855444333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.81  E-value=3e-05  Score=63.39  Aligned_cols=234  Identities=12%  Similarity=0.092  Sum_probs=133.1

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee------------------cccccEEEEEEec-CCCEEEEee
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR------------------GHSDFVFCVNFNP-QSNLIVSGS  126 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~------------------~~~~~v~~~~~~~-~~~~l~s~~  126 (312)
                      ...+++|.++++++.++..++.|..|+..+.........                  ........+++.+ +++ |+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            445788999998788888889999998765321111100                  0112467888997 554 55554


Q ss_pred             cCCcEEEEEcCCCeEEEEeee----cCcCeEEEEEcc-CCCEEEEeeC-----------------CCeEEEEeCCCCcee
Q 021459          127 FDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNR-DGSLIVSGSH-----------------DGTCKIWDAGEGACL  184 (312)
Q Consensus       127 ~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~  184 (312)
                      ..+.|..+|..+++.......    .......+++.+ +|++.++-..                 ++.+..+|..+++..
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            455588888775542221111    112467899999 9987776432                 367888887665532


Q ss_pred             eEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeec----
Q 021459          185 KTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE----  257 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  257 (312)
                      ... .. ......++++|+++.|.++ +..+.|.+|++....  ....+..... ...+   ...++|.+.++...    
T Consensus       179 ~~~-~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi---~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          179 LLL-KE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI---KRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEE-EE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE---EECTTSCEEEEEEEETTS
T ss_pred             Eec-cC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe---EECCCCCEEEEecCcccc
Confidence            211 11 1112346799999866655 566899999987521  1222221112 2222   23356777666544    


Q ss_pred             ------CCeEEEEECCchheeecccCC----ccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          258 ------DNCVYVWDLQQKTMIQKLDGH----TDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       258 ------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                            .+.|..+|.. ++.+..+...    ...+..+++ .++..++ ++.. ...|..+++
T Consensus       253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v-~~~~-~~~i~~~~~  311 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYI-GTLF-HGSVGILVY  311 (322)
T ss_dssp             STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEE-ECSS-CSEEEEEEC
T ss_pred             cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEE-eecC-CCceEEEec
Confidence                  5678888864 4444444322    234566666 3454444 4332 346666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.80  E-value=2.2e-05  Score=61.49  Aligned_cols=203  Identities=10%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             eeecccccceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      +-+.+-.+.++.++|+|+++.|+ ....++.|...|.. ++.+.++.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45667777899999999877555 46778888888987 777666532 1245678899988887777656778888887


Q ss_pred             CCCce--eeeeee------cccccEEEEEEecCCCEEEEeecCCcEEEEEcC---CCeEEEEee-------ecCcCeEEE
Q 021459           94 RTPFD--CLKTLR------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK---TGKCTRVIR-------AHSMPVTSV  155 (312)
Q Consensus        94 ~~~~~--~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~-------~~~~~v~~~  155 (312)
                      .....  .+....      ........++|+|+++.|+++.......+|...   .......+.       .+-..+..+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            54332  112221      123345789999999888777766555555543   111122221       122346789


Q ss_pred             EEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccC--------CCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459          156 HFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDD--------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNY  221 (312)
Q Consensus       156 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~  221 (312)
                      +++|.. ++++....+..+..+|.. ++....+.-.        .-+...-++++++|+..++ +.-+.++.|..
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            999954 455566667778888865 4443333221        1245677889999985554 66667777653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.77  E-value=2e-06  Score=77.71  Aligned_cols=239  Identities=10%  Similarity=0.112  Sum_probs=134.8

Q ss_pred             EEEEcc-CCCeEEEEcCCC-----------eEEEEeCCCCce-eeeee-ecccccEEEEEEecCCCEEEEeec-CCcEEE
Q 021459           69 DLAWSS-DSHYICSASDDR-----------TLRIWDARTPFD-CLKTL-RGHSDFVFCVNFNPQSNLIVSGSF-DESIRI  133 (312)
Q Consensus        69 ~~~~~~-~~~~l~~~~~d~-----------~v~~wd~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~  133 (312)
                      ..++.+ ++++++.|+.+.           .+.+||..+..- .+..+ ..+.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 788888876542           578899876421 11122 122233345677788999999985 457999


Q ss_pred             EEcCCCeEEEEeeecCc-CeEEEEEccCCCEEEEee-CC-----CeEEEEeCCCCceeeEc------ccCCCCcEEEEEE
Q 021459          134 WEVKTGKCTRVIRAHSM-PVTSVHFNRDGSLIVSGS-HD-----GTCKIWDAGEGACLKTL------IDDKDPAVSFAKF  200 (312)
Q Consensus       134 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~  200 (312)
                      ||..+++-...-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+++.....      .......   ..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~---~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ---GLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT---GGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc---cee
Confidence            99988764432211111 123455667899999988 34     46899999876644320      0000000   112


Q ss_pred             CCCCCEEEEEecC---------CeEEEEEcCCCcEEEEEEccCC-------ceeEEEEEEEccCCcEEEEeecCC-----
Q 021459          201 SPNGKFILVGTLD---------STLKLWNYSAGKFLKIYTGHTN-------KKYCITSTFSVTNGKYIVSGSEDN-----  259 (312)
Q Consensus       201 ~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~dg-----  259 (312)
                      ..++..++.++.+         ..+..||..+............       ........+...++++++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            2344555555444         4567888877665433222111       011122223335788888888643     


Q ss_pred             ------eEEEEECCchheeecc--cCC-ccceEEEEEcCCCceEEEeeecCC---------eeEEEEee
Q 021459          260 ------CVYVWDLQQKTMIQKL--DGH-TDSVISVTCHPTENKIASAGLDGD---------RTVRVWVQ  310 (312)
Q Consensus       260 ------~i~iwd~~~~~~~~~~--~~h-~~~v~~l~~~p~~~~l~~~~~dgd---------~~v~iw~~  310 (312)
                            .|.+||..+.+-....  .-. ...-.+.+..|+++.++.+|.+..         ..+.+|++
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp  495 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP  495 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence                  6888887654332211  111 111234456789999999986521         46778775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.77  E-value=1e-06  Score=80.73  Aligned_cols=194  Identities=13%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             ceEEEEEC-CCCCEEEEEe-CC----CeEEEEeCCCc-ceEEE-eeeccCCEEEEEEccCCCeEEEEcCC-----CeEEE
Q 021459           24 AVSCVKFS-NDGTLLASAS-LD----KTVIIWSASSL-ALVHR-FVGHSEGISDLAWSSDSHYICSASDD-----RTLRI   90 (312)
Q Consensus        24 ~v~~~~~s-~~~~~l~t~~-~d----~~i~vw~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~   90 (312)
                      .+...+|| |||++||-+. .+    ..|+++++.++ +.+.. +..   ....++|+||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 9999887543 22    35999999988 63221 111   13468899999877766654     25778


Q ss_pred             EeCCCCcee-eeeee-cccccEEEEEEecCCCEEEEeec---CCcEEEEEcCCC--eE--EEEeeecCcCeEEEEEccCC
Q 021459           91 WDARTPFDC-LKTLR-GHSDFVFCVNFNPQSNLIVSGSF---DESIRIWEVKTG--KC--TRVIRAHSMPVTSVHFNRDG  161 (312)
Q Consensus        91 wd~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~--~~--~~~~~~~~~~v~~~~~~~~~  161 (312)
                      +++.++... ...+. ........+.|+||+++|+..+.   ...|.++|+.++  +.  .............+.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            888764311 11111 22345667899999998776553   345888898765  22  22222333445555554444


Q ss_pred             CEEEEeeCC----CeEEEEeCCCCceeeE-cccCCCCcEEEEEECCCCCEE-EEEecCCe--EEEEEc
Q 021459          162 SLIVSGSHD----GTCKIWDAGEGACLKT-LIDDKDPAVSFAKFSPNGKFI-LVGTLDST--LKLWNY  221 (312)
Q Consensus       162 ~~l~~~~~d----~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~--i~v~d~  221 (312)
                      .+++....+    ..|..+|+.+...... +... ........+++.++.| ++...++.  |.++|+
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            444444433    3566677654211122 2222 2222222333344544 45566665  555664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.76  E-value=3.3e-05  Score=64.97  Aligned_cols=244  Identities=6%  Similarity=-0.070  Sum_probs=139.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCceeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDCLKT  102 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~~~~  102 (312)
                      .-+|.+..++ .+|+.+. ...|+..+........... ....+..++|++.+..|+.. ...+.|..+++..... ...
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~  153 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV  153 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEE
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEE
Confidence            3445554553 3444333 3568888877655433333 33457899999866555544 4567888898875421 111


Q ss_pred             eecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCC-CeEEEEeCC
Q 021459          103 LRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHD-GTCKIWDAG  179 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-~~i~iwd~~  179 (312)
                      ..........+++++.+.. +++-...+.|.+.++........+...-.....++++|.+..|... ... +.|..+++.
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            1111123345777875544 4555556788888876543333332233456889999866554443 344 678888875


Q ss_pred             CCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459          180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED  258 (312)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  258 (312)
                      ... ...+..........++++|++..|..+ +..+.|..+|+........+.........+..    ..+.++.+-...
T Consensus       234 G~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav----~~~~ly~td~~~  308 (386)
T 3v65_B          234 GSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV----FEDSLYWTDWHT  308 (386)
T ss_dssp             SCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE----ETTEEEEEETTT
T ss_pred             CCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE----ECCEEEEeeCCC
Confidence            432 222322223335667899876666555 45678999998654433333323233333332    345677777788


Q ss_pred             CeEEEEECCchheeeccc
Q 021459          259 NCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       259 g~i~iwd~~~~~~~~~~~  276 (312)
                      +.|..++..+++....+.
T Consensus       309 ~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          309 KSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TEEEEEETTTCCSCEEEE
T ss_pred             CeEEEEECCCCcceEEEc
Confidence            999999865554444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=2.8e-05  Score=66.32  Aligned_cols=154  Identities=10%  Similarity=0.101  Sum_probs=95.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-C----eEEEEeCCCCc
Q 021459           24 AVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-R----TLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~v~~wd~~~~~   97 (312)
                      .-..++++| ++..|..+...+.|+.++........ +.........++|++++++|+.+... +    .+...+.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            346789998 45556665555889999988765433 33344567899999999966666542 1    33334432221


Q ss_pred             eeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCE-EEEeeCCCeEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSL-IVSGSHDGTCK  174 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~i~  174 (312)
                      .....+.. ......++++| ++.++++-..++.|..++...+......... ......++++|++++ +++-...+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11111111 12235677899 6666666666788999998876643322221 233578999999994 45555677888


Q ss_pred             EEeCC
Q 021459          175 IWDAG  179 (312)
Q Consensus       175 iwd~~  179 (312)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            87754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.75  E-value=1.1e-05  Score=73.98  Aligned_cols=194  Identities=9%  Similarity=0.082  Sum_probs=108.6

Q ss_pred             CEEEEEEc-cCCCeEEEEcC-C----CeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEE
Q 021459           66 GISDLAWS-SDSHYICSASD-D----RTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRI  133 (312)
Q Consensus        66 ~v~~~~~~-~~~~~l~~~~~-d----~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~  133 (312)
                      .+...+|+ |||++|+.+.. +    ..|+++|+.++ ......+.   .....+.|+||++.|+....+     ..|+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998875533 2    25999999876 42111121   113357899999887776654     25788


Q ss_pred             EEcCCCeE--EEEeee-cCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCc-ee--eEcccCCCCcEEEEEECCCC
Q 021459          134 WEVKTGKC--TRVIRA-HSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGA-CL--KTLIDDKDPAVSFAKFSPNG  204 (312)
Q Consensus       134 wd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~  204 (312)
                      +++.+++.  ...+.. .......+.|+|||++|+..+.   ...+.++|+.++. ..  ..+............|+. |
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            88877642  223322 2233567889999998876553   3467888887652 12  333332222222233333 5


Q ss_pred             CEEEEEe-cC----CeEEEEEcCCC-cEEE-EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEE--EEC
Q 021459          205 KFILVGT-LD----STLKLWNYSAG-KFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV--WDL  266 (312)
Q Consensus       205 ~~l~~~~-~d----~~i~v~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i--wd~  266 (312)
                      +.|+..+ .+    ..|..+|+.++ +... .+. +.... .+.. +...++.++++...+|..++  +++
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~-~l~~-~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDV-FMES-IAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSE-EEEE-EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCc-EEEE-EEEECCEEEEEEEeCCEEEEEEEec
Confidence            5554443 33    36777777642 2222 222 22221 1221 22234556677788886554  564

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.73  E-value=9.8e-06  Score=71.77  Aligned_cols=194  Identities=14%  Similarity=0.094  Sum_probs=115.9

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCcceEEEeeeccC-C---------E-EEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459           34 GTLLASASL-DKTVIIWSA-SSLALVHRFVGHSE-G---------I-SDLAWSSDSHYICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        34 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~-~---------v-~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      +..++.++. ++.|.-+|. .+++.+.+...... .         + ..++.  .+..++.++.|+.+..+|..++...-
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 889999999 89988876643211 0         0 11222  35677888889999999998875433


Q ss_pred             ee-eecccc--cEE-EEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecCcC-------------------
Q 021459          101 KT-LRGHSD--FVF-CVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHSMP-------------------  151 (312)
Q Consensus       101 ~~-~~~~~~--~v~-~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~-------------------  151 (312)
                      +. ...+..  .+. ..... + ..++.++.      ++.|..+|.++|+.+-.+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            22 111110  111 11111 3 45555554      789999999999877655432110                   


Q ss_pred             -------------------eEEEEEccCCCEEEEeeCC----------------CeEEEEeCCCCceeeEcccCC-----
Q 021459          152 -------------------VTSVHFNRDGSLIVSGSHD----------------GTCKIWDAGEGACLKTLIDDK-----  191 (312)
Q Consensus       152 -------------------v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~-----  191 (312)
                                         ...+++.++...+..++.+                +.|..+|..+++.+-.+....     
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                               0124566665566655532                358899999988765543211     


Q ss_pred             ---CCcEEEEEECCCCC---EEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          192 ---DPAVSFAKFSPNGK---FILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       192 ---~~~~~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                         ..........++|+   .++.++.+|.++++|..+++.+....
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence               01111122234674   56778889999999999998876554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=2.2e-05  Score=67.06  Aligned_cols=238  Identities=11%  Similarity=0.148  Sum_probs=133.7

Q ss_pred             CEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-C----cEEEEEcCCC
Q 021459           66 GISDLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-E----SIRIWEVKTG  139 (312)
Q Consensus        66 ~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g----~i~~wd~~~~  139 (312)
                      ....|+++| ++..|+++...+.|+.+|+....  +..+.........++++++++.|+.+... +    .+...+.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            346789998 45556666554788889987632  22332334456789999999966665542 2    23334432 2


Q ss_pred             eEE--EEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCe
Q 021459          140 KCT--RVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDST  215 (312)
Q Consensus       140 ~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~  215 (312)
                      ...  ..+.. ......++++| ++.++++-..++.|..++...+................++++|+|++|.++ ...+.
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            211  22222 22356788999 777777777788999999876654221111112234567899999955444 56789


Q ss_pred             EEEEEcCCC--cE--EEEEEccC---C----------ceeEEEEEEEc--------cCCcEEEEeecCCeEEEEECCchh
Q 021459          216 LKLWNYSAG--KF--LKIYTGHT---N----------KKYCITSTFSV--------TNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       216 i~v~d~~~~--~~--~~~~~~~~---~----------~~~~~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                      |..++....  ..  +..+.+..   .          ........+..        .++.+.++-..+++|+.++. ++.
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence            999887532  21  12222210   0          00011011211        23556666667788888874 332


Q ss_pred             eeecccCC------------------ccceEEEEEcCC-CceEEEeeecCCeeEEEEeec
Q 021459          271 MIQKLDGH------------------TDSVISVTCHPT-ENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       271 ~~~~~~~h------------------~~~v~~l~~~p~-~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      . ..+.+.                  -.....|++.|+ +..+++-.  +..+||...++
T Consensus       373 v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~--~n~rIr~i~~e  429 (430)
T 3tc9_A          373 V-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR--ENRRIRKIGYE  429 (430)
T ss_dssp             E-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG--GGTEEEEEEEC
T ss_pred             E-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC--CCCeEEEEccC
Confidence            2 121110                  114789999995 54444433  34578877665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.71  E-value=6.5e-05  Score=61.30  Aligned_cols=229  Identities=7%  Similarity=-0.029  Sum_probs=132.1

Q ss_pred             EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCC---ceeeeeeecccccEEE
Q 021459           37 LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTP---FDCLKTLRGHSDFVFC  112 (312)
Q Consensus        37 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~---~~~~~~~~~~~~~v~~  112 (312)
                      |+.+.. ..|+..++.+.+....+. ....+..++|++++..|+.+ ...+.|..+++...   ......+.........
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            434333 467888887765544332 34567899999876555544 45688999987651   1111112212123457


Q ss_pred             EEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CC-CeEEEEeCCCCceeeEccc
Q 021459          113 VNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HD-GTCKIWDAGEGACLKTLID  189 (312)
Q Consensus       113 ~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~  189 (312)
                      +++++.+. ++++-...+.|.+.++........+.........++++|.+..++... .. +.|...++.. .....+..
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEE
Confidence            88886554 445555678899999875443333332334568999998655544443 33 6788887753 32333322


Q ss_pred             CCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEcc--CCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          190 DKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       190 ~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      ........+++++++..|..+ +..+.|..+|+............  ......+.  .  ..+.++++-...+.|..++.
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~gia--v--~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA--V--FEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE--E--ETTEEEEEETTTTEEEEEET
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEE--E--ECCEEEEEECCCCeEEEEeC
Confidence            223345677899877766655 45679999998754332222321  12222332  2  24667777778889999987


Q ss_pred             Cchhee
Q 021459          267 QQKTMI  272 (312)
Q Consensus       267 ~~~~~~  272 (312)
                      .+++..
T Consensus       237 ~~g~~~  242 (316)
T 1ijq_A          237 LTGSDV  242 (316)
T ss_dssp             TTCCCC
T ss_pred             CCCcce
Confidence            655443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.70  E-value=5.9e-05  Score=64.38  Aligned_cols=200  Identities=9%  Similarity=0.033  Sum_probs=113.8

Q ss_pred             ceEEEEECCC--CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---C-eEEEEeCCCCc
Q 021459           24 AVSCVKFSND--GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---R-TLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~v~~wd~~~~~   97 (312)
                      .-..++++|+  +..|..+...+.|+.++..++.... +.........++++++++++++....   . .+...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568899985  4445444444889999987766543 33344568899999999944443211   1 23333322211


Q ss_pred             eeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEe-eecC-cCeEEEEEccCCCE-EEEeeCCCeE
Q 021459           98 DCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHS-MPVTSVHFNRDGSL-IVSGSHDGTC  173 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~-l~~~~~d~~i  173 (312)
                      .....+. ....-..++++| +++++++-..++.|+.+|..++.....+ .... ..-..++++|+++. +++-...+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1001111 112234577888 6666666666788999998877652222 2111 12346999999984 4555566789


Q ss_pred             EEEeCC--CCce--eeEcccC--------------CCCcEEEEEE---------CCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          174 KIWDAG--EGAC--LKTLIDD--------------KDPAVSFAKF---------SPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       174 ~iwd~~--~~~~--~~~~~~~--------------~~~~~~~~~~---------~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      ..++..  ++..  ...+...              .-.....+++         ++++.++++-...+.|+.++. ++..
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            887754  2221  1111111              0112344667         677777776667788999884 4543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.69  E-value=7.5e-05  Score=60.95  Aligned_cols=224  Identities=5%  Similarity=-0.060  Sum_probs=128.9

Q ss_pred             CCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC
Q 021459           43 DKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS  119 (312)
Q Consensus        43 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  119 (312)
                      ...|+..++....  ....+. ....+..++|++.+..|+ +-...+.|..+++...................+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            3578888887653  222222 223456899998655554 445567888888865421111111111234567888744


Q ss_pred             -CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee--CCCeEEEEeCCCCceeeEcccCCCCcEE
Q 021459          120 -NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS--HDGTCKIWDAGEGACLKTLIDDKDPAVS  196 (312)
Q Consensus       120 -~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (312)
                       +++++-...+.|.++++..................+++.|.+..+....  ..+.|...++... ....+....-....
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pn  169 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPN  169 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCcc
Confidence             4455555667899999875433222223334568899998655555444  3577888887532 22223222233456


Q ss_pred             EEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          197 FAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       197 ~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      .+++++++..|..+ +..+.|..+|+..................+.  .  ..+.++.+-...+.|..++..+++..
T Consensus       170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla--v--~~~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT--L--FEDILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE--E--ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE--E--eCCEEEEEecCCCeEEEEECCCCCce
Confidence            67899876666655 4568899999865433333332223333333  2  23566677778889999988655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.64  E-value=6.4e-05  Score=66.74  Aligned_cols=196  Identities=12%  Similarity=0.070  Sum_probs=119.8

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCcceEEEeeeccCC-----------EEEEEEccCCCe----EEEEcCCCeEEEEeCCCC
Q 021459           34 GTLLASASL-DKTVIIWSA-SSLALVHRFVGHSEG-----------ISDLAWSSDSHY----ICSASDDRTLRIWDARTP   96 (312)
Q Consensus        34 ~~~l~t~~~-d~~i~vw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~v~~wd~~~~   96 (312)
                      +..|+.++. ++.|.-+|. .+++.+.+.......           ...+++.|.+..    |+.++.|+.|..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            455666676 888999999 899988776532210           123455444444    788888999999999887


Q ss_pred             ceeeeeee-ccc--ccEE-EEEEecCCCEEEEee------cCCcEEEEEcCCCeEEEEeeecCcC---------------
Q 021459           97 FDCLKTLR-GHS--DFVF-CVNFNPQSNLIVSGS------FDESIRIWEVKTGKCTRVIRAHSMP---------------  151 (312)
Q Consensus        97 ~~~~~~~~-~~~--~~v~-~~~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~---------------  151 (312)
                      ..+-+.-. .+.  ..+. ..... + ..++.++      .+|.|+-+|.++|+.+-.+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            55433211 110  0111 11111 3 3555554      3789999999999877555422110               


Q ss_pred             ----------------------e-EEEEEccCCCEEEEeeCC----------------CeEEEEeCCCCceeeEcccCCC
Q 021459          152 ----------------------V-TSVHFNRDGSLIVSGSHD----------------GTCKIWDAGEGACLKTLIDDKD  192 (312)
Q Consensus       152 ----------------------v-~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~  192 (312)
                                            + ..+++.+...+++.++.+                +.|..+|..+++..-.+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 134566666677776654                3788899999887654432211


Q ss_pred             --------CcEEEEEEC-CCC---CEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          193 --------PAVSFAKFS-PNG---KFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       193 --------~~~~~~~~~-~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                              ......... .+|   +.++.++.+|.++++|..+++.+....
T Consensus       300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                    011112222 567   567778899999999999999876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.57  E-value=0.00022  Score=60.86  Aligned_cols=239  Identities=12%  Similarity=0.151  Sum_probs=133.5

Q ss_pred             CEEEEEEccC--CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC---C-cEEEEEcCCC
Q 021459           66 GISDLAWSSD--SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---E-SIRIWEVKTG  139 (312)
Q Consensus        66 ~v~~~~~~~~--~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g-~i~~wd~~~~  139 (312)
                      ....++|+|+  +..|..+...+.|+.+|..+..  +..+.........++++++++++++....   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            3568899984  4455555444789999986542  33333334457789999999944443321   1 1333333222


Q ss_pred             eE-EEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEccc-CCCCcEEEEEECCCCCEEEEE-ecCCe
Q 021459          140 KC-TRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLID-DKDPAVSFAKFSPNGKFILVG-TLDST  215 (312)
Q Consensus       140 ~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~d~~  215 (312)
                      .. ...+. .......++++| ++.++++-..++.|..+|..++.....+.. ........++++|+++.|.++ ...+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11 01111 223346788999 777777766788999999876655222221 112223357899999955554 55689


Q ss_pred             EEEEEcCC--CcE--EEEEEccCC-------------ceeEEEEEEE--------ccCCcEEEEeecCCeEEEEECCchh
Q 021459          216 LKLWNYSA--GKF--LKIYTGHTN-------------KKYCITSTFS--------VTNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       216 i~v~d~~~--~~~--~~~~~~~~~-------------~~~~~~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                      |+.+++..  +..  ...+.+...             ........+.        ..++.+.++-..+++|+.++. ++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            99988752  321  112222100             0011222221        345667777778888998875 332


Q ss_pred             eeecccCC------------------ccceEEEEEc-CCCceEEEeeecCCeeEEEEeec
Q 021459          271 MIQKLDGH------------------TDSVISVTCH-PTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       271 ~~~~~~~h------------------~~~v~~l~~~-p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      . ..+.+.                  -.....|++. +++..+++-.  +..+||...++
T Consensus       376 v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~--~n~rIr~i~~e  432 (433)
T 4hw6_A          376 V-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC--DNHRVRKIAPE  432 (433)
T ss_dssp             E-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG--GGTEEEEEEEC
T ss_pred             E-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC--CCCEEEEEecC
Confidence            2 222111                  1236789999 5565555443  34678877765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.53  E-value=0.00019  Score=63.62  Aligned_cols=196  Identities=12%  Similarity=0.069  Sum_probs=115.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCE---------EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGI---------SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      +..++.++.++.+.-+|..+++.+.++.......         ..+++  .+..++.++.|+.|..+|..++...-+...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            3445555554458889999999887765432210         11222  355677788899999999988754332211


Q ss_pred             -cccc--cE-EEEEEec---CCC-EEEEee------cCCcEEEEEcCCCeEEEEeeecCcC-------------------
Q 021459          105 -GHSD--FV-FCVNFNP---QSN-LIVSGS------FDESIRIWEVKTGKCTRVIRAHSMP-------------------  151 (312)
Q Consensus       105 -~~~~--~v-~~~~~~~---~~~-~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~-------------------  151 (312)
                       .+..  .+ .......   +++ .++.++      .++.|.-+|.++|+.+-........                   
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence             1110  01 0111111   122 566654      3788999999999876543221000                   


Q ss_pred             ----------------------eEEEEEccCCCEEEEeeC--------------------C----CeEEEEeCCCCceee
Q 021459          152 ----------------------VTSVHFNRDGSLIVSGSH--------------------D----GTCKIWDAGEGACLK  185 (312)
Q Consensus       152 ----------------------v~~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~  185 (312)
                                            -..++++|+..+++.+..                    |    +.|..+|..+++..-
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                  012456666666665552                    2    579999999988765


Q ss_pred             EcccC-CC-------CcEEEEEEC-CCCC---EEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          186 TLIDD-KD-------PAVSFAKFS-PNGK---FILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       186 ~~~~~-~~-------~~~~~~~~~-~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .+... ++       ......... .+|+   .++.++.+|.++++|..+++.+..+.
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            54321 11       111112222 4674   77888999999999999999876554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.0006  Score=62.85  Aligned_cols=264  Identities=16%  Similarity=0.148  Sum_probs=150.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-------eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-------GHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..|.++...+++.+.+.. .+ -+.+|+..+.+......       .....|.++...++|.+.+ |...+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence            568888888888766543 44 58888876654322111       1235688998888886554 55545678888765


Q ss_pred             Ccee-eee-------e-----ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---------ecCcCeE
Q 021459           96 PFDC-LKT-------L-----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---------AHSMPVT  153 (312)
Q Consensus        96 ~~~~-~~~-------~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---------~~~~~v~  153 (312)
                      .... ...       .     .-....|.++...++++ +..|+.++-|..++..++.......         .....|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            3211 000       0     01235688888888775 4556666678888877654322110         0234588


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc---cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          154 SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI---DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      ++...++|.+. .|+.++-+..+|..++.... +.   .-....+..+..++++.+. +|+.++.+..+|..+++... +
T Consensus       367 ~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~  442 (781)
T 3v9f_A          367 SVCDDGQGKLW-IGTDGGGINVFENGKRVAIY-NKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQI-I  442 (781)
T ss_dssp             EEEECTTSCEE-EEEBSSCEEEEETTEEEEEC-C-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEE-C
T ss_pred             EEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE-ccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEE-e
Confidence            88888877654 56666668889876543221 11   1122446666677777644 46766778899877665432 2


Q ss_pred             EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC-----CccceEEEEEcCCCceEEE
Q 021459          231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG-----HTDSVISVTCHPTENKIAS  296 (312)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~l~~  296 (312)
                      .........+.......++.+. .|+. +-|..+|..+++.......     ....|.++...+++...+.
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             ccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence            2110111123333333445544 4455 4588898876543221111     1357889988888765543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.51  E-value=0.00033  Score=59.17  Aligned_cols=237  Identities=8%  Similarity=-0.032  Sum_probs=139.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCc---eeeeeeecccccE
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPF---DCLKTLRGHSDFV  110 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~---~~~~~~~~~~~~v  110 (312)
                      .+|+.+.. ..|+..++........+ .....+..++|++.+..|+.. ...+.|+.+++....   .............
T Consensus        84 ~~ll~~~~-~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           84 AYLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             CEEEEEET-TEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEecc-ceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            34544443 67888888766543333 344667899999876655554 456788888876421   1111222223345


Q ss_pred             EEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee--CCCeEEEEeCCCCceeeEc
Q 021459          111 FCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS--HDGTCKIWDAGEGACLKTL  187 (312)
Q Consensus       111 ~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~  187 (312)
                      ..+++++. ++++++-...+.|.+.++........+.........++++|.+..|+...  ..+.|...++.... ...+
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~  240 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  240 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEE
Confidence            67888874 44555555678899999876544433333334578999998655554443  23678888875433 2233


Q ss_pred             ccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          188 IDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      ....-.....+++++++..|..+ ...+.|..+|+.......................  ..+.++.+-...+.|..+|.
T Consensus       241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEES
T ss_pred             EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEc
Confidence            22223445668899877777666 4567899999865544333333221122222222  34567777778888999987


Q ss_pred             Cchheeeccc
Q 021459          267 QQKTMIQKLD  276 (312)
Q Consensus       267 ~~~~~~~~~~  276 (312)
                      .+++....+.
T Consensus       319 ~~G~~~~~i~  328 (400)
T 3p5b_L          319 LTGSDVNLLA  328 (400)
T ss_dssp             SSCCCCEEEE
T ss_pred             CCCCceEEEe
Confidence            6665544443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.50  E-value=0.00032  Score=58.08  Aligned_cols=204  Identities=9%  Similarity=-0.003  Sum_probs=116.7

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceeee
Q 021459           24 AVSCVKFSNDGTLLASA-SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCLK  101 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~~  101 (312)
                      ....++|++.+..|..+ ...+.|..++.........+.........+++.+.+. +.++-...+.|.+.++..... ..
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~  152 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KV  152 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EE
Confidence            45788999766655544 4567888888876554332222223456899987554 445555667899998865322 11


Q ss_pred             eeecccccEEEEEEecCCCEEEEee-cC-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEeC
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGS-FD-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWDA  178 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~-~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~  178 (312)
                      ........-..++++|.+..++... .. +.|...++............-.....++++|++..| ++-...+.|..+|+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            2222234457889998666555444 34 678888876433222222222346789999865554 44455678999987


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      .... ...+..........+++ ..+..+++-...+.|..+|..+++....+
T Consensus       233 dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          233 DGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            6432 22222222222333444 23444444455667777775555544433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00075  Score=62.22  Aligned_cols=266  Identities=9%  Similarity=0.051  Sum_probs=147.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-------eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-------GHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ..|.++...+++.+.+ +..++-+..++..+.+...-..       -....|.++...+++.+.+.. .+ -+.+||..+
T Consensus       163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~  239 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK-GLALFNANT  239 (781)
T ss_dssp             CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE-TT-EEEEEETTT
T ss_pred             cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC-cHheECCCC
Confidence            4577777777776555 4455457788877654322110       013468889888888766544 44 688898765


Q ss_pred             Cceee-eee-----ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--------------ecCcCeEEE
Q 021459           96 PFDCL-KTL-----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--------------AHSMPVTSV  155 (312)
Q Consensus        96 ~~~~~-~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------------~~~~~v~~~  155 (312)
                      ..... ...     ......|.++...+++. +..|+..+-|.++|..+++......              .....|.++
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i  318 (781)
T 3v9f_A          240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI  318 (781)
T ss_dssp             TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred             CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence            32111 000     01234688888877765 4455664568889987665322111              123468899


Q ss_pred             EEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc--------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE
Q 021459          156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI--------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL  227 (312)
Q Consensus       156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  227 (312)
                      ...++|.+ -.|+.++-|..++..+.....-..        .-....+..+..+++|. |.+|+.++-|..||..++...
T Consensus       319 ~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~  396 (781)
T 3v9f_A          319 FQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI  396 (781)
T ss_dssp             EECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred             EEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE
Confidence            88888864 456666778888876554322110        00123466777777776 445666677888987654322


Q ss_pred             EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecc--cCCccceEEEEEcCCCceEE
Q 021459          228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL--DGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~  295 (312)
                      ............+.......++.+.+ |+.++-|..+|..+++.....  ......|.++...+++...+
T Consensus       397 ~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi  465 (781)
T 3v9f_A          397 YNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI  465 (781)
T ss_dssp             CC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred             EccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence            11100000111233333334555444 666666888887655432211  11345788888887776544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.00022  Score=55.87  Aligned_cols=192  Identities=14%  Similarity=0.160  Sum_probs=120.8

Q ss_pred             eecccccEEEEEEecCCCEEEE-eecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      +.+-.+.+..++|+|+++.|++ ...++.|...|+. ++.++.+... ....-.+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            4444567899999998776554 6677889999988 7777666432 24567888988888777766778888887765


Q ss_pred             Cce---eeEcc-----cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC---CcEEEEEEc-----cCCceeEEEEEE
Q 021459          181 GAC---LKTLI-----DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA---GKFLKIYTG-----HTNKKYCITSTF  244 (312)
Q Consensus       181 ~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~-----~~~~~~~~~~~~  244 (312)
                      ...   .....     .........++++|.++.|.++.......+|.+..   ...+.....     .......-...+
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            332   11111     11233467889999998887776665555655531   112222211     000001123345


Q ss_pred             EccCCcEEEEeecCCeEEEEECCchheeec--cc-CC------ccceEEEEEcCCCceEEE
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQK--LD-GH------TDSVISVTCHPTENKIAS  296 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~-~h------~~~v~~l~~~p~~~~l~~  296 (312)
                      .+..+++++...++..+..+|.... .+..  +. +.      -..--.|++.|+|+.+++
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence            6677888888889999999997644 3322  22 21      124579999999986655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.46  E-value=0.00035  Score=56.98  Aligned_cols=194  Identities=10%  Similarity=0.238  Sum_probs=117.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC----CC---eEEEEc-C--CCeEEEEeCCCCceeeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD----SH---YICSAS-D--DRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~v~~wd~~~~~~~~~~~  103 (312)
                      ..++++..+.+-+.+||+ .++.+..+..  +.++.+..-|.    |+   ++++.. .  ++.|.+|++......+..+
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            345666677789999999 7777777643  45666655552    22   233333 3  5789999764222223333


Q ss_pred             ec------cc-ccEEEEEE--ecCCC--EEEEeecCCcEEEEEcC---C----CeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459          104 RG------HS-DFVFCVNF--NPQSN--LIVSGSFDESIRIWEVK---T----GKCTRVIRAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus       104 ~~------~~-~~v~~~~~--~~~~~--~l~s~~~dg~i~~wd~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
                      ..      .. ..+..+++  +|...  +++....+|.+..|++.   .    .+.++.+.. ...+..+...+....|+
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence            11      11 23334555  66443  57777888999999883   2    244455543 34677888888888999


Q ss_pred             EeeCCCeEEEEeCC-----CCceeeEcc-cCCCCcEEEEEE--CCCCC-EEEEEe-cCCeEEEEEcC-CCcEEEEEE
Q 021459          166 SGSHDGTCKIWDAG-----EGACLKTLI-DDKDPAVSFAKF--SPNGK-FILVGT-LDSTLKLWNYS-AGKFLKIYT  231 (312)
Q Consensus       166 ~~~~d~~i~iwd~~-----~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~l~~~~-~d~~i~v~d~~-~~~~~~~~~  231 (312)
                      .+-++..|..++..     +++.+..+- ......+..+.+  .++++ +|++++ .++.+.+||.. +.+.+..+.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99998777777744     233343331 111223555555  55555 666665 56799999986 556666553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.46  E-value=0.00044  Score=58.08  Aligned_cols=206  Identities=10%  Similarity=0.021  Sum_probs=118.5

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceee
Q 021459           23 RAVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      .....++|++.+..|. +-...+.|..++.........+.........+++.+.+..| ++-...+.|.+.++..... .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~  194 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  194 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-E
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-E
Confidence            3467789997665554 44456889889887655433232222345678898755444 4555567888888764322 1


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeec-C-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEe
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSF-D-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWD  177 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd  177 (312)
                      .........-..++++|.+..|+.... . +.|..+++............-.....++++|++..| ++-+..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            122222244578889987766555543 3 678888876443322222222346789999765544 4555667899998


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      +.... ...+..........+++ ..+..+++-...+.|..+|..+++.+..+.
T Consensus       275 ~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          275 LDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            76432 22222222223334445 234445555566778888765665544443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.44  E-value=0.00096  Score=61.17  Aligned_cols=235  Identities=8%  Similarity=-0.034  Sum_probs=133.9

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCc---eeeeeeecccccEE
Q 021459           36 LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPF---DCLKTLRGHSDFVF  111 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~---~~~~~~~~~~~~v~  111 (312)
                      +|+.+. ...|+..++........+ .....+..|+|.+.+..|+ +-...+.|+.+++....   .....+........
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             cccccc-ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            444333 356777777655443333 2345678899998655544 44456778888876421   11112221223445


Q ss_pred             EEEEecCCCEE-EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CC-CeEEEEeCCCCceeeEcc
Q 021459          112 CVNFNPQSNLI-VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HD-GTCKIWDAGEGACLKTLI  188 (312)
Q Consensus       112 ~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~  188 (312)
                      .+++.+.++.| ++-...+.|.+.++........+.........|+++|.+..|+... .. +.|...++.... ...+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv  553 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  553 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEE
Confidence            68888776544 4555668899999875543333333334578999999755554443 22 678888876433 33333


Q ss_pred             cCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          189 DDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      .........+++++.+..|..+ ...+.|..+++.......+..........+.+..  ..+.++++-...+.|...|..
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence            3333445667888776666665 4557899999865554444443222222233232  234566677777888888866


Q ss_pred             chheeecc
Q 021459          268 QKTMIQKL  275 (312)
Q Consensus       268 ~~~~~~~~  275 (312)
                      +++.+..+
T Consensus       632 tG~~~~~l  639 (791)
T 3m0c_C          632 TGSDVNLL  639 (791)
T ss_dssp             TCCCCEEE
T ss_pred             CCcceEEe
Confidence            55444333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.33  E-value=0.00059  Score=55.18  Aligned_cols=156  Identities=5%  Similarity=0.057  Sum_probs=102.1

Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEeCCCcceEEEeeec-----c--CCEEEEEE---ccCCCeEEEEc----------
Q 021459           25 VSCVKFSNDGTLLASAS-LDKTVIIWSASSLALVHRFVGH-----S--EGISDLAW---SSDSHYICSAS----------   83 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~-----~--~~v~~~~~---~~~~~~l~~~~----------   83 (312)
                      -.+++|++....+..++ ..+.|..|+...+.........     .  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34689988555555555 7899999998755433222111     1  13578999   68877776543          


Q ss_pred             ---CCCeEEEEeCC---CCcee-eeeeeccc-----------ccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEE
Q 021459           84 ---DDRTLRIWDAR---TPFDC-LKTLRGHS-----------DFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRV  144 (312)
Q Consensus        84 ---~d~~v~~wd~~---~~~~~-~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~  144 (312)
                         .+..|..||+.   ++... ...+....           .....++..++|+..++++.. +.|...+.... ....
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence               25779999987   44221 11221111           247789999999999999888 88877776543 2222


Q ss_pred             ee-ec-----CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459          145 IR-AH-----SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG  181 (312)
Q Consensus       145 ~~-~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (312)
                      +. ..     ....+.++++|++..|++....+.+..+|+.+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            21 11     122569999999998888877999999998743

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0016  Score=56.09  Aligned_cols=205  Identities=10%  Similarity=0.069  Sum_probs=114.7

Q ss_pred             ceEEEEECCC-C-CEEEEEeCCCeEEEEeCCCcceEEEeeec---cCCEEEEEE-------ccCCCeEEEEcCCC-----
Q 021459           24 AVSCVKFSND-G-TLLASASLDKTVIIWSASSLALVHRFVGH---SEGISDLAW-------SSDSHYICSASDDR-----   86 (312)
Q Consensus        24 ~v~~~~~s~~-~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-----   86 (312)
                      .-..|+|+|. . +++++-...+.|++.|...+........-   ......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568899983 4 44455454577888898876654433221   235789999       99998666665543     


Q ss_pred             --eEEEEeCCCCceee-----eeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcC-------CCeE----------
Q 021459           87 --TLRIWDARTPFDCL-----KTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVK-------TGKC----------  141 (312)
Q Consensus        87 --~v~~wd~~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~-------~~~~----------  141 (312)
                        .|.+.+........     ..+... .....++.+|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              25566533300110     111111 12345678895 4555566667889999987       5543          


Q ss_pred             -EEE-eee-cCcCeEEEEEccCCCE-EEEeeCCCeEEEEeC--CCCcee--eEcccC---C------------CCcEEEE
Q 021459          142 -TRV-IRA-HSMPVTSVHFNRDGSL-IVSGSHDGTCKIWDA--GEGACL--KTLIDD---K------------DPAVSFA  198 (312)
Q Consensus       142 -~~~-~~~-~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~--~~~~~~--~~~~~~---~------------~~~~~~~  198 (312)
                       ... +.. .....+.++|+|+|+. +++-+....|+.++.  ..+...  ..+.+.   .            ..+...+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 211 1233578999999995 445456678888554  332210  111111   0            1112134


Q ss_pred             EEC-------CCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          199 KFS-------PNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       199 ~~~-------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      ...       +++.++++=...+.|+.++ .++. +..+.
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Tia  416 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYA  416 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEE
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEe
Confidence            444       4566666666778999998 4554 34443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.25  E-value=0.0012  Score=54.03  Aligned_cols=271  Identities=6%  Similarity=-0.012  Sum_probs=133.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee----eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV----GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ...+.++.|.+.+..++. +..+.|. .....++-.....    .....+.++.+.+ +..++ ++..+.|..- ...+.
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEEE-SSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEEE-CCCCC
Confidence            457999999887777774 5667653 3333333222211    1234578898876 44444 4456654432 22111


Q ss_pred             --eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           98 --DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                        +.+.....+.+.+..+.+.+++..++.+ .+|.|.. ....++.-... ......+..+.+.|++.+++.+...+..+
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~  187 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS  187 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence              1111111123446677776666655554 4565432 22233322222 23345688899999988877665544444


Q ss_pred             EEeC--CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-CCceeEEEEEEEccCCcE
Q 021459          175 IWDA--GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCITSTFSVTNGKY  251 (312)
Q Consensus       175 iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  251 (312)
                      -.|.  .+-+.+   .......+..+.+.+++..++ .+.+|.+++.+...++.-..+... ......+......+++.+
T Consensus       188 S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          188 TWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             EECTTCSSCEEE---ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             EeCCCCCceeEC---CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            4553  122222   112234466677888887654 456787776542223221111111 001111222223345666


Q ss_pred             EEEeecCCeEEEEECCch---heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          252 IVSGSEDNCVYVWDLQQK---TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                      ++++ .+|.|. +....+   +.+.........+.++.+.+++ .+++++.+|  +|.-+
T Consensus       264 ~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G--~i~~~  318 (327)
T 2xbg_A          264 WLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKG--ILLRY  318 (327)
T ss_dssp             EEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTT--EEEEE
T ss_pred             EEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCc--eEEEE
Confidence            6655 466663 333322   2222111233567788887555 455666554  55443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.23  E-value=0.0012  Score=53.28  Aligned_cols=227  Identities=14%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             CCCEEEEEe-CC-----CeEEEEeCCCcceEEEeeeccC-CE-EEEEEccCCCeEEEEcCC-----CeEEEEeCCCCc--
Q 021459           33 DGTLLASAS-LD-----KTVIIWSASSLALVHRFVGHSE-GI-SDLAWSSDSHYICSASDD-----RTLRIWDARTPF--   97 (312)
Q Consensus        33 ~~~~l~t~~-~d-----~~i~vw~~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~--   97 (312)
                      ++.+++.|+ .+     ..+.+||..+.+... +..-.. .. .++ ...++.+++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVAS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccE-EEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            455666666 32     357788877654321 111111 11 112 22356677777654     468889987643  


Q ss_pred             --eeeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEEEEcCCCeEEEEeeecCcCe-EEEEEccCCCEEEEeeC
Q 021459           98 --DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRAHSMPV-TSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~  169 (312)
                        ..+..+......-.++.  .+++.++.|+.+     ..+.+||+.+++-...-....... .++.. .++++++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCC
Confidence              22222211111111222  256677777654     358889988776433211111111 12222 26777777775


Q ss_pred             C-----CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCcee
Q 021459          170 D-----GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       170 d-----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      +     ..+..||+.+.+....-. .........+.  .++..++.|+.+     ..+.+||..+.+....-........
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            4     458889988766443211 11111122222  256777777764     4689999988776544221111111


Q ss_pred             EEEEEEEccCCcEEEEeecC-----CeEEEEECCch
Q 021459          239 CITSTFSVTNGKYIVSGSED-----NCVYVWDLQQK  269 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  269 (312)
                       .....  .++++++.|+.+     ..|.+||+.+.
T Consensus       247 -~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          247 -VGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             -CEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             -eeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence             11111  256777777765     45778887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.18  E-value=0.0022  Score=54.12  Aligned_cols=208  Identities=10%  Similarity=0.005  Sum_probs=120.5

Q ss_pred             ccceEEEEECCCCCEEEEE-eCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCC
Q 021459           22 SRAVSCVKFSNDGTLLASA-SLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDART   95 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~   95 (312)
                      ...+..++|++.+..|.-+ ...+.|+.++....    .....+.........+++.+. +++.++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4567789999866655544 45678888887652    222222223356778999885 44445555677899998875


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCCCe
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGT  172 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~  172 (312)
                      ... .............++++|.+..|+....  .+.|...++............-.....+++++++..|..+ ...+.
T Consensus       191 ~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          191 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             CSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             Cce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            432 2222222334678899997666655543  3678888876443322222222456889999876655544 45678


Q ss_pred             EEEEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          173 CKIWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      |..+|+..... ..+...  .......+++. .+..+.+-...+.|..+|..+++.+..+..
T Consensus       270 I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          270 ISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             EEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred             EEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence            99999864332 222221  11222333342 334445555667888888777766555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.17  E-value=0.0018  Score=52.71  Aligned_cols=205  Identities=10%  Similarity=0.011  Sum_probs=117.5

Q ss_pred             ccceEEEEECCCCCEEEEE-eCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCC
Q 021459           22 SRAVSCVKFSNDGTLLASA-SLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWDART   95 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~   95 (312)
                      .....+++|++++..|..+ ..++.|..++...    ......+.........+++.+.+..| ++-...+.|.+.++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3456789999876655544 4568899998775    22222222222345789998755444 4546678899999865


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEEEEe-eecCcCeEEEEEccCCCEEE-EeeCCC
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIV-SGSHDG  171 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-~~~~d~  171 (312)
                      ... .............++++|.+..++.+...  +.|...++.... ...+ ...-.....+++++++..|. +-+..+
T Consensus       109 ~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          109 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             Cce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            322 11222223455788899876665555443  678888875332 2322 22223467899998765554 445567


Q ss_pred             eEEEEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          172 TCKIWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      .|..+|+.... .+.+...  .......+++. .+..+++-...+.|..+|..+++.+..+
T Consensus       187 ~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          187 SISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            89999986432 2222211  11223334443 3445555556678888887666654444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.15  E-value=2.4e-05  Score=70.98  Aligned_cols=228  Identities=7%  Similarity=-0.016  Sum_probs=124.1

Q ss_pred             CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCCCC---ceeeeeeecccccEEEEEEecC
Q 021459           43 DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDARTP---FDCLKTLRGHSDFVFCVNFNPQ  118 (312)
Q Consensus        43 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~  118 (312)
                      .+.|++.++.+.+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++...   ......+.........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35677777766554333222 24566889998776666553 4578888887641   1111111111112334667654


Q ss_pred             C-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CC-CeEEEEeCCCCceeeEcccCCCCcE
Q 021459          119 S-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HD-GTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       119 ~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      + +++++-...+.|.++++........+.........++++|.+..|+... .. +.|..+++.... ...+........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence            4 4455545567899999876543333332223457788998655444433 22 678777764322 222221222223


Q ss_pred             EEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccC--CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          196 SFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHT--NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      ..++++|++..|..+ +..+.|..+|+........+....  .....+.  .  ..+.++++....+.|..++..+++.+
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gla--v--d~~~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA--V--FEDKVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCE--E--ETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeE--E--ECCEEEEEeCCCCeEEEEEccCCCce
Confidence            456789876555444 566789999986433322222111  1111222  2  13456677778899999998777666


Q ss_pred             eccc
Q 021459          273 QKLD  276 (312)
Q Consensus       273 ~~~~  276 (312)
                      ..+.
T Consensus       619 ~~i~  622 (699)
T 1n7d_A          619 NLLA  622 (699)
T ss_dssp             ECCC
T ss_pred             EEee
Confidence            5554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.13  E-value=0.0022  Score=52.26  Aligned_cols=205  Identities=9%  Similarity=0.007  Sum_probs=117.2

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceE-EEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceee
Q 021459           24 AVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALV-HRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        24 ~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~  100 (312)
                      ...++.|++.+..| .+-...+.|..++....... ..+.........+++.+.+. +..+-...+.|.++++...... 
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-
Confidence            45678898865544 44455688988888765321 11222224556789987544 4455556678999998653221 


Q ss_pred             eeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEe
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWD  177 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd  177 (312)
                      .........-..++++|.+..++....  .+.|...++............-.....++++|++..| ++=+..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            112222334578889987666655553  5778888876432222222222345789999865554 4445667899998


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      +.... .+.+..........+++.. +..+.+-...+.|..+|..+++....+.
T Consensus       195 ~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          195 LDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            76432 2222221222233344432 3444444556788888876666544443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.11  E-value=0.0055  Score=56.22  Aligned_cols=206  Identities=10%  Similarity=0.011  Sum_probs=117.0

Q ss_pred             ccceEEEEECCCCCEEE-EEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCC
Q 021459           22 SRAVSCVKFSNDGTLLA-SASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDART   95 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~   95 (312)
                      ...+.+++|++.+..|+ +-...+.|+.+++...    .....+.........|++.+.+..|+ +-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            45567889988555444 4455678888887652    22222222334567899988775554 445677899999875


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCCCe
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGT  172 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~  172 (312)
                      ... ...+.........++++|....|+....  .+.|...++........+...-.....|++++.+..|+.+ .....
T Consensus       503 ~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          503 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            432 2222223344678999997666665543  2678888886544333333223457889999765555544 45668


Q ss_pred             EEEEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          173 CKIWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      |..+++..... ..+...  .-.....+++.. +.++++-...+.|...|..+++.+..+
T Consensus       582 I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          582 ISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTSCSC-EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCce-EEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            88898854332 222221  111222333322 233344445678888887666554444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=0.0045  Score=53.30  Aligned_cols=238  Identities=14%  Similarity=0.181  Sum_probs=133.8

Q ss_pred             EEEEEEcc-CCCeEEEEcC-CCeEEEEeCCCCceeeeeee-c---ccccEEEEEE-------ecCCCEEEEeecCC----
Q 021459           67 ISDLAWSS-DSHYICSASD-DRTLRIWDARTPFDCLKTLR-G---HSDFVFCVNF-------NPQSNLIVSGSFDE----  129 (312)
Q Consensus        67 v~~~~~~~-~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~-~---~~~~v~~~~~-------~~~~~~l~s~~~dg----  129 (312)
                      ...|+|+| ++..|+.+.. .+.|++.|+... . +..+. .   .......++|       +++++.|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-M-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-E-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-E-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            46789998 3555555543 456888888763 2 22222 1   1224788999       99999777666554    


Q ss_pred             ---cEEEEEcCC-CeEE-----EEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCC-------CCce---------
Q 021459          130 ---SIRIWEVKT-GKCT-----RVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAG-------EGAC---------  183 (312)
Q Consensus       130 ---~i~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~-------~~~~---------  183 (312)
                         .|.+.+... ++..     ..+.... ....++++| ++.++++-..++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               255665443 2211     1222112 335678899 55666677788889999987       4433         


Q ss_pred             --eeEcc-cCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCC--CcE--EEEEEcc---CC----------ceeEEEE
Q 021459          184 --LKTLI-DDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSA--GKF--LKIYTGH---TN----------KKYCITS  242 (312)
Q Consensus       184 --~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~--~~~--~~~~~~~---~~----------~~~~~~~  242 (312)
                        ...+. .........++++|+|+.|.++ +..+.|+.+++..  +..  ...+.+.   ..          .......
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              11211 1112334568899999965444 5678899977643  221  1223221   00          0011112


Q ss_pred             EEEc-------cCCcEEEEeecCCeEEEEECCchheeecccCC------------------------ccceEEEEEcCC-
Q 021459          243 TFSV-------TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH------------------------TDSVISVTCHPT-  290 (312)
Q Consensus       243 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~l~~~p~-  290 (312)
                      .+..       .++.+.++-..+++|+.++. ++ .+.++.+.                        -.....|++.++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            2222       35677777788899999984 33 22222111                        123678999997 


Q ss_pred             CceEEEeeecCCeeEEEEeec
Q 021459          291 ENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       291 ~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +..+++=+  +..+||.+.++
T Consensus       456 g~lyVaD~--~N~rIrki~~~  474 (496)
T 3kya_A          456 EMFYVHDQ--VGHTIRTISME  474 (496)
T ss_dssp             TEEEEEET--TTTEEEEEEEC
T ss_pred             CEEEEEeC--CCCEEEEEECC
Confidence            65555443  44678877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.06  E-value=0.0059  Score=54.54  Aligned_cols=158  Identities=7%  Similarity=-0.060  Sum_probs=90.1

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC--CCeEEEEeCCCCcee
Q 021459           23 RAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD--DRTLRIWDARTPFDC   99 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~~wd~~~~~~~   99 (312)
                      .....+++++.++.| ++-...+.|.+.+.........+...-.....|++.|.+.+|+....  .+.|...++..... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence            457789999865544 44456788999988765432222233345678999997666655542  35666666654221 


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      .......-..-..+++++++..|+.+. ..+.|...|+..................+++..+ ..+.+-...+.|...|.
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            111111223456788998766665554 4577888888654332222211112245666554 45555556677888887


Q ss_pred             CCCc
Q 021459          179 GEGA  182 (312)
Q Consensus       179 ~~~~  182 (312)
                      .+++
T Consensus       242 ~tg~  245 (619)
T 3s94_A          242 YTGE  245 (619)
T ss_dssp             SSCC
T ss_pred             CCCc
Confidence            6654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.05  E-value=0.0059  Score=54.53  Aligned_cols=224  Identities=5%  Similarity=-0.057  Sum_probs=118.6

Q ss_pred             CCeEEEEeCCCcc-eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459           43 DKTVIIWSASSLA-LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        43 d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
                      ...|++.++.... ...........+..++|++.+..|+.+. ..+.|..+++...................+++++.++
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4567777776542 1111222334577899999776666554 4567888887653211112222223567788988655


Q ss_pred             EE-EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee--CCCeEEEEeCCCCceeeEcccCCCCcEEE
Q 021459          121 LI-VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS--HDGTCKIWDAGEGACLKTLIDDKDPAVSF  197 (312)
Q Consensus       121 ~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (312)
                      .+ ++-...+.|.+.++............-.....+++.|.+..|....  ..+.|...++.. .....+..........
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNG  175 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcE
Confidence            54 4545568899999875443323322333467889998654444433  245666666543 2222333223344566


Q ss_pred             EEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459          198 AKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       198 ~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  271 (312)
                      ++++++++.|..+ ...+.|..+|+..........+.......+..    ..+.+..+-..++.|...|..+++.
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~----~~~~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL----FEDILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE----SSSEEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE----eCCEEEEecCCCCEEEEEECCCCcc
Confidence            7888876666555 45678888888654332222211111222221    2235556666778888888765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.04  E-value=0.0033  Score=51.28  Aligned_cols=183  Identities=14%  Similarity=0.295  Sum_probs=106.1

Q ss_pred             CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC----CC---EEEEeeC---CCeEEEEeC--CCCceeeE
Q 021459          119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD----GS---LIVSGSH---DGTCKIWDA--GEGACLKT  186 (312)
Q Consensus       119 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~iwd~--~~~~~~~~  186 (312)
                      ..+++....++-+.+||+ +|+.+..+..  ..++.+..-|+    |+   ++++...   ++++.+|++  .++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            355666667788999999 7877777643  45566665552    22   2233333   578999965  3433 333


Q ss_pred             ccc------CCCCcEEEEEE--CCC-CC-EEEEEecCCeEEEEEcC-------CCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          187 LID------DKDPAVSFAKF--SPN-GK-FILVGTLDSTLKLWNYS-------AGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       187 ~~~------~~~~~~~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      +..      .......-+++  +|. ++ ++++...+|.+..|++.       +.+.++.+.......    .+...+..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E----gcvvDd~~  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE----GMAADDEY  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE----EEEEETTT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc----eEEEcCCC
Confidence            311      11011222334  664 44 67778889999999883       224456665544322    22333456


Q ss_pred             cEEEEeecCCeEEEEECC-----chheeeccc-CC-ccceEEEEE--cCCCc-eEEEeeecCCeeEEEEee
Q 021459          250 KYIVSGSEDNCVYVWDLQ-----QKTMIQKLD-GH-TDSVISVTC--HPTEN-KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~l~~--~p~~~-~l~~~~~dgd~~v~iw~~  310 (312)
                      ..|..+-++.-|..++..     +.+.+..+. ++ ...+-.|++  .+++. +|+++ .-|+.+..+|+.
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr  261 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDR  261 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEES
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEEC
Confidence            678888888767777754     234444442 22 346788887  55555 45544 445678888875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.02  E-value=0.003  Score=50.79  Aligned_cols=184  Identities=14%  Similarity=0.214  Sum_probs=96.5

Q ss_pred             CCCEEEEeecC-----CcEEEEEcCCCe---EEEE--eeecCcCeEEEEEccCCCEEEEeeCC-----CeEEEEeCCCCc
Q 021459          118 QSNLIVSGSFD-----ESIRIWEVKTGK---CTRV--IRAHSMPVTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEGA  182 (312)
Q Consensus       118 ~~~~l~s~~~d-----g~i~~wd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  182 (312)
                      ++..++.|+.+     ..+.+||+.+++   -...  +.........+.  .++++++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            46677777765     358899988765   2222  111111112222  267777777654     358889988765


Q ss_pred             eeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459          183 CLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS  256 (312)
Q Consensus       183 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (312)
                      ...... .........+.  .+++.++.|+.+     ..+.+||..+.+....-...... .......  .++++++.|+
T Consensus       140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~--~~~~i~v~GG  214 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-SGAGVAL--LNDHIYVVGG  214 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEE--ETTEEEEECC
T ss_pred             EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-ccceEEE--ECCEEEEEeC
Confidence            432211 11111122222  266777777654     46889998887765442111111 1111111  2567778887


Q ss_pred             cC-----CeEEEEECCchh--eeecccCCccceEEEEEcCCCceEEEeeecCC---eeEEEEee
Q 021459          257 ED-----NCVYVWDLQQKT--MIQKLDGHTDSVISVTCHPTENKIASAGLDGD---RTVRVWVQ  310 (312)
Q Consensus       257 ~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd---~~v~iw~~  310 (312)
                      .+     ..+.+||+.+.+  .+..+.........+.+  +++.++.+|.++.   ..|.+|++
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            64     468999987643  22222221112222223  6677788877654   34555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.90  E-value=0.0058  Score=49.16  Aligned_cols=225  Identities=13%  Similarity=0.183  Sum_probs=111.7

Q ss_pred             CCEEEEEeCC----CeEEEEeCCCcceEEEeeeccCC-E-EEEEEccCCCeEEEEcCC-----CeEEEEeCCCCce-eee
Q 021459           34 GTLLASASLD----KTVIIWSASSLALVHRFVGHSEG-I-SDLAWSSDSHYICSASDD-----RTLRIWDARTPFD-CLK  101 (312)
Q Consensus        34 ~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~~-~~~  101 (312)
                      +.+++.||.+    ..+.+||..+.+... +..-..+ . .+++. .++.+++.|+.+     ..+.+||..+..- .+.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455555543    357788877654321 2111110 0 12222 256667777644     3578888765321 111


Q ss_pred             eeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeCC----
Q 021459          102 TLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSHD----  170 (312)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----  170 (312)
                      .+......-..+.  -++..++.|+.++     .+.+||+.+++-...-.  ...... +++. -++++++.|+.+    
T Consensus        94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTT
T ss_pred             CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCC
Confidence            1111111111122  2566777777653     47788988775433211  111111 2222 266777777643    


Q ss_pred             ---CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEE
Q 021459          171 ---GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCIT  241 (312)
Q Consensus       171 ---~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~  241 (312)
                         ..+..||+.+.+....-. .........+.  .++++++.|+.+     ..+.+||..+.+....-........ ..
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~  246 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AG  246 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CE
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-Ce
Confidence               358889988765433211 11111122222  256777777754     4688999988766543221111111 11


Q ss_pred             EEEEccCCcEEEEeecCC-----eEEEEECCch
Q 021459          242 STFSVTNGKYIVSGSEDN-----CVYVWDLQQK  269 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  269 (312)
                      ..  ..++++++.|+.++     .+.+||+.+.
T Consensus       247 ~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          247 VC--AVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EE--EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EE--EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            11  12577888887654     4888888654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.88  E-value=0.0064  Score=49.17  Aligned_cols=158  Identities=6%  Similarity=0.056  Sum_probs=98.4

Q ss_pred             EEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEEeeec-------CcCeEEEEE---ccCCCEEEEee-----------
Q 021459          111 FCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRVIRAH-------SMPVTSVHF---NRDGSLIVSGS-----------  168 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~-----------  168 (312)
                      .+++|++....++.++ ..++|..||...+.........       ...+..+.+   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3678988666766666 7899999998765433332111       113578999   68887777543           


Q ss_pred             --CCCeEEEEeCC---CCceeeEccc-----C-------CCCcEEEEEECCCCCEEEEEecC-CeEEEEEcCCCcEEEEE
Q 021459          169 --HDGTCKIWDAG---EGACLKTLID-----D-------KDPAVSFAKFSPNGKFILVGTLD-STLKLWNYSAGKFLKIY  230 (312)
Q Consensus       169 --~d~~i~iwd~~---~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~  230 (312)
                        .+..+..+|+.   +++.......     .       .......++.+++|+..++++.- +.|..++.........+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~  175 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA  175 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence              25779999998   6655432210     0       11235667899999999988888 88888776543222222


Q ss_pred             EccCC--ceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459          231 TGHTN--KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       231 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (312)
                      .....  ......-....+++..|++....|.+..+|+..
T Consensus       176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            21111  000011122346787777766699999999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.88  E-value=0.0064  Score=48.99  Aligned_cols=225  Identities=7%  Similarity=0.066  Sum_probs=112.7

Q ss_pred             CCEEEEEeC--CCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCC----CeEEEEeCCCCce-eeeeee
Q 021459           34 GTLLASASL--DKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDD----RTLRIWDARTPFD-CLKTLR  104 (312)
Q Consensus        34 ~~~l~t~~~--d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~wd~~~~~~-~~~~~~  104 (312)
                      +.+++.||.  ...+.+||..+.+-...  +......- +++. .++.+++.|+.+    ..+.+||+.+..- .+..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            334555554  35678888876543211  11111111 1222 356677777654    5688888876421 111111


Q ss_pred             cccccEEEEEEecCCCEEEEeecC------CcEEEEEcCCCeEEEEeeec--CcCeEEEEEccCCCEEEEeeC-------
Q 021459          105 GHSDFVFCVNFNPQSNLIVSGSFD------ESIRIWEVKTGKCTRVIRAH--SMPVTSVHFNRDGSLIVSGSH-------  169 (312)
Q Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-------  169 (312)
                      .....-..+.  -+++.++.|+.+      ..+.+||+.+++-...-...  ......+.  -++++++.|+.       
T Consensus        90 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           90 TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTC
T ss_pred             ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcc
Confidence            1111111122  256677777765      45889999887643321111  11111222  26677777764       


Q ss_pred             --CCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEE
Q 021459          170 --DGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCIT  241 (312)
Q Consensus       170 --d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~  241 (312)
                        ...+.+||+.+.+....-. .........+..  ++++++.|+.+     ..+.+||..+.+....-...... ....
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~  242 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG-VTVK  242 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB-SCCE
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc-ccee
Confidence              3458889988775433211 111111222222  56677777653     46889998887654431111111 1111


Q ss_pred             EEEEccCCcEEEEeecC-----CeEEEEECCch
Q 021459          242 STFSVTNGKYIVSGSED-----NCVYVWDLQQK  269 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  269 (312)
                      ...  -++++++.|+.+     ..+.+||+.+.
T Consensus       243 ~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          243 CAA--VGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEE--ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            111  256778888744     56888888664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.87  E-value=0.0066  Score=49.03  Aligned_cols=226  Identities=9%  Similarity=0.084  Sum_probs=112.4

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCcceEEEeeeccCC--EEEEEEccCCCeEEEEcC----C-----CeEEEEeCCCCc
Q 021459           33 DGTLLASASLD----KTVIIWSASSLALVHRFVGHSEG--ISDLAWSSDSHYICSASD----D-----RTLRIWDARTPF   97 (312)
Q Consensus        33 ~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~----d-----~~v~~wd~~~~~   97 (312)
                      ++.+++.||.+    ..+.+||..+.+-.. +..-..+  -.+++. .++.+++.|+.    +     ..+.+||+.+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            55666666632    357888887654322 1111100  012222 25666666665    2     357888876532


Q ss_pred             e-eeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeC
Q 021459           98 D-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        98 ~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      - .+..+......-..+.+  +++.++.|+.+     ..+.+||+.+++-...-.  ........+.+  ++++++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            1 11111111111112222  56677777644     358889998775433211  11111122222  6677777775


Q ss_pred             C-----CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCcee
Q 021459          170 D-----GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKY  238 (312)
Q Consensus       170 d-----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~  238 (312)
                      +     ..+..||+.+.+....-. .........+.+  +++.++.|+.+     ..+.+||..+.+....-...... .
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~  254 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-S  254 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-B
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc-c
Confidence            4     458889988765432111 111111222222  66777777654     56899999887654432111111 1


Q ss_pred             EEEEEEEccCCcEEEEeecC-----CeEEEEECCch
Q 021459          239 CITSTFSVTNGKYIVSGSED-----NCVYVWDLQQK  269 (312)
Q Consensus       239 ~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  269 (312)
                      ......  .++++++.|+.+     ..+.+||+.+.
T Consensus       255 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          255 ALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            111111  256777777754     45777777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.79  E-value=0.0099  Score=48.54  Aligned_cols=230  Identities=11%  Similarity=0.064  Sum_probs=117.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee---eccCCEEEEEEccCCCeEEEEcCCCeEE-EEeCCCCc
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICSASDDRTLR-IWDARTPF   97 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~-~wd~~~~~   97 (312)
                      ...+.++.|+| +..++ ++.++.|.. ....++-.....   .+...+..+.+.+++..++.+. ++.|. -.|--...
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW  154 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNW  154 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSE
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCC
Confidence            34688888876 44444 455665443 333333222222   1234577888877777666654 55442 22321111


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEE-EEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI-WEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      +.  ........+..+.+.+++.+++.+. +|.+.. .|- .++.-..+ ......+..+.+.++++.++ ++.+|.+.+
T Consensus       155 ~~--~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~  229 (327)
T 2xbg_A          155 QA--LVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAF  229 (327)
T ss_dssp             EE--EECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred             EE--eecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEE
Confidence            11  1223445678899999887776654 455543 332 12211111 22345678888999887654 456777776


Q ss_pred             EeCCCCceeeEcccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc---CCceeEEEEEEEccCC
Q 021459          176 WDAGEGACLKTLIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH---TNKKYCITSTFSVTNG  249 (312)
Q Consensus       176 wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  249 (312)
                      .+...++.-..+...   ....+..+.+.+++..++++ .++.|. +....++.-......   ....+.+.  +. .++
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~--~~-~~~  304 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKIL--FF-SPD  304 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEE--EE-ETT
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEE--EE-CCC
Confidence            632222221111111   12235666788877766655 467663 334444432222211   12223332  22 333


Q ss_pred             cEEEEeecCCeEEEEEC
Q 021459          250 KYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~  266 (312)
                       .++.++.+|.|.-++-
T Consensus       305 -~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          305 -QGFILGQKGILLRYVT  320 (327)
T ss_dssp             -EEEEECSTTEEEEECC
T ss_pred             -ceEEEcCCceEEEEcC
Confidence             4666678898776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.79  E-value=0.00018  Score=65.26  Aligned_cols=205  Identities=9%  Similarity=0.015  Sum_probs=109.7

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCc
Q 021459           24 AVSCVKFSNDGTLLASAS-LDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      .+..++|++.+..|+.+. ..+.|+.+++.+    ......+.........|++.+.+ +++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456788888776666553 457888888764    12111111111234567887654 444444556789999876532


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeec-C-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEeeCCCeEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-D-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCK  174 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~  174 (312)
                      . ...+.........++++|.+..|+.... . +.|..+++............-.....|+++|++. ++++-+..+.|.
T Consensus       487 ~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          487 R-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             E-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             e-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            1 1112111223456778886655554443 2 6788777653322212111122356899998654 555555677899


Q ss_pred             EEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          175 IWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .+|+.... .+.+...  .......+++..+ .++++....+.|..+|..+++.+..+.
T Consensus       566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            99986432 2222211  1111112223333 344445566789998887777665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.75  E-value=0.011  Score=47.70  Aligned_cols=223  Identities=10%  Similarity=0.122  Sum_probs=112.0

Q ss_pred             CeEEEEcC--CCeEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecC----CcEEEEEcCCCeEEEEeeec-
Q 021459           77 HYICSASD--DRTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD----ESIRIWEVKTGKCTRVIRAH-  148 (312)
Q Consensus        77 ~~l~~~~~--d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~-  148 (312)
                      .+++.|+.  ...+.+||..+..- .+..+......-..+.  -++..++.|+.+    ..+.+||+.+++-...-... 
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555554  35688888766321 1111111111111122  255677777755    56888999887643321111 


Q ss_pred             -CcCeEEEEEccCCCEEEEeeCC------CeEEEEeCCCCceeeEccc-CCCCcEEEEEECCCCCEEEEEec--------
Q 021459          149 -SMPVTSVHFNRDGSLIVSGSHD------GTCKIWDAGEGACLKTLID-DKDPAVSFAKFSPNGKFILVGTL--------  212 (312)
Q Consensus       149 -~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--------  212 (312)
                       ......+.  -++++++.|+.+      ..+.+||+.+.+....-.. ........+.  .+++.++.|+.        
T Consensus        91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCE
T ss_pred             cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccc
Confidence             11112222  267777777765      4588899887654332111 1111112222  26667777753        


Q ss_pred             -CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCchh--eeecccCCccceEE
Q 021459          213 -DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQKT--MIQKLDGHTDSVIS  284 (312)
Q Consensus       213 -d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~  284 (312)
                       ...+.+||..+.+....-...... .......  .++++++.|+.+     ..+.+||+.+.+  .+..+.........
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEAR-KNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCC-BSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             ccceEEEeCCCCCeEEECCCccchh-hcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence             345889999887654432111111 1111111  256777777654     458899987642  33333222222233


Q ss_pred             EEEcCCCceEEEeeecCC---eeEEEEee
Q 021459          285 VTCHPTENKIASAGLDGD---RTVRVWVQ  310 (312)
Q Consensus       285 l~~~p~~~~l~~~~~dgd---~~v~iw~~  310 (312)
                      +.+  ++..++.+|.++.   ..+..|++
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            333  6677888876654   34555554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.75  E-value=0.012  Score=48.50  Aligned_cols=224  Identities=13%  Similarity=0.096  Sum_probs=114.0

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee---cccccEEEEEEecC---CCEEEEeec-C-----CcEE
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQ---SNLIVSGSF-D-----ESIR  132 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~i~  132 (312)
                      .....++|.|+|+++++ ..++.|.+++ ......+..+.   ........++++|+   +..|+.+.. .     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            34678999999985555 5669999998 22111121111   11245678999998   555544433 2     5688


Q ss_pred             EEEcCCCeE---EEE---eee---cCcCeEEEEEccCCCEEEEeeC-------------CCeEEEEeCCCCceee-----
Q 021459          133 IWEVKTGKC---TRV---IRA---HSMPVTSVHFNRDGSLIVSGSH-------------DGTCKIWDAGEGACLK-----  185 (312)
Q Consensus       133 ~wd~~~~~~---~~~---~~~---~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~~~-----  185 (312)
                      .++...++.   ...   +..   .......++|.|+|.+.++.+.             .+.|.-++... ....     
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~  187 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL  187 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence            888764321   111   221   0112368999999987776432             14555555432 1000     


Q ss_pred             -------EcccCCCCcEEEEEECC-CCCEEEEEecCCe--------EEEEEcCCCc------------------EEEEEE
Q 021459          186 -------TLIDDKDPAVSFAKFSP-NGKFILVGTLDST--------LKLWNYSAGK------------------FLKIYT  231 (312)
Q Consensus       186 -------~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~--------i~v~d~~~~~------------------~~~~~~  231 (312)
                             ++....-.....++++| ++.++++-...+.        |.+.  ..+.                  .+..+.
T Consensus       188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                   00000001123356888 5665554332222        3322  2221                  001110


Q ss_pred             ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe------eecccCCccceEEEEEcCCCceEEEee
Q 021459          232 GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM------IQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .+ .  ......+  .++.++++.-..+.|...++.....      ...+-.-...+..+++.|+|..+++..
T Consensus       266 ~~-~--ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 QG-F--PPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TC-C--CEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CC-C--CCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            01 1  1122222  3577777777778888887754321      112212234689999999997776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.68  E-value=0.013  Score=46.98  Aligned_cols=184  Identities=16%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             CCCEEEEeecC-----CcEEEEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCceee
Q 021459          118 QSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGACLK  185 (312)
Q Consensus       118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~  185 (312)
                      ++..++.|+.+     ..+.+||..+++-...-..  .......+.  -++++++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56677777755     3588899887764332111  111112222  2667777777553     47788988765433


Q ss_pred             Ecc-cCCCCcEEEEEECCCCCEEEEEecC-------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459          186 TLI-DDKDPAVSFAKFSPNGKFILVGTLD-------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE  257 (312)
Q Consensus       186 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  257 (312)
                      .-. .........+.  .+++.++.|+.+       ..+.+||..+.+....-...... .......  .++++++.|+.
T Consensus       139 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~--~~~~iyv~GG~  213 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGV--LNNLLYAVGGH  213 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEE--ETTEEEEECCB
T ss_pred             cCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEE--ECCEEEEECCC
Confidence            211 11111112222  256677777542       45889998887665432111111 1111111  25778888876


Q ss_pred             C-----CeEEEEECCchh--eeecccCCccceEEEEEcCCCceEEEeeecCC---eeEEEEee
Q 021459          258 D-----NCVYVWDLQQKT--MIQKLDGHTDSVISVTCHPTENKIASAGLDGD---RTVRVWVQ  310 (312)
Q Consensus       258 d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd---~~v~iw~~  310 (312)
                      +     ..+.+||+.+.+  .+..+.........+.+  ++..++.+|.++.   ..+.+|++
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence            4     468899987643  22222211111122222  6677788876643   24666654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.67  E-value=0.015  Score=47.08  Aligned_cols=212  Identities=10%  Similarity=0.085  Sum_probs=105.1

Q ss_pred             eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec----C-------CcEEEEEcCCCeEEEEee
Q 021459           78 YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF----D-------ESIRIWEVKTGKCTRVIR  146 (312)
Q Consensus        78 ~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d-------g~i~~wd~~~~~~~~~~~  146 (312)
                      +++.|+  ..+..||..+..-....+..............++..++.|+.    +       ..+..||..+++-... .
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-P   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-C
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-C
Confidence            344555  568889987653222222111112222223356778888874    1       1277889887754321 1


Q ss_pred             ecCcCe--EEEEEccCCCEEEEeeCC--------CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEec-C-
Q 021459          147 AHSMPV--TSVHFNRDGSLIVSGSHD--------GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTL-D-  213 (312)
Q Consensus       147 ~~~~~v--~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-d-  213 (312)
                      .-..+-  .+++. -++++++.|+.+        ..+.+||+.+.+...... .........+  ..+++.++.|+. + 
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCC
Confidence            111111  11222 266777777742        458889988765432111 1111111222  246677777776 2 


Q ss_pred             ----CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC-----eEEEEECCchh--eeecccCCccce
Q 021459          214 ----STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN-----CVYVWDLQQKT--MIQKLDGHTDSV  282 (312)
Q Consensus       214 ----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~--~~~~~~~h~~~v  282 (312)
                          ..+.+||..+.+....-........ .....  .++++++.|+.++     .+.+||+.+.+  .+..+.......
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  237 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL  237 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhc-eEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence                4688999888765443211111111 11111  2567778777654     58889987642  232222111122


Q ss_pred             EEEEEcCCCceEEEeeec
Q 021459          283 ISVTCHPTENKIASAGLD  300 (312)
Q Consensus       283 ~~l~~~p~~~~l~~~~~d  300 (312)
                      ..+.+  ++..++.||.+
T Consensus       238 ~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          238 SLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEEEE--TTEEEEEEEEE
T ss_pred             eEEEE--CCEEEEECCcc
Confidence            22223  56777888764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.63  E-value=0.032  Score=49.94  Aligned_cols=227  Identities=5%  Similarity=-0.101  Sum_probs=130.6

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459           36 LLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDCLKTLRGHSDFVFCV  113 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~  113 (312)
                      +|+.+ ..+.|+..++.+......+. ..-..+..++|++.+..|+.+ ..++.|..+++..... .............+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            44443 34678888887654322221 123467799999976655544 4568888888764321 11121111234567


Q ss_pred             EEecCCCEE-EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee--CCCeEEEEeCCCCceeeEcccC
Q 021459          114 NFNPQSNLI-VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS--HDGTCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       114 ~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~  190 (312)
                      ++++.+..| ++-...+.|.+.++............-.....+++.|....|....  ..+.|...++.... ...+.. 
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~-  163 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP-  163 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-
Confidence            787765544 4444567899999865433222222334468999998544444433  25677777765433 222222 


Q ss_pred             CCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459          191 KDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  269 (312)
                      .......++++++++.|..+ ...+.|..+|+..... ..+.........+.  ..  .+.++.+-...+.|...|..++
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~gla--v~--~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLT--QY--QDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEE--EE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEE--EE--CCEEEEecCCCCEEEEEECCCC
Confidence            23445667889877666665 4567899999865443 33333333333332  22  3556666667888988887555


Q ss_pred             he
Q 021459          270 TM  271 (312)
Q Consensus       270 ~~  271 (312)
                      +.
T Consensus       239 ~~  240 (628)
T 4a0p_A          239 QN  240 (628)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.55  E-value=0.022  Score=45.89  Aligned_cols=184  Identities=14%  Similarity=0.157  Sum_probs=94.5

Q ss_pred             CCCEEEEeec----C-----CcEEEEEcCCCeEEEEe--eecCcCeEEEEEccCCCEEEEeeCC-----CeEEEEeCCCC
Q 021459          118 QSNLIVSGSF----D-----ESIRIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEG  181 (312)
Q Consensus       118 ~~~~l~s~~~----d-----g~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  181 (312)
                      ++..++.|+.    +     ..+.+||+.+++-...-  .........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5567777765    2     46888998877543221  111111122222  66777777643     35788998876


Q ss_pred             ceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          182 ACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       182 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      +...... .........+.+  ++..++.|+.+     ..+.+||..+.+....-...... .......  .++++++.|
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~--~~~~iyv~G  222 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-SGAGVCV--LHNCIYAAG  222 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEE--ETTEEEEEC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-ccceEEE--ECCEEEEEe
Confidence            5432211 111111222222  66777777654     46889998877654331111111 1111111  257777888


Q ss_pred             ecC-----CeEEEEECCchhe--eecccCCccceEEEEEcCCCceEEEeeecCC---eeEEEEee
Q 021459          256 SED-----NCVYVWDLQQKTM--IQKLDGHTDSVISVTCHPTENKIASAGLDGD---RTVRVWVQ  310 (312)
Q Consensus       256 ~~d-----g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd---~~v~iw~~  310 (312)
                      +.+     ..+.+||+.+.+-  +..+.........+.+  ++..++.+|.++.   ..+.++++
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence            764     5689999876432  2222221112222222  5677788876653   24555554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.50  E-value=0.027  Score=45.63  Aligned_cols=207  Identities=13%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec----CC-------cEEEEEcCCCeEEEEe--eecCcCeE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF----DE-------SIRIWEVKTGKCTRVI--RAHSMPVT  153 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg-------~i~~wd~~~~~~~~~~--~~~~~~v~  153 (312)
                      .+..||..+..-....+..............++..++.|+.    ++       .+..||..+++-...-  ...... .
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-F  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-C
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-c
Confidence            37788887643222112111111122223456677777773    11       1778888876543221  111111 1


Q ss_pred             EEEEccCCCEEEEeeCC-------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec------CCeEEEEE
Q 021459          154 SVHFNRDGSLIVSGSHD-------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL------DSTLKLWN  220 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v~d  220 (312)
                      +++. -++++++.|+.+       ..+.+||+.+.+....-. ...+.........+++.++.|+.      ...+.+||
T Consensus       104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEc
Confidence            2222 266777777754       247788988765443211 11111111112246677777764      24589999


Q ss_pred             cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCchh--eeecccCCccceEEEEEcCCCce
Q 021459          221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQKT--MIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      ..+.+....-....... ......  .++++++.|+.+     ..+.+||+.+.+  .+..+.........+.+  ++..
T Consensus       182 ~~~~~W~~~~~~p~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  256 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRS-MFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSL  256 (318)
T ss_dssp             TTTTEEEEECCCSSCCB-SCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCCEEEECCCCCCCcc-cceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEE
Confidence            98877654321111111 111111  256777777643     357788886543  23223222112222222  5677


Q ss_pred             EEEeeecC
Q 021459          294 IASAGLDG  301 (312)
Q Consensus       294 l~~~~~dg  301 (312)
                      ++.||.++
T Consensus       257 ~v~GG~~~  264 (318)
T 2woz_A          257 YAIGGFAM  264 (318)
T ss_dssp             EEECCBCC
T ss_pred             EEECCeec
Confidence            77777653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.46  E-value=0.038  Score=46.43  Aligned_cols=235  Identities=11%  Similarity=0.184  Sum_probs=138.7

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc-
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-  107 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-  107 (312)
                      -.+|..+.||--. ...+.|+|+++...+....- .+.|.-=.|-.+.. |+-. .+..|+-|++.....+.+.+..|. 
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lV-T~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEE-CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEE-cCCeeEEecccCCCCchhheecchh
Confidence            3567677666544 67999999998877665543 34555556655544 3333 366899999975445555555443 


Q ss_pred             ---ccEEEEEEecCCCEEEEeec-------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC---CEEEEeeC---CC
Q 021459          108 ---DFVFCVNFNPQSNLIVSGSF-------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG---SLIVSGSH---DG  171 (312)
Q Consensus       108 ---~~v~~~~~~~~~~~l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~  171 (312)
                         ..|..-..+++.++++-.+.       .|.+.+|..+.+. .+.+++|......+...-+.   .++.-+..   .+
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence               24555556778887654332       3678899987654 45566665444333322111   13333333   26


Q ss_pred             eEEEEeCCCC---c-----eeeEc-ccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          172 TCKIWDAGEG---A-----CLKTL-IDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       172 ~i~iwd~~~~---~-----~~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      .+.+.++...   .     ....+ ...   .+-++ .+..++.-..+..-+.-|.+++||+.++..+..-.-..+....
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence            8888887543   1     01111 111   12223 3457777778888899999999999999987665544443322


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                        .+.. ....=++.....|.|.--.+++...+
T Consensus       306 --t~~~-~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          306 --TAPH-EATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             --EEEE-TTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             --eccc-CCCCcEEEEccCceEEEEEEccccch
Confidence              2222 23334555668888887777655443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.41  E-value=0.1  Score=50.18  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             ccceEEEEECCC------CCEEEEEeC-CCeEEEEeCCCcceEEEeeec-cCCEEEEEEcc--CCCeEEEEcCCCeEEEE
Q 021459           22 SRAVSCVKFSND------GTLLASASL-DKTVIIWSASSLALVHRFVGH-SEGISDLAWSS--DSHYICSASDDRTLRIW   91 (312)
Q Consensus        22 ~~~v~~~~~s~~------~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~v~~w   91 (312)
                      .+.|.|+++.|.      +++++.|.. |++++|+++.+.+.+....-. .....++.+..  ...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            568999999863      368888886 999999999887665443211 12345554432  34588899999988666


Q ss_pred             eCC
Q 021459           92 DAR   94 (312)
Q Consensus        92 d~~   94 (312)
                      .+.
T Consensus       633 ~~d  635 (1158)
T 3ei3_A          633 GLN  635 (1158)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.39  E-value=0.037  Score=44.72  Aligned_cols=224  Identities=8%  Similarity=0.073  Sum_probs=109.6

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEE-EeeeccCCEEEEEEccCCCeEEEEcC-----C------CeEEEEeCCCCc-eeeee
Q 021459           36 LLASASLDKTVIIWSASSLALVH-RFVGHSEGISDLAWSSDSHYICSASD-----D------RTLRIWDARTPF-DCLKT  102 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~v~~wd~~~~~-~~~~~  102 (312)
                      +++.|+  ..+.+||..+.+-.. .+.........-+...++.+++.|+.     .      ..+..||..+.. ..+..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  578889988765422 11111111222223346777777763     1      126778876532 11111


Q ss_pred             eecccccEEEEEEecCCCEEEEeecC--------CcEEEEEcCCCeEEEEeeecCcCe-EEEEEccCCCEEEEeeC-C--
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFD--------ESIRIWEVKTGKCTRVIRAHSMPV-TSVHFNRDGSLIVSGSH-D--  170 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~-d--  170 (312)
                      +...... .+++. -++..++.|+.+        ..+.+||+.+++-...-....... .+++. .++++++.|+. +  
T Consensus        85 ~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred             CCcchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence            1110011 11121 245667777642        358899998775332211111111 12222 36677777776 2  


Q ss_pred             ---CeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCC-----eEEEEEcCCCcEEEEEEccCCceeEEE
Q 021459          171 ---GTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDS-----TLKLWNYSAGKFLKIYTGHTNKKYCIT  241 (312)
Q Consensus       171 ---~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~  241 (312)
                         ..+.+||+.+.+...... .........+.  -+++.++.|+.++     .+.+||..+.+....-........ ..
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~  238 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS-LS  238 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS-CE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc-ee
Confidence               468899988765433211 11111112222  2667777777654     588899888766544221111111 11


Q ss_pred             EEEEccCCcEEEEeecCC--------------eEEEEECCch
Q 021459          242 STFSVTNGKYIVSGSEDN--------------CVYVWDLQQK  269 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~  269 (312)
                      ...  .++++++.|+.++              .+.+||+.+.
T Consensus       239 ~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          239 LVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            111  2567777777542              3667887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.34  E-value=0.03  Score=42.45  Aligned_cols=175  Identities=12%  Similarity=0.029  Sum_probs=93.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcce-----EEEeeec--cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-----e
Q 021459           32 NDGTLLASASLDKTVIIWSASSLAL-----VHRFVGH--SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-----C   99 (312)
Q Consensus        32 ~~~~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-----~   99 (312)
                      |.+.+|+....| +++.=.......     .....++  =..+..++|+|+|.+.++  .+|.++-.+..+...     .
T Consensus         2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence            345567777777 665544433221     1112223  236779999999886665  677766655433110     0


Q ss_pred             eeee--ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE------EEe-eecCcCeEEEEEccCCCEEEEeeCC
Q 021459          100 LKTL--RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT------RVI-RAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus       100 ~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      -..+  .+-.. -.++.|.|++.+.++  .||.|+-++..+....      ..+ ..-=..+..+.+.|+|.+.++.  |
T Consensus        79 ~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           79 AKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             CEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred             ccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence            0111  01111 357889999988877  5698887775332110      011 1011357889999999877766  7


Q ss_pred             CeEEEEeCCCCce-----eeEccc-CCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459          171 GTCKIWDAGEGAC-----LKTLID-DKDPAVSFAKFSPNGKFILVGTLDSTL  216 (312)
Q Consensus       171 ~~i~iwd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
                      +.+.-.....+..     ...... ..-.....+.+++++.+.++.  ++.+
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            7654333222110     011111 112234556688888766655  6644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.27  E-value=0.032  Score=45.97  Aligned_cols=179  Identities=11%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             CCCEEEEeec-C---------CcEEEEEcCCCeEEEEeeec-CcCe-EEEEEccCCCEEEEeeCC---------------
Q 021459          118 QSNLIVSGSF-D---------ESIRIWEVKTGKCTRVIRAH-SMPV-TSVHFNRDGSLIVSGSHD---------------  170 (312)
Q Consensus       118 ~~~~l~s~~~-d---------g~i~~wd~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~l~~~~~d---------------  170 (312)
                      ++.+++.|+. +         ..+.+||+.+.+-...-... .... .++.. .++++++.|+.+               
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~  143 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAG  143 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcC
Confidence            4567777776 2         46889999887543321111 1111 12222 467777888754               


Q ss_pred             ------------------------CeEEEEeCCCCceeeE--cccCCCCcEEEEEECCCCCEEEEEec------CCeEEE
Q 021459          171 ------------------------GTCKIWDAGEGACLKT--LIDDKDPAVSFAKFSPNGKFILVGTL------DSTLKL  218 (312)
Q Consensus       171 ------------------------~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v  218 (312)
                                              ..+.+||+.+.+....  +..........+.  -++++++.|+.      ...+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~  221 (357)
T 2uvk_A          144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--KGDKTWLINGEAKPGLRTDAVFE  221 (357)
T ss_dssp             TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE--ETTEEEEECCEEETTEECCCEEE
T ss_pred             CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE--ECCEEEEEeeecCCCcccCceEE
Confidence                                    5788999887654332  1111111122222  25667777653      345777


Q ss_pred             EEc--CCCcEEEEEEccCCc-eeEEEEEEEccCCcEEEEeecC----------------------CeEEEEECCch--he
Q 021459          219 WNY--SAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSED----------------------NCVYVWDLQQK--TM  271 (312)
Q Consensus       219 ~d~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~--~~  271 (312)
                      ||+  .+.+....-...... .....+  ...++++++.|+.+                      ..+.+||+.+.  +.
T Consensus       222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~  299 (357)
T 2uvk_A          222 LDFTGNNLKWNKLAPVSSPDGVAGGFA--GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK  299 (357)
T ss_dssp             EECC---CEEEECCCSSTTTCCBSCEE--EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred             EEecCCCCcEEecCCCCCCcccccceE--EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence            876  444433321111111 111111  11356777777632                      25778998754  23


Q ss_pred             eecccCCccceEEEEEcCCCceEEEeeecCCe
Q 021459          272 IQKLDGHTDSVISVTCHPTENKIASAGLDGDR  303 (312)
Q Consensus       272 ~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~  303 (312)
                      +..+........++.  .+++.++.||.++++
T Consensus       300 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          300 SGELSQGRAYGVSLP--WNNSLLIIGGETAGG  329 (357)
T ss_dssp             EEECSSCCBSSEEEE--ETTEEEEEEEECGGG
T ss_pred             CCCCCCCcccceeEE--eCCEEEEEeeeCCCC
Confidence            333332222222222  367888889977643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.15  E-value=0.078  Score=43.69  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEee---eccCCEEEEEEccC---CCeEEEEcC-C-----CeE
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFV---GHSEGISDLAWSSD---SHYICSASD-D-----RTL   88 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~v   88 (312)
                      ..-..++|.|+|+++++ ..++.|++++  .++.  +..+.   ........|+++|+   +..|..+.. .     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34568999999996665 4569999988  3332  22111   11346789999998   555554432 2     567


Q ss_pred             EEEeCCCC----ce-eeeeee---cccccEEEEEEecCCCEEEEee
Q 021459           89 RIWDARTP----FD-CLKTLR---GHSDFVFCVNFNPQSNLIVSGS  126 (312)
Q Consensus        89 ~~wd~~~~----~~-~~~~~~---~~~~~v~~~~~~~~~~~l~s~~  126 (312)
                      ..++....    .+ .+..+.   +.......++|.||+.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            77776532    11 112122   1111235789999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.15  E-value=0.08  Score=43.69  Aligned_cols=229  Identities=8%  Similarity=0.032  Sum_probs=116.0

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee---cccccEEEEEEecC---CCEEEEeec----C----Cc
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQ---SNLIVSGSF----D----ES  130 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----g~  130 (312)
                      .....++|.|+|+++++ ..++.|++++.. +.+.+..+.   ........++++|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            44678999999985554 566999988743 222222211   11245678999997   445544332    2    56


Q ss_pred             EEEEEcCCC--e---EEEE---eee-cCcCeEEEEEccCCCEEEEeeCC-------------CeEEEEeCCCCc------
Q 021459          131 IRIWEVKTG--K---CTRV---IRA-HSMPVTSVHFNRDGSLIVSGSHD-------------GTCKIWDAGEGA------  182 (312)
Q Consensus       131 i~~wd~~~~--~---~~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~------  182 (312)
                      |..|+...+  .   ....   +.. .......++|.|||.++++.+..             |.|.-++....-      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776644  1   1111   221 11124678999999877764432             445555543210      


Q ss_pred             -eeeEcccCCCCcEEEEEECC-CCCEEEEEecCC---eEEEEEcCCCcE----------------EEEEEccCCceeEEE
Q 021459          183 -CLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDS---TLKLWNYSAGKF----------------LKIYTGHTNKKYCIT  241 (312)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~---~i~v~d~~~~~~----------------~~~~~~~~~~~~~~~  241 (312)
                       ....+.... ....-++|+| ++.++++-...+   .|.+..  .+..                ...+...........
T Consensus       187 ~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          187 PNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             TTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence             000000001 1123466888 566555432221   233321  1110                000110000111222


Q ss_pred             EEEE------ccCCcEEEEeecCCeEEEEECCchh-ee--ec-ccCCccceEEEEEcCCCceEEEee
Q 021459          242 STFS------VTNGKYIVSGSEDNCVYVWDLQQKT-MI--QK-LDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       242 ~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~--~~-~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      ..+.      ..++.++++.-..+.|...++.... ..  .. +.+....+..+++.|+|..+++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            2221      1457777777778889888887532 21  22 222245689999999997666653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.04  E-value=0.1  Score=42.84  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE--EEe----eeccCCEEEEEEccC---CCeEE
Q 021459           10 KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV--HRF----VGHSEGISDLAWSSD---SHYIC   80 (312)
Q Consensus        10 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~   80 (312)
                      .+......+...-..-..++|.|+|+++++-...|.|++++..+++..  ..+    .........|+++|+   +..|.
T Consensus        19 ~~~~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           19 GSVKVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             CCEEEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             CCCceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence            344555555555566779999999998888765899999876554432  111    122456789999995   33444


Q ss_pred             EE---cCCCeEEEEeCCCC---------cee-eeeee-cccccEEEEEEecCCCEEEEee
Q 021459           81 SA---SDDRTLRIWDARTP---------FDC-LKTLR-GHSDFVFCVNFNPQSNLIVSGS  126 (312)
Q Consensus        81 ~~---~~d~~v~~wd~~~~---------~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~  126 (312)
                      ..   ..+..|.-|.....         .+. +..+. ........+.|.||+.++++.+
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            32   23445555554331         111 11221 1112345689999998877754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.99  E-value=0.11  Score=42.63  Aligned_cols=236  Identities=10%  Similarity=0.027  Sum_probs=107.3

Q ss_pred             CCCEEEEEeCC-CeEEEEeCCC-cceEEEeeecc--CC-EEEEEEccCCCeEEEEcC-C---------CeEEEEeCCCCc
Q 021459           33 DGTLLASASLD-KTVIIWSASS-LALVHRFVGHS--EG-ISDLAWSSDSHYICSASD-D---------RTLRIWDARTPF   97 (312)
Q Consensus        33 ~~~~l~t~~~d-~~i~vw~~~~-~~~~~~~~~~~--~~-v~~~~~~~~~~~l~~~~~-d---------~~v~~wd~~~~~   97 (312)
                      ++.+.+.||.+ ..+.++|... ......+..-.  .. -.+++. -++.+++.|+. +         ..+.+||+.+..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            56666666543 4678888763 11222221111  11 112222 25666666665 2         358888887642


Q ss_pred             e-eeeeeecccccEEEEEEecCCCEEEEeecC---------------------------------------CcEEEEEcC
Q 021459           98 D-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---------------------------------------ESIRIWEVK  137 (312)
Q Consensus        98 ~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------------------------------g~i~~wd~~  137 (312)
                      - .+..+......-.++.. .++++++.|+.+                                       ..+.+||+.
T Consensus        98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             EEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            1 11111101111112222 456777777754                                       468899998


Q ss_pred             CCeEEEEeeecC-cCe-EEEEEccCCCEEEEeeC------CCeEEEEeC--CCCceeeEc-ccCCCCcEEEEEECCCCCE
Q 021459          138 TGKCTRVIRAHS-MPV-TSVHFNRDGSLIVSGSH------DGTCKIWDA--GEGACLKTL-IDDKDPAVSFAKFSPNGKF  206 (312)
Q Consensus       138 ~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~~~~~------d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  206 (312)
                      +.+-...-.... ... .+++. -++++++.|+.      ...+..||+  .+.+..... ...........+...+++.
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  255 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL  255 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred             CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence            875433221111 111 22222 25667777664      335667776  444332211 0111111111112235677


Q ss_pred             EEEEecC----------------------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC-----
Q 021459          207 ILVGTLD----------------------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN-----  259 (312)
Q Consensus       207 l~~~~~d----------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----  259 (312)
                      ++.|+.+                      ..+.+||..+.+....-.......... +.  ..++++++.|+.++     
T Consensus       256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~--~~~~~i~v~GG~~~~~~~~  332 (357)
T 2uvk_A          256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV-SL--PWNNSLLIIGGETAGGKAV  332 (357)
T ss_dssp             EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE-EE--EETTEEEEEEEECGGGCEE
T ss_pred             EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce-eE--EeCCEEEEEeeeCCCCCEe
Confidence            7777632                      257789988776544322221111111 11  13567778887543     


Q ss_pred             -eEEEEECCchheeec
Q 021459          260 -CVYVWDLQQKTMIQK  274 (312)
Q Consensus       260 -~i~iwd~~~~~~~~~  274 (312)
                       .|.++++.+++.+..
T Consensus       333 ~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          333 TDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEEEEEC-CCSCEEE
T ss_pred             eeEEEEEEcCcEeEee
Confidence             355557766555433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.11  Score=42.34  Aligned_cols=190  Identities=12%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeecc-CCEEEEEEc--c-CCCeEEEE-cCCCeEEEEeCCCCceeeeeeec---
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHS-EGISDLAWS--S-DSHYICSA-SDDRTLRIWDARTPFDCLKTLRG---  105 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~l~~~-~~d~~v~~wd~~~~~~~~~~~~~---  105 (312)
                      +.+++.++.||.|.-.|..+++.+.++.... .++....-.  + ++..++.. ..||.|..++..++.... ...-   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccc
Confidence            3468888999999999999999888776431 122211100  1 22333333 589999999987653321 1110   


Q ss_pred             -ccccEEE---EEE-e----cCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc--C-----eEEEEEc-----cCCCEE
Q 021459          106 -HSDFVFC---VNF-N----PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM--P-----VTSVHFN-----RDGSLI  164 (312)
Q Consensus       106 -~~~~v~~---~~~-~----~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~-----v~~~~~~-----~~~~~l  164 (312)
                       ...++..   ... .    ..+..+++++.+|.+...|+++|+.+..+.....  .     ..|....     ..+..+
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1111111   000 0    1456789999999999999999998877753210  0     0011110     123456


Q ss_pred             EEeeCCCeEEEEeCCCCceeeEc--ccCCCCcEE-----EEEECCCCCEEEEEecCCeEEEEEcCCCcEE
Q 021459          165 VSGSHDGTCKIWDAGEGACLKTL--IDDKDPAVS-----FAKFSPNGKFILVGTLDSTLKLWNYSAGKFL  227 (312)
Q Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  227 (312)
                      +.+..+..+.+.+ ++++ .-.+  .......+.     .-..+.++.+ ++++.||.|.-+|..+|+.+
T Consensus       169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~  235 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR  235 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred             EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence            6666666666655 3332 1000  000000000     0000123454 44677888888888777754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.97  E-value=0.12  Score=42.56  Aligned_cols=154  Identities=11%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             CEEEEEEccCCCeEEEE------------cCCCeEEEEeCCCCceeee--eeec-----ccccEEEEEEec--CCC-EEE
Q 021459           66 GISDLAWSSDSHYICSA------------SDDRTLRIWDARTPFDCLK--TLRG-----HSDFVFCVNFNP--QSN-LIV  123 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~------------~~d~~v~~wd~~~~~~~~~--~~~~-----~~~~v~~~~~~~--~~~-~l~  123 (312)
                      ...+++..|+|..++++            ..+|.|.++|..++.....  .+.+     ..-.-.-+.+.+  +++ .|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34466677776554444            2688999999874211111  1222     112345566555  454 344


Q ss_pred             Eee-c--CCcEEEEEcCCC-eEEE---Eeeec-CcCeEEEEEccCCCEEEEee-----------------CCCeEEEEeC
Q 021459          124 SGS-F--DESIRIWEVKTG-KCTR---VIRAH-SMPVTSVHFNRDGSLIVSGS-----------------HDGTCKIWDA  178 (312)
Q Consensus       124 s~~-~--dg~i~~wd~~~~-~~~~---~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~  178 (312)
                      .+. .  +.+|.+|++..+ ....   .+... -...+.+.+.++|.+.++..                 ..|.+.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            442 2  457888877543 2222   22221 13468899999998777653                 1245555655


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCC
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSA  223 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~  223 (312)
                      .  + ...... .-....-++|+||++.|.++ +..+.|..|++..
T Consensus       211 ~--~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 N--D-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T--C-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             C--e-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            3  2 222211 12234567899999887776 4578999999864

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.93  E-value=0.12  Score=41.80  Aligned_cols=224  Identities=11%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEEE-eeeccCCEEEEEEccCCCeEEEEcC----CC-------eEEEEeCCCCce-eeee
Q 021459           36 LLASASLDKTVIIWSASSLALVHR-FVGHSEGISDLAWSSDSHYICSASD----DR-------TLRIWDARTPFD-CLKT  102 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~v~~wd~~~~~~-~~~~  102 (312)
                      +++.|+.  .+.+||..+.+-... ..........-+...++.+++.|+.    ++       .+..||..+..- .+..
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  478888877654321 1110111122223446777777773    11       267788765321 1111


Q ss_pred             eecccccEEEEEEecCCCEEEEeecC-------CcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEEEeeC-----
Q 021459          103 LRGHSDFVFCVNFNPQSNLIVSGSFD-------ESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIVSGSH-----  169 (312)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~-----  169 (312)
                      +...... .++.. -++..++.|+.+       ..+.+||+.+.+-...-...... -.+++. .++++++.|+.     
T Consensus        96 ~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred             CCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence            1111111 11211 256677777754       24788898877543321111000 012222 46777777764     


Q ss_pred             -CCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459          170 -DGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITS  242 (312)
Q Consensus       170 -d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  242 (312)
                       ...+.+||+.+.+...... .........+.  -+++.++.|+.+     ..+.+||..+.+....-...... .....
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~  249 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER-SSISL  249 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC-BSCEE
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc-cceEE
Confidence             2358899998776433211 11111112222  256777777643     35778998877654432111111 11111


Q ss_pred             EEEccCCcEEEEeecC--------------CeEEEEECCch
Q 021459          243 TFSVTNGKYIVSGSED--------------NCVYVWDLQQK  269 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~  269 (312)
                      .  ..++++++.|+.+              ..+.+||+.+.
T Consensus       250 ~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          250 V--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             E--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             E--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            1  1356777777654              34677777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.92  E-value=0.17  Score=49.16  Aligned_cols=234  Identities=12%  Similarity=0.190  Sum_probs=123.6

Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc---
Q 021459           30 FSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH---  106 (312)
Q Consensus        30 ~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~---  106 (312)
                      .+|..+.||-- ....+.|+|+++...+....- ...|.-=.|-.+..+-++  .+..|+.|++.....+.+.+..|   
T Consensus        73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lV--T~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEe-cCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEE--cCCeEEEeccCCCCccHHHHhcchhc
Confidence            45656655543 367899999988766554433 345554566555443333  25689999996533344433333   


Q ss_pred             -cccEEEEEEecCCCEEEEee-------cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc--cC-CCEEEEeeC---CCe
Q 021459          107 -SDFVFCVNFNPQSNLIVSGS-------FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN--RD-GSLIVSGSH---DGT  172 (312)
Q Consensus       107 -~~~v~~~~~~~~~~~l~s~~-------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~~~~~---d~~  172 (312)
                       ...|..-.-+++.++++..|       -.|.+.+|..+.+. .+.+.+|......+...  +. ..++.-+..   .+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             23344455577777765433       34788999877553 33445554333222221  11 112222211   267


Q ss_pred             EEEEeCCCC---c--eeeE----cccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEE
Q 021459          173 CKIWDAGEG---A--CLKT----LIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCI  240 (312)
Q Consensus       173 i~iwd~~~~---~--~~~~----~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  240 (312)
                      +.+.++...   .  ..+.    +...   .+-++ .+..++.-..+..-+.-|.+++||+.++..+..-.-...... +
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF-~  305 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF-V  305 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE-E
Confidence            888887542   1  0000    0000   11122 244677777788888999999999999987643322222211 1


Q ss_pred             EEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                      + +...+.+ =++.....|.|.--.+.....+
T Consensus       306 ~-~~~~~~~-g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          306 T-APHEATA-GIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             e-ccCCCCC-ceEEEcCCceEEEEEEccchhh
Confidence            1 1121222 3444557777766666554433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.15  Score=42.76  Aligned_cols=110  Identities=18%  Similarity=0.110  Sum_probs=73.8

Q ss_pred             cEEEEEEecCCCEEEEeecCCcEEEEEcCCCe------------EEEEeee------cCcCeEEEEEccC---CCEEEEe
Q 021459          109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK------------CTRVIRA------HSMPVTSVHFNRD---GSLIVSG  167 (312)
Q Consensus       109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~l~~~  167 (312)
                      .+..+..+|+|++|+..+. ..|.+-.+..+.            ..+.+..      ...+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4677889999999888764 468888876321            1122222      2467999999994   5689999


Q ss_pred             eCCCeEEEEeCCCCce-eeEcc--------cCCCCcEEEEEECCCCCEEEEEe--cCCeEEEE
Q 021459          168 SHDGTCKIWDAGEGAC-LKTLI--------DDKDPAVSFAKFSPNGKFILVGT--LDSTLKLW  219 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~v~  219 (312)
                      ..|+.|++||+..... ...+.        ......+..++|+.++-.|.+.+  ..|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999976221 00110        11124567788999887777654  77887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.87  E-value=0.25  Score=44.81  Aligned_cols=195  Identities=13%  Similarity=0.137  Sum_probs=100.7

Q ss_pred             cCCCeEEEEcCC----CeEEEEeCCCCce-eee-e-----eecccccEEEEEEec-CCCEEEEeecCC------cEEEEE
Q 021459           74 SDSHYICSASDD----RTLRIWDARTPFD-CLK-T-----LRGHSDFVFCVNFNP-QSNLIVSGSFDE------SIRIWE  135 (312)
Q Consensus        74 ~~~~~l~~~~~d----~~v~~wd~~~~~~-~~~-~-----~~~~~~~v~~~~~~~-~~~~l~s~~~dg------~i~~wd  135 (312)
                      .++.+++.|+.+    ..+.+||..+..- .+. .     +.. ...-.+++..+ ++..++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456666666643    3577888765421 111 1     111 11112233333 677788887543      578899


Q ss_pred             cCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCC--eEEEEeCCCCceeeEcc----cCCCCcEEEEEECCC-CCEE
Q 021459          136 VKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDG--TCKIWDAGEGACLKTLI----DDKDPAVSFAKFSPN-GKFI  207 (312)
Q Consensus       136 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l  207 (312)
                      +.+.+-...-.... ..-.+++...++++++.|+.++  .+.+||+.+........    .........+.+..+ +..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            88765432211111 1112233324788888887655  68999998876443211    111111222334444 6677


Q ss_pred             EEEec--C-----CeEEEEEcCCCc------EEEEEEccCCceeEEEEEEEccCCcEEEEeec--------CCeEEEEEC
Q 021459          208 LVGTL--D-----STLKLWNYSAGK------FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE--------DNCVYVWDL  266 (312)
Q Consensus       208 ~~~~~--d-----~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~iwd~  266 (312)
                      +.|+.  +     +.+.+||+.+..      .................. ...++++++.|+.        ...|.+||+
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            77765  2     468899998877      333322111111111111 1123677777774        345899998


Q ss_pred             Cchh
Q 021459          267 QQKT  270 (312)
Q Consensus       267 ~~~~  270 (312)
                      .+.+
T Consensus       634 ~t~~  637 (695)
T 2zwa_A          634 LSET  637 (695)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.83  E-value=0.17  Score=42.38  Aligned_cols=144  Identities=16%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec----cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce--------
Q 021459           31 SNDGTLLASASLDKTVIIWSASSLALVHRFVGH----SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD--------   98 (312)
Q Consensus        31 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~--------   98 (312)
                      +.+|..++.+- ++.||.-++.....-+.+...    -..|..+..+|+|++||..+ +..|.|-.+..+..        
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            34566665553 367887776643322222221    22578899999999999875 56788887752210        


Q ss_pred             ---eeeeeec------ccccEEEEEEecC---CCEEEEeecCCcEEEEEcCCCeE-EEEee---------ecCcCeEEEE
Q 021459           99 ---CLKTLRG------HSDFVFCVNFNPQ---SNLIVSGSFDESIRIWEVKTGKC-TRVIR---------AHSMPVTSVH  156 (312)
Q Consensus        99 ---~~~~~~~------~~~~v~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~-~~~~~---------~~~~~v~~~~  156 (312)
                         ..+.+.-      ....|..+.|+|-   +..|++-..|+.|++||+..... ...+.         .....+.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               0112211      2457999999995   45888999999999999975211 11221         1114578999


Q ss_pred             EccCCCEEEEee--CCCeEEEE
Q 021459          157 FNRDGSLIVSGS--HDGTCKIW  176 (312)
Q Consensus       157 ~~~~~~~l~~~~--~d~~i~iw  176 (312)
                      |.+++-.|...+  ..|.|.-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887666644  77887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.81  E-value=0.36  Score=46.97  Aligned_cols=234  Identities=11%  Similarity=0.164  Sum_probs=118.8

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV  123 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  123 (312)
                      ..|.|-|+.+.....+.   +-.--+.-.+|..+.+|-- ...++.++|+++. ..++...-. ..|.--.|-.+... +
T Consensus        48 ~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k-~klks~~~~-e~VvfWkWis~~~l-~  120 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALK-AGKTLQIFNIEMK-SKMKAHTMT-DDVTFWKWISLNTV-A  120 (1630)
T ss_pred             ceEEEEECCCCCCcccc---cccchhhccCCCcceEEEe-cCCeEEEeehHHh-hhhcccccC-CCceEEEecCCCee-E
Confidence            36777777765433211   1112234467777766654 3678999999874 234333322 34555566544433 2


Q ss_pred             EeecCCcEEEEEcCCC-eEEEEeeec----CcCeEEEEEccCCCEEEEee-------CCCeEEEEeCCCCceeeEcccCC
Q 021459          124 SGSFDESIRIWEVKTG-KCTRVIRAH----SMPVTSVHFNRDGSLIVSGS-------HDGTCKIWDAGEGACLKTLIDDK  191 (312)
Q Consensus       124 s~~~dg~i~~wd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~  191 (312)
                      -.+ +..|+-|++... .+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|....+..  +....+
T Consensus       121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegh  197 (1630)
T 1xi4_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGH  197 (1630)
T ss_pred             EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhhHh
Confidence            222 457999999642 333344333    34577777788888776433       347788887654322  111111


Q ss_pred             CCcEEEEEE---CCCCCEEEEEec---CCeEEEEEcCCC---c--E----EEEEEcc-CCceeEEEEEEEccCCcEEEEe
Q 021459          192 DPAVSFAKF---SPNGKFILVGTL---DSTLKLWNYSAG---K--F----LKIYTGH-TNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       192 ~~~~~~~~~---~~~~~~l~~~~~---d~~i~v~d~~~~---~--~----~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      .........   .+....+..+..   .+.++|-++...   .  .    +.++... ......+....+ +.-..+...
T Consensus       198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-~k~g~iy~i  276 (1630)
T 1xi4_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVFLI  276 (1630)
T ss_pred             HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec-cccCEEEEE
Confidence            111111111   011112222211   257788776432   1  0    1111111 111223333333 344567778


Q ss_pred             ecCCeEEEEECCchheeecccCCccceEEEEEc
Q 021459          256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH  288 (312)
Q Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  288 (312)
                      +.-|.|++||+.++..+..-+-....|...+-+
T Consensus       277 tk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             ecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            899999999999988765544334444444333

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.74  E-value=0.29  Score=43.76  Aligned_cols=205  Identities=10%  Similarity=-0.012  Sum_probs=113.9

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCeEEEEeCCCcceEEEeee------ccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCC
Q 021459           23 RAVSCVKFSNDGTLLASAS-LDKTVIIWSASSLALVHRFVG------HSEGISDLAWSSDSHYIC-SASDDRTLRIWDAR   94 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~   94 (312)
                      ..+.+++|.+.++.|.-+. ..+.|+.++.........+..      ....+..+++...+..|. +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            4577899998766665554 467888887765432222221      234678999998766554 55667789898886


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCC
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHD  170 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  170 (312)
                      ... ...........-..++++|....++.... ..  .|...++............-.....+++++++..|..+ +..
T Consensus       420 G~~-~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 GRS-VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             SCE-EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCe-EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence            432 11222233345778999995444443333 22  46666664332222222222346889999876666544 456


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      +.|...++.. ...+.+..........++... +..+.+=...+.|...|..+++....+
T Consensus       499 ~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          499 RRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            7898898854 333333322222223333332 333333344566777776666544433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.62  E-value=0.23  Score=40.87  Aligned_cols=204  Identities=10%  Similarity=0.106  Sum_probs=114.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEe------------CCCeEEEEeCCC--cce-EEEeee-----ccCCEEEEEEc
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASAS------------LDKTVIIWSASS--LAL-VHRFVG-----HSEGISDLAWS   73 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~------------~d~~i~vw~~~~--~~~-~~~~~~-----~~~~v~~~~~~   73 (312)
                      .++.+.+-......+...|+|..+++++            .+|.|.++|..+  .+. ...+.+     .......+.+.
T Consensus        41 ~C~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~  120 (355)
T 3sre_A           41 NCNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF  120 (355)
T ss_dssp             CEEECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEE
T ss_pred             CCEEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEE
Confidence            4555555444566777889876555542            689999999873  222 112222     12356677776


Q ss_pred             c--CCC-eEEEEcC---CCeEEEEeCCCCce---eeeeeecc-cccEEEEEEecCCCEEEEee-----------------
Q 021459           74 S--DSH-YICSASD---DRTLRIWDARTPFD---CLKTLRGH-SDFVFCVNFNPQSNLIVSGS-----------------  126 (312)
Q Consensus        74 ~--~~~-~l~~~~~---d~~v~~wd~~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~s~~-----------------  126 (312)
                      +  ++. +|+.+..   +..+.+|++.....   .+..+.+. -.....+...+++.+.++..                 
T Consensus       121 ~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL  200 (355)
T ss_dssp             ECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred             ECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence            5  454 4555522   45677776543211   22333322 23467888899988777653                 


Q ss_pred             cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCCCeEEEEeCCC-Ccee-eEcccCCCCcEEEEEECC-
Q 021459          127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGTCKIWDAGE-GACL-KTLIDDKDPAVSFAKFSP-  202 (312)
Q Consensus       127 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~-  202 (312)
                      ..|.|..+|.  ++...... .-...+.++|+||++.+..+ +..+.|..|++.. +... .+.. ........+++++ 
T Consensus       201 ~~g~vyr~d~--~~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e  276 (355)
T 3sre_A          201 AWSFVTYYSP--NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPV  276 (355)
T ss_dssp             CCEEEEEECT--TCCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTT
T ss_pred             CccEEEEEEC--CeEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCC
Confidence            1244555554  33222222 22346899999999877655 4567899998753 3221 1122 2234456677888 


Q ss_pred             CCCEEEEEecC-CeEEEEEc
Q 021459          203 NGKFILVGTLD-STLKLWNY  221 (312)
Q Consensus       203 ~~~~l~~~~~d-~~i~v~d~  221 (312)
                      +|++.+++..+ +.|..|+.
T Consensus       277 ~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          277 TGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             TCCEEEEEESCHHHHHSCCT
T ss_pred             CCcEEEEecCCceEEEEECC
Confidence            58877765433 23433443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.57  E-value=0.034  Score=42.13  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=62.9

Q ss_pred             ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE------EEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459          108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT------RVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE  180 (312)
Q Consensus       108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (312)
                      ..+..++|+|++.+.+.  .+|.++-.+..+.+..      ..+-. --..-..+.|.|+|.+.++  .||.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            35678999998886666  6777666665442111      11100 0011367899999987777  569988887643


Q ss_pred             Cceee-----Ecc-cCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459          181 GACLK-----TLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKL  218 (312)
Q Consensus       181 ~~~~~-----~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  218 (312)
                      .....     ... ...-..+..+.++|+|.+.++.  |+.++-
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            22110     111 1111346788899999887776  777543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.55  E-value=0.3  Score=44.31  Aligned_cols=154  Identities=12%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             cCCCEEEEeecC----CcEEEEEcCCCeEEEEe-e------ecCcCeEEEEEcc-CCCEEEEeeCCC------eEEEEeC
Q 021459          117 PQSNLIVSGSFD----ESIRIWEVKTGKCTRVI-R------AHSMPVTSVHFNR-DGSLIVSGSHDG------TCKIWDA  178 (312)
Q Consensus       117 ~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d~------~i~iwd~  178 (312)
                      .++..++.|+.+    ..+.+||..+++-...- .      .....-.+++..+ ++++++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777754    45888998877543322 1      0111112333333 777888877543      4778898


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC--eEEEEEcCCCcEEEEEEc--cCCceeEEE-EEEEccCCcEEE
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS--TLKLWNYSAGKFLKIYTG--HTNKKYCIT-STFSVTNGKYIV  253 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~  253 (312)
                      .+.+....-.......-..++.-.++..++.|+.++  .+.+||..+......-..  ......... .......+++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            876543221101111111222324778888887654  689999988776443210  010111111 122222266777


Q ss_pred             Eeec--C-----CeEEEEECCchh
Q 021459          254 SGSE--D-----NCVYVWDLQQKT  270 (312)
Q Consensus       254 ~~~~--d-----g~i~iwd~~~~~  270 (312)
                      .|+.  +     ..+..||+.+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7765  2     468899987655

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.54  E-value=0.32  Score=41.59  Aligned_cols=105  Identities=10%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE--EEeee------ccCCEEEEEEccC---CCeEEEEcC-------
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV--HRFVG------HSEGISDLAWSSD---SHYICSASD-------   84 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~-------   84 (312)
                      ..-..++|.|+|+++++-...+.|++++..++...  ..+..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            34568999999998887655457888876544332  22211      2356779999995   444444332       


Q ss_pred             ------CCeEEEEeCCCC------cee-eeeee-cccccEEEEEEecCCCEEEEeec
Q 021459           85 ------DRTLRIWDARTP------FDC-LKTLR-GHSDFVFCVNFNPQSNLIVSGSF  127 (312)
Q Consensus        85 ------d~~v~~wd~~~~------~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~  127 (312)
                            ...|.-++....      .+. +..+. ........+.|.||+.++++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  124444543221      111 11121 11234678999999998777553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.42  E-value=0.31  Score=40.11  Aligned_cols=104  Identities=19%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeee----ecccccEEEEEEecC---CCEEEEee-c-------C
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTL----RGHSDFVFCVNFNPQ---SNLIVSGS-F-------D  128 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~----~~~~~~v~~~~~~~~---~~~l~s~~-~-------d  128 (312)
                      .....|+|.|+|+.|+++...|.|++++...... .+..+    .........++++|+   +..|+... .       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3467899999998344455679999988532111 11111    111234578999996   44444432 2       2


Q ss_pred             CcEEEEEcCCC--e--EEE-Eeeec------CcCeEEEEEccCCCEEEEee
Q 021459          129 ESIRIWEVKTG--K--CTR-VIRAH------SMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       129 g~i~~wd~~~~--~--~~~-~~~~~------~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ..|..+++..+  +  ..+ .+...      ......+.|.|||.+.++.+
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            35666666433  1  111 11111      11235799999997666643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.41  E-value=0.31  Score=40.10  Aligned_cols=143  Identities=13%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-eEEEee---eccCCEEEEEEccC---CCeEEEEcC----C----C
Q 021459           22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-LVHRFV---GHSEGISDLAWSSD---SHYICSASD----D----R   86 (312)
Q Consensus        22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~   86 (312)
                      -..-..++|.|+|+++++ ..+|.|++++. +++ .+..+.   ........|+++|+   +..|..+..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345678999999986655 55689998873 343 222111   11346789999997   445544432    2    4


Q ss_pred             eEEEEeCCCC------ceee-eeeec-ccccEEEEEEecCCCEEEEeecC-------------CcEEEEEcCCCe-----
Q 021459           87 TLRIWDARTP------FDCL-KTLRG-HSDFVFCVNFNPQSNLIVSGSFD-------------ESIRIWEVKTGK-----  140 (312)
Q Consensus        87 ~v~~wd~~~~------~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~~wd~~~~~-----  140 (312)
                      .|..|+....      .+.+ ..+.. .......+.|.||+.++++.+..             |.|..++....-     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            5667765432      1111 11221 11123568899999877775432             345555543210     


Q ss_pred             --EEEEe-eecCcCeEEEEEcc-CCCEEEEe
Q 021459          141 --CTRVI-RAHSMPVTSVHFNR-DGSLIVSG  167 (312)
Q Consensus       141 --~~~~~-~~~~~~v~~~~~~~-~~~~l~~~  167 (312)
                        ....+ .++. ....++|+| +++++++-
T Consensus       186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence              01111 1232 246789999 67766553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.29  E-value=0.37  Score=39.64  Aligned_cols=142  Identities=11%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             cceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcc--eEEEe----eeccCCEEEEEEccC---CCeEEEEc-C-------
Q 021459           23 RAVSCVKFSNDGT-LLASASLDKTVIIWSASSLA--LVHRF----VGHSEGISDLAWSSD---SHYICSAS-D-------   84 (312)
Q Consensus        23 ~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~--~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------   84 (312)
                      ..-..++|.|+|+ ++++ ...|.|++++.....  .+..+    .........|+++|+   +..|..+. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            3457899999999 6655 567899998754221  11111    112345788999996   44444432 2       


Q ss_pred             CCeEEEEeCCCC------ceee-eeee---cccccEEEEEEecCCCEEEEeecC-------------CcEEEEEcCCCe-
Q 021459           85 DRTLRIWDARTP------FDCL-KTLR---GHSDFVFCVNFNPQSNLIVSGSFD-------------ESIRIWEVKTGK-  140 (312)
Q Consensus        85 d~~v~~wd~~~~------~~~~-~~~~---~~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~~wd~~~~~-  140 (312)
                      ...|..++....      .+.+ ..+.   .....-..+.|.||+.++++.+..             |.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            124555555321      1111 1111   111123468999999766664332             456666654210 


Q ss_pred             -----------EEEEee-ecCcCeEEEEEcc-CCCEEEE
Q 021459          141 -----------CTRVIR-AHSMPVTSVHFNR-DGSLIVS  166 (312)
Q Consensus       141 -----------~~~~~~-~~~~~v~~~~~~~-~~~~l~~  166 (312)
                                 ....+. ++. ....++|+| +++++++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                       111121 222 357899999 6665554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.81  E-value=0.73  Score=38.87  Aligned_cols=242  Identities=12%  Similarity=0.177  Sum_probs=134.6

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV  123 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  123 (312)
                      ..+.|-|+.+.....+..   -.-.+.-.+|..+.+|--. ...+.++|+++. ..++...-.. .|.--.|-.+. .|+
T Consensus        48 ~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K-~klks~~~~e-~VvfWkWis~~-~l~  120 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK-SKMKAHTMTD-DVTFWKWISLN-TVA  120 (494)
T ss_dssp             CEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT-EEEEEEECSS-CCCEEEEEETT-EEE
T ss_pred             CeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHh-hhhcceecCC-CceEEEecCCC-eEE
Confidence            467777877754432211   1122455788887776554 679999999885 4455444333 34445565443 333


Q ss_pred             EeecCCcEEEEEcCCC-eEEEEeeec----CcCeEEEEEccCCCEEEEeeC-------CCeEEEEeCCCCceeeEcccCC
Q 021459          124 SGSFDESIRIWEVKTG-KCTRVIRAH----SMPVTSVHFNRDGSLIVSGSH-------DGTCKIWDAGEGACLKTLIDDK  191 (312)
Q Consensus       124 s~~~dg~i~~wd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~  191 (312)
                      -.+ +..|+-|++... .+.+.+..|    ...|..-..+++.++++..+-       .|.+.+|....+..  +....+
T Consensus       121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ieGh  197 (494)
T 1bpo_A          121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGH  197 (494)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EEECCS
T ss_pred             EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--chheee
Confidence            332 457999999643 345555544    345777777888888775432       36778888765432  222222


Q ss_pred             CCcEEEEEECCCC-----CEEEEEec---CCeEEEEEcCCC--------cE-EEEE-EccCCceeEEEEEEEccCCcEEE
Q 021459          192 DPAVSFAKFSPNG-----KFILVGTL---DSTLKLWNYSAG--------KF-LKIY-TGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       192 ~~~~~~~~~~~~~-----~~l~~~~~---d~~i~v~d~~~~--------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      .  ..+..+-.+|     ..++.+..   .+.+++.++...        +. +..+ .........+....+ +.-..+.
T Consensus       198 a--a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-~kygviy  274 (494)
T 1bpo_A          198 A--ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVF  274 (494)
T ss_dssp             E--EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-TTTTEEE
T ss_pred             e--eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-ccCCEEE
Confidence            2  2222222222     12333322   267888887432        11 1111 111122344554444 4455777


Q ss_pred             EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .-+.-|.|++||++++..+..-+-..+.|..-+.+....-++...
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn  319 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN  319 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc
Confidence            888999999999999988766554455555555544433343333

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.48  E-value=0.76  Score=36.84  Aligned_cols=175  Identities=7%  Similarity=0.004  Sum_probs=96.2

Q ss_pred             EECCCCCEEEEEeCC--------------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc--CCC--eEEE
Q 021459           29 KFSNDGTLLASASLD--------------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS--DDR--TLRI   90 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~--~v~~   90 (312)
                      -++++++.|+-+...              ..|+..+....+... +.  ...  ...|+++++.|+-..  .++  .|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            357888888766542              356777776654322 21  111  236788888888765  333  4545


Q ss_pred             EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      .++....  ...+..+..    ..++++++.|+-.+. ...|.+.++..+.....+.   .... ..+.|++.+|+-...
T Consensus       134 ~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          134 IRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred             EECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence            5554321  223332322    345777877775554 5778888887665444332   2222 235688887775543


Q ss_pred             C--CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec--CCeEEEEEcCCC
Q 021459          170 D--GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL--DSTLKLWNYSAG  224 (312)
Q Consensus       170 d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~  224 (312)
                      .  ..|..-++.... ...+..   ..+  ..++|++++|..+..  .+.|..-++...
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            3  356666665433 222221   112  347888888876532  356666666443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.21  E-value=2.4  Score=40.94  Aligned_cols=243  Identities=12%  Similarity=0.122  Sum_probs=120.6

Q ss_pred             EEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEecC-----
Q 021459           46 VIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQ-----  118 (312)
Q Consensus        46 i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~-----  118 (312)
                      |++.+......+..+... ...|...+.+  +..++.++ .+.+.++++..+. ..... ..-...|.|+++.|.     
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTT
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcc
Confidence            444444433444444322 2345555543  23555554 5677777765431 11111 122457999998763     


Q ss_pred             -CCEEEEeec-CCcEEEEEcCCCeEEEEeeec-CcCeEEEEEc--cCCCEEEEeeCCCeEEEE--eCCCCceee---Ecc
Q 021459          119 -SNLIVSGSF-DESIRIWEVKTGKCTRVIRAH-SMPVTSVHFN--RDGSLIVSGSHDGTCKIW--DAGEGACLK---TLI  188 (312)
Q Consensus       119 -~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d~~i~iw--d~~~~~~~~---~~~  188 (312)
                       +.+++.|.+ |++|+++++...+.+....-. .....++.+.  ....++..|-.||.+.-+  |..++....   ...
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L  649 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL  649 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc
Confidence             368888887 999999999876554332211 1233333332  233578889999987554  444444332   223


Q ss_pred             cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC-CcEEEEeecCCeEEEEECC
Q 021459          189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN-GKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~  267 (312)
                      +.  ..+....+...+..-+.+..+....++-. .++.... .-.......+ +.|.... .+-++..+ ++.++|..+.
T Consensus       650 G~--~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s-~l~~~~v~~~-~~F~se~~~~g~v~~~-~~~LrI~~i~  723 (1158)
T 3ei3_A          650 GT--QPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFS-NVNLKEVNYM-CPLNSDGYPDSLALAN-NSTLTIGTID  723 (1158)
T ss_dssp             CS--SCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEE-EBSSSCCCEE-EEECCSSSTTEEEEEC-SSCEEEEEEC
T ss_pred             CC--CceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEe-ccChHHhceE-eccCcccCCCcEEEEc-CCceEEEEec
Confidence            32  22333334434433333333444444433 2332211 1111111111 1222221 23344333 4458888775


Q ss_pred             chhe--eecccCCccceEEEEEcCCCceEEEeee
Q 021459          268 QKTM--IQKLDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       268 ~~~~--~~~~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      +...  +++++ -...+..+++||..+.++.+..
T Consensus       724 ~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          724 EIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             CSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred             ccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence            3321  22222 2346899999998887766553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.98  E-value=1.1  Score=35.88  Aligned_cols=172  Identities=9%  Similarity=0.048  Sum_probs=86.9

Q ss_pred             cCCCeEEEEc--CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC--------------CcEEEEEcC
Q 021459           74 SDSHYICSAS--DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--------------ESIRIWEVK  137 (312)
Q Consensus        74 ~~~~~l~~~~--~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------g~i~~wd~~  137 (312)
                      .++..|....  .++.|...+.....  ...+..  +.  +--++++++.++-+...              ..|+..++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~--~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN--IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS--CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC--CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            3555555442  24555555544321  222221  11  23457888887766543              356777776


Q ss_pred             CCeEEEEeeecCcCeEEEEEccCCCEEEEee----CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec-
Q 021459          138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS----HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL-  212 (312)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  212 (312)
                      ..+.....   ..+  ...++++++.++-..    ....|...++.... ...+.....     ..++++++.|.-.+. 
T Consensus        97 g~~~~~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-----~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A           97 GHGSTVLD---PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-----FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             SCCCEEEE---CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-----CCSEEETTEEEEECTT
T ss_pred             CCcceEee---cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-----eEeeEECCEEEEEeCC
Confidence            65432221   112  236777888777654    33455555655322 233332221     235677888776654 


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC--CeEEEEECCch
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED--NCVYVWDLQQK  269 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~  269 (312)
                      ...|.+.++..+....++.+   ... .  ... |++.+|+-...+  ..|..-++...
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~---~~~-~--~~~-P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDC---NCY-K--PVV-LDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECS---CEE-E--EEE-EETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             CceEEEEECCCCCEEEEeCC---Ccc-c--eee-ecCCEEEEEEcCCCcEEEEEECCCC
Confidence            57888888876654444322   111 1  122 456666544322  35655565443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.60  E-value=4.2  Score=37.12  Aligned_cols=220  Identities=12%  Similarity=0.131  Sum_probs=112.1

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      ...|.+|.-..+|.+- .|..+| +..||-..- ...... ......|.++....++ .|..++.+| +..||..+++..
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~-~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYST-QQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSC-EEEECSSCE-EECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC
T ss_pred             cceEEEEEECCCCCEE-EEECCC-ccccCCCce-EEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE
Confidence            3568888877777544 455666 566774321 111100 1123457787766665 556666655 789998876533


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE-cc--cCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT-LI--DDKDPAVSFAKFSPNGKFILVGTLDSTLKLW  219 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~  219 (312)
                      .........|.++.. .++. +..++.+ .+..+|..+++...- ..  .-....+..+..+.++.+.+ ++. +-+..+
T Consensus        96 ~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~  170 (758)
T 3ott_A           96 QPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRY  170 (758)
T ss_dssp             CCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEE
T ss_pred             CcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhC
Confidence            211111234666654 4554 4555555 678888776543321 00  11123466666677776555 444 457788


Q ss_pred             EcCCCcEEEEEEccCC---ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          220 NYSAGKFLKIYTGHTN---KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       220 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      |..+++... +.....   ....+.......++..|-.|+. +-+..+|..+.+...........|.++...+++...+
T Consensus       171 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  247 (758)
T 3ott_A          171 IPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA  247 (758)
T ss_dssp             ETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE
T ss_pred             ccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE
Confidence            876655432 211110   0111222333334444333444 3477888765433211111234577777776665444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.43  E-value=0.35  Score=39.46  Aligned_cols=113  Identities=10%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             CEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEE--cc-CCCEEEEe-eCCCeEEEEeCCCCceeeEcccC---C
Q 021459          120 NLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHF--NR-DGSLIVSG-SHDGTCKIWDAGEGACLKTLIDD---K  191 (312)
Q Consensus       120 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~---~  191 (312)
                      ..++.++.||.|.-.|..+|+..-.++.. ..++....-  .+ ++..++.. +.||.+..++..+|.....+...   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888899999999999999887766543 122222110  01 23334443 68999999998877443222110   0


Q ss_pred             CCcEEEE---EE-C----CCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          192 DPAVSFA---KF-S----PNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       192 ~~~~~~~---~~-~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      ...+...   .. .    ..+..+.+|+.++.+.-.|.++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1111100   00 0    1456788899999999999999998877653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.43  E-value=3.3  Score=35.32  Aligned_cols=104  Identities=9%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeeeec------ccccEEEEEEecC---CCEEEEeec-------
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTLRG------HSDFVFCVNFNPQ---SNLIVSGSF-------  127 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~~~------~~~~v~~~~~~~~---~~~l~s~~~-------  127 (312)
                      .....|+|.|+|+++++-...+.|++++..++.. .+..+..      .......++|+|+   +..|+....       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3457899999999777654445788887543322 1222211      1345678999995   455444332       


Q ss_pred             ------CCcEEEEEcCCC--e---EEEEe---ee-cCcCeEEEEEccCCCEEEEee
Q 021459          128 ------DESIRIWEVKTG--K---CTRVI---RA-HSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       128 ------dg~i~~wd~~~~--~---~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~  168 (312)
                            ...|.-+++..+  +   ....+   .. .......++|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  234666655332  1   11112   11 112367899999998777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.25  E-value=1.1  Score=39.19  Aligned_cols=102  Identities=17%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             CEEEEEEccCCCeEEEEc-CCCeEEEEeCCCC-----------cee-eeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           66 GISDLAWSSDSHYICSAS-DDRTLRIWDARTP-----------FDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~-----------~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      ....+..+|||++++.++ .+.++.++|.+..           ... ....+ -.-.-...+|.++|+...+--.|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            345678999999877654 4778999997631           111 11111 112235678999997777777899999


Q ss_pred             EEEcCCC----------eEEEEeeecCcCeEEEE-----EccCCCEEEEee
Q 021459          133 IWEVKTG----------KCTRVIRAHSMPVTSVH-----FNRDGSLIVSGS  168 (312)
Q Consensus       133 ~wd~~~~----------~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~  168 (312)
                      .|++...          ..+..+..|..+-...+     -.|+|++|++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            9998642          33444444543322211     156888888864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.13  E-value=6.9  Score=35.73  Aligned_cols=276  Identities=13%  Similarity=0.165  Sum_probs=137.9

Q ss_pred             CCccCCCCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccCCCeE
Q 021459            1 MAAAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSDSHYI   79 (312)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l   79 (312)
                      |+-.+.+.+..++.+.. ..-...|+++.-..+|.+- .|..+| +..||-...+..... ......|.++.-..++. |
T Consensus         1 ~~~~~~~~~~~f~~~~~-gl~~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-l   76 (758)
T 3ott_A            1 MEYGKKVNYQQFDNIYL-GAEASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-L   76 (758)
T ss_dssp             --------CCCCEEECC-CSSCCCEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-E
T ss_pred             CCcccCcchhhhhcccc-ccccceEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-E
Confidence            44444444443333222 1235679999988888643 344666 455664322111000 01134588887776664 4


Q ss_pred             EEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee----ecCcCeEEE
Q 021459           80 CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR----AHSMPVTSV  155 (312)
Q Consensus        80 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~~v~~~  155 (312)
                      -.|..+| +..||..+.. ...........|.++.. .++ .+..++.+ -+..+|..+++......    .....|.++
T Consensus        77 WigT~~G-l~~yd~~~~~-f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i  151 (758)
T 3ott_A           77 YMGTDNG-ILVYNYRADR-YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSI  151 (758)
T ss_dssp             EEEETTE-EEEEETTTTE-ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEE
T ss_pred             EEEeCCC-eEEEeCCCCE-EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEE
Confidence            4555555 7889976532 11111111234666643 344 55556655 58888987665432201    113457888


Q ss_pred             EEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC----CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459          156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD----KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      ...+++.+.+ ++.. -+..+|..+++........    ....+..+..++++..|.+|+. +-+..+|..+++.... .
T Consensus       152 ~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~-~  227 (758)
T 3ott_A          152 IRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT-E  227 (758)
T ss_dssp             EECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE-E
T ss_pred             EEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec-c
Confidence            8877887665 4444 5777887665432211111    1123556666666665555664 4688888776654322 1


Q ss_pred             ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecc-------cCCccceEEEEEcCCCce
Q 021459          232 GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL-------DGHTDSVISVTCHPTENK  293 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~  293 (312)
                      ..  ....+.......++.+.+ |+.+| +.+++..+.......       .-....|.++....++..
T Consensus       228 ~l--~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l  292 (758)
T 3ott_A          228 AF--HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI  292 (758)
T ss_dssp             EE--EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred             CC--CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence            11  111233333334555444 44544 778887654321110       011235788877666543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.13  E-value=3.6  Score=32.47  Aligned_cols=245  Identities=13%  Similarity=0.061  Sum_probs=114.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .|..++..... .++. . ||.+..|-.....++..-......|..++...... ++. . ||.|+.|-.....+ +...
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP   97 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence            45666654332 2333 4 89999996554222111111234566776654332 333 4 89999996543211 1111


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      ..-...|..++...+  ..+.-. +|.|+.|-....-.+.........|..++...+  ..+.-. ||.+..|-......
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence            111235666665543  333334 899999975432111111112234666654333  333334 78899886543211


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEE
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV  263 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  263 (312)
                      +.... .....+..++...+ ..++.  .||.|+.|-....-.+..-.........+.+    .....++. . ||.|..
T Consensus       172 lg~p~-~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~----G~~h~~al-~-~g~v~~  241 (282)
T 3qhy_B          172 TTVPA-EAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS----GEWYSLAL-K-NGKVIA  241 (282)
T ss_dssp             TSCCG-GGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE----CSSCEEEE-E-TTEEEE
T ss_pred             CCCce-ecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc----CCCEEEEE-E-CCEEEE
Confidence            11100 11123444444333 23333  5899999975432111100000111112221    12223333 3 999999


Q ss_pred             EECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       264 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      |-.+...++..    ...|..++..+.....+
T Consensus       242 wG~n~~gq~~v----~~~v~~iaaG~~h~~al  269 (282)
T 3qhy_B          242 WGSSRTAPSSV----QSGVSSIEAGPNAAYAL  269 (282)
T ss_dssp             ESTTCCCCGGG----SSCEEEEEECSSCEEEE
T ss_pred             ecCCCCccccC----CCCcEEEEECcCeEEEE
Confidence            97765444333    23577887766543333

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.67  E-value=2  Score=37.50  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             eEEEEEccCCCEEEEee-CCCeEEEEeCCCCc------e-------eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459          152 VTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGA------C-------LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK  217 (312)
Q Consensus       152 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
                      ...+..+|||+++++++ .+.++.++|...-.      .       ..+..  .+......+|+++|....+--.|.+|.
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceEE
Confidence            35678899999988765 46789999986411      1       11111  122234567999996555566899999


Q ss_pred             EEEcCC
Q 021459          218 LWNYSA  223 (312)
Q Consensus       218 v~d~~~  223 (312)
                      .|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.35  E-value=6.5  Score=32.13  Aligned_cols=231  Identities=12%  Similarity=0.078  Sum_probs=115.4

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeee----ecccccEEEEEEecC---CCEEEEe---ecCCcEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTL----RGHSDFVFCVNFNPQ---SNLIVSG---SFDESIR  132 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~----~~~~~~v~~~~~~~~---~~~l~s~---~~dg~i~  132 (312)
                      -.....|+|.|+|+++++-...|.|++++...+.. .+..+    .........++++|+   +..|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34567899999999877765589999987654322 12111    112345688999995   3444332   2345566


Q ss_pred             EEEcCCC----------eEE-EEeee-cCcCeEEEEEccCCCEEEEeeC-------------CCeEEEEeCCCCce----
Q 021459          133 IWEVKTG----------KCT-RVIRA-HSMPVTSVHFNRDGSLIVSGSH-------------DGTCKIWDAGEGAC----  183 (312)
Q Consensus       133 ~wd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~----  183 (312)
                      -|.+..+          +.+ ..+.. .......+.|.|||.+.++.+.             .|.|.-.+....-.    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            6665441          111 11111 1122456899999988777543             24444444332100    


Q ss_pred             --eeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcE------------------EEEEEccCCceeEEEE
Q 021459          184 --LKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKF------------------LKIYTGHTNKKYCITS  242 (312)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~------------------~~~~~~~~~~~~~~~~  242 (312)
                        -.++....-....-++|+|+|.+.++- +.++.=.|--+..+..                  +..+..+.  .....+
T Consensus       191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~--~ap~G~  268 (347)
T 3das_A          191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE--ASPSGI  268 (347)
T ss_dssp             STTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT--CCEEEE
T ss_pred             CCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC--CCCcce
Confidence              000000011112345688887765543 2222122221222211                  01111000  111222


Q ss_pred             EEEccCCcEEEEeecCCeEEEEECCchhe----eecccCCccceEEEEEcCCCceEEEee
Q 021459          243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTM----IQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      .+.  ++.+++..-..+.|....+.....    ...+.+....+..|+..|+|..+++..
T Consensus       269 ~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          269 AYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             EEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            332  466666666666676666644321    122344446789999999998776644

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.02  E-value=7.1  Score=30.73  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=98.1

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI  145 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  145 (312)
                      .|..++..... .++ .. ||.|+.|-.....+ +.........|..++..... .++. . ||.|+.|-....-.+..-
T Consensus        25 ~i~~ia~G~~h-~~~-l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLA-LK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSSE-EEE-EE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCCe-EEE-EE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            56666654332 233 34 89999996543211 11111112345556554332 2333 4 899999975432111110


Q ss_pred             eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          146 RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      ..-...|..++...+  ..+.-. +|.+..|-... ++.-...  .....+..++...+  ..++-. ||.|+.|-....
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~--~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~  169 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA--EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYF  169 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG--GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTT
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc--cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCC
Confidence            011235666665433  444445 89999996543 2221111  11223444433332  222233 789998875432


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT  304 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~  304 (312)
                      ..+..-.........+.   . .....++.  +||.|..|-.+....+..-......|..++........++   ||  .
T Consensus       170 gqlg~p~~~~~~v~~i~---~-G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g--~  238 (282)
T 3qhy_B          170 GQTTVPAEAQSGVDDVA---G-GIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NG--K  238 (282)
T ss_dssp             STTSCCGGGGSSEEEEE---E-CSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TT--E
T ss_pred             CCCCCceecCCCeEEEE---e-cCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CC--E
Confidence            11110000011111121   1 22233444  6999999976543222111111234667766544322222   43  5


Q ss_pred             EEEE
Q 021459          305 VRVW  308 (312)
Q Consensus       305 v~iw  308 (312)
                      |..|
T Consensus       239 v~~w  242 (282)
T 3qhy_B          239 VIAW  242 (282)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6666

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=86.10  E-value=12  Score=30.21  Aligned_cols=154  Identities=9%  Similarity=0.025  Sum_probs=86.2

Q ss_pred             cceEE-EEECC--CCCEEEEEeCCCeEEEEeCCCcce-------EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           23 RAVSC-VKFSN--DGTLLASASLDKTVIIWSASSLAL-------VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        23 ~~v~~-~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..|.. +....  +...++.++.+|.++.-.+.....       ...+.. .+.+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            34444 45543  578999999999999876544221       112222 34555555555556677777889888777


Q ss_pred             CC--CCcee--------eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-------eEEEEee--ecCcCeE
Q 021459           93 AR--TPFDC--------LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-------KCTRVIR--AHSMPVT  153 (312)
Q Consensus        93 ~~--~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~~~--~~~~~v~  153 (312)
                      ..  .-...        ...+. ..+.|.++...+++..++..+..|.++.-.+..-       +-...++  .....+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            65  21110        11122 2345666655556678888899999988775321       1122222  1122344


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEeC
Q 021459          154 SVHFNRDGSLIVSGSHDGTCKIWDA  178 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~d~~i~iwd~  178 (312)
                      .+....+...++..+.+|.+.-++.
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~~  277 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTAA  277 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEeh
Confidence            4433334455666677777666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.09  E-value=15  Score=31.32  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=57.4

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcc---eEEEee-----e----ccCCEEEEEEccC----CCeEEEEcC--
Q 021459           24 AVSCVKFSNDGT-LLASASLDKTVIIWSASSLA---LVHRFV-----G----HSEGISDLAWSSD----SHYICSASD--   84 (312)
Q Consensus        24 ~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~---~~~~~~-----~----~~~~v~~~~~~~~----~~~l~~~~~--   84 (312)
                      .-..++|.|+|. .|+.+...|.|++++.....   .+..+.     +    .......|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            345789999996 44445678999999754321   111111     1    1356788999996    333332221  


Q ss_pred             C----------CeEEEEeCCCC---------ceeeeeee--cccccEEEEEEecCCCEEEEeecCC
Q 021459           85 D----------RTLRIWDARTP---------FDCLKTLR--GHSDFVFCVNFNPQSNLIVSGSFDE  129 (312)
Q Consensus        85 d----------~~v~~wd~~~~---------~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg  129 (312)
                      +          ..|.-|.+...         .+.+..+.  ........+.|.||+.++++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          13333544310         12222221  1123467899999998877766543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=85.34  E-value=13  Score=29.80  Aligned_cols=189  Identities=12%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcceE-------E--EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee--
Q 021459           31 SNDGTLLASASLDKTVIIWSASSLALV-------H--RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC--   99 (312)
Q Consensus        31 s~~~~~l~t~~~d~~i~vw~~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~--   99 (312)
                      -|+...+++.+.+|.|+--........       .  .+. ..+.+..+......+.++..+..|.++-.....-...  
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            356778889999999988755433211       1  111 2244555555555556667778888766654211000  


Q ss_pred             ---------eeeeecccccEEEEEEec---CCCEEEEeecCCcEEEEEcCC-------CeEEEEeeecCcCeEEEEEccC
Q 021459          100 ---------LKTLRGHSDFVFCVNFNP---QSNLIVSGSFDESIRIWEVKT-------GKCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus       100 ---------~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~  160 (312)
                               ...+.. .+.+..+...+   +...++..+.+|.++.-.+..       |.....+.. ...+..+....+
T Consensus        84 ~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~  161 (312)
T 1suu_A           84 ASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK  161 (312)
T ss_dssp             ----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred             cCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence                     011221 23344443322   356788889999998887642       221112222 344555555455


Q ss_pred             CCEEEEeeCCCeEEEEeCCCC-------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          161 GSLIVSGSHDGTCKIWDAGEG-------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      +..++..+.+|....+...+-       +-.+-+....+..+..+..-.++..+++.+..|..+...+.
T Consensus       162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            567888899998888865321       11111111122333333333455678888899999988874

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.53  E-value=17  Score=34.32  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             EEccCCcEEEEeecCCeEEEEECCchheeec
Q 021459          244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK  274 (312)
Q Consensus       244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  274 (312)
                      ...++..++++-+.|+++++|++.+++++..
T Consensus       242 ~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          242 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             EEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            3445677999999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-50
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-34
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-33
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-46
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-29
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-38
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-32
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-24
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-27
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-18
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-26
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-25
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-23
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-13
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-22
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-22
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-20
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-19
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-13
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	9e-11
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	4e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  168 bits (425), Expect = 1e-50
 Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 27/320 (8%)

Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
           P  P ++   L+ H   V+ V F    +++ SAS D T+ +W   +        GH++ +
Sbjct: 5   PRPPEKY--ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 68  SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
            D+++      + S S D T+++WD +      +T+ GH   V  V+  P  + IVS S 
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187
           D++I++WEV+TG C +    H   V  V  N+DG+LI S S+D T ++W      C   L
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

Query: 188 IDDKDPAVSFA-------------------KFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228
            + +      +                   K    G F+L G+ D T+K+W+ S G  L 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
              GH N    +      + GK+I+S ++D  + VWD + K  ++ L+ H   V S+  H
Sbjct: 242 TLVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 289 PTENKIASAGLDGDRTVRVW 308
            T   + +  +D   TV+VW
Sbjct: 299 KTAPYVVTGSVDQ--TVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (316), Expect = 1e-34
 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 21/186 (11%)

Query: 12  YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLA 71
               KT T H   V  V+ + DGTL+AS S D+TV +W  ++         H   +  ++
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 72  W--------------------SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVF 111
           W                         ++ S S D+T+++WD  T   CL TL GH ++V 
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVR 251

Query: 112 CVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171
            V F+     I+S + D+++R+W+ K  +C + + AH   VTS+ F++    +V+GS D 
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 172 TCKIWD 177
           T K+W+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (303), Expect = 8e-33
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 22/235 (9%)

Query: 5   QTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHS 64
           +   ++ +   +T+  H   VS V    +G  + SAS DKT+ +W   +   V  F GH 
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143

Query: 65  EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN-------- 116
           E +  +  + D   I S S+D+T+R+W   T  +C   LR H   V C+++         
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSI 202

Query: 117 ------------PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI 164
                            ++SGS D++I++W+V TG C   +  H   V  V F+  G  I
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262

Query: 165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219
           +S + D T ++WD     C+KTL   +    S   F     +++ G++D T+K+W
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD-FHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.5 bits (241), Expect = 5e-24
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 89  RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH 148
           + W  R P      L GH   V  V F+P  +++VS S D +I++W+ +TG   R ++ H
Sbjct: 1   KEWIPRPP--EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFIL 208
           +  V  + F+  G L+ S S D T K+WD     C++T+       VS     PNG  I+
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIV 117

Query: 209 VGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268
             + D T+K+W    G  +K +TGH      +       +G  I S S D  V VW +  
Sbjct: 118 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN---QDGTLIASCSNDQTVRVWVVAT 174

Query: 269 KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           K    +L  H   V  ++  P  +  + +   G  T +  
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  157 bits (396), Expect = 3e-46
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           +TL  H   +  + +  D  LL SAS D  +IIW + +   VH     S  +   A++  
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHS--DFVFCVNFNPQSNLIVSGSFDESIRI 133
            +Y+     D    I++ +T    ++  R  +              N IV+ S D +  +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 134 WEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193
           W+++TG+ T     H+  V S+    D  L VSG+ D + K+WD  EG C +T    +  
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253
            ++   F PNG     G+ D+T +L++  A + L  Y+         + +FS  +G+ ++
Sbjct: 229 -INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLL 286

Query: 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           +G +D    VWD  +      L GH + V  +        +A+   D    +++W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS--FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  121 bits (303), Expect = 1e-32
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 1/170 (0%)

Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
            +  +   T T H+  V  +  + D  L  S + D +  +W          F GH   I+
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230

Query: 69  DLAWSSDSHYICSASDDRTLRI-WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF 127
            + +  + +   + SDD T R+            +       +  V+F+    L+++G  
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 128 DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
           D +  +W+        V+  H   V+ +    DG  + +GS D   KIW+
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  111 bits (277), Expect = 7e-29
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 4/180 (2%)

Query: 43  DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT 102
           D T  +W   +      F GH+  +  L+ + D+    S + D + ++WD R    C +T
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQT 221

Query: 103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM--PVTSVHFNRD 160
             GH   +  + F P  N   +GS D + R+++++  +        ++   +TSV F++ 
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
           G L+++G  D  C +WDA +      L    +  VS    + +G  +  G+ DS LK+WN
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.0 bits (237), Expect = 3e-23
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 3/215 (1%)

Query: 94  RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT 153
           R      +TLRGH   ++ +++   S L+VS S D  + IW+  T      I   S  V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101

Query: 154 SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD 213
           +  +   G+ +  G  D  C I++         +  +      +           + T  
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273
                  +      +  T  T     + S     + +  VSG+ D    +WD+++    Q
Sbjct: 162 GDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220

Query: 274 KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
              GH   + ++   P  N  A+   D   T R++
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDA--TCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.9 bits (190), Expect = 7e-17
 Identities = 19/86 (22%), Positives = 30/86 (34%)

Query: 7   PPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG 66
                     +       ++ V FS  G LL +   D    +W A          GH   
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314

Query: 67  ISDLAWSSDSHYICSASDDRTLRIWD 92
           +S L  + D   + + S D  L+IW+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (343), Expect = 4e-38
 Identities = 90/327 (27%), Positives = 150/327 (45%), Gaps = 43/327 (13%)

Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-------------- 66
           H+  V CVKFSNDG  LA+   +KT  ++  S  +LV R    S                
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 67  ----ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
               I  + +S D  ++ + ++DR +RIWD       +  L+GH   ++ +++ P  + +
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
           VSGS D ++RIW+++TG+C+  +       T      DG  I +GS D   ++WD+  G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 183 CLKTLIDDKDP------AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG---- 232
            ++ L  + +       +V    F+ +G+ ++ G+LD ++KLWN                
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 233 -----HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV-- 285
                +   K  + S  +  N +YI+SGS+D  V  WD +    +  L GH +SVISV  
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 286 ----TCHPTENKIASAGLDGDRTVRVW 308
               +  P  N  A+   D     R+W
Sbjct: 359 ANGSSLGPEYNVFATGSGDC--KARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (300), Expect = 6e-32
 Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 22/276 (7%)

Query: 14  HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS 73
           +  +  +    +  V FS DG  LA+ + D+ + IW   +  +V    GH + I  L + 
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172

Query: 74  SDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI 133
                + S S DRT+RIWD RT    L                     I +GS D ++R+
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 134 WEVKTGKCTRVI-------RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
           W+ +TG     +         H   V SV F RDG  +VSGS D + K+W+         
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 187 LID-----------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235
                              V     + N ++IL G+ D  +  W+  +G  L +  GH N
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351

Query: 236 KKYCITSTFSVT---NGKYIVSGSEDNCVYVWDLQQ 268
               +      +         +GS D    +W  ++
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 4e-13
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 11  PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
                 T   H   V  V  + +   + S S D+ V+ W   S   +    GH   +  +
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 71  A------WSSDSHYICSASDDRTLRIWDAR 94
           A         + +   + S D   RIW  +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 3e-34
 Identities = 68/342 (19%), Positives = 119/342 (34%), Gaps = 48/342 (14%)

Query: 10  KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISD 69
              +  K L  H   V        G  + S S D T+ +WSA +   +   VGH+ G+  
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 70  LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG------------------------ 105
                +     S      +   +       L                             
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 106 -----------HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS 154
                                      +VSG++D  +++W+ +T  C   ++ H+  V S
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214
           + F  DG  +VSGS D + ++WD   G C+ TL   +               ++ G  DS
Sbjct: 183 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG---MELKDNILVSGNADS 237

Query: 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK 274
           T+K+W+   G+ L+   G    +  +  T    N  ++++ S+D  V +WDL+    I+ 
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 275 L-----DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311
           L      G    V  +    T+   A    +G    ++ V D
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 5e-24
 Identities = 73/298 (24%), Positives = 120/298 (40%), Gaps = 51/298 (17%)

Query: 49  WSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD 108
           W    L       GH + +         + I S SDD TL++W A T   CL+TL GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTG 58

Query: 109 FVFCVNFNP--------------------------------------QSNLIVSGSFDES 130
            V+                                                +VSGS D +
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD 190
           +R+W+++TG+C  V+  H   V  V ++     +VSG++D   K+WD     CL TL   
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTL--- 173

Query: 191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK 250
           +           +G  ++ G+LD+++++W+   G  +   TGH +    +          
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-----KDN 228

Query: 251 YIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
            +VSG+ D+ V +WD++    +Q L G      +VTC            D D TV++W
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 4e-20
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 40  ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99
            S D T+ +W   +   +H  +GH   +       D   + S + D  +++WD      C
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPE-TETC 169

Query: 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR 159
           L TL+GH++ V+ + F+     +VSGS D SIR+W+V+TG C   +  H    + +    
Sbjct: 170 LHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-- 225

Query: 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219
             +++VSG+ D T KIWD   G CL+TL        +      N  F++  + D T+KLW
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 220 NYSAGKFLKIYTGHTNKKY--CITSTFSVTNGKYIVSGSEDNC----VYVWDLQ 267
           +   G+F++      +      +    +         GS +      + V D  
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (263), Expect = 2e-27
 Identities = 63/306 (20%), Positives = 114/306 (37%), Gaps = 29/306 (9%)

Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAW 72
           +     +  S+ V C+++  D   + S   D T+ IW  ++L       GH+  +  L +
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 73  SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132
                         +                         ++    + ++V+ S D SI 
Sbjct: 64  D-----ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 133 IWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
           +W++ +     + R       +V+    D   IVS S D T K+W+      ++TL   K
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251
                 A      + ++ G+ D+T++LW+   G  L++  GH     CI         K 
Sbjct: 179 RG---IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KR 230

Query: 252 IVSGSEDNCVYVWDLQ---------QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302
           IVSG+ D  + VWDL              ++ L  H+  V  +       +I S+  D  
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDD- 287

Query: 303 RTVRVW 308
            T+ +W
Sbjct: 288 -TILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 6e-18
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 18/178 (10%)

Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
                  + L  H  AV+ V F +    + SAS D+T+ +W+ S+   V    GH  GI+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
                     + S S D T+R+WD      CL+ L GH            +  IVSG++D
Sbjct: 183 C--LQYRDRLVVSGSSDNTIRLWDIEC-GACLRVLEGH--EELVRCIRFDNKRIVSGAYD 237

Query: 129 ESIRIWEVKTG---------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
             I++W++             C R +  HS  V  + F  D   IVS SHD T  IWD
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 3e-16
 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 49/254 (19%)

Query: 93  ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV 152
            R     +      S  V+C+ ++     IVSG  D +I+IW+  T +C R++  H+  V
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58

Query: 153 TSVHFNRDGSLIVSGSHD--------------------------------------GTCK 174
             + ++    +  S                                           +  
Sbjct: 59  LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
           +WD      +           +      + K+I+  + D T+K+WN S  +F++   GH 
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
               C+         + +VSGS DN + +WD++    ++ L+GH +  +         +I
Sbjct: 179 RGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRI 231

Query: 295 ASAGLDGDRTVRVW 308
            S   DG   ++VW
Sbjct: 232 VSGAYDG--KIKVW 243

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 5   QTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW 49
                      +TL  HS  V  ++F  D   + S+S D T++IW
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 2e-26
 Identities = 34/319 (10%), Positives = 92/319 (28%), Gaps = 28/319 (8%)

Query: 15  FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLA 71
            +   A    +S +K     +LL   S D ++ ++     A     +    +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 72  WSSDS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
           +  ++   I   +    +   D              ++   C       + +++ S+D  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 131 IRIWEVKTGKCTRVIRA------HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
           I + + +      +           +       + + S ++ G ++   + +        
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 185 KT---LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG------------KFLKI 229
                    K      A      +     ++D  + +  +               +  ++
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289
               TN  Y + S       K++ +   D  +  W+LQ +  I+      +    V    
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC 302

Query: 290 TENKIASAGLDGDRTVRVW 308
           ++N +  A    D T +  
Sbjct: 303 SDNILCLAT--SDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 9e-14
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 13/224 (5%)

Query: 99  CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA---HSMPVTSV 155
            ++  +   D++  +   P  +L++  S+D S+ +++         +     +  P+   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 156 HFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214
           +F  +    I  G+  G     D       + L +++               ++  + D 
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 215 TLKLWNYSAGKFLKIYTGHTN---KKYCITSTFSVTNGKYIVSGSEDNCVYVWDL----Q 267
            +++ +        I   + N    K         TN   ++ G  ++ V  + L     
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 268 QKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311
               I++                +   A + +DG   V V   D
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVEFFD 224

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 20/190 (10%), Positives = 48/190 (25%), Gaps = 24/190 (12%)

Query: 72  WSSDSHYICSASDDRTLRIWDART---PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
             ++S  +    ++  ++ +           ++                +       S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 129 ESIRIWEVKTG---------------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173
             + +                     +        + PV S+ F+     + +   DG  
Sbjct: 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275

Query: 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233
             W+      +K     K    S  K + +   + + T D T K          +    +
Sbjct: 276 SCWNLQTRKKIKNFA--KFNEDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELN 329

Query: 234 TNKKYCITST 243
            +  Y I   
Sbjct: 330 ASSIYIIFDY 339

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 4e-11
 Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 15/122 (12%)

Query: 71  AWSSDSHYICSASDDRTLRIWDART--------------PFDCLKTLRGHSDFVFCVNFN 116
               +      +S D  + +                              +  V  + F+
Sbjct: 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260

Query: 117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
           P+   + +   D  I  W ++T K  +     +   + V      +++   + D T K  
Sbjct: 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTN 319

Query: 177 DA 178
            A
Sbjct: 320 AA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 4   AQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH 63
           ++   ++ +R     T  +  V+ ++FS     L +A  D  +  W+  +   +  F   
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 64  SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN 114
           +E  S +  +   + +C A+ D T +   A       +T+  ++  ++ + 
Sbjct: 293 NE-DSVVKIACSDNILCLATSDDTFKTNAA-----IDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 5/174 (2%)

Query: 140 KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC---LKTLIDDKDPAVS 196
           +  ++ +A    ++ +      SL++  S DG+  ++     A    L   +  K P + 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256
                     I VGT+   +   +       +  T +              +     S  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 257 EDNCVYVWDLQQ--KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
               V            ++ L+ +   V +       N         +  V+ +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 7e-25
 Identities = 63/302 (20%), Positives = 109/302 (36%), Gaps = 17/302 (5%)

Query: 13  RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS-----SLALVHRFVGHSEGI 67
           R   TL  H   V  V  SN    + +      V +W  S     S       +     I
Sbjct: 43  RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 68  SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN-FNPQSNLIVSGS 126
                  D   +    +  TL IWD   P   +K     S         +P S +  S  
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186
            D +I +W++      R  + H+   + +  + DG+ + +G  D T + WD  EG  L+ 
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ- 219

Query: 187 LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246
              D    +    + P G+++ VG   S +++ +         Y  H ++   ++  F+ 
Sbjct: 220 -QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV---NKPDKYQLHLHESCVLSLKFA- 274

Query: 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
             GK+ VS  +DN +  W       I +    + SV+S      +  I +   D      
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK--KAT 331

Query: 307 VW 308
           V+
Sbjct: 332 VY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 4e-14
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC 80
           H   V  +KF+  G    S   D  +  W     A + +    S  +     S D  YI 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 81  SASDDRTLRIWD 92
           + S D+   +++
Sbjct: 323 TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 6e-14
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 72  WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
            S+D   + +   D    +                +  +F + + P    +  G    ++
Sbjct: 191 ISNDGTKLWTGGLDN--TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV 248

Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK 191
            +  V      ++   H   V S+ F   G   VS   D     W    GA +    +  
Sbjct: 249 EVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 307

Query: 192 DPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
             +V     S + K+I+ G+ D    ++ 
Sbjct: 308 --SVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 58  HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP 117
           ++   H   +  L ++    +  S   D  L  W        +      S  V   + + 
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISV 316

Query: 118 QSNLIVSGSFDESIRIWEV 136
               IV+GS D+   ++EV
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 18  LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50
            +  S +V     S D   + + S DK   ++ 
Sbjct: 302 QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 95.0 bits (234), Expect = 5e-23
 Identities = 50/303 (16%), Positives = 99/303 (32%), Gaps = 12/303 (3%)

Query: 15  FKTLTAHSRA-VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS 73
           F +L   +R     +  +  G  +   +   +V      SL     +  HS   +    S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 74  SDSHYICSASDDRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQSNL--IVSGSFDES 130
              +Y  S      +RIWD       LKT +   S  V  ++++ +S     V    +  
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD 190
             ++   TG     +   +  + SV F       +    D        G     K+   +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT--- 247
               V   +++P+G        D T+ L+N   G    ++   + K    + +       
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 248 -NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT-CHPTENKIASAGLDGDRTV 305
            +G  I S S D  + +W++    + + +   T           T+  + S   +G   +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG--FI 305

Query: 306 RVW 308
              
Sbjct: 306 NFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.7 bits (158), Expect = 8e-13
 Identities = 47/258 (18%), Positives = 77/258 (29%), Gaps = 53/258 (20%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIW--SASSLALVHRFVGHSEGISDLAWS 73
           +  T HS   +  K S  G   AS  +   V IW  + ++  L       S  + D++W 
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 74  S--------------------------------------------DSHYICSASDDRTLR 89
           S                                               +   +  D    
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 90  IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS 149
                 PF    T   H+ FV  V +NP  +L  S   D +I ++    G  T V    S
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 150 MPV-------TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP 202
           +           + ++ DG+ I S S D T KIW+       KT+               
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 203 NGKFILVGTLDSTLKLWN 220
             + ++  + +  +   N
Sbjct: 292 TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 6   TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSE 65
           T             AHS +V  + +S DGT +ASAS DKT+ IW+ ++L +       + 
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281

Query: 66  -GISDLAWSSDSHYICSASDDRTLRIWD 92
                L        + S S +  +   +
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVN 309

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.4 bits (230), Expect = 3e-22
 Identities = 54/317 (17%), Positives = 97/317 (30%), Gaps = 28/317 (8%)

Query: 19  TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDS 76
           +     +SC  ++ D T +A    +  V I+  S      VH    H+  ++ + W+ DS
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 77  HYICSASDDRTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
           + I +   DR   +W  +         +   +    CV + P       GS    I I  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 136 VKTGK----CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA--------- 182
            +       C  + +     V S+ ++ +  L+ +GS D  C+I+ A             
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 183 --------CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT 234
                    L          V    FS NG  +   + DST+ L +      +      T
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294
                +T     T    + +G  D    ++            G  D     +      + 
Sbjct: 244 LPLLAVTFI---TESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 295 ASAGLDGDRTVRVWVQD 311
               LD   +       
Sbjct: 300 RFQNLDKKASSEGSAAA 316

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.7 bits (192), Expect = 3e-17
 Identities = 42/323 (13%), Positives = 89/323 (27%), Gaps = 71/323 (21%)

Query: 12  YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSA-------------------- 51
           +     L  H+  V+ V ++ D   + +   D+   +W+                     
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100

Query: 52  ----------------------------SSLALVHRFVGHSEGISDLAWSSDSHYICSAS 83
                                             H        +  L W  +S  + + S
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

Query: 84  DDRTLRIWDARTP-----------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126
            D   RI+ A                     + +        +V  V F+   + +   S
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 127 FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC-KIWDAGEGACLK 185
            D ++ + +         + + ++P+ +V F  + SL+ +G         +D+  G    
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 280

Query: 186 TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCIT-STF 244
               D     S    +   +F     LD        SA     + + H N    I+  + 
Sbjct: 281 GGRLDVPKQSSQRGLTARERF---QNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSG 336

Query: 245 SVTNGKYIVSGSEDNCVYVWDLQ 267
                    +   D  + +WD++
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
                    TL + +  +  V F  + +L+A+   D   ++++  S A    F G  +  
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP 287

Query: 68  SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN----LIV 123
              +    +      + D+      +      L +   H + V  ++             
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFC 345

Query: 124 SGSFDESIRIWEVKTGK 140
           +   D  + IW+V++ +
Sbjct: 346 TTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 17  TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
           +                       +LDK       S+ A       H   +S ++  S  
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGG 337

Query: 77  ----HYICSASDDRTLRIWDARTPFDCLKTLR 104
                  C+   D  + IWD R+    LK L+
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 91.6 bits (225), Expect = 5e-22
 Identities = 49/296 (16%), Positives = 97/296 (32%), Gaps = 9/296 (3%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSS 74
           +    H++A++ +  S DG  L SA  +  +  W  S+      F   H+  I+ +  +S
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
                  + DD    +    +  D  K +                  I   +  + I I+
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
                         S   + V  + D   +  G  D    ++     +  +         
Sbjct: 126 S----HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
           ++   FS NG F++       +  ++ +    L      T     +       +   + +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 255 GSEDNCVYVWDLQQKTMIQKL--DGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           GS DN V VW++ + +    +    H  S ++      E  I SAG D    ++ W
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS--NIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.0 bits (143), Expect = 6e-11
 Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 1/151 (0%)

Query: 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFA 198
           G   +V   H+  +T++  + DG  + S   +G    WD   G   +   D     ++  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 199 KFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258
           K +  G    V   D  LK+                             +G   V+    
Sbjct: 62  KTTSKGDLFTVSW-DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 259 NCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289
           +       +   +    +    ++ +     
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFV 151

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 8e-10
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 72  WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
            +         S                  +   H+  V CV+++P +  + +GS D S+
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248

Query: 132 RIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177
            +W +       +I   AH+M   +     + + IVS   D   K W+
Sbjct: 249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 5e-07
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 72  WSSDSHYICSASDDRTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
           WS D+  + + S D ++ +W+   P D  +     H+              IVS   D +
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291

Query: 131 IRIWEV 136
           I+ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 4/169 (2%)

Query: 58  HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP 117
              V  S   S +A S+D  ++     D  + ++              H   +  V F+ 
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL---IVSGSHDGTCK 174
               +V+      +  + V          + +     V           + +GS D +  
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 175 IWDAGEGACLKTLIDDKDP-AVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
           +W+  + +    +I      +   +    N   I+    DS +K WN  
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 38  ASASLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
           A+ SLD +VI+W+ +  +     +   H+    +     +   I SA  D  ++ W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.9 bits (226), Expect = 1e-21
 Identities = 53/358 (14%), Positives = 117/358 (32%), Gaps = 64/358 (17%)

Query: 9   YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS 68
           + P R   TL  H  +V       +   + + + DK + ++ + +   + +  GH  G+ 
Sbjct: 1   FVPQRT--TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW 57

Query: 69  DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
            L ++     +  ++D         +     +      +     +        IV+GS D
Sbjct: 58  ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVH---------------------FNRDGSLIVSG 167
            ++ +W++                   H                      +  G+++VSG
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177

Query: 168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL 227
           S+D T  +WD  +  CL  L       +    +    K  +  ++D+T+++W+   G+ +
Sbjct: 178 SYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 228 KIYTGHTNKKYC------------------------------------ITSTFSVTNGKY 251
               GHT                                            T    +   
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296

Query: 252 IVSGSEDNCVYVWDLQQKTMIQK-LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           +VSGS +N   +++L+   ++   +    D + SV     +  +A+   DG   + + 
Sbjct: 297 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 6/212 (2%)

Query: 11  PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDL 70
               +          S    S  G ++ S S D T+I+W  + +  ++   GH++ I   
Sbjct: 148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 207

Query: 71  AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
            +  +     SAS D T+RIWD                    V     S+  +  +  + 
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELM----YTLQGHTALVGLLRLSDKFLVSAAADG 263

Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD 190
                       +    H+       F    +++VSGS +    I++   G  +   I  
Sbjct: 264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 322

Query: 191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
               +    F      +     D    L    
Sbjct: 323 DADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 3e-20
 Identities = 51/353 (14%), Positives = 101/353 (28%), Gaps = 72/353 (20%)

Query: 17  TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS------LALVHRFVGHSEGISDL 70
              AH   +  V   N      S S D  + +W              +    H  G+  +
Sbjct: 9   AGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 71  AW-------SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS---- 119
                    + +   + + S    L  +      D  K +      +   +    S    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 120 -----------NLIVSGSFDESIRIWEV------------------KTGKCTRVIRAHSM 150
                      + +V+     +  IW+                   +           S 
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA-----VSFAKFSPNGK 205
             TSV  +  G LI +G ++GT +I +      L               +   KFSP G 
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 206 FILVGTLDSTL---KLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN----------GKYI 252
            + +    ++     L+    G+ +   +  T+        F+ ++          G+ +
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSV----ISVTCHPTENKIASAGLDG 301
            S   D  +  WD++ K  I  L+ H D +      +      + +A  G+  
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 1e-16
 Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 68/318 (21%)

Query: 54  LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-----PFDCLKTLRGHSD 108
           +A  +    H   I  ++  +   +  S S D  L++WD +      P D   +   H  
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 109 FVFCVNF-------NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
            +  V+          +  L+ + SF   +  + +     T+ +    + +      +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 162 ---------------SLIVSGSHDGTCKIWDAGEGACLKTLID----------------- 189
                            +V+    GT  IW     A     +                  
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY---TGHTNKKYCITSTFSV 246
                 +    S  G  I  G  + T+++   S  + L  +       N    I S    
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 247 TNGKYIVSGSEDNCVYVW----------------DLQQKTMIQKLDGHTDSVISVTCHPT 290
             G  +    + N                                  H+  V+S++ + +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300

Query: 291 ENKIASAGLDGDRTVRVW 308
              + SAG DG   +R W
Sbjct: 301 GETLCSAGWDG--KLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-15
 Identities = 46/367 (12%), Positives = 102/367 (27%), Gaps = 79/367 (21%)

Query: 3   AAQTPPYKPYRHFKTLTAHSRAVSCVKF-------SNDGTLLASASLDKTVIIWSASSLA 55
                   P     +   H   +  V         + +  L+A+ S    ++ +  +   
Sbjct: 41  NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100

Query: 56  LVHRFVGHSEG----------ISDLAWSSDS-----HYICSASDDRTLRIWDARTPFDC- 99
              + +                  L W + +     H + +     T  IW      D  
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160

Query: 100 ----------------LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE------VK 137
                           +++    S F   V+ +    LI +G  + +++I E      + 
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLY 219

Query: 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP---- 193
             +    +  +S  + SV F+  GSL+       +       E    + +     P    
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279

Query: 194 -----------AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
                       V    F+ +G+ +     D  L+ W+    + +     H +       
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339

Query: 243 TFSVT-NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301
             +V  +G  +      +   V  L++           +S+  V                
Sbjct: 340 ILAVDEHGDSLAEPGVFD---VKFLKKGWRSGMGADLNESLCCVCL-------------- 382

Query: 302 DRTVRVW 308
           DR++R +
Sbjct: 383 DRSIRWF 389

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 86.5 bits (212), Expect = 8e-20
 Identities = 29/313 (9%), Positives = 78/313 (24%), Gaps = 29/313 (9%)

Query: 17  TLTAHSRAVSCVKFSNDGTLLASASLD--KTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
                   +  V+   D  +           + I+   +     +F  +   +  +    
Sbjct: 37  LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFEENLGNVFAMGVDR 95

Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKT---------LRGHSDFVFCVNFNPQSNLIVSG 125
           +  +   A+D   +   D  T    +                +  F     P  +    G
Sbjct: 96  NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155

Query: 126 SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK 185
              ++I +++++  K        +    +  F+ D   +   S+       D        
Sbjct: 156 YVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214

Query: 186 T------LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF----LKIYTGHTN 235
                  +I     + +  K  P       G  D        S         ++     +
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274

Query: 236 KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295
                +         Y     E   +  +D++ +    K+    +++  +        + 
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVM 330

Query: 296 SAGLDGDRTVRVW 308
               DG   +  +
Sbjct: 331 VRKDDG--KIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 82.6 bits (202), Expect = 2e-18
 Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 17/197 (8%)

Query: 12  YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL-------ALVHRFVGHS 64
            R     T  +       F  D   L   S            L       +         
Sbjct: 168 GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227

Query: 65  EGISDLAWSSDSHYICSASDDRT------LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ 118
              +       S    +   D          I      +  +  L               
Sbjct: 228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 287

Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
           +           +  ++VKT K T         +T +  + D   ++    DG    +  
Sbjct: 288 AAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

Query: 179 GEGACLKTLIDDKDPAV 195
            +    +T+  DK P V
Sbjct: 344 EKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 74.1 bits (180), Expect = 1e-15
 Identities = 20/240 (8%), Positives = 55/240 (22%), Gaps = 22/240 (9%)

Query: 57  VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN 116
           +  F                H        + + ++D         T    +   +   F+
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFD 187

Query: 117 PQSNLIVSGSFDESIRIWEVKTGKCT-------RVIRAHSMPVTSVHFNRDGSLIVSGSH 169
             S  +   S+       +      +        VI                    +G +
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 170 DGT------CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223
           D          I        +   ++      S         +         L  ++   
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVI 283
            K +     +           S  + K ++   +D  +Y + L++    + ++     ++
Sbjct: 308 RK-VTEVKNNLT-----DLRLS-ADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (161), Expect = 4e-13
 Identities = 39/303 (12%), Positives = 74/303 (24%), Gaps = 33/303 (10%)

Query: 30  FS-NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD--R 86
           FS  DG L+A  S  +  I   + +       V     I  +    D+            
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYV---LKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 87  TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146
            L I+D RT     +    +   VF +  +      V  +    I   +++TGK T + R
Sbjct: 67  FLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 147 AHSMPVTSV----------HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS 196
           +    +T            +          G       ++D             ++    
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDY 182

Query: 197 FAKFSPNGKFILVGTLDSTLKLWN-------YSAGKFLKIYTGHTNKKYCIT----STFS 245
              F  + K +   +  S     +       +       +                S  S
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305
                 +    + +     D     MI  L+                    A   G   +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG--VL 300

Query: 306 RVW 308
             +
Sbjct: 301 LKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 19/206 (9%), Positives = 45/206 (21%), Gaps = 12/206 (5%)

Query: 110 VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169
            F  +F+P    +++        I +V      +V     + +  V    D  +      
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGT 62

Query: 170 DG--TCKIWDAGEGACLKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222
                  I+D   G   K       +       +            + T+D         
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV 282
                 + T  T         +          G     ++V+D++ + +           
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHD 181

Query: 283 ISVTCHPTENKIASAGLDGDRTVRVW 308
            +         +              
Sbjct: 182 YAPAFDADSKNLYYLSYRS--LDPSP 205

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (206), Expect = 4e-19
 Identities = 41/264 (15%), Positives = 78/264 (29%), Gaps = 18/264 (6%)

Query: 21  HSRAVSCVKFS--NDGTLLASASLDKTVIIWSASSLALVHRFV--------GHSEGISDL 70
            S  V+ VKFS       L S      VI+W  +     +             +  ISD+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 71  AWSSDSHYI--CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128
           +W  +   +       D         +     +          C     +    ++   D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 129 ESIRIWEVKTGKCTRVIR---AHSMPVTSVHFNRDGSLIVSGSHDGTCKIW---DAGEGA 182
            S+  ++    K +   R        V  V F+ D    V               +GE  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
                  +      FA    + +       D+T+++W+ +  K ++ +T    +      
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 243 TFSVTNGKYIVSGSEDNCVYVWDL 266
               T    I+S S D  +  ++L
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (199), Expect = 3e-18
 Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 24/306 (7%)

Query: 25  VSCVKFSNDGTLLASASLDKTVIIW---SASSLALVHRFVGH-SEGISDLAWS--SDSHY 78
            + + +      +A        +       S +  V +F GH S  ++ + +S    S Y
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 79  ICSASDDRTLRIWDART-------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DE 129
           +CS  +   + +W             +     +  +  +  ++++ +   +       D 
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI- 188
                   +G     +  HS  + + H  +   +      D    ++  G          
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 189 ---DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS 245
                            +G+F++    D  +  ++  +G+FLK                S
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259

Query: 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV--ISVTCHPT-ENKIASAGLDGD 302
             + +   +   D  + VWD+     +QK       +    V    T   +I S  LDG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG- 318

Query: 303 RTVRVW 308
            T+  +
Sbjct: 319 -TLNFY 323

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.0 bits (195), Expect = 7e-18
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 33/302 (10%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           KT++ H++ ++ +  +     L S S D  ++ WS+SS         HS  I  L  S  
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKA 57

Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
             Y           I    T      T           + N      V  + D+ + +  
Sbjct: 58  QEYSS---------ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195
                   +         S        + V      T +++   +      L        
Sbjct: 109 FT---GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165

Query: 196 SFAKFSPNGKFILVGTLDS--------TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247
           S+   SP+  +I  G +          + ++               + K     +     
Sbjct: 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 225

Query: 248 NGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306
               + +GS D  ++++ +++   +I+ L+ H D V ++      + + S+G D    ++
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADA--CIK 282

Query: 307 VW 308
            W
Sbjct: 283 RW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 1e-11
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 58  HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP 117
           +                +   + + S D  + I+  + P   +K L  H D V  + +  
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268

Query: 118 QSNLIVSGSFDESIRIWEV 136
             + +VS   D  I+ W V
Sbjct: 269 -PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 2e-08
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 5   QTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS-ASSLALVHRFVGH 63
            +           ++         +   +  L+A+ SLD  + I+S    + ++     H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 64  SEGISDLAWSSDSHYICSASDDRTLRIWD 92
            +G+++L W +    + S+  D  ++ W+
Sbjct: 258 KDGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 3e-08
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 99  CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN 158
            LKT+ GH+  +  +  NP    ++SGS+D  I  W   +         HS  + S+  +
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55

Query: 159 RDGSLIVSGSHDGTCKIW 176
           +          D      
Sbjct: 56  KAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188
           E               I        +     +  L+ +GS D    I+       +   +
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 189 DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220
           +     V+   +      +  G  D+ +K WN
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGA-DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 5e-05
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183
             +  + I  H+  +T++  N     ++SGS+DG    W +     
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.3 bits (179), Expect = 4e-15
 Identities = 26/307 (8%), Positives = 71/307 (23%), Gaps = 30/307 (9%)

Query: 33  DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92
           +     +      + +   S+  +          +     S+   Y+     D  + + D
Sbjct: 31  ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID 89

Query: 93  ART----PFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRA 147
                      +K                +    I    +     I + +T +  ++   
Sbjct: 90  LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

Query: 148 HSMPV-----------TSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195
             M              ++  +      IV+    G   + D  +   LKT     +  +
Sbjct: 150 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209

Query: 196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY----CITSTFSVTNGKY 251
                  + ++ +         +   +    L        +                  +
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269

Query: 252 IVSGSEDNCVYVWDLQQKT-------MIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDR 303
             S   D+ V +     +        ++          + +  HP        A L+ + 
Sbjct: 270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 329

Query: 304 TVRVWVQ 310
            +   V 
Sbjct: 330 EISGSVA 336

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.5 bits (151), Expect = 1e-11
 Identities = 19/214 (8%), Positives = 59/214 (27%), Gaps = 16/214 (7%)

Query: 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173
           +++ ++   V+      I + +  T +   V+            +  G  +     DG  
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKV 85

Query: 174 KIWD--AGEGACLKTLIDDKDP--AVSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKFLK 228
            + D    E   +  +    +     +        K+ +          + +    +  K
Sbjct: 86  NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145

Query: 229 IYTGHTNKKYCITS---------TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT 279
           I +                      S    ++IV+  E   + + D      ++  +   
Sbjct: 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205

Query: 280 DSVIS-VTCHPTENKIASAGLDGDRTVRVWVQDR 312
           +  +       +     +A    ++ V +  ++ 
Sbjct: 206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 34/304 (11%), Positives = 72/304 (23%), Gaps = 30/304 (9%)

Query: 24  AVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-----VHRFVGHSEGISDLAWSSDSHY 78
           AV   + S  G  L     D  V +             +          +      +  Y
Sbjct: 63  AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 79  IC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN------------LIVSG 125
               A       I D     +  K             ++P+               IV+ 
Sbjct: 123 AIAGAYWPPQYVIMDG-ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 126 SFDESIRIWEVKTGKCTRVIRAHSMPVTS-VHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
                I + +       +     +         +      ++ ++     +    +   L
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF 244
             + D             N      G + +T  + + S         GH +  + I  +F
Sbjct: 242 VAIEDTGGQTPHPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 300

Query: 245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT 304
               G  +   +  N  Y++      +   L+   +   SV        +   G   D  
Sbjct: 301 PALGGGSLFIKTHPNSQYLY------VDATLNPEAEISGSV-AVFDIKAMTGDGS--DPE 351

Query: 305 VRVW 308
            +  
Sbjct: 352 FKTL 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 26/234 (11%)

Query: 17  TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS 76
           T  +  R +             +A+  +  ++   +    +                ++ 
Sbjct: 201 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 260

Query: 77  HYICSASDDRTLRIWDARTPFD--CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
            +        T  + D          +    ++  +           +   +   S  ++
Sbjct: 261 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
              T          +    SV    D   +     D   K     E A +    + +   
Sbjct: 321 VDATLN------PEAEISGSVAVF-DIKAMTGDGSDPEFKTLPIAEWAGIT---EGQPRV 370

Query: 195 VSFAKFSPNGKFILVGTL-------------DSTLKLWNYSAGKFLKIYTGHTN 235
           V    F+ +G  +                  D TL+L +    + L   TG  N
Sbjct: 371 VQGE-FNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFN 423

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.2 bits (170), Expect = 3e-14
 Identities = 26/309 (8%), Positives = 74/309 (23%), Gaps = 47/309 (15%)

Query: 17  TLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFVGHS-----EGISDL 70
           T+            +  G    A+ +  ++++     +   + R    +     + +   
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87

Query: 71  AWSSDSHYICSASDDRTLRIWDARTPFDC----------LKTLRGHSDFVFCVNFNPQSN 120
           A S D   +        L +                    +        +  + +    +
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-----------------------VTSVHF 157
            +     D  + + + + G         S                               
Sbjct: 148 KLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK 217
            +D       ++       D   G      +   D        +P           + L+
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGAYNVLE 263

Query: 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277
            ++      +K      +  Y +    S T+G  +  G     +  +D +      ++D 
Sbjct: 264 SFDLEKNASIK-RVPLPHSYYSVN--VS-TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

Query: 278 HTDSVISVT 286
             ++ +S+ 
Sbjct: 320 PGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 26/270 (9%), Positives = 61/270 (22%), Gaps = 34/270 (12%)

Query: 4   AQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH 63
             T          T     +++     S DG  LA       + +               
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 64  SEG-----------ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT---------- 102
                         I+ LAW+ D   +     D  +   +A T  +              
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 103 ----------LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV 152
                                      +     ++   +   +++TG+            
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 153 TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212
                  + +   +       + +D  + A +K +      +      S +G  + +G  
Sbjct: 243 Y-FSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGA 299

Query: 213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242
              L  ++    +         N    + S
Sbjct: 300 LGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 17/175 (9%), Positives = 47/175 (26%), Gaps = 17/175 (9%)

Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP--VTSVHFNRDGS-LIVSGSHDGTCKIW 176
           + I++ +  + + + + +     +VI                 G     + +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 177 DAGEGACLKTLIDDKDPAVSFA----KFSPNGKFILVGTLDSTLKLWNYSAG-------- 224
           D   G  L  +          +      SP+GK + +      L+L ++           
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 225 -KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH 278
            + L         +      ++  +G  +     D  V   +       + +   
Sbjct: 122 AETLSRRKAFEAPRQITMLAWA-RDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 8/53 (15%), Positives = 15/53 (28%)

Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS 73
              +   V  S DG+ +        +  + A +L    +          LA  
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 9/84 (10%), Positives = 23/84 (27%)

Query: 205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264
            +IL       L + +       K+ T        +    +        + ++   +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 265 DLQQKTMIQKLDGHTDSVISVTCH 288
           DL     + ++D  T      +  
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLF 85

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 20/189 (10%), Positives = 54/189 (28%), Gaps = 24/189 (12%)

Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-----RFVGHSEGISDLAW--- 72
             R V  ++ ++DG+L  +      + + +      +      R    +  +        
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 73  --------------SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ 118
                           D     +A         D +T     +     ++  F    +P+
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 119 SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178
               + G  +  +  +++K  K  +           V F++ G  +  G       +++ 
Sbjct: 263 DPNQIYGVLNR-LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 179 GEGACLKTL 187
                +K +
Sbjct: 321 DTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 66.7 bits (161), Expect = 4e-13
 Identities = 36/315 (11%), Positives = 66/315 (20%), Gaps = 57/315 (18%)

Query: 21  HSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRF------VGHSEGISDLAWS 73
                     + D  T     +    +      +                   +   A S
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 74  SDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-------------DFVFCVNFNPQSN 120
            D   + +  +               L+                     V+ +      +
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-------------------------VTSV 155
           L V+G         +VKTGK T  +   +                            T  
Sbjct: 158 LYVAGPDI---YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

Query: 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215
            F  D     +          D   G        D          SP     + G   + 
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNR 273

Query: 216 LKLWNYSAGKFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK 274
           L  ++    K +K     HT              G  +  G   N + V++      ++ 
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDK-----KGDKLYLGGTFNDLAVFNPDTLEKVKN 328

Query: 275 LD--GHTDSVISVTC 287
           +   G   S  +   
Sbjct: 329 IKLPGGDMSTTTPQV 343

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 24/280 (8%), Positives = 57/280 (20%), Gaps = 45/280 (16%)

Query: 70  LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSN-LIVSGSF 127
            A  +   Y+   +    L + D  +     K+               P +    V  + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 128 DESIRIWEVKTGKCTRVIR------AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181
              I   ++ T K T               + S   + DG  + +  +            
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 182 ACLKTLIDDKDPA-------------VSFAKFSPNGKFILVGTLDSTLKLWN-------- 220
                +    D               V   + + +G   + G     + +          
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180

Query: 221 -----------YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269
                           F    +         T      + +   +          DL+  
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 270 TMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
               +     T+   +    P +             +  +
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIY---GVLNRLAKY 277

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 7/143 (4%)

Query: 21  HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYI 79
            S   +  +F +D    A+A L    +     +     +     +E       S      
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266

Query: 80  CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG 139
                +  L  +D +     +K         +CV F+ + + +  G     + ++   T 
Sbjct: 267 IYGVLN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323

Query: 140 KCTRVIRAH--SMPVTSVH-FNR 159
           +  + I+     M  T+   F R
Sbjct: 324 EKVKNIKLPGGDMSTTTPQVFIR 346

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.5 bits (161), Expect = 7e-13
 Identities = 20/194 (10%), Positives = 52/194 (26%), Gaps = 6/194 (3%)

Query: 113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172
            + +  +   V+      I + +  + K  +VI            +  G  ++    D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84

Query: 173 CKIWDAGEGACLKTL----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228
             + D       K        +     S        ++ + G                  
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP- 143

Query: 229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288
                T      T T+        +  S ++  ++ ++++   +  ++      ++VT  
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 289 PTENKIASAGLDGD 302
                +A  G D  
Sbjct: 204 GAAPFLADGGWDSS 217

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 28/258 (10%), Positives = 78/258 (30%), Gaps = 21/258 (8%)

Query: 70  LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE 129
                 + +  +  D   + + D  +    +K +      V     +     ++    D 
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDA 83

Query: 130 SIRIWEVKTGKCTRVIR-----AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184
            I + ++   + T+V             +S     +    ++G++         GE    
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 185 KTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243
           K ++  +   V    + P  +   ++ + +    + N      + +          +TS 
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 244 ----------FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT---CHPT 290
                     +  ++  ++ + +  N V V D + + +   +D              HP 
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 263

Query: 291 ENKIASAGLDGDRTVRVW 308
              + S    GD ++ + 
Sbjct: 264 YGPVWSTSHLGDGSISLI 281

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 26/253 (10%), Positives = 66/253 (26%), Gaps = 48/253 (18%)

Query: 28  VKFSNDGTLLASASLD--KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD 85
           +  S++         +  K +++       L    +G +  ++D  W S   Y  +A+++
Sbjct: 168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN 227

Query: 86  RTLRIW---------------DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
                                    P      +      V+  +     ++ + G+  ++
Sbjct: 228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287

Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG-------SLIVSGSHDGTCKIWDAGEGAC 183
              +     K    ++        +  +          +         +  ++D      
Sbjct: 288 HPQY---AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344

Query: 184 LKTLIDDKDPA--------VSFAKFSPNGKFILVGTL-------------DSTLKLWNYS 222
              ++   + A        V   +++  G  +                  D TLKL    
Sbjct: 345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 404

Query: 223 AGKFLKIYTGHTN 235
               L   TG  N
Sbjct: 405 KDPRLITPTGKFN 417

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 33/304 (10%), Positives = 82/304 (26%), Gaps = 33/304 (10%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-----LALVHRFVGHSEGISDL 70
           K +     AV   + S  G  L     D  + +    +     +A +   +      S  
Sbjct: 56  KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114

Query: 71  AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDE 129
               +  Y  + +              +  + +      V    ++P+  +  +  S + 
Sbjct: 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174

Query: 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID 189
              I  VK      ++    +   +V        +  G  D + + +        K  + 
Sbjct: 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI 234

Query: 190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249
           D       A              +                      K   + ST  + +G
Sbjct: 235 DSKDRRLSALVDVGKTPHPGRGANF------------------VHPKYGPVWSTSHLGDG 276

Query: 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA-----SAGLDGDRT 304
              + G++      +  ++   + +L G     + +  HP  + +      +      ++
Sbjct: 277 SISLIGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 305 VRVW 308
           V V+
Sbjct: 334 VAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 8   PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI 67
              P R    +      V       DG++    +  K    ++      V    G   G 
Sbjct: 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK---KVAELQGQGGGS 306

Query: 68  SDLAWSSDSHYIC-------SASDDRTLRIWDART--------PFDCLKTLRGHSDFVFC 112
             +     S ++         A   +++ ++D +         P      L   +  V  
Sbjct: 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366

Query: 113 VNFNPQSNLIV-----SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN 158
             +N + + +        +   ++ + + KT K   V++   +   +  FN
Sbjct: 367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFN 417

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.3 bits (150), Expect = 1e-11
 Identities = 22/289 (7%), Positives = 60/289 (20%), Gaps = 39/289 (13%)

Query: 31  SNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISD-------LAWSSDSHYI-CSA 82
           S      A       V ++   +   +                   +   + S  +    
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142

Query: 83  SDDRTLRIWDARTPFDCLKTLRGHSDFVF-------CVNFNPQSNLIVSGSFDESIRIWE 135
                             +  +  S F             +  ++L  S           
Sbjct: 143 FGSSAAAGLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201

Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195
           V      +   A +    +   N  G L+ + +         A        + D  +   
Sbjct: 202 VGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI-DGNESGR 256

Query: 196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS---TFSVTNGKYI 252
               F   G  ++    ++   +          +           +    +  ++NG   
Sbjct: 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS 316

Query: 253 --------------VSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVISVT 286
                          + +    + ++D         ++       +SV 
Sbjct: 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.9 bits (149), Expect = 2e-11
 Identities = 23/282 (8%), Positives = 52/282 (18%), Gaps = 39/282 (13%)

Query: 51  ASSLALVHRFVGHSEGISDLAWSSDSH--YIC---SASDDRTLRIWDARTPFDCLKTLRG 105
           A S A             D    + S   +I      +      +  A      L    G
Sbjct: 6   AGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG-VTLGHSLG 64

Query: 106 HSDFVFCVNFNP----------QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT-- 153
              F+                        G   + + +++  T      I     P    
Sbjct: 65  A--FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 154 -----SVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVS------FAKFS 201
                 +      + L+                 +  +         +           S
Sbjct: 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGS 182

Query: 202 PNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV 261
                       +        A                  +  +   G  + + +     
Sbjct: 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCS-------SQAAQANYPGMLVWAVASSILQ 235

Query: 262 YVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303
                   TM   +DG+     +        ++ +   + D 
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 17/191 (8%), Positives = 43/191 (22%), Gaps = 27/191 (14%)

Query: 18  LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH 77
                 A +    S   +L AS             +          +        +    
Sbjct: 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGM 224

Query: 78  YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES------- 130
            + + +         A         + G+       NF      +V+   +         
Sbjct: 225 LVWAVASSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283

Query: 131 ------------IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS--LIVSGSHDGTCKIW 176
                               G+ +  I ++     ++   +DG+     + +      I+
Sbjct: 284 EHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342

Query: 177 DAGEGACLKTL 187
           DA       ++
Sbjct: 343 DAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 12/157 (7%), Positives = 39/157 (24%), Gaps = 23/157 (14%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           +   A + +    + +  G L+ + +         A+   +     G+  G     + S 
Sbjct: 205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264

Query: 76  SHYICSASDD-------------------RTLRIWDARTPFDCLKTLRGHSDFVFCVNFN 116
              + +   +                          A         +  +      +   
Sbjct: 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPI-SNGHDSDAIIAA 322

Query: 117 P--QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP 151
               S+   + +  E + I++  + +    +     P
Sbjct: 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 59.9 bits (145), Expect = 9e-11
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 54/324 (16%)

Query: 13  RHFKTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDL 70
           + +     H   +S      DG  L  +   +  V       +       + + + I  L
Sbjct: 62  QQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGL 121

Query: 71  AWSSDSH--YICSAS--------DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS- 119
                    Y+   +        D     + ++ T F  +        +   V+ N  + 
Sbjct: 122 RLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNT 181

Query: 120 -------NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172
                      +    E               +   ++        + G+    G     
Sbjct: 182 DADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER-IAAAVKAGNFKTIGDS-KV 239

Query: 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKFLKIYT 231
             +   GE    + +   K+P       SP+GK+ +  G L  T+ +      K   ++ 
Sbjct: 240 PVVDGRGESEFTRYIPVPKNP--HGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDLFE 295

Query: 232 GHTNKKYCI-----------TSTFSVTNGKYIVSGSEDNCVYVWDLQQ----------KT 270
                +  I            +TF    G    +   D+ V  W++              
Sbjct: 296 DKIELRDTIVAEPELGLGPLHTTFD-GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNY 354

Query: 271 MIQKLD-----GHTDSVISVTCHP 289
           + QKLD     GH  + ++ +   
Sbjct: 355 IRQKLDVQYQPGHNHASLTESRDA 378

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 40/272 (14%), Positives = 74/272 (27%), Gaps = 43/272 (15%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD 75
           KT      A   +   NDGT  +  +         A ++ +  + +     + +      
Sbjct: 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYT 186

Query: 76  SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135
             Y  S   +    +  A T  +    +    +           N    G   +   +  
Sbjct: 187 GKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD-SKVPVVDG 244

Query: 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK---- 191
               + TR I     P            I +G    T  +    +   L  L +DK    
Sbjct: 245 RGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK---LDDLFEDKIELR 301

Query: 192 ---------DPAVSFAKFSPNGKFILVGTLDSTLKLWN-------YSAGKFLKI------ 229
                            F   G       +DS +  WN       Y+  +   I      
Sbjct: 302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDV 361

Query: 230 -Y-TGHTNKKYCITSTFSVT---NGKYIVSGS 256
            Y  GH +      ++ + +   +GK++V  S
Sbjct: 362 QYQPGHNH------ASLTESRDADGKWLVVLS 387

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 14/108 (12%)

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182
            SG     +R+  V + +    I     PV    FN D +    G  + + +I    +  
Sbjct: 15  WSGGHQGEVRVLGVPSMRELMRI-----PV----FNVDSAT-GWGITNESKEILGGDQQ- 63

Query: 183 CLKTLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKFLKI 229
                 D   P +S      +GK++ +    ++ +        K  KI
Sbjct: 64  --YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI 109

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 28/265 (10%), Positives = 63/265 (23%), Gaps = 42/265 (15%)

Query: 71  AWSSDSHYI-----CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI--- 122
           A + D+  +        +      + D       +  + G   F+         + I   
Sbjct: 8   APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGG--FLPNPVVADDGSFIAHA 64

Query: 123 -------VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI---------VS 166
                    G   + + +++  T   T  I     P   V      + +           
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAV------SFAKFSPNGKFILVGTLDSTLKLWN 220
            S      + D    A  + L       +      +F     +G    V           
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI- 183

Query: 221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ--QKTMIQKLDGH 278
                       H   ++ I           +V  +    ++  DL       +  ++  
Sbjct: 184 ------THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237

Query: 279 TDSVISVTCHPTENKIASAGLDGDR 303
           T++  +    P   +  +     DR
Sbjct: 238 TEAERADGWRPGGWQQVAYHRALDR 262

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 30/316 (9%), Positives = 67/316 (21%), Gaps = 48/316 (15%)

Query: 19  TAHSRAVSCVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRF-------- 60
                 +     ++DG+ +A AS              V ++   +L              
Sbjct: 43  MIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102

Query: 61  -VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS 119
            VG    ++ L     +      S    + + D           R          F    
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDCYHIFPTAP 158

Query: 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSM------PVTSVHFNRDGSLIVSGSHDGTC 173
           +       D S+      T     +             +    +++    +V  ++ G  
Sbjct: 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI 218

Query: 174 KIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
              D   G       ++    A     + P G   +                   +  T 
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 233 HTNKKYCITSTFSVT------------------NGKYIVSGSEDNCVYVWDLQQKTMIQK 274
                     T                              + D  +Y+ D +    ++ 
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338

Query: 275 LDGHTDSVISVTCHPT 290
           ++        +T    
Sbjct: 339 VNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 17/160 (10%), Positives = 41/160 (25%), Gaps = 4/160 (2%)

Query: 4   AQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH 63
                 +        T   +       S D   L +                   +   H
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 64  SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP--QSNL 121
                              +  R + + DA+T  + L       + +  +N +   +  L
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE-IDSINVSQDEKPLL 315

Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161
               + D+++ I + ++G+  R +         +     G
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEG 181
           ++ S  ++I + +V + K T  I   S P      + DG+ + V+ +H     I D    
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 182 AC 183
             
Sbjct: 65  NV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.9 bits (104), Expect = 5e-06
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 2/123 (1%)

Query: 72  WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131
                 Y+ +        I            +      +       ++ +     +  ++
Sbjct: 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226

Query: 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLIDD 190
            + +  T K T  I     P   +    DG  + V+ S   T  + D        T+   
Sbjct: 227 SMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG 285

Query: 191 KDP 193
           K+P
Sbjct: 286 KNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 31/261 (11%), Positives = 70/261 (26%), Gaps = 5/261 (1%)

Query: 16  KTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS 74
            T+   S  +     S DGT +  + +    V I   ++  ++      S          
Sbjct: 26  ATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD 84

Query: 75  DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134
                 +     TL + D  +      T++     +          L V+ + D+++ + 
Sbjct: 85  GKQVYVTNMASSTLSVIDTTS-NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143

Query: 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA 194
              T      +     P           + V+     +  + D    + + T+  +  P+
Sbjct: 144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS 203

Query: 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254
                      ++              +    +            I    +    K  V+
Sbjct: 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIA--VTPDGKKVYVA 261

Query: 255 GSEDNCVYVWDLQQKTMIQKL 275
            S  N V V D    T+   +
Sbjct: 262 LSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 2/87 (2%)

Query: 72  WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDES 130
                 Y+ +                     +    D    +   P    + V+ SF  +
Sbjct: 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNT 267

Query: 131 IRIWEVKTGKCTRVIRAHSMPVTSVHF 157
           + + +  T   T  +     P  S  F
Sbjct: 268 VSVIDTATNTITATMAVGKNPYASGQF 294

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 3/108 (2%)

Query: 165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSA 223
           ++ S      + D        T+    +P    A  SP+G  + V     + + + + + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP--MGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM 271
              +      ++ +    S          ++ S  + +          
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 81  SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTG 139
           + S+   + + D  +      T+   S+       +P    + V+ +    + I +  T 
Sbjct: 7   ANSESDNISVIDVTS-NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 140 KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176
                + A S P           + V+     T  + 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI 101

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308
           ++ SE + + V D+    +   +     + +     P   K+  A       V + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVAN-AHSNDVSII 59

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 26/296 (8%), Positives = 66/296 (22%), Gaps = 25/296 (8%)

Query: 17  TLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAW 72
            +      V  +  S D   L      +  V+ +  +                 ++ ++ 
Sbjct: 31  QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90

Query: 73  SSDSHYICSASDDRTLRIW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130
                ++   S +                +  +    D     N +P +  +   +  + 
Sbjct: 91  DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD 150

Query: 131 IRIW-----------------EVKTGKCTRVIRAHSMPVTSVHFNRD-GSLIVSGSHDGT 172
                                    G   R +  H     +   N    S+ V    D  
Sbjct: 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 210

Query: 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG 232
             I        +     D   A                   S + +++ S    +    G
Sbjct: 211 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 270

Query: 233 HTNKKYCITS-TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC 287
               +          +    I +G + + + V+++  +  +    G          
Sbjct: 271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMW 326

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 13/178 (7%), Positives = 40/178 (22%), Gaps = 5/178 (2%)

Query: 117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGS-LIVSGSHDGTC 173
            +  + ++    + I +W +       + +       V  +  + D   L V    +   
Sbjct: 2   LKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV 61

Query: 174 KIWDAGEGACLKTLIDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT 231
             +         T   +     +++       G+F+ VG+ ++                 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 232 GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289
                     S     + + +   +                       +        P
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 179

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 14/238 (5%)

Query: 3   AAQTPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG 62
           A    P   +    T +  S   +          +         + W+      +     
Sbjct: 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR 280

Query: 63  HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLI 122
                       D     S   +  +                  S+  F ++ N    +I
Sbjct: 281 IQNYSVMDICDYDES---SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337

Query: 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC--------K 174
            +      I  +++    CT + +     +       D    +S  + G          +
Sbjct: 338 SNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQ 397

Query: 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV---GTLDSTLKLWNYSAGKFLKI 229
           + D  +  CL   ++ +        FS   K+  +   G       L +    K L++
Sbjct: 398 LSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 27/244 (11%), Positives = 64/244 (26%), Gaps = 27/244 (11%)

Query: 16  KTLTAHSRAVSCVKFSNDGTLLASASLDK---------TVIIWSASSLALVH---RFVGH 63
           + + ++   ++  +F  DG  +A   +                +     + +   +  G 
Sbjct: 34  RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGR 93

Query: 64  SEGISDLAWSSDSHYICSASDDRT--LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121
                   +  D + I S    +         R   D +  +  +      + F     +
Sbjct: 94  RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRV 153

Query: 122 IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-- 179
           I   +F+           +    I  +S     +                   I D    
Sbjct: 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGF 213

Query: 180 --------EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT 231
                   +G  L+      D        + +G+ I + +   ++ ++N    K  KI  
Sbjct: 214 GQIYSTDLDGKDLRKHTSFTDYYPRH--LNTDGRRI-LFSKGGSIYIFNPDTEKIEKIEI 270

Query: 232 GHTN 235
           G   
Sbjct: 271 GDLE 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.48
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.36
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.42
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.1
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.66
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.36
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.97
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.74
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.34
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.87
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.98
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.74
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.46
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.8
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	84.04
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.73

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-46  Score=306.02  Aligned_cols=287  Identities=31%  Similarity=0.587  Sum_probs=256.4

Q ss_pred             eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459           16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART   95 (312)
Q Consensus        16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~   95 (312)
                      .+|.+|+++|++++|+|++++|+||+.||+|++||+.+++.+..+.+|...|.+++|+|++.+++++..++.+.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      . .......+|...+.++.++|+++.+++++.|+.+++||+++++....+..|...+.+++|+|+++++++++.|+.+++
T Consensus        91 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          91 F-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  169 (317)
T ss_dssp             S-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             c-ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence            4 445566778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCC--------------------CCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPN--------------------GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN  235 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  235 (312)
                      |+..++.....+.. +...+..+.++|+                    +.++++++.|+.|++||.++++.+..+.+|..
T Consensus       170 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         170 WVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EeeccceeeEEEec-CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99998877766543 3344555555543                    45789999999999999999999999988877


Q ss_pred             ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          236 KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ....   ....+++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+++|.|  ++|+||+
T Consensus       249 ~v~~---~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D--g~i~iWd  317 (317)
T d1vyhc1         249 WVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--QTVKVWE  317 (317)
T ss_dssp             CEEE---EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--SEEEEEC
T ss_pred             CEEE---EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEeC
Confidence            6433   3445789999999999999999999999999999999999999999999999999955  6999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-46  Score=307.83  Aligned_cols=287  Identities=21%  Similarity=0.321  Sum_probs=245.4

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce-----EEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-----VHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      +...++ .|..+|++++|+|+|++|+||+ ||.|+|||+.+...     .....+|...|.+++|+|++++|++++.|+.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            334444 7999999999999999999987 89999999876432     2234578899999999999999999999999


Q ss_pred             EEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459           88 LRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS  166 (312)
Q Consensus        88 v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
                      |++||+.... +....+..|...+.++.|+|++..+++++.++.|++||+.+++.......|...+.+++|++++..+++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999986532 345567788899999999999999999999999999999999998888889999999999999999999


Q ss_pred             eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV  246 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
                      ++.|+.+++||+++++.+..+.  ....+..++|+|++++|++++.|+.+++||++.++... ...|....   ......
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i---~~v~~s  274 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCV---LSLKFA  274 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCE---EEEEEC
T ss_pred             ccccccccccccccceeecccc--cccceEEEEEcccccccceecccccccccccccccccc-cccccccc---ceEEEC
Confidence            9999999999999988776553  34567888999999999999999999999998887654 33455443   333445


Q ss_pred             cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      +++++|++|+.||.|++||+.+++.+..+. |...|.+++|+|++++|+++|.  |++|+||++
T Consensus       275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~--D~~I~vWdl  335 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG--DKKATVYEV  335 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEET--TSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeC--CCeEEEEEE
Confidence            789999999999999999999888876654 7889999999999999999995  469999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-43  Score=290.10  Aligned_cols=293  Identities=27%  Similarity=0.459  Sum_probs=251.5

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .+..++|.||+++|++++|+|++++||||+.||.|++||..+++.+..+..|...|.+++|+|++.++++|+.|+.+.+|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           92 DARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        92 d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      +.....   .....+.+|........... ...+.....+.....++............+...+....+.+.+.++++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            975432   23445566776666555444 56777888899999999888877777777788899999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      .|+.+++||+++++....+.. +...+..++|+|++++|++++.|+.|++||++....+..+....... .+......++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~  281 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKS  281 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS-CEEEEEECSS
T ss_pred             cCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC-ceEEEEECCC
Confidence            999999999999988877654 45678889999999999999999999999999888777664333222 2333445578


Q ss_pred             CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|++++|+++|.|  ++|+||+
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D--g~v~iWd  340 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD--SFLKIWN  340 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT--SCEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC--CEEEEeC
Confidence            9999999999999999999999999999999999999999999999999955  5899996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-44  Score=301.06  Aligned_cols=286  Identities=32%  Similarity=0.592  Sum_probs=234.9

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee------------------eccCCEEEEEEccCCCeEE
Q 021459           19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV------------------GHSEGISDLAWSSDSHYIC   80 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~   80 (312)
                      .+|++.|+|++|+|+|++||+|+ |+.|++|++.+++.+..+.                  .|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8999999999887766553                  3566799999999999999


Q ss_pred             EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC
Q 021459           81 SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD  160 (312)
Q Consensus        81 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
                      +|+.||.|++||.... +.+....+|...|.++.+++++..+++++.++.+++||.++.........+...+....+.++
T Consensus       138 s~~~dg~v~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         138 TGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             EEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             eccccccccccccccc-ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            9999999999999875 556777889999999999999999999999999999999998877766655554444444558


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEccc------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE------
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLID------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK------  228 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~------  228 (312)
                      +++|++++.|+.|++||..++.....+..      .+...+..+.|+|++++|++++.|+.|++||++++....      
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence            89999999999999999998876655422      234568889999999999999999999999997654322      


Q ss_pred             ------EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE------cCCCceEEE
Q 021459          229 ------IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC------HPTENKIAS  296 (312)
Q Consensus       229 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~------~p~~~~l~~  296 (312)
                            ....|...   +......+++++|++|+.||.|++||+.+++++..+++|.+.|.++++      +|++++|++
T Consensus       297 ~~~~~~~~~~~~~~---v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         297 SGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             --CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             ccceeeecccccce---EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence                  22333333   233344578899999999999999999999999999999999999975      678999999


Q ss_pred             eeecCCeeEEEEeec
Q 021459          297 AGLDGDRTVRVWVQD  311 (312)
Q Consensus       297 ~~~dgd~~v~iw~~~  311 (312)
                      +|.|  ++|+||++.
T Consensus       374 ~s~D--g~I~iW~~~  386 (388)
T d1erja_         374 GSGD--CKARIWKYK  386 (388)
T ss_dssp             EETT--SEEEEEEEE
T ss_pred             EeCC--CEEEEEeee
Confidence            9955  699999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-43  Score=289.59  Aligned_cols=284  Identities=17%  Similarity=0.220  Sum_probs=237.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee-
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC-   99 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~-   99 (312)
                      +.+....++++|+|+.|+.+. ++.+.+|++.+.+....+.+|...|++++|+|+|++|++|+.||.|++||+...... 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            445667789999999999885 567999999999888888999999999999999999999999999999999875433 


Q ss_pred             eeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE-EEEeeCCCeEEEE
Q 021459          100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL-IVSGSHDGTCKIW  176 (312)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iw  176 (312)
                      ...+.+|.+.|.+++|+|+++++++++.+  ..+++|++++++....+..|...|++++|+|++++ +++|+.|+.|++|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            34567899999999999999999998764  56999999999888888999999999999999885 7889999999999


Q ss_pred             eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-------cCCceeEEEEEEEccCC
Q 021459          177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-------HTNKKYCITSTFSVTNG  249 (312)
Q Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  249 (312)
                      |+++++....+. .+...+..+.++|+++++++++.|+.|++||..+++....+..       |...   +......+++
T Consensus       175 d~~~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~---V~~~~~s~~~  250 (311)
T d1nr0a1         175 EGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS---VFGLTWSPDG  250 (311)
T ss_dssp             ETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC---EEEEEECTTS
T ss_pred             cccccccccccc-cccccccccccCcccccccccccccccccccccccccccccccccccccccccc---ccccccCCCC
Confidence            999888776654 3456688899999999999999999999999999887776543       3333   3333445789


Q ss_pred             cEEEEeecCCeEEEEECCchheeecccCCcc-ceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD-SVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++|++|+.||.|++||+++++++..+..|.. ....+.+.+++..|++++.|  +.|++|++|
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d--G~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN--GFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT--CCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECC--CEEEEEeCC
Confidence            9999999999999999999988888876543 22233444556789999955  599999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-42  Score=287.11  Aligned_cols=283  Identities=19%  Similarity=0.283  Sum_probs=223.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-   97 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-   97 (312)
                      +.++|+|++|+|++++||+|+.|+.|++|+..+++  .+..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+.. 
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35789999999999999999999999999987664  567788999999999999999999999999999999987643 


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE----EEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC----TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC  173 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
                      .....+.+|...|.+++|+|+++.+++++.|+.|++|++.....    ......|...|.+++|+|++++|++|+.|+.+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            23344567889999999999999999999999999998866542    22344678899999999999999999999999


Q ss_pred             EEEeCCCCce------------------eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459          174 KIWDAGEGAC------------------LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN  235 (312)
Q Consensus       174 ~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  235 (312)
                      ++||......                  .... ..+...+..++|+|++++|++++.|+.|++||+.++..+..+..|..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            9999765321                  1111 22345577889999999999999999999999999999988888876


Q ss_pred             ceeEEEEEEEccCCcEEEEeecCCeEEEEECCc--hhee---------------------------------------ec
Q 021459          236 KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ--KTMI---------------------------------------QK  274 (312)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~---------------------------------------~~  274 (312)
                      ....+  .+ .+++++|++|+ |+.+.+|....  ....                                       ..
T Consensus       245 ~v~s~--~f-s~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (371)
T d1k8kc_         245 PLLAV--TF-ITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  320 (371)
T ss_dssp             CEEEE--EE-EETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             cceee--ee-cCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence            64443  33 36777777665 67666654321  1100                                       00


Q ss_pred             ccCCccceEEEEEcCCC----ceEEEeeecCCeeEEEEee
Q 021459          275 LDGHTDSVISVTCHPTE----NKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       275 ~~~h~~~v~~l~~~p~~----~~l~~~~~dgd~~v~iw~~  310 (312)
                      ...|...|.+++++|.+    ..++|+|.|  ++|+||++
T Consensus       321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D--g~v~iW~~  358 (371)
T d1k8kc_         321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMD--GGMSIWDV  358 (371)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETT--SEEEEEEH
T ss_pred             cccccCCEEEEEEeCCCCcceEEEEEEcCC--CeEEEEeC
Confidence            01388899999998754    358888855  69999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-41  Score=276.40  Aligned_cols=251  Identities=25%  Similarity=0.334  Sum_probs=214.3

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEcC--CCeE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSASD--DRTL   88 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v   88 (312)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||.|++|++.+.+.  ...+.+|..+|.+++|+|++++|++++.  ++.+
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence            34456789999999999999999999999999999999988654  3457789999999999999999999876  4569


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      ++|+.++. +....+.+|.+.|.+++|+|+++. +++|+.|+.|++||+++++....+..|..+|.++.|+|++++++++
T Consensus       129 ~v~~~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         129 HVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccc-cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence            99999875 456678899999999999999875 8889999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEE
Q 021459          168 SHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCI  240 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~  240 (312)
                      +.|+.+++||..++.....+...      +...+..++|+|++++|++|+.||.|++||+++++.++.+..+.... ..+
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE
Confidence            99999999999988766554321      34568889999999999999999999999999999988887665432 222


Q ss_pred             EEEEEccCCcEEEEeecCCeEEEEECC
Q 021459          241 TSTFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ...   +++..|++++.||.|++||++
T Consensus       288 ~~~---~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GII---WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEE---ECSSCEEEEETTCCEEEEETT
T ss_pred             EEE---ecCCEEEEEECCCEEEEEeCC
Confidence            222   346689999999999999963

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.3e-41  Score=272.08  Aligned_cols=286  Identities=21%  Similarity=0.249  Sum_probs=221.0

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSDSHYICSASDDRTLRIWD   92 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd   92 (312)
                      ..+++.||.++|++++|+|++++|+||+.||.|++||+.+++.+..+ .+|...|.+++|+|+++++ +++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEec
Confidence            35788999999999999999999999999999999999998887776 4689999999999999755 556799999999


Q ss_pred             CCCCce--eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459           93 ARTPFD--CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        93 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ......  .......+...+.+++++|+++.+++++ ++.+++|+...  .....  ....+.+++|+|+++++++|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccccccc
Confidence            754321  1122334667788999999998776654 56899998543  22222  34467889999999999999999


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE---EEccCCceeEEEEEEEcc
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI---YTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~  247 (312)
                      +.+++||+.+++........+...+..++++|++++|++++.|+.|++||+.++.....   +..|.....+   ....+
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~s~  234 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC---VSWSP  234 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE---EEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccc
Confidence            99999999877654433334556788899999999999999999999999988765433   3345544333   33457


Q ss_pred             CCcEEEEeecCCeEEEEECCchhee--ecccCC-ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          248 NGKYIVSGSEDNCVYVWDLQQKTMI--QKLDGH-TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h-~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++++|++|+.||.|++||+.+....  .....| ...+.++.+ +++++|+++|.|  ++|++|++.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D--~~i~iWdl~  298 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD--SNIKFWNVP  298 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT--SCEEEEECC
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC--CEEEEEecc
Confidence            8999999999999999999875432  223334 456666655 556799999855  699999973

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-40  Score=269.23  Aligned_cols=290  Identities=28%  Similarity=0.468  Sum_probs=226.9

Q ss_pred             ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459           11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI   90 (312)
Q Consensus        11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~   90 (312)
                      +++..+.|++|++.|.+ +++++|++||||+.||+|+|||+.+++++..+.+|...|.+++|+|+  +|++++.|+.+++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~   81 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV   81 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence            45566789999999865 46678999999999999999999999999999999999999999874  9999999999999


Q ss_pred             EeCCCCceeeeeeeccccc--------------------------------------EEEEEEecCCCEEEEeecCCcEE
Q 021459           91 WDARTPFDCLKTLRGHSDF--------------------------------------VFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      |+........ ....+...                                      .......+....+++++.++.|+
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          82 WNAETGECIH-TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EETTTTEEEE-EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccee-cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            9986532111 00000000                                      01112334456788899999999


Q ss_pred             EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459          133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL  212 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
                      +||.+..+....+..|...+..+  .+++.++++++.||.|++||++.++.+..+..+ ...+..+.  +++++|++++.
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~--~~~~~l~s~s~  235 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGME--LKDNILVSGNA  235 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEE--EETTEEEEEET
T ss_pred             EeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEeccc-ccceeEEe--cCCCEEEEEcC
Confidence            99999999888888887666554  457889999999999999999998887766543 44455544  45679999999


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecc-----cCCccceEEEEE
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL-----DGHTDSVISVTC  287 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~  287 (312)
                      |+.|++||....+....+..+......+...  ..+++++++|+.||.|++||+++++.+..+     .+|...|++++|
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CCEEEEEecccccccccccccceeeeceeec--ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            9999999999988887777654433333222  235789999999999999999998887665     357788999999


Q ss_pred             cCCCceEEEeeecC--CeeEEEEeec
Q 021459          288 HPTENKIASAGLDG--DRTVRVWVQD  311 (312)
Q Consensus       288 ~p~~~~l~~~~~dg--d~~v~iw~~~  311 (312)
                      +|++..|++|+.||  +..|++|++|
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99999999999887  3568899886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-38  Score=261.84  Aligned_cols=281  Identities=22%  Similarity=0.403  Sum_probs=207.2

Q ss_pred             eeecccccce-EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           16 KTLTAHSRAV-SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        16 ~~~~~h~~~v-~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      .+|++|.+.| +|++|  ++++|+||+.||+|+|||..+++.+..+.+|..+|.+++|+|+ .+|++|+.|+.|++|+..
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            5789998875 66655  6889999999999999999999999999999999999999985 589999999999999987


Q ss_pred             CCceeeeee-ecccccEEEEEEecC-------------------------------------------------------
Q 021459           95 TPFDCLKTL-RGHSDFVFCVNFNPQ-------------------------------------------------------  118 (312)
Q Consensus        95 ~~~~~~~~~-~~~~~~v~~~~~~~~-------------------------------------------------------  118 (312)
                      ......... ..+........+.++                                                       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            642211110 111112222233333                                                       


Q ss_pred             --------CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC
Q 021459          119 --------SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       119 --------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (312)
                              ++.++++..|+.|++||+++++.+.....+...+.++.++|++.++++++.|+.|++||..++..+..+.. 
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-  241 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-  241 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred             cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc-
Confidence                    44555555555555555555555555566667788899999999999999999999999999888777654 


Q ss_pred             CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh
Q 021459          191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                      +...+..+.++  +++|++++.||.|++||+++.....  ..|......+  .+..+++.++++| .||.|++||+++++
T Consensus       242 h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~g-~d~~i~vwd~~tg~  314 (355)
T d1nexb2         242 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAI--TTFYVSDNILVSG-SENQFNIYNLRSGK  314 (355)
T ss_dssp             CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCC--CEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred             ccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEE--EEEcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            34556666665  5699999999999999998876543  3343333322  2334567777665 58999999999988


Q ss_pred             eee-cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          271 MIQ-KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       271 ~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ++. .+.+|.+.|.+++|+|+ ..+++++.||  +++||.+
T Consensus       315 ~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg--~~~l~~~  352 (355)
T d1nexb2         315 LVHANILKDADQIWSVNFKGK-TLVAAVEKDG--QSFLEIL  352 (355)
T ss_dssp             BCCSCTTTTCSEEEEEEEETT-EEEEEEESSS--CEEEEEE
T ss_pred             EEEEEecCCCCCEEEEEEcCC-eEEEEEECCC--cEEEEEE
Confidence            875 57789999999999987 4677777665  5555544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-37  Score=254.59  Aligned_cols=242  Identities=19%  Similarity=0.344  Sum_probs=210.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR   94 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~   94 (312)
                      ...+|++.|.+++|+|++++|++|+.||.|++|++...  +....+..|...+..++|+|++.++++++.|+.+++|++.
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~  171 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34579999999999999999999999999999998754  4556778899999999999999999999999999999998


Q ss_pred             CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459           95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                      +. +......+|...+.+++|+++++.+++++.|+.|++||+++++.+..+ .|..+|.+++|+|+++++++++.|+.++
T Consensus       172 ~~-~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         172 NQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cc-cccccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccc
Confidence            75 556677789999999999999999999999999999999999877665 4778999999999999999999999999


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (312)
                      +||++++......  .+...+..++|+|++++|++++.|+.|++||..+++.+..+. |.....   .....+++++|++
T Consensus       250 i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~---~~~~s~d~~~l~t  323 (337)
T d1gxra_         250 VLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVL---SCDISVDDKYIVT  323 (337)
T ss_dssp             EEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE---EEEECTTSCEEEE
T ss_pred             ccccccccccccc--ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEE---EEEEeCCCCEEEE
Confidence            9999988765433  345668889999999999999999999999999998887655 444433   3334578999999


Q ss_pred             eecCCeEEEEEC
Q 021459          255 GSEDNCVYVWDL  266 (312)
Q Consensus       255 ~~~dg~i~iwd~  266 (312)
                      |+.||.|++||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-37  Score=255.11  Aligned_cols=285  Identities=15%  Similarity=0.225  Sum_probs=222.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCC-eEEEEeCCCc--ceEEEeeecc-CCEEEEEEcc--CCCeEEEEcCCCeEEEEeCCCCc
Q 021459           24 AVSCVKFSNDGTLLASASLDK-TVIIWSASSL--ALVHRFVGHS-EGISDLAWSS--DSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      .+++++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467899999999999886554 3566665432  3456677774 6799999998  56799999999999999985422


Q ss_pred             e-------eeeeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE-EEEe
Q 021459           98 D-------CLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL-IVSG  167 (312)
Q Consensus        98 ~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~  167 (312)
                      .       .......|.+.|.+++|+++++.+++++.  ++.+.+|+..+++.+..+..|..++.+++|+|++.+ ++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            1       11224467888999999999999887654  678999999999999999999999999999998875 6789


Q ss_pred             eCCCeEEEEeCCCCceeeEccc--CCCCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459          168 SHDGTCKIWDAGEGACLKTLID--DKDPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      +.|+.+++||....+.......  .+...+..++|+|+ +.+|++++.|+.|++||.++++.+..+.+|......+....
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~  258 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL  258 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeee
Confidence            9999999999988766555433  33455888899996 68899999999999999999999988887766544333333


Q ss_pred             EccCCcEEEEeecCCeEEEEECCchheeecccCCc--cceEEEEEcCC-CceEEEeeecCCeeEEEEee
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT--DSVISVTCHPT-ENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~p~-~~~l~~~~~dgd~~v~iw~~  310 (312)
                      ..+++++|++++.||.|+|||+++++.+..+..|.  ..+..+++.+. +.+|+++|.|  ++|++|++
T Consensus       259 ~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--g~i~vwdl  325 (325)
T d1pgua1         259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD--GTLNFYEL  325 (325)
T ss_dssp             EESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT--SCEEEEET
T ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC--CEEEEEEC
Confidence            34678999999999999999999988887765544  34445555433 3478888855  69999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=242.49  Aligned_cols=277  Identities=27%  Similarity=0.495  Sum_probs=218.4

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ++.+.....|...|+|++  +++++||||+.||+|+|||+.+++++..+.+|...|.+++|  ++++|++|+.|+.+++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            455566778999999976  57999999999999999999999999999999999999887  67899999999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ++...... .....+...  ...+.+....++++..++.+.+||......   ...+..|...+..+.+.+  ..+++++
T Consensus        81 ~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          81 DVNTGEML-NTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             ESSSCCEE-EEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred             cccccccc-ccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence            99875432 222222222  234456677899999999999999976543   334556777787777654  5788999


Q ss_pred             CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459          169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN  248 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
                      .|+.+++||.++++.+..+... ...+..+  ++++.++++++.|+.|++||+++...+..+..+......     ...+
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-----~~~~  227 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGH-KRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC-----IRFD  227 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECC-SSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-----EECC
T ss_pred             CCCceeeecCCCCcEEEEEccc-ccccccc--cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee-----cccc
Confidence            9999999999998887776543 3344444  445679999999999999999999988888776654322     2356


Q ss_pred             CcEEEEeecCCeEEEEECCch---------heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459          249 GKYIVSGSEDNCVYVWDLQQK---------TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       249 ~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      +.+|++|+.||.|++||+...         ..+..+.+|.+.|++++|+  +++|+++|.|  ++|+|||
T Consensus       228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~D--g~i~iWD  293 (293)
T d1p22a2         228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD--DTILIWD  293 (293)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSS--SEEEEEC
T ss_pred             ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecC--CEEEEeC
Confidence            789999999999999997432         3456778999999999995  5689999955  6999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-36  Score=253.70  Aligned_cols=241  Identities=19%  Similarity=0.218  Sum_probs=195.8

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT  142 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  142 (312)
                      .++|++++|+|++++|++|+.|+.|++||..+.. ..+..+++|.+.|.+++|+|++++|++++.|++|++||+.+++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999987543 356778899999999999999999999999999999999877654


Q ss_pred             E--EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee---eEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459          143 R--VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL---KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK  217 (312)
Q Consensus       143 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
                      .  .+..|...|.+++|+|+++.|++++.|+.+++|+.......   ......+...+..+.|+|++++|++++.|+.|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            3  44567889999999999999999999999999987654432   233334556788899999999999999999999


Q ss_pred             EEEcCCCc------------------EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc
Q 021459          218 LWNYSAGK------------------FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT  279 (312)
Q Consensus       218 v~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  279 (312)
                      +||.....                  .+.....|......   ....+++++|++++.||.|.+||+.+...+..+..|.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG---VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE---EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEE---EEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            99975432                  22333334443322   3344788999999999999999999999999999999


Q ss_pred             cceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          280 DSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       280 ~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                      .+|.+++|+|+++.|++| .|+  .+++|..
T Consensus       244 ~~v~s~~fs~d~~~la~g-~d~--~~~~~~~  271 (371)
T d1k8kc_         244 LPLLAVTFITESSLVAAG-HDC--FPVLFTY  271 (371)
T ss_dssp             CCEEEEEEEETTEEEEEE-TTS--SCEEEEE
T ss_pred             ccceeeeecCCCCEEEEE-cCC--ceEEEEe
Confidence            999999999999777654 354  4555544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-36  Score=251.88  Aligned_cols=249  Identities=27%  Similarity=0.444  Sum_probs=203.4

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ...|...|++++|+|++++|++|+.||.|++|+...++.+....+|...|.+++|++++..+++++.++.+++||..+. 
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  195 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-  195 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc-
Confidence            3468889999999999999999999999999999999999999999999999999999999999999999999999875 


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-------eecCcCeEEEEEccCCCEEEEeeCC
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-------RAHSMPVTSVHFNRDGSLIVSGSHD  170 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
                      ........+...+....+.+++++|++++.|+.|++||.+++.....+       ..|..+|.+++|+|++++|++++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            334444444444444444457899999999999999999988766544       3477889999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEc-----------ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          171 GTCKIWDAGEGACLKTL-----------IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      +.|++||++++......           ...+...+..++|+|++++|++|+.||.|++||+++++.+..+.+|.....+
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~  355 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS  355 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence            99999998765432211           1223456788899999999999999999999999999999999999887665


Q ss_pred             EEEEE---EccCCcEEEEeecCCeEEEEECC
Q 021459          240 ITSTF---SVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       240 ~~~~~---~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      +....   ..+++.+|++|+.||.|++|+++
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            54321   23578899999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-36  Score=243.14  Aligned_cols=252  Identities=29%  Similarity=0.494  Sum_probs=220.1

Q ss_pred             eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459           56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE  135 (312)
Q Consensus        56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd  135 (312)
                      ....+.+|.++|++++|+|++++|++|+.||.|++||+.+. +.+..+.+|.+.|.+++|+|++..++++..++.+..|+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            34578999999999999999999999999999999999875 56778889999999999999999999999999999999


Q ss_pred             cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459          136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST  215 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
                      ....+....+..|...+.++.++|+++.+++++.|+.+++||+++++....+.. +...+..+.++|++.+|++++.|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecccCCCEEEEEeCCCe
Confidence            998888888888999999999999999999999999999999999887776644 4556788889999999999999999


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEE-----------------EEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITST-----------------FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH  278 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  278 (312)
                      |++|+..+++....+..+.....++...                 .....+.++++++.||.|++||+++++.+..+.+|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            9999999998888777766554433221                 11123568999999999999999999999999999


Q ss_pred             ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          279 TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       279 ~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ...|.+++++|++++|++++.|  ++|++|++.
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~  277 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADD--KTLRVWDYK  277 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETT--TEEEEECCT
T ss_pred             CCCEEEEEECCCCCEEEEEECC--CeEEEEECC
Confidence            9999999999999999999955  589999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-36  Score=245.81  Aligned_cols=274  Identities=20%  Similarity=0.294  Sum_probs=214.6

Q ss_pred             eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      .+.+++|.+|.++|++++|+|    |+||+.||.|++|+..++     ..+|...|.++++++++ .+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            456789999999999999988    999999999999998764     35799999999998765 57889999999999


Q ss_pred             eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459           92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                      ++...        .....+.++.+++++..++++ .++.+.+|+..+++....+..+ .++  .++++++..+++++.++
T Consensus        73 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          73 GITKH--------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             TEEEE--------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTT
T ss_pred             ccccc--------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeecccc
Confidence            86431        122346678888887666665 5567889999988877766543 233  45667788888887775


Q ss_pred             -eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EEccCCceeEEEEE------
Q 021459          172 -TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YTGHTNKKYCITST------  243 (312)
Q Consensus       172 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~------  243 (312)
                       .+++|++.+..............+..++|+|++.+|++++.||.|++||..+++.... +..|.....++...      
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence             6999999876666555555566788999999999999999999999999988876543 45566655444321      


Q ss_pred             -EEccCCcEEEEeecCCeEEEEECCc-hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459          244 -FSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       244 -~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~  310 (312)
                       ....++.+|++|+.||.|++||+++ .+.+..+.+|...|++++|+|++ .|+++|.|  ++|++|++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D--~~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD--ACIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT--SCEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC--CeEEEEEE
Confidence             1124577999999999999999976 45667788999999999999986 68888855  69999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=244.55  Aligned_cols=251  Identities=20%  Similarity=0.293  Sum_probs=197.8

Q ss_pred             ceeeeccc-ccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCcce--------EEEeeeccCCEEEEEEccCCCeEEEE
Q 021459           14 HFKTLTAH-SRAVSCVKFSN--DGTLLASASLDKTVIIWSASSLAL--------VHRFVGHSEGISDLAWSSDSHYICSA   82 (312)
Q Consensus        14 ~~~~~~~h-~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~   82 (312)
                      ....+.+| ...|++++|+|  ++.+|++|+.||+|++|+....+.        ...+..|..+|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            34556676 56899999998  567999999999999999865432        22345688899999999999998877


Q ss_pred             cC--CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEe---eecCcCeEEEE
Q 021459           83 SD--DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVI---RAHSMPVTSVH  156 (312)
Q Consensus        83 ~~--d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~  156 (312)
                      +.  ++.+++|+.+++ +.+..+.+|...|.+++|+|+++. +++++.|+.|++||....+.....   ..|...|.+++
T Consensus       134 ~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         134 GEGRDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             ECCSSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccccceEEEEeeccc-ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            54  667999998775 567778899999999999998865 778999999999999887765544   34667899999


Q ss_pred             EccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCc---EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          157 FNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPA---VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       157 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      |+|+ +.++++++.|+.|++||+++++.+..+..+....   +....+ |++++|++++.|+.|++||+++++.++.+..
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence            9996 6889999999999999999998887775433221   222222 6889999999999999999999999888876


Q ss_pred             cCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      +..........+....+.+|++++.||.|++||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            6554322222222233558999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=242.71  Aligned_cols=293  Identities=12%  Similarity=0.090  Sum_probs=210.4

Q ss_pred             ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEE
Q 021459           14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRFVGHSEGISDLAWSSD-SHYICSASDDRTLR   89 (312)
Q Consensus        14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~   89 (312)
                      ..+.+++|++.|++|+|+|++++||+|+.||+|+|||+.....   +....+|..+|.+++|+|+ +.+|++|+.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4556788999999999999999999999999999999875443   2333479999999999986 45899999999999


Q ss_pred             EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE----Eeeec--CcCeEEEEEccCCCE
Q 021459           90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR----VIRAH--SMPVTSVHFNRDGSL  163 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~--~~~v~~~~~~~~~~~  163 (312)
                      +|++............+........+.++...+++++.++.+++||++.+....    ....+  ......+.+.+++..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            999977544333333344444556667788899999999999999986543222    22222  223456677788899


Q ss_pred             EEEeeCCCeEEEEeCCCCceeeEc---ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE------EEEE---
Q 021459          164 IVSGSHDGTCKIWDAGEGACLKTL---IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL------KIYT---  231 (312)
Q Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~---  231 (312)
                      +++++.|+.+++||++........   ............++.++..+++++.||.+.+|++......      ..+.   
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            999999999999999865533221   1112222333445667789999999999999997543211      1111   


Q ss_pred             ---ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459          232 ---GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW  308 (312)
Q Consensus       232 ---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw  308 (312)
                         .+......+......|++++|++|+.||.|++||+.+++.+..+..+. .+..++|+|+++.|++++.|+  ++++|
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd--~~~~~  319 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDD--TFKTN  319 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECT--HHHHC
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCC--cEEEe
Confidence               112222334444556789999999999999999999998888776432 345678888999999988653  45544


Q ss_pred             e
Q 021459          309 V  309 (312)
Q Consensus       309 ~  309 (312)
                      .
T Consensus       320 ~  320 (342)
T d1yfqa_         320 A  320 (342)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-33  Score=228.79  Aligned_cols=245  Identities=19%  Similarity=0.295  Sum_probs=192.4

Q ss_pred             cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459           54 LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIR  132 (312)
Q Consensus        54 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  132 (312)
                      |+....+.||..+|++++|+|++++|++|+.||.|++||+.++.. +..+ .+|...|.+++|+|++++ ++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCCcEEEEEeecccee-ecccceeeEE
Confidence            456677899999999999999999999999999999999988643 4444 578999999999999864 5667899999


Q ss_pred             EEEcCCCeE---EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE
Q 021459          133 IWEVKTGKC---TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       133 ~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      +|+......   ......+...+.+++++|+++.+++++ ++.+.+|+....  ....   .......++++|++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~---~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVP---ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEE---CSSCEEEEEECTTSCEEEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-cccccccccccc--cccc---ccccccccccccccccccc
Confidence            999865432   122334667789999999998776654 568999985432  2221   2334677889999999999


Q ss_pred             EecCCeEEEEEcCCCcEEEE-EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee---ecccCCccceEEE
Q 021459          210 GTLDSTLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI---QKLDGHTDSVISV  285 (312)
Q Consensus       210 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l  285 (312)
                      ++.|+.|++||+++++.... ...|.....+   ....+++.+|++++.||.|++||+.+....   ..+.+|...|.++
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITS---VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEE---EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999988775443 3345554333   334578899999999999999999776543   4567799999999


Q ss_pred             EEcCCCceEEEeeecCCeeEEEEeec
Q 021459          286 TCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       286 ~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|+|++++|++++.|  ++|++|++.
T Consensus       231 ~~s~~~~~l~sgs~d--g~i~iwd~~  254 (299)
T d1nr0a2         231 SWSPDNVRLATGSLD--NSVIVWNMN  254 (299)
T ss_dssp             EECTTSSEEEEEETT--SCEEEEETT
T ss_pred             cccccccceEEEcCC--CEEEEEECC
Confidence            999999999999955  589999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-33  Score=233.72  Aligned_cols=261  Identities=18%  Similarity=0.253  Sum_probs=190.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEE------cc-CCCeEEEEc
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAW------SS-DSHYICSAS   83 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~------~~-~~~~l~~~~   83 (312)
                      ...+|.+.|.++++++  ++++|++.|+.|++|+.....      .......|...+..+..      .. ++.++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4578999999999875  689999999999999975432      22333345544433322      11 235788999


Q ss_pred             CCCeEEEEeCCCCcee--ee--e-----eecccccEEEEEEecC-----CCEEEEeecCCcEEEEEcCCCe---------
Q 021459           84 DDRTLRIWDARTPFDC--LK--T-----LRGHSDFVFCVNFNPQ-----SNLIVSGSFDESIRIWEVKTGK---------  140 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~--~~--~-----~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~~wd~~~~~---------  140 (312)
                      .||.+++|++......  ..  .     ...+...+..+++.++     ++++++++.||.+++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999986432111  10  0     1123455677777765     3578999999999999985321         


Q ss_pred             ---E------EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-----cCCCCcEEEEEECCCCCE
Q 021459          141 ---C------TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-----DDKDPAVSFAKFSPNGKF  206 (312)
Q Consensus       141 ---~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  206 (312)
                         .      ......+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+.     ..+...+..++|+|+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence               0      01112234558899999997 88999999999999999887765443     234567889999999999


Q ss_pred             EEEEecCC---eEEEEEcCCCcEEEEEE-------------ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh
Q 021459          207 ILVGTLDS---TLKLWNYSAGKFLKIYT-------------GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT  270 (312)
Q Consensus       207 l~~~~~d~---~i~v~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  270 (312)
                      |++|+.|+   .|++||+++++.+..+.             +|.....   ...+.+++++|++|+.||+|++||+.+++
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~---~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM---SLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE---EEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee---eeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999887   49999999998877664             4555433   33445789999999999999999999999


Q ss_pred             eeecccCCccceE
Q 021459          271 MIQKLDGHTDSVI  283 (312)
Q Consensus       271 ~~~~~~~h~~~v~  283 (312)
                      ++..+.+|.+.|.
T Consensus       323 ~~~~l~gH~~~v~  335 (393)
T d1sq9a_         323 RITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEECCGGGCS
T ss_pred             EEEEECCcCCccc
Confidence            9999998876543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-31  Score=217.26  Aligned_cols=248  Identities=24%  Similarity=0.484  Sum_probs=207.8

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTL   88 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v   88 (312)
                      +...++..|..+|.+++|+|+++++++|+.|+.+++|+....    .....+.+|........... +..+.....+...
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  166 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTC  166 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEE
T ss_pred             eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccc
Confidence            445677889999999999999999999999999999987653    34455666776665555444 4566677788888


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ..+..... ........+...+....+.+....+++++.|+.|++||+++++.+..+..|..+|++++|+|++++|++|+
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         167 ALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EEEETTTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccc-cccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe
Confidence            88887664 33444555677888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459          169 HDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT  247 (312)
Q Consensus       169 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
                      .|+.|++||++.......+. ......+..+.|+|++++|++|+.||.|++||+.+++.+..+.+|.....++   ...+
T Consensus       246 ~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l---~~s~  322 (340)
T d1tbga_         246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL---GVTD  322 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EECT
T ss_pred             CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE---EEeC
Confidence            99999999999877665442 2344568889999999999999999999999999999999999988775544   3457


Q ss_pred             CCcEEEEeecCCeEEEEE
Q 021459          248 NGKYIVSGSEDNCVYVWD  265 (312)
Q Consensus       248 ~~~~l~~~~~dg~i~iwd  265 (312)
                      ++.+|++|+.||.|++||
T Consensus       323 d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEccCCEEEEeC
Confidence            899999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=8.7e-33  Score=229.59  Aligned_cols=272  Identities=14%  Similarity=0.141  Sum_probs=206.8

Q ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--eEEEEeCCCCceeeeeee
Q 021459           28 VKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--TLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        28 ~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~wd~~~~~~~~~~~~  104 (312)
                      -.||| ||+++|+++. |.|++|+...+..+. + +|...|.+++|+|||++|++++.+.  .|++||.+++.  ...+.
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEECC
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEee
Confidence            47999 9999999875 799999998877654 3 6999999999999999988776553  79999998753  45667


Q ss_pred             cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee----------CCCeEE
Q 021459          105 GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS----------HDGTCK  174 (312)
Q Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~  174 (312)
                      .|...+.+++|+|+++++++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            8999999999999999999999999999999999998888888888999999999999998543          345689


Q ss_pred             EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE-------EEEEEccCCc-----------
Q 021459          175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-------LKIYTGHTNK-----------  236 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~-----------  236 (312)
                      +||..+++.....  ..........|+|+|+.|++++.++.+++||......       ......+...           
T Consensus       163 v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         163 VYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             EEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             eeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence            9999887654332  2344566778999999999999999999998644321       1111111000           


Q ss_pred             ---------------eeE-------EEEEEEccC-------------CcEEEEeecCCeEEEEECCchheeecccCCccc
Q 021459          237 ---------------KYC-------ITSTFSVTN-------------GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDS  281 (312)
Q Consensus       237 ---------------~~~-------~~~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~  281 (312)
                                     ...       .......++             ..++++++.++.|++||+.+++.    ..|.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~  316 (360)
T d1k32a3         241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNN  316 (360)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEE
T ss_pred             cccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCC
Confidence                           000       000000111             12345567789999999987543    345667


Q ss_pred             eEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459          282 VISVTCHPTENKIASAGLDGDRTVRVWVQDR  312 (312)
Q Consensus       282 v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~  312 (312)
                      |.+++|+|||++|++++.|  ++|++|++++
T Consensus       317 v~~~~~SpDG~~l~~~~~D--g~i~v~d~~~  345 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDD--GKIYTFPLEK  345 (360)
T ss_dssp             EEEEEECTTSCEEEEEETT--SCEEEEESSC
T ss_pred             cCEEEECCCCCEEEEEECC--CeEEEEECCC
Confidence            9999999999999999955  5899999753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-30  Score=215.85  Aligned_cols=244  Identities=27%  Similarity=0.531  Sum_probs=190.8

Q ss_pred             EEEeeeccCCE-EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459           57 VHRFVGHSEGI-SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE  135 (312)
Q Consensus        57 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd  135 (312)
                      ...+++|...| ++++  +++++|++|+.||.|++||+.+. +.+..+.+|.+.|.+++|+|+ +.|++++.|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTT-EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            45688998886 5554  56889999999999999999875 678889999999999999985 6899999999999999


Q ss_pred             cCCCeEEEEeeecC--cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC-----------CC---------
Q 021459          136 VKTGKCTRVIRAHS--MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK-----------DP---------  193 (312)
Q Consensus       136 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~---------  193 (312)
                      ....+.........  .......+.+++.++++++.|+.|++||+++...........           ..         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            99988766554333  334566778899999999999999999998755432211100           00         


Q ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459          194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ  273 (312)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (312)
                      ........+++++++++..|+.|++||.++++.+.....+......   ....+++..+++++.||.|++||+.++..+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS---TIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE---EEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeecccccccc---ccccccceeeecccccceEEeeecccccccc
Confidence            0112345667899999999999999999999888877766554333   3334678899999999999999999999999


Q ss_pred             cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          274 KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       274 ~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+.+|...|.++++++  ++|++++.|  ++|++|+..
T Consensus       238 ~~~~h~~~v~~~~~~~--~~l~~~~~d--g~i~iwd~~  271 (355)
T d1nexb2         238 TLQGHTALVGLLRLSD--KFLVSAAAD--GSIRGWDAN  271 (355)
T ss_dssp             EECCCSSCCCEEEECS--SEEEEECTT--SEEEEEETT
T ss_pred             cccccccccccccccc--ceeeeeecc--ccccccccc
Confidence            9999999999999865  689999855  599999863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-30  Score=211.76  Aligned_cols=247  Identities=29%  Similarity=0.584  Sum_probs=185.9

Q ss_pred             EeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC
Q 021459           49 WSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD  128 (312)
Q Consensus        49 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
                      |+..+.+....+++|.+.|.+ +++++|++|++|+.||.|++||+.+. +++..+.+|.+.|.+++|+|+  ++++++.|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            444555666778999999865 46778999999999999999999875 567889999999999999874  99999999


Q ss_pred             CcEEEEEcCCCeEEEEeeecCcCeE--------------------------------------EEEEccCCCEEEEeeCC
Q 021459          129 ESIRIWEVKTGKCTRVIRAHSMPVT--------------------------------------SVHFNRDGSLIVSGSHD  170 (312)
Q Consensus       129 g~i~~wd~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~~~~~l~~~~~d  170 (312)
                      +.+++|+............+...+.                                      .....+....+++++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            9999999876654333222211111                                      11223344567788888


Q ss_pred             CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      +.+++||.........+..+. ...  ..+++++.++++++.||.|++||++.++.+..+..|.....++.     .+++
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-----~~~~  228 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHT-NRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-----LKDN  228 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCS-SCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-----EETT
T ss_pred             CeEEEeecccceeeEEEcCcc-ccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe-----cCCC
Confidence            888888887777666554332 223  33566788999999999999999999999988888876544332     2467


Q ss_pred             EEEEeecCCeEEEEECCchheeecccC---CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          251 YIVSGSEDNCVYVWDLQQKTMIQKLDG---HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      +|++|+.||.|++||+...+....+..   |...+.++.++  ++++++++.|  ++|++|++.
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~D--g~i~iwd~~  288 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD--GTVKLWDLK  288 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT--SEEEEEETT
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCC--CEEEEEECC
Confidence            999999999999999988776665544   56677777765  4689999854  699999863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.4e-30  Score=212.17  Aligned_cols=255  Identities=14%  Similarity=0.075  Sum_probs=185.7

Q ss_pred             ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce--eeeeeecccccEEEEEEecCC-CEEEEeecCCcE
Q 021459           55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD--CLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESI  131 (312)
Q Consensus        55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i  131 (312)
                      +.+...++|.+.|++|+|+|++++|++|+.||+|++||++....  .+....+|.+.|.+++|+|++ .++++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45566678999999999999999999999999999999865432  233344699999999999865 579999999999


Q ss_pred             EEEEcCCCeEEEEeeecCc-CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc----c-CCCCcEEEEEECCCCC
Q 021459          132 RIWEVKTGKCTRVIRAHSM-PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI----D-DKDPAVSFAKFSPNGK  205 (312)
Q Consensus       132 ~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~  205 (312)
                      ++|++..+........+.. ......+.+++..+++++.++.+++||++.........    . ..........+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999988776655544433 34455566788899999999999999986543222111    1 1112233345677888


Q ss_pred             EEEEEecCCeEEEEEcCCCcEEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee------------
Q 021459          206 FILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI------------  272 (312)
Q Consensus       206 ~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------  272 (312)
                      .+++++.|+.|++||+........... .............+.++..+++++.||.+.+|+.......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            999999999999999977653222111 1111112233344566789999999999999987543211            


Q ss_pred             ---ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          273 ---QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       273 ---~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                         ....+|...|++|+|+|++++|++||.|  ++|++|+.+
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D--g~v~vWD~~  281 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD--GIISCWNLQ  281 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETT--SCEEEEETT
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCC--CEEEEEECC
Confidence               1224567789999999999999999955  599999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-27  Score=192.21  Aligned_cols=235  Identities=29%  Similarity=0.593  Sum_probs=183.7

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK  137 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~  137 (312)
                      .....|...|++++  +++++|++|+.||.|++||+.+. +++..+++|.+.|.+++|  ++++|++++.|+.|++|++.
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            33455778888765  47999999999999999999875 678889999999999876  56899999999999999999


Q ss_pred             CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE--cccCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459          138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT--LIDDKDPAVSFAKFSPNGKFILVGTLDST  215 (312)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
                      .+........+...  ...+.+....++++..++.+.+||.........  ....+...+....+  ....+++++.|+.
T Consensus        84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~  159 (293)
T d1p22a2          84 TGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  159 (293)
T ss_dssp             SCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             cccccccccccccc--cccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCc
Confidence            98876665544433  334455667899999999999999887553222  22233444544444  4567888999999


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA  295 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~  295 (312)
                      |++||.++++.+..+.++......+.     .++..+++++.||.|++||+++...+....+|...+..  +.+++.+|+
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEE-----EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred             eeeecCCCCcEEEEEccccccccccc-----CCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEE
Confidence            99999999999888887766533321     24678999999999999999999888888888888775  456778999


Q ss_pred             EeeecCCeeEEEEee
Q 021459          296 SAGLDGDRTVRVWVQ  310 (312)
Q Consensus       296 ~~~~dgd~~v~iw~~  310 (312)
                      +++.|  ++|++|++
T Consensus       233 sg~~d--g~i~iwd~  245 (293)
T d1p22a2         233 SGAYD--GKIKVWDL  245 (293)
T ss_dssp             EEETT--SCEEEEEH
T ss_pred             EEcCC--CEEEEEEC
Confidence            99955  58999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-28  Score=205.09  Aligned_cols=246  Identities=18%  Similarity=0.254  Sum_probs=172.4

Q ss_pred             EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-----eeeeeeecccccEEEEEE---ec----CCCEEEEe
Q 021459           58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-----DCLKTLRGHSDFVFCVNF---NP----QSNLIVSG  125 (312)
Q Consensus        58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-----~~~~~~~~~~~~v~~~~~---~~----~~~~l~s~  125 (312)
                      ...++|...|.++++++  +++++++.|+.|++||..+..     ........|...+..+..   .+    +...++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34578999999999864  689999999999999975421     111122223332222221   11    23467899


Q ss_pred             ecCCcEEEEEcCCCeEEEEe----------eecCcCeEEEEEccC-----CCEEEEeeCCCeEEEEeCCCCce-------
Q 021459          126 SFDESIRIWEVKTGKCTRVI----------RAHSMPVTSVHFNRD-----GSLIVSGSHDGTCKIWDAGEGAC-------  183 (312)
Q Consensus       126 ~~dg~i~~wd~~~~~~~~~~----------~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~-------  183 (312)
                      +.||.|++|++.........          ..+...+..++|.++     +.++++++.||.+++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999997643221111          123345677778765     46789999999999999743210       


Q ss_pred             -------ee-E--cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE------ccCCceeEEEEEEEcc
Q 021459          184 -------LK-T--LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT------GHTNKKYCITSTFSVT  247 (312)
Q Consensus       184 -------~~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~  247 (312)
                             .. .  ........+..++++|++ +|++|+.|+.|++||+++++.+..+.      +|.....+   ....|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~---l~~sp  241 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS---VKFSP  241 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE---EEECS
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEE---ccccc
Confidence                   00 0  011122335567899997 88999999999999999998776554      34444333   34457


Q ss_pred             CCcEEEEeecCC---eEEEEECCchheeecc-------------cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          248 NGKYIVSGSEDN---CVYVWDLQQKTMIQKL-------------DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       248 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++++|++|+.|+   .|++||+++++.+..+             .+|.+.|++|+|+|++++|+++|.|  ++||+|+++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D--~~v~vWd~~  319 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--GKLRFWDVK  319 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT--SEEEEEETT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC--CEEEEEECC
Confidence            899999999987   5999999887666554             4799999999999999999999955  699999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.8e-26  Score=182.25  Aligned_cols=232  Identities=15%  Similarity=0.226  Sum_probs=176.5

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      ..+|...|.++++++++ .+++++.|+++++|+....       .....+..+++++++..++++. ++.+.+|+..+. 
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-  111 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG-  111 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC-
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEee-cccceeeeccce-
Confidence            46799999999998765 5789999999999986532       1344577888999888777764 556788887764 


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEeecCC-cEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-SIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSHDGTCKI  175 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  175 (312)
                      +.+..+..+ ..+  .+++++++.+++++.++ .|++|++...+....+. .|..++++++|+|++.+|++|+.||.|++
T Consensus       112 ~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  188 (287)
T d1pgua2         112 DIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL  188 (287)
T ss_dssp             CEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccc
Confidence            334444433 233  45677788888877765 79999998766555443 46778999999999999999999999999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCC----------CCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEE
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPN----------GKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTF  244 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~  244 (312)
                      ||+.+++........+...+..++|+|.          +.++++|+.|+.|++||++. .+.+..+.+|......+.  +
T Consensus       189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~--~  266 (287)
T d1pgua2         189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL--W  266 (287)
T ss_dssp             EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE--E
T ss_pred             eeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE--E
Confidence            9999887766555556667888888764          56899999999999999876 455666677877655442  3


Q ss_pred             EccCCcEEEEeecCCeEEEEEC
Q 021459          245 SVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       245 ~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      . +++ .|++++.||.|++|++
T Consensus       267 ~-~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         267 E-TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             E-ETT-EEEEEETTSCEEEEEE
T ss_pred             C-CCC-EEEEEECCCeEEEEEE
Confidence            3 444 6889999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4e-26  Score=194.09  Aligned_cols=273  Identities=8%  Similarity=0.072  Sum_probs=188.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee----eeeeecccccE
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC----LKTLRGHSDFV  110 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~----~~~~~~~~~~v  110 (312)
                      -++++++.||.|++||..+++.+..+..| ..+..++|+|||++|++++.|+.+++||+.+....    +....+|.+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            35688889999999999999999999876 46999999999999999999999999999875421    12233566777


Q ss_pred             EEEEEecCCCEEEE-eecCCcEEEEEcCCCeEEEEeeecCcCe-----------EEEEEccCCCEEEEeeC-CCeEEEEe
Q 021459          111 FCVNFNPQSNLIVS-GSFDESIRIWEVKTGKCTRVIRAHSMPV-----------TSVHFNRDGSLIVSGSH-DGTCKIWD  177 (312)
Q Consensus       111 ~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~-d~~i~iwd  177 (312)
                      .+++|+|||+++++ +..++.+.+||..+++....+..+...+           ..+..++++..++.... .+.+.+++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            88889999998754 4578999999999998877766554333           34455555555444332 34455555


Q ss_pred             CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEE-------------------------
Q 021459          178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYT-------------------------  231 (312)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~-------------------------  231 (312)
                      ....................+.++|++++++++. .+..+.+++..+++.+....                         
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (426)
T d1hzua2         192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS  271 (426)
T ss_dssp             CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred             eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence            4443322211112344566778999999877765 44567778777665543321                         


Q ss_pred             -----------------------------ccCCceeEEEEEEEccCCcEEEE-------eecCCeEEEEECCchheeecc
Q 021459          232 -----------------------------GHTNKKYCITSTFSVTNGKYIVS-------GSEDNCVYVWDLQQKTMIQKL  275 (312)
Q Consensus       232 -----------------------------~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~  275 (312)
                                                   +|...   +......|++++|++       ++.+++|++||+.+++...++
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~---v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC---CCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCc---eeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence                                         11111   111234577888884       567899999999887665443


Q ss_pred             ---------cCCccceEEEEEcCCCceEEEe---eecCCeeEEEEeec
Q 021459          276 ---------DGHTDSVISVTCHPTENKIASA---GLDGDRTVRVWVQD  311 (312)
Q Consensus       276 ---------~~h~~~v~~l~~~p~~~~l~~~---~~dgd~~v~iw~~~  311 (312)
                               ..|...|..++|+|||++++.+   +.+.+++|+|||..
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence                     3456679999999999877443   23457889999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-25  Score=184.29  Aligned_cols=253  Identities=10%  Similarity=0.053  Sum_probs=187.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      +|...|.+++|+|||++|++++.+.  .|++|+..+++. ..+..|...|.+++|+|++++|++++.++.+++|++.+. 
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-  117 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-  117 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceecccccccccccccc-
Confidence            6999999999999999998776553  789999988765 467789999999999999999999999999999999875 


Q ss_pred             eeeeeeecccccEEEEEEecCCCEEEEee----------cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459           98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGS----------FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG  167 (312)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
                      +....+..|...+.+++|+|++++|+.+.          .++.+++||+.+++.... ..+...+..+.|+|+|+.|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEE
Confidence            44566777888899999999999988654          344689999998876543 3456678889999999999999


Q ss_pred             eCCCeEEEEeCCCCcee-------eEccc-----------------------------------CCCCcEEEEEECCCCC
Q 021459          168 SHDGTCKIWDAGEGACL-------KTLID-----------------------------------DKDPAVSFAKFSPNGK  205 (312)
Q Consensus       168 ~~d~~i~iwd~~~~~~~-------~~~~~-----------------------------------~~~~~~~~~~~~~~~~  205 (312)
                      +.++.+.+||.......       ..+..                                   ........+...+++.
T Consensus       197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1k32a3         197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI  276 (360)
T ss_dssp             ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred             eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence            99999999986432210       00000                                   0001111222222222


Q ss_pred             -------------EEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459          206 -------------FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI  272 (312)
Q Consensus       206 -------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  272 (312)
                                   +++.++.++.|++||+.+++... +.+   .   +......+||++|++++.||.|++||+..++..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~---~---v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VKN---N---LTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EEE---E---EEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-ecC---C---cCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence                         23445567889999998876532 221   1   333345689999999999999999999988877


Q ss_pred             ecccCCccce
Q 021459          273 QKLDGHTDSV  282 (312)
Q Consensus       273 ~~~~~h~~~v  282 (312)
                      ..+..+..++
T Consensus       350 ~~~~~d~~~~  359 (360)
T d1k32a3         350 RTVETDKRPL  359 (360)
T ss_dssp             EECCCCSSCE
T ss_pred             eEEEeccccc
Confidence            7766555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=7.6e-26  Score=192.40  Aligned_cols=196  Identities=10%  Similarity=0.049  Sum_probs=150.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-e---eeeeecccc
Q 021459           33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-C---LKTLRGHSD  108 (312)
Q Consensus        33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~---~~~~~~~~~  108 (312)
                      +.-++++.+.+|.|.|||..+++.+..+..+ ..+..++|+|||+++++++.|+.+++||+.+... .   +....+|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3334688999999999999999999999877 4699999999999999999999999999876532 1   222335667


Q ss_pred             cEEEEEEecCCCEE-EEeecCCcEEEEEcCCCeEEEEeeec-----------CcCeEEEEEccCCCEE-EEeeCCCeEEE
Q 021459          109 FVFCVNFNPQSNLI-VSGSFDESIRIWEVKTGKCTRVIRAH-----------SMPVTSVHFNRDGSLI-VSGSHDGTCKI  175 (312)
Q Consensus       109 ~v~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~d~~i~i  175 (312)
                      .+.+..|+|||+++ ++++.++.|++||..+++.+..+..+           ......+.++|++..+ ++...++.+.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            77778889999976 67888999999999999887766543           2335578889998865 45667899999


Q ss_pred             EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCcEEEE
Q 021459          176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~  229 (312)
                      ||..+.+......-........+.++|+|+++++++. ++.+.++|..+++.+..
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            9988766443222233455677889999998877754 56788888877665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.2e-23  Score=167.15  Aligned_cols=261  Identities=11%  Similarity=0.118  Sum_probs=195.1

Q ss_pred             EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe
Q 021459           38 ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN  116 (312)
Q Consensus        38 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~  116 (312)
                      ++++.|++|.+||..+++.+..+... ..+..++|+|||++|+ +++.++.|++||+.+. +.+..+..+. ....+.++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-ceeeeeeccc-cccccccc
Confidence            46678899999999999988887643 5678999999999874 6678899999999885 5566666554 45789999


Q ss_pred             cCCCEEEE-eecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCCeEEEEeCCCCceeeEcccCCCCc
Q 021459          117 PQSNLIVS-GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACLKTLIDDKDPA  194 (312)
Q Consensus       117 ~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (312)
                      ++++.++. +..++.+.+|+..+++....+..+ ....++.++|+++.++ ++..++.+.+|+..+......+..  ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  159 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRS  159 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSS
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc--CCC
Confidence            99986554 556678999999999887777654 4567899999998775 555678899999998887766543  234


Q ss_pred             EEEEEECCCCCEEEEEecC-CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCchh
Q 021459          195 VSFAKFSPNGKFILVGTLD-STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQKT  270 (312)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~  270 (312)
                      ...+.++|++..++++..+ +.+.+|+....+.......+..   .....+ .+++..++.+   ..++.|.+||+.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA---PSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE---EEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             ceEEEeeccccceeeecccccccccccccceeeeecccccCC---cceeec-cccccccccccccceeeeeeeeecCCCe
Confidence            5667899999988887655 6677787777666655544332   122233 3566665543   345789999999988


Q ss_pred             eeecccCCccceEEEEEcCCCceEE-EeeecCCeeEEEEeec
Q 021459          271 MIQKLDGHTDSVISVTCHPTENKIA-SAGLDGDRTVRVWVQD  311 (312)
Q Consensus       271 ~~~~~~~h~~~v~~l~~~p~~~~l~-~~~~dgd~~v~iw~~~  311 (312)
                      ....+..+ ..+.+++|+|++++|. +++  ++++|++|++.
T Consensus       236 ~~~~~~~~-~~~~~va~spdg~~l~va~~--~~~~i~v~D~~  274 (301)
T d1l0qa2         236 ITARIPVG-PDPAGIAVTPDGKKVYVALS--FCNTVSVIDTA  274 (301)
T ss_dssp             EEEEEECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETT
T ss_pred             EEEEEcCC-CCEEEEEEeCCCCEEEEEEC--CCCeEEEEECC
Confidence            88777643 4579999999999875 444  45699999863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.6e-23  Score=168.68  Aligned_cols=265  Identities=11%  Similarity=0.094  Sum_probs=187.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeec--cCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeeccc----
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGH--SEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHS----  107 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~~~----  107 (312)
                      +++++++.|+.|.|||..+++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.++ +.+..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCccc
Confidence            57999999999999999999998888654  3457899999999987 46678999999999885 4444443332    


Q ss_pred             -ccEEEEEEecCCCEEEEeec------------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459          108 -DFVFCVNFNPQSNLIVSGSF------------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK  174 (312)
Q Consensus       108 -~~v~~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (312)
                       ..+..++|+|+++.++++..            +..+.+||..+++....+..+ ..+..++|+|+|+++++++.+  +.
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~  157 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cc
Confidence             23456889999999887763            567889999999887777644 457789999999999988654  67


Q ss_pred             EEeCCCCceeeEcccCCCCc----------------------EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EE
Q 021459          175 IWDAGEGACLKTLIDDKDPA----------------------VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YT  231 (312)
Q Consensus       175 iwd~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~  231 (312)
                      +||..+++....+.......                      ........+......+..++.+.+||...+..... +.
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             eeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            89998877665542211100                      00001111111222233455688999888875543 23


Q ss_pred             ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          232 GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      .+......   ....+++.+++.+  ++.|.+||+.+++.+..+. +...+.+++|+|+|++|++++.|  ++|++|+..
T Consensus       238 ~~~~~~~~---~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~--~~i~v~D~~  309 (337)
T d1pbyb_         238 IMDVFYFS---TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL--GDLAAYDAE  309 (337)
T ss_dssp             ECSSCEEE---EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS--SEEEEEETT
T ss_pred             CCCcceEE---EEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCC--CcEEEEECC
Confidence            33332222   2344667776654  5899999999998887765 55678999999999999998865  579999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=5.7e-23  Score=168.75  Aligned_cols=271  Identities=13%  Similarity=0.080  Sum_probs=185.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeec
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      ++|++++++|++++.++.|.+||+.+++++..+. .+...+.+++|+|||+++ +++..++.|++||+.+... +.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence            5789999999999999999999999999988876 356678899999999977 4556789999999988633 333321


Q ss_pred             ------ccccEEEEEEecCCCEEEEee------------cCCcEEEEEcCCCeEEEEeeec--CcCeEEEEEccCCCEEE
Q 021459          106 ------HSDFVFCVNFNPQSNLIVSGS------------FDESIRIWEVKTGKCTRVIRAH--SMPVTSVHFNRDGSLIV  165 (312)
Q Consensus       106 ------~~~~v~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~  165 (312)
                            +...+..++|+||++++++++            .+..+.+||..+++....+..+  ...+..+.+++++++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence                  112345788999999887765            3667889998877655444332  23455667777777665


Q ss_pred             EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC--------------------------CCCEEEEEecCCeEEEE
Q 021459          166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP--------------------------NGKFILVGTLDSTLKLW  219 (312)
Q Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~d~~i~v~  219 (312)
                      .+   +.+.+|+..+++....+......  ....++|                          ....++++..+..+.+|
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPLRNWN--RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECSTTCC--CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             eC---CcceEEEccCCCEEEEEecCCCc--cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            43   45889998887766554321110  0011222                          22333444555678888


Q ss_pred             EcCCCcEEEEE-EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          220 NYSAGKFLKIY-TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       220 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      |..++...... ..+....  ....+ .+++.+++.+. ++.|.+||+.+++.+..+. +...+.+++|+||+++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELY--FTGLR-SPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCE--EEEEE-CSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEES
T ss_pred             ECCCCceEEEEeeccccee--EEEEE-eCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEe
Confidence            88877754433 3333322  22233 34555666554 4579999999988877665 445689999999999999998


Q ss_pred             ecCCeeEEEEeec
Q 021459          299 LDGDRTVRVWVQD  311 (312)
Q Consensus       299 ~dgd~~v~iw~~~  311 (312)
                      .|  +.|++|+..
T Consensus       311 ~d--~~v~v~D~~  321 (346)
T d1jmxb_         311 TF--NDLAVFNPD  321 (346)
T ss_dssp             BS--SEEEEEETT
T ss_pred             CC--CcEEEEECc
Confidence            76  489999974

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.7e-20  Score=150.91  Aligned_cols=244  Identities=16%  Similarity=0.162  Sum_probs=184.2

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceee
Q 021459           23 RAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCL  100 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~  100 (312)
                      .....++|+|||++| ++++.++.|++||..+++.+..+..+. .+..++|++++..++ ++..++.+.+|+..+. +..
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  109 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVA  109 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccc-eee
Confidence            457889999999987 466788999999999999988887665 568999999988554 5567789999998875 445


Q ss_pred             eeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC-CeEEEEeC
Q 021459          101 KTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD-GTCKIWDA  178 (312)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~  178 (312)
                      ..+..+ ....++.++|+++.++ ++..++.+.+|+..+.+....+..+ ..+..+.++|++..++++..+ +.+.+|+.
T Consensus       110 ~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         110 GTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccc
Confidence            555443 4567899999998765 5556788999999999887776654 457889999999988877665 56677777


Q ss_pred             CCCceeeEcccCCCCcEEEEEECCCCCEEEEEec---CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE-EE
Q 021459          179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL---DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI-VS  254 (312)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~  254 (312)
                      ...........  ........+++++..++++..   ++.|++||..+++.+..+..+.. ...   ....+++++| ++
T Consensus       188 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-~~~---va~spdg~~l~va  261 (301)
T d1l0qa2         188 VTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAG---IAVTPDGKKVYVA  261 (301)
T ss_dssp             TTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEE---EEECTTSSEEEEE
T ss_pred             cceeeeecccc--cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC-EEE---EEEeCCCCEEEEE
Confidence            66655544322  234556779999998876643   46899999999988877765433 222   2334778765 68


Q ss_pred             eecCCeEEEEECCchheeeccc
Q 021459          255 GSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      ++.+|.|.+||+.+++.+.+++
T Consensus       262 ~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCCeEEEEECCCCeEEEEEe
Confidence            8889999999999988877664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.1e-22  Score=172.60  Aligned_cols=273  Identities=10%  Similarity=0.055  Sum_probs=178.9

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE--Ee---eeccCCEEEEEEccCCCeEEEE-cCCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH--RF---VGHSEGISDLAWSSDSHYICSA-SDDR   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~l~~~-~~d~   86 (312)
                      +...++..|. .+..++|||||++|++++.|+.+++||+.+++...  .+   .+|...+.+++|+|||++++++ ..++
T Consensus        53 ~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          53 KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence            3445666664 58999999999999999999999999999876433  22   2566667788889999987554 5789


Q ss_pred             eEEEEeCCCCceeeeeeecccc-----------cEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEE-EeeecCcCeE
Q 021459           87 TLRIWDARTPFDCLKTLRGHSD-----------FVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTR-VIRAHSMPVT  153 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~-~~~~~~~~v~  153 (312)
                      .+.+||..+. .......+|..           ....+..++++..++....+ +.+.+++........ ....+...+.
T Consensus       132 ~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  210 (426)
T d1hzua2         132 QFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA  210 (426)
T ss_dssp             EEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred             eEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence            9999998875 33444443332           33445566666655544333 455555555443222 2234566788


Q ss_pred             EEEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEcc--------------------------------------------
Q 021459          154 SVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTLI--------------------------------------------  188 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--------------------------------------------  188 (312)
                      .+.++|++++++++.. +..+.+++..+++......                                            
T Consensus       211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~  290 (426)
T d1hzua2         211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  290 (426)
T ss_dssp             EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred             eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence            9999999998776654 4556777766544322110                                            


Q ss_pred             ---------cCCCCcEEEEEECCCCCEEEE-------EecCCeEEEEEcCCCcEEEEEEc------cCCc-eeEEEEEEE
Q 021459          189 ---------DDKDPAVSFAKFSPNGKFILV-------GTLDSTLKLWNYSAGKFLKIYTG------HTNK-KYCITSTFS  245 (312)
Q Consensus       189 ---------~~~~~~~~~~~~~~~~~~l~~-------~~~d~~i~v~d~~~~~~~~~~~~------~~~~-~~~~~~~~~  245 (312)
                               ..+...+..++++|++++|++       +..+++|++||+.+++....+..      +... ....... +
T Consensus       291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~-f  369 (426)
T d1hzua2         291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-Y  369 (426)
T ss_dssp             TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE-E
T ss_pred             ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE-E
Confidence                     011222445679999999995       45678999999998876544321      1111 1233333 4


Q ss_pred             ccCCcEE-EE----eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE
Q 021459          246 VTNGKYI-VS----GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI  294 (312)
Q Consensus       246 ~~~~~~l-~~----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  294 (312)
                      .++|+.+ ++    ++.+|.|.+||..+.++...+.++.      .++|+|++-
T Consensus       370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             CSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            5788866 33    2468999999999998888887664      345666653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=1e-19  Score=151.17  Aligned_cols=284  Identities=10%  Similarity=-0.019  Sum_probs=192.5

Q ss_pred             cccccceEEEEECCCCCEEEEE-----eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------
Q 021459           19 TAHSRAVSCVKFSNDGTLLASA-----SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------   83 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------   83 (312)
                      ..+..++..++++|||+.++..     +..+.+.+||..+++.+..+..+...  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4688899999999999988764     23457999999999999888766543  799999999998874          


Q ss_pred             CCCeEEEEeCCCCceeeeeeecccccE-------EEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459           84 DDRTLRIWDARTPFDCLKTLRGHSDFV-------FCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTS  154 (312)
Q Consensus        84 ~d~~v~~wd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~  154 (312)
                      .++.|.+||..+. +.+.....+....       ..+.|+++++.++...  .++.+.+|+....+.....    ....+
T Consensus        95 ~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTC  169 (373)
T ss_pred             cceEEEEEECCCC-cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----cccee
Confidence            3578999999875 3344444333322       3467888888665544  3567888888876654333    33567


Q ss_pred             EEEccCCCEE-EEeeCCCeEEEEeCCCCceeeEcccC-----CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459          155 VHFNRDGSLI-VSGSHDGTCKIWDAGEGACLKTLIDD-----KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK  228 (312)
Q Consensus       155 ~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  228 (312)
                      +.++|+++.+ ++.+.|+.+.+||...+.........     .........+++++. ++..+.++.+.+|+...+....
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEE
Confidence            8899988754 67889999999998877655443221     112223344566554 4455678899999987765432


Q ss_pred             EE--EccCCce----------eEEE-------EEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          229 IY--TGHTNKK----------YCIT-------STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       229 ~~--~~~~~~~----------~~~~-------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      ..  .......          ..+.       .......+..+++...++.+.+||..+++.+..+. +...+..++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp  327 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ  327 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC
Confidence            21  1111100          0000       01112234456677788899999999998887765 566789999999


Q ss_pred             CCceEEEeeecCCeeEEEEeec
Q 021459          290 TENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       290 ~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ||+.++.++..++++|++||..
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECC
Confidence            9987554444577899999963

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.1e-20  Score=152.60  Aligned_cols=274  Identities=9%  Similarity=0.182  Sum_probs=180.2

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEE--EeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCceeeee--eecccccE
Q 021459           36 LLASASLDKTVIIWSASSLALVH--RFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDCLKT--LRGHSDFV  110 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~~~~--~~~~~~~v  110 (312)
                      .+++++.|+.|++|++.....+.  ....|...+..|+|+|||++|+++ ..|+.|++|++.........  ...+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            35677899999999987543322  334678899999999999988554 55899999998754322221  12233445


Q ss_pred             EEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEEe--eecCcCeEEEEEccCCCEEEEeeC-CCeEEEEeCCCCceeeE
Q 021459          111 FCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKT  186 (312)
Q Consensus       111 ~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~  186 (312)
                      ..++|+||++++++++. ++.|.+|+..........  ..+...+.++.++|++++++.++. +..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            67999999999988875 568999988766544333  345556788999999998887764 45788998766432211


Q ss_pred             -----cccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcE----EEEEEcc----CCceeEEEEEEEccCCcE-
Q 021459          187 -----LIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKF----LKIYTGH----TNKKYCITSTFSVTNGKY-  251 (312)
Q Consensus       187 -----~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~-  251 (312)
                           ...........+.+++++.++.... ..+...+++......    .......    ..........+. +++++ 
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~~~  244 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT-PDGRHL  244 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC-TTSSEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe-cccCce
Confidence                 1112233456678999998877654 456778887644321    1112111    111122223333 55554 


Q ss_pred             EEEeecCCeEEEEECCchheeeccc---CCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459          252 IVSGSEDNCVYVWDLQQKTMIQKLD---GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD  311 (312)
Q Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~  311 (312)
                      ++++..++.+.+|++........+.   .+...+..++|+|+|++|++++.+ +++|++|++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-~~~v~v~~id  306 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-SHHISVYEIV  306 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-TCEEEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-CCeEEEEEEE
Confidence            5566778899999987654433322   234567889999999998877654 3689999765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-20  Score=153.93  Aligned_cols=252  Identities=11%  Similarity=0.053  Sum_probs=179.0

Q ss_pred             ceeeecc--cccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccC-----CEEEEEEccCCCeEEEEc--
Q 021459           14 HFKTLTA--HSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSE-----GISDLAWSSDSHYICSAS--   83 (312)
Q Consensus        14 ~~~~~~~--h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~--   83 (312)
                      ..+++..  +...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++++.  
T Consensus        23 ~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecC
Confidence            3444433  44567899999999987 5667899999999999999888765533     345789999999998775  


Q ss_pred             ----------CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE
Q 021459           84 ----------DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT  153 (312)
Q Consensus        84 ----------~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  153 (312)
                                .+..+.+||..+. +....+.. ...+..++|+|+++++++++.  .+.+||..+++....+..+... .
T Consensus       103 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~  177 (337)
T d1pbyb_         103 VRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-A  177 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-T
T ss_pred             CcceeeeccccccceeeccccCC-eEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-c
Confidence                      3567888998875 44444443 345778899999999998864  4788999998877665443211 1


Q ss_pred             EEEEccCC------------------------CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE
Q 021459          154 SVHFNRDG------------------------SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV  209 (312)
Q Consensus       154 ~~~~~~~~------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
                      ...+.|++                        .....+..++.+.+||..++..................++|++.+++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE
Confidence            11112221                        111222334568889988877655444445556677789999998876


Q ss_pred             EecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          210 GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       210 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      +  ++.|++||+.+++.+..+... ....++   ...++|++|++++.+|.|.+||..+.+.+.+++
T Consensus       258 ~--~~~i~v~d~~~~~~~~~~~~~-~~~~~~---~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         258 A--YNVLESFDLEKNASIKRVPLP-HSYYSV---NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             E--ESEEEEEETTTTEEEEEEECS-SCCCEE---EECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             c--cccEEEEECCCCcEEEEEcCC-CCEEEE---EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            5  589999999999988876543 233333   334789999999999999999999888777664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.4e-19  Score=150.97  Aligned_cols=171  Identities=12%  Similarity=0.009  Sum_probs=126.4

Q ss_pred             eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEe---eeccCCEEEEEEccCCCeE-EEEcCCC
Q 021459           13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRF---VGHSEGISDLAWSSDSHYI-CSASDDR   86 (312)
Q Consensus        13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l-~~~~~d~   86 (312)
                      +..+++..| ..+..++|||||+++++++.|+.+++||+.+++.  ...+   ..|...+.+..|+|||++| +++..++
T Consensus        53 ~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          53 EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCC
Confidence            445566656 4699999999999999999999999999887653  2332   3455666777888999976 6778899


Q ss_pred             eEEEEeCCCCceeeeeeec-----------ccccEEEEEEecCCCEE-EEeecCCcEEEEEcCCCeEEEEee-ecCcCeE
Q 021459           87 TLRIWDARTPFDCLKTLRG-----------HSDFVFCVNFNPQSNLI-VSGSFDESIRIWEVKTGKCTRVIR-AHSMPVT  153 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~  153 (312)
                      .+++||..+. +.+..+..           +......+.++|++..+ ++...++.|.+||..+.+...... .+.....
T Consensus       132 ~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         132 QYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  210 (432)
T ss_dssp             EEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             eEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence            9999999875 33433332           33456678899998875 556667899999998876554433 3445678


Q ss_pred             EEEEccCCCEEEEeeC-CCeEEEEeCCCCceee
Q 021459          154 SVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLK  185 (312)
Q Consensus       154 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~  185 (312)
                      .++|+|+|+++++++. ++.+.++|..+++...
T Consensus       211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             cceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            9999999998777665 4578888887665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=5.2e-19  Score=145.71  Aligned_cols=276  Identities=13%  Similarity=0.091  Sum_probs=174.7

Q ss_pred             eEEEEECCCCCEEEEEe-----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEE
Q 021459           25 VSCVKFSNDGTLLASAS-----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLR   89 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~   89 (312)
                      +.-.+.+||++.++...     .+..+.+||..+++++..+..+..+  .++|+|||++|++.+          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33346689999887653     4567999999999998888765444  799999999887653          478899


Q ss_pred             EEeCCCCceeeeeeeccc-------ccEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcC-------eE
Q 021459           90 IWDARTPFDCLKTLRGHS-------DFVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMP-------VT  153 (312)
Q Consensus        90 ~wd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~-------v~  153 (312)
                      +||..+.. .+..+..+.       .....+.|+|+++.++.++  .+..+.+||..+++....+..+...       ..
T Consensus        82 v~D~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          82 VFDPVTLL-PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EECTTTCC-EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEECCCCC-EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            99998753 333332221       1223578999999877665  4567899999999887766543321       22


Q ss_pred             EEEEccCCCEEEEe-eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE--EE
Q 021459          154 SVHFNRDGSLIVSG-SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK--IY  230 (312)
Q Consensus       154 ~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~  230 (312)
                      .+.++++++.++.. ..++.+.+++.......      ....+....+.+++..++.++.++.+++|++..++...  ..
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCT------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccce------ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            34555555544432 22333444443322111      11122223466777788888999999999998775422  11


Q ss_pred             EccCCce----eE---EEEEEEccCCcEEEEeecC----------CeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459          231 TGHTNKK----YC---ITSTFSVTNGKYIVSGSED----------NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       231 ~~~~~~~----~~---~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                      ..+....    ..   .......+++..++....+          ..|.+||..+++.+..+. +...+.+++|+|+++.
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKP  313 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSC
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCe
Confidence            1111000    00   0001123556665544332          479999999988877775 3456789999999986


Q ss_pred             EEEeeecCCeeEEEEee
Q 021459          294 IASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~  310 (312)
                      ++.++..++++|++|+.
T Consensus       314 ~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCEEEEEEC
Confidence            54444456789999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=7.5e-19  Score=143.80  Aligned_cols=256  Identities=14%  Similarity=0.095  Sum_probs=173.7

Q ss_pred             eceeeec-ccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeecc------CCEEEEEEccCCCeEEEEc-
Q 021459           13 RHFKTLT-AHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHS------EGISDLAWSSDSHYICSAS-   83 (312)
Q Consensus        13 ~~~~~~~-~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~-   83 (312)
                      +..+++. .|.....+++|+|||+++ +++..++.|++||..+++.+..+....      ..+..++|+|||+++++++ 
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            3445554 456678899999999987 555678999999999998877665322      2456799999999888764 


Q ss_pred             -----------CCCeEEEEeCCCCceeeeeeec--ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc
Q 021459           84 -----------DDRTLRIWDARTPFDCLKTLRG--HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM  150 (312)
Q Consensus        84 -----------~d~~v~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  150 (312)
                                 .+..+.+|+..+... ...+..  ....+..+.+++++..++++   +.+.+|++.+++....+..+..
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  184 (346)
T d1jmxb_         109 PTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW  184 (346)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC
T ss_pred             CCcceeeeeccCcceEEEEeccccee-eeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC
Confidence                       466788888765422 211111  12334455666777666543   4589999998887776654332


Q ss_pred             CeEEEEEccCCCE--------------------------EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC
Q 021459          151 PVTSVHFNRDGSL--------------------------IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG  204 (312)
Q Consensus       151 ~v~~~~~~~~~~~--------------------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
                       ...+.++|++..                          +.++..+..+.+||..++.............+....+++++
T Consensus       185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (346)
T d1jmxb_         185 -NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD  263 (346)
T ss_dssp             -CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC
T ss_pred             -ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC
Confidence             222333443332                          23344455678888887776555444455566667788888


Q ss_pred             CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459          205 KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH  278 (312)
Q Consensus       205 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  278 (312)
                      .+++... ++.|++||..+++.+..+.... ....+   ...+++++|++++.||.|++||..+.+.+..++..
T Consensus       264 ~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~-~~~~v---a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         264 PNQIYGV-LNRLAKYDLKQRKLIKAANLDH-TYYCV---AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             TTEEEEE-ESEEEEEETTTTEEEEEEECSS-CCCEE---EECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEec-CCeEEEEECCCCcEEEEEcCCC-CEEEE---EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            8877665 4589999999998887765332 23333   33478999999999999999999999888777643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=4.7e-16  Score=128.72  Aligned_cols=253  Identities=8%  Similarity=-0.053  Sum_probs=170.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeeccCCE-------EEEEEccCCCeEEEEc--CCCe
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGHSEGI-------SDLAWSSDSHYICSAS--DDRT   87 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~--~d~~   87 (312)
                      .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            789999999998875          45789999999999887776655433       3478888888665543  4567


Q ss_pred             EEEEeCCCCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecC------cCeEEEEEccC
Q 021459           88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHS------MPVTSVHFNRD  160 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~  160 (312)
                      +.+|+.... +..    .+.....++.++|+++. +++.+.|+.+.+||...++.......+.      .....+.++++
T Consensus       150 ~~~~~~~~~-~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         150 VGLVVQGGS-SDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             eEEeeccCC-eEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            888887653 222    23334567889999875 4678889999999998887665543321      11234455655


Q ss_pred             CCEEEEeeCCCeEEEEeCCCCceeeEcc--cC---------CCCcEEEEEECCCCCE----------EEEEecCCeEEEE
Q 021459          161 GSLIVSGSHDGTCKIWDAGEGACLKTLI--DD---------KDPAVSFAKFSPNGKF----------ILVGTLDSTLKLW  219 (312)
Q Consensus       161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~----------l~~~~~d~~i~v~  219 (312)
                      +. ++..+.++.+.+|+...........  ..         .........+++++..          ++....++.+.+|
T Consensus       225 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         225 GR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            54 4556678889999887654321110  00         0111223345555544          3445567789999


Q ss_pred             EcCCCcEEEEEEccCCceeEEEEEEEccCCc--EEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      |..+++.+..+..... ...   ....++|+  ++++++.|+.|++||+.+++.+..+.++......|++.+
T Consensus       304 d~~t~~~~~~~~~~~~-~~~---~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         304 TGLVGQTSSQISLGHD-VDA---ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             ECCCCcEEEEecCCCC-eeE---EEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            9999988876653322 222   23346776  457899999999999999999999988877777777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=4.2e-16  Score=127.97  Aligned_cols=254  Identities=9%  Similarity=0.009  Sum_probs=163.6

Q ss_pred             EEEEECCCCCEEEEE----------eCCCeEEEEeCCCcceEEEeeeccC-------CEEEEEEccCCCeEEEEc--CCC
Q 021459           26 SCVKFSNDGTLLASA----------SLDKTVIIWSASSLALVHRFVGHSE-------GISDLAWSSDSHYICSAS--DDR   86 (312)
Q Consensus        26 ~~~~~s~~~~~l~t~----------~~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~d~   86 (312)
                      ..++|||||++|+.+          ..|+.|++||..+++.+..+..+..       ....++|+|++++++.++  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          3478999999999998877664432       234689999999887764  456


Q ss_pred             eEEEEeCCCCceeeeeeecccc-------cEEEEEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459           87 TLRIWDARTPFDCLKTLRGHSD-------FVFCVNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN  158 (312)
Q Consensus        87 ~v~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
                      .+.+|+..+. +.+..+..+..       ....+.+++++..++.. ..++.+.+++......     .+...+....+.
T Consensus       130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  203 (355)
T d2bbkh_         130 AVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYS  203 (355)
T ss_dssp             EEEEEETTTT-EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEE
T ss_pred             eeeeeecCCC-cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeecccc
Confidence            8899998875 34444433221       11234455555544332 2233444444333221     123334556677


Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCceeeEccc--C---------CCCcEEEEEECCCCCEEEEEecC----------CeEE
Q 021459          159 RDGSLIVSGSHDGTCKIWDAGEGACLKTLID--D---------KDPAVSFAKFSPNGKFILVGTLD----------STLK  217 (312)
Q Consensus       159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~l~~~~~d----------~~i~  217 (312)
                      +++..++.++.++.+.+|++..+........  .         .......+.+++++..++....+          ..|.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  283 (355)
T d2bbkh_         204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  283 (355)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence            8888899999999999999887653211000  0         00011235688999888776543          3699


Q ss_pred             EEEcCCCcEEEEEEccCCceeEEEEEEEccCCc--EEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459          218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP  289 (312)
Q Consensus       218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p  289 (312)
                      +||..+++.+..+..... ...   ....++++  ++++++.|+.|.+||+.+++.+..+.++...-..+.+.+
T Consensus       284 v~d~~t~~~~~~~~~~~~-~~~---~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         284 VLDAKTGERLAKFEMGHE-IDS---INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEETTTCCEEEEEEEEEE-ECE---EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             EEeCCCCcEEEEecCCCC-EEE---EEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            999999988776653221 122   23346776  567788899999999999999888877655545555444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4.8e-16  Score=126.36  Aligned_cols=245  Identities=10%  Similarity=0.162  Sum_probs=157.9

Q ss_pred             cccccceEEEEECCCCCEEEEE-eCCCeEEEEeCCCcceEEEe---eeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeC
Q 021459           19 TAHSRAVSCVKFSNDGTLLASA-SLDKTVIIWSASSLALVHRF---VGHSEGISDLAWSSDSHYICSASD-DRTLRIWDA   93 (312)
Q Consensus        19 ~~h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~   93 (312)
                      ..|.+.+..++|+|||++|+++ ..|+.|++|++.........   ..+...+..++|+|||++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            3688899999999999988555 45899999998765432222   234456778999999999988874 678899987


Q ss_pred             CCCcee-eeeeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEe------eecCcCeEEEEEccCCCEEE
Q 021459           94 RTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVI------RAHSMPVTSVHFNRDGSLIV  165 (312)
Q Consensus        94 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~  165 (312)
                      ...... ......+...+.++.++|+++.++.++.+ ..|.+|+..........      .........++|++++..++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            654221 22233455667788999999988877754 56899998665322211      12334567899999998876


Q ss_pred             Eee-CCCeEEEEeCCCCcee----eEcc---c--CCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEc--
Q 021459          166 SGS-HDGTCKIWDAGEGACL----KTLI---D--DKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTG--  232 (312)
Q Consensus       166 ~~~-~d~~i~iwd~~~~~~~----~~~~---~--~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~--  232 (312)
                      ... ..+...+++.......    ....   .  ..........++++++++++. ..++.+.+|++...........  
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence            554 4556777765432211    1110   0  112234556789999877665 4567899998865543222211  


Q ss_pred             -cCCceeEEEEEEEccCCcEEEEe-ecCCeEEEEEC
Q 021459          233 -HTNKKYCITSTFSVTNGKYIVSG-SEDNCVYVWDL  266 (312)
Q Consensus       233 -~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~  266 (312)
                       .......+  . ..++|++|+++ ..++.|.+|++
T Consensus       273 ~~~~~p~~~--a-~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         273 PTETQPRGF--N-VDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             ECSSSCCCE--E-ECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCCeeEE--E-EeCCCCEEEEEECCCCeEEEEEE
Confidence             11111222  2 34789876655 56799999955

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=8.2e-16  Score=127.26  Aligned_cols=280  Identities=9%  Similarity=-0.046  Sum_probs=172.1

Q ss_pred             cccceEEEEECCCCCEE--E-EEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CC
Q 021459           21 HSRAVSCVKFSNDGTLL--A-SASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DD   85 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l--~-t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d   85 (312)
                      +.++...++..++++..  + ++..++  .+.++|..+++.+..+..+...  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            34444555667788753  2 234444  4666799999998888877655  589999999888754          36


Q ss_pred             CeEEEEeCCCCceeeeeeecccc-------cEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459           86 RTLRIWDARTPFDCLKTLRGHSD-------FVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRVIRAHSMPVTSVHF  157 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
                      +.|.+||..+. +.+..+..+..       ....++|+||+++++++. .++.+.+||+.+++....+..+.....   .
T Consensus        96 ~~v~v~D~~t~-~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~  171 (368)
T d1mdah_          96 DYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---H  171 (368)
T ss_dssp             EEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---E
T ss_pred             CeEEEEECCCC-cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---c
Confidence            78999999875 33433332211       123588999999988776 468999999999998887766544321   1


Q ss_pred             ccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-----cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE-
Q 021459          158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-----DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT-  231 (312)
Q Consensus       158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  231 (312)
                      ......++..+.||.+.+++...........     ...........+.+++..+..  ..+.+++++...+....... 
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~  249 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeec
Confidence            1233466677788888888765543221111     111222234556777655443  35667777776554332211 


Q ss_pred             -ccCCc----eeE----EEEEEEccCCcEEEEe-ec--------CCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459          232 -GHTNK----KYC----ITSTFSVTNGKYIVSG-SE--------DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK  293 (312)
Q Consensus       232 -~~~~~----~~~----~~~~~~~~~~~~l~~~-~~--------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~  293 (312)
                       .....    ...    ...... +++..++.. ..        ...|.+||..+++.+..+. +...+..++|+||++.
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~a~~-~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         250 DGNESGRKADNFRSAGFQMVAKL-KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEE-TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSC
T ss_pred             ccccceeeeeeecCCCceeEEEc-CCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCE
Confidence             10000    000    011222 344444332 22        2358999999988887776 4457889999999986


Q ss_pred             EEEeeecCCeeEEEEee
Q 021459          294 IASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       294 l~~~~~dgd~~v~iw~~  310 (312)
                      ++.++..++++|++||.
T Consensus       328 ~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         328 DNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEEEEETTTTEEEEEES
T ss_pred             EEEEEeCCCCeEEEEEC
Confidence            55444446789999986

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=5.2e-14  Score=120.11  Aligned_cols=116  Identities=11%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeC---------CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASL---------DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRT   87 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   87 (312)
                      ++..|...|.++.|||||++|+.++.         ++.+.+||+.+++. ..+..+...+..+.|+|||+.+|.. .++.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence            45667789999999999999988753         46788999998764 5577888999999999999999986 5678


Q ss_pred             EEEEeCCCCceeeeeeecc-----------------cccEEEEEEecCCCEEEEeecCCc-EEEE
Q 021459           88 LRIWDARTPFDCLKTLRGH-----------------SDFVFCVNFNPQSNLIVSGSFDES-IRIW  134 (312)
Q Consensus        88 v~~wd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~s~~~dg~-i~~w  134 (312)
                      +++|+..++........+.                 .+....+.|+|||+.++....|.+ +..|
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            9999987654322111111                 122345779999999998765533 4433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=5.5e-14  Score=116.07  Aligned_cols=250  Identities=10%  Similarity=0.026  Sum_probs=156.0

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeeccC-------CEEEEEEccCCCeEEEEc-CCCeE
Q 021459           27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGHSE-------GISDLAWSSDSHYICSAS-DDRTL   88 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~v   88 (312)
                      .++|+|||+.|+.++          .|+.|++||..+++.+..+..+..       ....++|+|||++|+++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999888754          467899999999998887765432       234689999999998775 57899


Q ss_pred             EEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe------eecCcCeEEEEEccCCC
Q 021459           89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI------RAHSMPVTSVHFNRDGS  162 (312)
Q Consensus        89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~~~~~~  162 (312)
                      .+||+.+. +.......+.....   +......++..+.||.+.++++.........      ..+...+....+.+++.
T Consensus       149 ~~~d~~~~-~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (368)
T d1mdah_         149 AGLSVPGA-SDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM  224 (368)
T ss_dssp             EEEEETTT-EEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEECCCC-cEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence            99999875 44444443332211   1122356677778888888887654322211      12233345667777776


Q ss_pred             EEEEeeCCCeEEEEeCCCCceeeEcccCC-----------CCcEEEEEECCCCCEEEEEecC---------CeEEEEEcC
Q 021459          163 LIVSGSHDGTCKIWDAGEGACLKTLIDDK-----------DPAVSFAKFSPNGKFILVGTLD---------STLKLWNYS  222 (312)
Q Consensus       163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~  222 (312)
                      .+.+.  .+.+.+++...+..........           ......+.+++++..+++...+         ..|.+||..
T Consensus       225 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         225 LVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             EEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             EEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            65544  3455556655443221110000           0011235678888877665332         358999999


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCc--EEEEeecCCeEEEEECCchheeecccCCccceEEEEE
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGK--YIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC  287 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  287 (312)
                      +++.+..+....    ........++++  +++++..++.|.+||..+++.+..++.... -..|++
T Consensus       303 t~~~~~~~~~~~----~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         303 VGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             SCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             CCcEeEEecCCC----ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            998776554221    122223346775  457788899999999999998888774433 244443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=6.3e-14  Score=116.20  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=161.5

Q ss_pred             EEEEeCCCeEEEEeCCCcceEEEeee------------------------------ccCCEEEEEEccCCCeEEEE-cCC
Q 021459           37 LASASLDKTVIIWSASSLALVHRFVG------------------------------HSEGISDLAWSSDSHYICSA-SDD   85 (312)
Q Consensus        37 l~t~~~d~~i~vw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d   85 (312)
                      +++++.+|.|+||++.+++.+.++..                              |.........+|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66788899999999988887766521                              12223444457899988665 467


Q ss_pred             CeEEEEeCCCCceeeeeee-cccccEEEEEEecCCCE--EEEeecCC-----------------cEEEEEcCCCeEEEEe
Q 021459           86 RTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSNL--IVSGSFDE-----------------SIRIWEVKTGKCTRVI  145 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~s~~~dg-----------------~i~~wd~~~~~~~~~~  145 (312)
                      ..|.++|+.+. +..+.+. .+......++|+|+++.  ++..+.+.                 .+..+|..+.+....+
T Consensus        94 ~rVavIDl~t~-k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIM-KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTT-EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCC-cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            89999999885 3333332 24556788999999884  44333321                 1345777777766655


Q ss_pred             eecCcCeEEEEEccCCCEEEEeeCCC-----------------------------------------eEEEEeCCCCcee
Q 021459          146 RAHSMPVTSVHFNRDGSLIVSGSHDG-----------------------------------------TCKIWDAGEGACL  184 (312)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------------~i~iwd~~~~~~~  184 (312)
                      .... ....+.++|+|+++++.+.+.                                         .+.+++......+
T Consensus       173 ~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         173 IVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             ecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            5433 467889999999888776542                                         2223322222233


Q ss_pred             eEcccCCCCcEEEEEECCCCCEEEE-EecCCeEEEEEcCCCcE--------EEEEEccCCc-eeEEEEEEEccCCcEEEE
Q 021459          185 KTLIDDKDPAVSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKF--------LKIYTGHTNK-KYCITSTFSVTNGKYIVS  254 (312)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~  254 (312)
                      ..+.....  ...+.++|||+++++ +..+++|.+||+.+...        ...+.++... ...+... +.+++..+.+
T Consensus       252 ~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~-fd~~g~~yts  328 (441)
T d1qnia2         252 RYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT-FDGRGNAYTT  328 (441)
T ss_dssp             EEECCBSS--CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE-ECSSSEEEEE
T ss_pred             EEEeCCCC--ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccce-ecCCceEEEc
Confidence            33322221  233679999998765 57789999999864211        0111111111 1122223 3457888899


Q ss_pred             eecCCeEEEEECCch----------heeecc-----cCCccceEEEEEcCCCceEEEe
Q 021459          255 GSEDNCVYVWDLQQK----------TMIQKL-----DGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       255 ~~~dg~i~iwd~~~~----------~~~~~~-----~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      ..-|..|..|++...          ....++     .||...+.+.+++|+|++|+++
T Consensus       329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            999999999997421          122333     4777777788899999999998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.54  E-value=4.2e-13  Score=114.37  Aligned_cols=139  Identities=12%  Similarity=0.184  Sum_probs=107.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-----eccCCEEEEEEccCCCeEEEEcC---------CCeEEEEe
Q 021459           27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-----GHSEGISDLAWSSDSHYICSASD---------DRTLRIWD   92 (312)
Q Consensus        27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~~wd   92 (312)
                      .+.|.+++.++..  .++.+.+||..+++....+.     .|...|.++.|+|||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4789999988764  56789999999988755443     34567999999999999998753         46788999


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec------------------CcCeEE
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH------------------SMPVTS  154 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~  154 (312)
                      +.++.  +..+..+.+.+..+.|+|||+.++.. .++.+++|+..+++..+....+                  ......
T Consensus        99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             CCCCc--ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            98752  55677788889999999999999985 5678999999888765433211                  122456


Q ss_pred             EEEccCCCEEEEeeCC
Q 021459          155 VHFNRDGSLIVSGSHD  170 (312)
Q Consensus       155 ~~~~~~~~~l~~~~~d  170 (312)
                      +.|+|||+.++....|
T Consensus       176 ~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             cEECCCCCccceeEec
Confidence            7899999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=2.2e-09  Score=83.51  Aligned_cols=237  Identities=9%  Similarity=0.015  Sum_probs=142.5

Q ss_pred             eEEEEECCCCCEEEEE-eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           25 VSCVKFSNDGTLLASA-SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        25 v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      =+.++++++|++.++. +..+.+..++............-......++++++++++++....+.+++++..+. ..+...
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~-~~~~~~   94 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN-QTVLPF   94 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC-CEECCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc-eeeeee
Confidence            3689999999966654 45577777765544332222221234567899999988777766666666654433 222222


Q ss_pred             ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459          104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC  183 (312)
Q Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (312)
                      . .......++++++++++++-..+..+..++...................++++++++.+++...++.|..+|......
T Consensus        95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            2 224467899999998877766666677777654432221111123457899999999888888888999999765443


Q ss_pred             eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEE
Q 021459          184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYV  263 (312)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  263 (312)
                      .. ...........++++++|+++++....+.|..++...... ..+. ...........+ .+++.++++-..+++|+.
T Consensus       174 ~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-~~~~~~P~~i~~-d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         174 VV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-FTGLNTPLAVAV-DSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             EE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-CCSCCCEEEEEE-CTTCCEEEEEGGGTEEEE
T ss_pred             ee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-cCCCCCeEEEEE-eCCCCEEEEECCCCEEEE
Confidence            32 2222223345678999999888877788888887644332 2221 111111222222 356777777677777766


Q ss_pred             EECC
Q 021459          264 WDLQ  267 (312)
Q Consensus       264 wd~~  267 (312)
                      ++..
T Consensus       250 i~~~  253 (260)
T d1rwia_         250 LTSL  253 (260)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            5543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1.4e-10  Score=95.90  Aligned_cols=234  Identities=14%  Similarity=0.099  Sum_probs=143.4

Q ss_pred             ccccceEEEEECCCCCEEEEE-eCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCC--eEEEEcCCC---------
Q 021459           20 AHSRAVSCVKFSNDGTLLASA-SLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSH--YICSASDDR---------   86 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~~~~~d~---------   86 (312)
                      .|.-..+....+|||++|+.. ..+..|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            355556666778999988665 467899999999998776654 3567899999999988  444444332         


Q ss_pred             --------eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC------------------------------
Q 021459           87 --------TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD------------------------------  128 (312)
Q Consensus        87 --------~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------------------------  128 (312)
                              .+..+|..+. +...++.. .+....+.++|+++++++.+.+                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~-~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETM-DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCGGGEEEEEEEEETTTC-SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccceEEeecCccc-eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                    1234566553 22222222 2345678899999988776643                              


Q ss_pred             -----------CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCCeEEEEeCCCCcee--------eEcc
Q 021459          129 -----------ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDGTCKIWDAGEGACL--------KTLI  188 (312)
Q Consensus       129 -----------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~--------~~~~  188 (312)
                                 +.+.+++....+.+..+...+. ...+.++|||++++ ++..++++.+||+.+-...        ..+.
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                       2333333333344444444443 46789999999765 5678899999998642210        0000


Q ss_pred             --cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC----------CcEEEEEEccCCcee--EEEEEEEccCCcEEEE
Q 021459          189 --DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA----------GKFLKIYTGHTNKKY--CITSTFSVTNGKYIVS  254 (312)
Q Consensus       189 --~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~  254 (312)
                        ...........|+++|..+.+...|.+|..|++..          ...+..+..|.....  ........++|++|++
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence              01111233457999998888889999999999741          112333333322111  0111112478999999


Q ss_pred             ee
Q 021459          255 GS  256 (312)
Q Consensus       255 ~~  256 (312)
                      ++
T Consensus       386 ~~  387 (441)
T d1qnia2         386 LS  387 (441)
T ss_dssp             EE
T ss_pred             cC
Confidence            93

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=4.4e-08  Score=76.83  Aligned_cols=238  Identities=13%  Similarity=0.223  Sum_probs=153.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee------ccCCEEEEEEccC-CCeEEEE-cCCCeEEEEeCCC
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG------HSEGISDLAWSSD-SHYICSA-SDDRTLRIWDART   95 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~-~~d~~v~~wd~~~   95 (312)
                      .-..++++|+++++++-..++.|++|+.+ ++.+..+..      .......+++.++ +..+++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            35789999999988887778899999865 555444421      1123445666554 3444433 3445777777543


Q ss_pred             Cceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459           96 PFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSHDGT  172 (312)
Q Consensus        96 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
                        .....+. ........++..++++.+++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....+.
T Consensus       103 --~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         103 --QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             --CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             --cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence              2222221 233456678888999888887777788888854 45455442  23455778899999999888888999


Q ss_pred             EEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc
Q 021459          173 CKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK  250 (312)
Q Consensus       173 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
                      |.+||.. ++.+.++-.. .......++++++|+.+++-.. ++.|.+|+ .+++.+..+........+..... .+++.
T Consensus       180 V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav-~~dG~  256 (279)
T d1q7fa_         180 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL-MDDGS  256 (279)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE-ETTTE
T ss_pred             eeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE-eCCCc
Confidence            9999974 4555444221 2233556789999997776543 45799998 46777776654433222333233 35676


Q ss_pred             EEEEeecCCeEEEEECCch
Q 021459          251 YIVSGSEDNCVYVWDLQQK  269 (312)
Q Consensus       251 ~l~~~~~dg~i~iwd~~~~  269 (312)
                      +++ +..+++|++|.....
T Consensus       257 l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         257 VVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEE-EETTTEEEEEECSCC
T ss_pred             EEE-EeCCCeEEEEEeeee
Confidence            554 567899999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=3.6e-09  Score=82.31  Aligned_cols=227  Identities=7%  Similarity=-0.020  Sum_probs=138.9

Q ss_pred             CEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459           66 GISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV  144 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  144 (312)
                      ....+++.++|+..++. +..+.+..++............+. .....++++++++++++....+.+++++..++.....
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            45789999999966654 455777777665432222222221 2235678899998887776666777766555544322


Q ss_pred             eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459          145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG  224 (312)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  224 (312)
                      ... ......+++.++++++++-..+..+..++............. ......++++++++.+++...++.|..+|....
T Consensus        94 ~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          94 FDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eee-eeecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcceeeecCCCCEeeeccccccccccccccc
Confidence            222 234688999999998887777777888876554332211111 122345678999998888888889999987655


Q ss_pred             cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459          225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG  298 (312)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~  298 (312)
                      ..............  ...+ .+++.++++...++.|..++.............-.....|+++++++.+++-.
T Consensus       172 ~~~~~~~~~~~~p~--gi~~-d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         172 NQVVLPFTDITAPW--GIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             CEEECCCSSCCSEE--EEEE-CTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             eeeeeeccccCCCc--ccee-eeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            43322112222222  2222 35788888888899999887654322211122234568999999988776644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=3.7e-08  Score=78.62  Aligned_cols=247  Identities=13%  Similarity=0.097  Sum_probs=150.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeC-------CCeEEEEeCCCcceEEEeeec----cCCEEEEEEccCCCeEEEEcCC
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASL-------DKTVIIWSASSLALVHRFVGH----SEGISDLAWSSDSHYICSASDD   85 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d   85 (312)
                      .+...-.....++|+|+|++.++...       ++.|..|+..++.........    ...-..++|.++++.|+++...
T Consensus        12 ~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~   91 (314)
T d1pjxa_          12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             EeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC
Confidence            33334445667899999998776432       467888888876543322211    1235679999999988888777


Q ss_pred             CeEEEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEEEEeec---------------CCcEEEEEcCCCeEEEEeee
Q 021459           86 RTLRIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLIVSGSF---------------DESIRIWEVKTGKCTRVIRA  147 (312)
Q Consensus        86 ~~v~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~---------------dg~i~~wd~~~~~~~~~~~~  147 (312)
                      ..+...+.......+.......   .....+.+.++|++.++-..               .|.|..++.. ++...... 
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-  169 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-
Confidence            7788888765432221111111   12456889999988776422               2344444433 33332222 


Q ss_pred             cCcCeEEEEEccCCC-----EEEEeeCCCeEEEEeCCCCceee------EcccCCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459          148 HSMPVTSVHFNRDGS-----LIVSGSHDGTCKIWDAGEGACLK------TLIDDKDPAVSFAKFSPNGKFILVGTLDSTL  216 (312)
Q Consensus       148 ~~~~v~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  216 (312)
                      .-...+.++|+|++.     ++++-+..+.|..||+.....+.      .+..........++++++|++.++....+.|
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence            222346889998764     55556677888888865332221      1111112234457899999988887788999


Q ss_pred             EEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc-EEEEeecCCeEEEEECCc
Q 021459          217 KLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGSEDNCVYVWDLQQ  268 (312)
Q Consensus       217 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  268 (312)
                      .+||.+.++.+..+........+  +++ .++++ ++++.+.+|.|..+++..
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~--~af-g~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSN--LHF-KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEE--EEE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEeCCCCEEEEEEECCCCCEEE--EEE-eCCCCEEEEEECCCCcEEEEECCC
Confidence            99998877665555544333222  334 45665 667888889998888753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.26  E-value=1e-08  Score=81.51  Aligned_cols=226  Identities=13%  Similarity=0.028  Sum_probs=145.2

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--eEEE
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--KCTR  143 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~  143 (312)
                      .+..++++|||+++++...++.|..++....   ...+......+.+++|+++++++++...++.+..++....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            4678999999999999998999988886643   2233345567889999999999998888888888876533  2222


Q ss_pred             Eee-ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc---------CCCCcEEEEEECCCCCEEEEEecC
Q 021459          144 VIR-AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID---------DKDPAVSFAKFSPNGKFILVGTLD  213 (312)
Q Consensus       144 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
                      ... ........+.+.++++++++-+.++.+..+|...+........         ........+.++. +..+++.+..
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            111 2334578899999999999888888888888876543221111         1111223334433 3345555677


Q ss_pred             CeEEEEEcCCCcEE---EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh-eeecccCCccceEEEEE--
Q 021459          214 STLKLWNYSAGKFL---KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT-MIQKLDGHTDSVISVTC--  287 (312)
Q Consensus       214 ~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--  287 (312)
                      +.|..++.......   ........ ...   ....++|.+.++...++.|..++..... .+......-....+++|  
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~-pdg---ia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTN-IDD---FAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCC-CSS---EEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred             CeEEeccccccccccccccccCCCC-Ccc---eEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence            88888887654321   11111111 111   2223678888888889999999775432 23333333456789999  


Q ss_pred             -cCCCceEEEeee
Q 021459          288 -HPTENKIASAGL  299 (312)
Q Consensus       288 -~p~~~~l~~~~~  299 (312)
                       .||++.|..++.
T Consensus       261 ~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         261 TEGDCTAIYVVTN  273 (302)
T ss_dssp             STTTTTEEEEEEC
T ss_pred             CCCCCCEEEEECC
Confidence             678787765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.3e-08  Score=75.66  Aligned_cols=234  Identities=13%  Similarity=0.151  Sum_probs=136.4

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC---eEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR---TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL  121 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (312)
                      .|.|-|....... .+..+...+.+.+|||||+.||......   .+.+.+.....  ...+..+.+......|+|++..
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence            4666676654443 3344567788999999999998765433   46666665543  3344456677788999999998


Q ss_pred             EEEeecC-CcEE--EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCCCe--EEEEeCCCCceeeEcccCCCCcE
Q 021459          122 IVSGSFD-ESIR--IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHDGT--CKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       122 l~s~~~d-g~i~--~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      ++..... +...  .+.......... ...........+++++..++. ...++.  +...++..+....  ........
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~--~~~~~~~~  173 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--ITWEGSQN  173 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--CCCSSSEE
T ss_pred             eeEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeeccccccee--eecccccc
Confidence            8765543 3333  233333322222 223333445567777665544 344444  4555555443222  22233445


Q ss_pred             EEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec---CCeEEEEECCch
Q 021459          196 SFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE---DNCVYVWDLQQK  269 (312)
Q Consensus       196 ~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~  269 (312)
                      ....++|+++.++..+.++   .+.+.|...+.. .... ......  . ..+.|+|+.|+..+.   ...|.++++..+
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~~~~~--~-p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-STFLDE--T-PSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CSSSCE--E-EEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEee-cCcccc--c-eEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            6678999999988876554   344455544433 2222 222211  1 234578888765443   456888998765


Q ss_pred             heeecccCCccceEEEEEcCC
Q 021459          270 TMIQKLDGHTDSVISVTCHPT  290 (312)
Q Consensus       270 ~~~~~~~~h~~~v~~l~~~p~  290 (312)
                      .. ..+....+.+...+|+|-
T Consensus       249 ~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         249 FK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CE-EECCCSSSEEEEEEECCC
T ss_pred             CE-EEEeCCCCcEEeEEeCCC
Confidence            44 455556677888999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.22  E-value=9.6e-09  Score=81.70  Aligned_cols=203  Identities=9%  Similarity=0.026  Sum_probs=135.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      -+..++++|||+++++...++.|..++.....  ..+......+..++|+++|+++++...++.+..++..........+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            47889999999999999999999888865432  3344556788999999999988888888888887754322222222


Q ss_pred             --ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee----------cCcCeEEEEEccCCCEEEEeeCCC
Q 021459          104 --RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA----------HSMPVTSVHFNRDGSLIVSGSHDG  171 (312)
Q Consensus       104 --~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
                        .........+.+.++++++++.+.++.+..+|...+........          .......+.+.. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence              12334577889999999888888888898889887754332211          012245566653 34556667778


Q ss_pred             eEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459          172 TCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY  230 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  230 (312)
                      .|..++........... .........++++++|+++++...++.|..++.. ++.....
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~  244 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA  244 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEE
Confidence            88888876543221110 0001122346799999988888888999998764 4443333

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.21  E-value=1.2e-07  Score=75.57  Aligned_cols=241  Identities=8%  Similarity=0.070  Sum_probs=141.4

Q ss_pred             CCEEEEEEccCCCeEEEEcC-------CCeEEEEeCCCCceeeeeee---cccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459           65 EGISDLAWSSDSHYICSASD-------DRTLRIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDESIRIW  134 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~-------d~~v~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w  134 (312)
                      .....++|.++|++.++...       ++.|..||..+.........   ...+.-..+.++++++.++++.....|...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567899999997776433       35688888876533221111   111234568999999988888777778888


Q ss_pred             EcCCCeEEEEeeecC----cCeEEEEEccCCCEEEEeeC---------------CCeEEEEeCCCCceeeEcccCCCCcE
Q 021459          135 EVKTGKCTRVIRAHS----MPVTSVHFNRDGSLIVSGSH---------------DGTCKIWDAGEGACLKTLIDDKDPAV  195 (312)
Q Consensus       135 d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (312)
                      |...+..........    ...+.+++.++|++.++-..               .|.+..++.. ++... .... ....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~-~~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTA-FQFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEE-ESSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCC-ccee
Confidence            877654322111111    12567999999998876432               2334444432 22221 1111 1112


Q ss_pred             EEEEECCCCC-----EEEEEecCCeEEEEEcCCCcEEE---EEEccCC-ceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459          196 SFAKFSPNGK-----FILVGTLDSTLKLWNYSAGKFLK---IYTGHTN-KKYCITSTFSVTNGKYIVSGSEDNCVYVWDL  266 (312)
Q Consensus       196 ~~~~~~~~~~-----~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  266 (312)
                      .-++++|+++     ++++-+..+.|..||+.....+.   .+..... ............+|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            3456777664     44445677889999876443322   1111111 1111122233467888888888899999998


Q ss_pred             CchheeecccCCccceEEEEEcCCCceE-EEeeecCCeeEEEEee
Q 021459          267 QQKTMIQKLDGHTDSVISVTCHPTENKI-ASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       267 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~~~~~dgd~~v~iw~~  310 (312)
                      ..+.....+........+++|.|+++.| ++.+  +.++|.-.++
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~--~~g~i~~~~~  297 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEW  297 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET--TTTEEEEEEC
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC--CCCcEEEEEC
Confidence            8776666666555678899999998755 4444  2345555444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=1.6e-07  Score=73.57  Aligned_cols=235  Identities=16%  Similarity=0.229  Sum_probs=146.3

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec------ccccEEEEEEecCCC-EEEE-eecCCcEEEEEcC
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG------HSDFVFCVNFNPQSN-LIVS-GSFDESIRIWEVK  137 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~-~l~s-~~~dg~i~~wd~~  137 (312)
                      ....++++++++++++-.....|++||.+..  .+..+..      ....-..+.+.++.. .+++ .+.++.|..++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC--EEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            3578999999988777667788999987532  2222211      111223445555433 3333 3345567777754


Q ss_pred             CCeEEEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459          138 TGKCTRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDST  215 (312)
Q Consensus       138 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
                       ++....+.. .......+++.+++.++++....+.+.+++.. ++.+..+- .........++++++++.+++....+.
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence             544444432 23446788999999988888888888888864 44444432 223344666778999998888888899


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee-cCCeEEEEECCchheeecccC--CccceEEEEEcCCCc
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQQKTMIQKLDG--HTDSVISVTCHPTEN  292 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~  292 (312)
                      |++||. +++.+..+............+ ..++++++++-. .++.|.+|+. +++.+..+..  .......|++.|++.
T Consensus       180 V~~~d~-~G~~~~~~g~~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~  256 (279)
T d1q7fa_         180 VKVFNY-EGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS  256 (279)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             eeeeec-CCceeeeecccccccCCcccc-cccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence            999996 456665553221111222222 336778777654 4567999984 4555554432  233578999999987


Q ss_pred             eEEEeeecCCeeEEEEee
Q 021459          293 KIASAGLDGDRTVRVWVQ  310 (312)
Q Consensus       293 ~l~~~~~dgd~~v~iw~~  310 (312)
                      .++ +.  .+.+|++|.+
T Consensus       257 l~V-~~--~n~~v~~fr~  271 (279)
T d1q7fa_         257 VVL-AS--KDYRLYIYRY  271 (279)
T ss_dssp             EEE-EE--TTTEEEEEEC
T ss_pred             EEE-Ee--CCCeEEEEEe
Confidence            554 43  4578999875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=8.4e-08  Score=78.23  Aligned_cols=263  Identities=10%  Similarity=0.093  Sum_probs=138.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEe-eeccCCEEEEEEccCCCeEE--EEc-CCCeEEEEeCCC
Q 021459           21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRF-VGHSEGISDLAWSSDSHYIC--SAS-DDRTLRIWDART   95 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~--~~~-~d~~v~~wd~~~   95 (312)
                      ....++-|+|+|+++.|.++.. +.+..|.+.. +...... .........++++++++.++  ++. ..+.+..+    
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~----  112 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN----  112 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE----
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEe----
Confidence            3445667999999999887755 4566665543 2222211 11223344567777776433  221 12333332    


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCeEE
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCK  174 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~  174 (312)
                                        .+.+++........+...++...    ..........-+.++.|+|+|++++++.. ...|.
T Consensus       113 ------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~  170 (365)
T d1jofa_         113 ------------------PFYKFAGYGNVFSVSETGKLEKN----VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW  170 (365)
T ss_dssp             ------------------EESSSCCEEEEEEECTTCCEEEE----EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ------------------EccCCCCcceeEeeeecceecCc----ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEE
Confidence                              22222222111111111111100    00011112223678999999998887754 45788


Q ss_pred             EEeCCCCc-ee--eEc-ccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEE--EEcc---C----------
Q 021459          175 IWDAGEGA-CL--KTL-IDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKI--YTGH---T----------  234 (312)
Q Consensus       175 iwd~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~--~~~~---~----------  234 (312)
                      +|+..... ..  ... ..........+.|+|+++++.+.. .+++|.+|++..+.....  ....   .          
T Consensus       171 ~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (365)
T d1jofa_         171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET  250 (365)
T ss_dssp             EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred             EEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence            88654322 21  111 112234567788999999886654 578999999876543221  1100   0          


Q ss_pred             -CceeEEEEEEEccCCcEEEEeec------CCeEEEEECCchheee------cccCCccceEEEEEcC-CCceEEEeeec
Q 021459          235 -NKKYCITSTFSVTNGKYIVSGSE------DNCVYVWDLQQKTMIQ------KLDGHTDSVISVTCHP-TENKIASAGLD  300 (312)
Q Consensus       235 -~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~------~~~~h~~~v~~l~~~p-~~~~l~~~~~d  300 (312)
                       ............+++++|+++..      .+.|..|++.....+.      ...........++++| +|++|+++.. 
T Consensus       251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~-  329 (365)
T d1jofa_         251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-  329 (365)
T ss_dssp             SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-
T ss_pred             ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC-
Confidence             00011122234578998877632      2347777765432221      1122334567899998 7887777654 


Q ss_pred             CCeeEEEEeec
Q 021459          301 GDRTVRVWVQD  311 (312)
Q Consensus       301 gd~~v~iw~~~  311 (312)
                      ++++|.+|..+
T Consensus       330 ~s~~v~v~~~~  340 (365)
T d1jofa_         330 QEGWLEIYRWK  340 (365)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            45799999864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.18  E-value=4.3e-07  Score=72.48  Aligned_cols=210  Identities=7%  Similarity=0.065  Sum_probs=133.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC----CCeEEEEeCCC
Q 021459           20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD----DRTLRIWDART   95 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~wd~~~   95 (312)
                      .....+..++|+++|++.++-..++.|..|+..+.+..............++++++|+++++...    .+.+...+...
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            34445678999999998777778899999998877665555555667889999999987776533    23344444443


Q ss_pred             Cceeeeeeec--ccccEEEEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EE
Q 021459           96 PFDCLKTLRG--HSDFVFCVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VS  166 (312)
Q Consensus        96 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  166 (312)
                      .. .......  -......+.+.++|++.++-..      .+.+..++...+....... .-...+.++|+|+++.| ++
T Consensus       117 ~~-~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         117 DN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             CS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEE
T ss_pred             ce-eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEe
Confidence            21 1111111  1234567889999987666432      1235555544333222222 22335789999999865 55


Q ss_pred             eeCCCeEEEEeCCCCc-eee----Ec--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459          167 GSHDGTCKIWDAGEGA-CLK----TL--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG  232 (312)
Q Consensus       167 ~~~d~~i~iwd~~~~~-~~~----~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  232 (312)
                      -+..+.|..||+.... ...    ..  ..........++++++|++.++....+.|.+||. .++.+..+..
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence            5677899999875321 111    10  1111122455789999998888888999999995 6787776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.5e-07  Score=73.07  Aligned_cols=207  Identities=14%  Similarity=0.182  Sum_probs=121.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCC---eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEe
Q 021459           17 TLTAHSRAVSCVKFSNDGTLLASASLDK---TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWD   92 (312)
Q Consensus        17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd   92 (312)
                      .+..+...+...+|||||+.||-.....   .+.+.+..++.. ..+..+........|+|+|+.++.... ++...++.
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            4445677788999999999998764432   355556655544 344556778889999999998876543 33222222


Q ss_pred             CCCCceeeeeeecccccEEEEEEecCCCEEEE-eecCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459           93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVS-GSFDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      ......................++++++.++. ...+|.  |.+.++..+.... +...........|+|+++.++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEee
Confidence            11111112222223333445566777665444 344444  5555666554332 3334455667889999998887665


Q ss_pred             CC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEE
Q 021459          170 DG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLK  228 (312)
Q Consensus       170 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~  228 (312)
                      ++   .+.+.+...+..  ..... ........|+|||+.|+..+..   ..|+++++..+...+
T Consensus       191 ~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV--QVLSS-TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             CSSCEEEEEEETTTCCE--EECCC-SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             cCCceeeeEeecccccc--eEeec-CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            44   344455554433  22222 2233456799999998865543   468888887665433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=1.7e-06  Score=68.88  Aligned_cols=229  Identities=12%  Similarity=0.078  Sum_probs=138.5

Q ss_pred             CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC----CcEEEEEcCCCeE
Q 021459           66 GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD----ESIRIWEVKTGKC  141 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~  141 (312)
                      .+..++|.++|++.++-...+.|..|+..... ..............++++++++++++...+    +.+...+...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe-EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            44679999999977777778889999877642 222233334456789999999887765432    3345555555443


Q ss_pred             EEEeee--cCcCeEEEEEccCCCEEEEeeC------CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ec
Q 021459          142 TRVIRA--HSMPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TL  212 (312)
Q Consensus       142 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  212 (312)
                      ......  .......+++.++|++.++...      .+.+..++...+. +..+.. .......++|+|+++.|.++ +.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~-~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ-NISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE-EESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEee-ccceeeeeeeccccceEEEeccc
Confidence            333221  1234678999999987776432      1235555543322 222211 11234557899999866544 66


Q ss_pred             CCeEEEEEcCCC-cEEEEE-----EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc------CCcc
Q 021459          213 DSTLKLWNYSAG-KFLKIY-----TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD------GHTD  280 (312)
Q Consensus       213 d~~i~v~d~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~  280 (312)
                      .+.|..||+... ......     ........ ........+|++.++...+|.|.+||. +++.+..+.      ++..
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~-PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEG-PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSE-EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccc-eeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            789999998643 211111     11111111 122233467888888889999999995 566655543      3344


Q ss_pred             ceEEEEEcCCCceEEEeee
Q 021459          281 SVISVTCHPTENKIASAGL  299 (312)
Q Consensus       281 ~v~~l~~~p~~~~l~~~~~  299 (312)
                      .+.+++|.|....+++.+.
T Consensus       276 ~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEE
T ss_pred             eeeeEEEeCCCCEEEEEcC
Confidence            6789999998877766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.7e-07  Score=78.87  Aligned_cols=273  Identities=10%  Similarity=0.036  Sum_probs=142.3

Q ss_pred             cceEEEEECCCCCEEEEEe---------CCCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459           23 RAVSCVKFSNDGTLLASAS---------LDKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDDRTLRIW   91 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w   91 (312)
                      ..+....||||+++++.+.         ..+.+.++|+.++.....  .......+....|+|||+.||... ++.|.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3566788999999887653         356788999988765332  122234556688999999998875 6788888


Q ss_pred             eCCCCceeeeeeeccccc-----------------EEEEEEecCCCEEEEeecC-CcE----------------------
Q 021459           92 DARTPFDCLKTLRGHSDF-----------------VFCVNFNPQSNLIVSGSFD-ESI----------------------  131 (312)
Q Consensus        92 d~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~s~~~d-g~i----------------------  131 (312)
                      +...+.....+..+..+.                 -..+.|+|||+.|+....| ..|                      
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            776543222221221111                 1467799999998876432 223                      


Q ss_pred             -----------EEEEcCCCeEEEEee------ecCcCeEEEEEccCCCEEEEeeC-C---CeEEEEeCCCCceeeEcccC
Q 021459          132 -----------RIWEVKTGKCTRVIR------AHSMPVTSVHFNRDGSLIVSGSH-D---GTCKIWDAGEGACLKTLIDD  190 (312)
Q Consensus       132 -----------~~wd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~  190 (312)
                                 .++|+.++.......      ....-+..+.|+|++++++.... +   ..+.++|..+++........
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                       333433322111110      01112567889999886665332 2   25778898888755433221


Q ss_pred             CCC----cEEEEEECCCCCEEEE---EecCC--eEEEEEcC------CCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          191 KDP----AVSFAKFSPNGKFILV---GTLDS--TLKLWNYS------AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       191 ~~~----~~~~~~~~~~~~~l~~---~~~d~--~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      .+.    ......|+++|+.++.   .-.+|  .++..++.      .+..+..+....-.+..+. .+...++.+.+++
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~-~~d~~~~~vyF~a  378 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL-AYDEKGNKIYFLS  378 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE-EEETTTTEEEEEE
T ss_pred             CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEE-EEcCCCCEEEEEE
Confidence            111    1123458899874332   22222  34443332      1121222221111111111 1222333344455


Q ss_pred             ecC--CeEEEEEC--Cchheeecc---cCCccceEEEEEcCCCceEEEe
Q 021459          256 SED--NCVYVWDL--QQKTMIQKL---DGHTDSVISVTCHPTENKIASA  297 (312)
Q Consensus       256 ~~d--g~i~iwd~--~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~~~  297 (312)
                      ..+  +.-++|.+  ........+   ........++.|+|++++++..
T Consensus       379 ~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~  427 (465)
T d1xfda1         379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (465)
T ss_dssp             SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEE
Confidence            443  23344443  322222222   1234456788999999988744

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=6.1e-07  Score=72.99  Aligned_cols=160  Identities=11%  Similarity=0.160  Sum_probs=98.8

Q ss_pred             CEEEEEEccCCCeEEEEcC-CCeEEEEeCCCCcee--eeee--ecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCC
Q 021459           66 GISDLAWSSDSHYICSASD-DRTLRIWDARTPFDC--LKTL--RGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTG  139 (312)
Q Consensus        66 ~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~  139 (312)
                      .+.++.|+|+|+++++++. ...|.+|+.......  ....  .........+.|+|++++++... .+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998887754 457888875432221  1111  12234567899999999875554 5688999998765


Q ss_pred             eEEEEe--ee-----------------cCcCeEEEEEccCCCEEEEeeC------CCeEEEEeCCCCceeeEc---c--c
Q 021459          140 KCTRVI--RA-----------------HSMPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGEGACLKTL---I--D  189 (312)
Q Consensus       140 ~~~~~~--~~-----------------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~---~--~  189 (312)
                      +.....  ..                 +......+.++|+|++++++..      ...|..|++.....+...   .  .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            322111  10                 0112457889999999887643      234777776543222111   0  1


Q ss_pred             CCCCcEEEEEECC-CCCEEEEE-ecCCeEEEEEcCCCc
Q 021459          190 DKDPAVSFAKFSP-NGKFILVG-TLDSTLKLWNYSAGK  225 (312)
Q Consensus       190 ~~~~~~~~~~~~~-~~~~l~~~-~~d~~i~v~d~~~~~  225 (312)
                      ........+.++| +|++|+++ ..++.|.+|+++...
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1122233456887 78988776 467899999876554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-07  Score=78.48  Aligned_cols=202  Identities=12%  Similarity=0.098  Sum_probs=123.3

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec---cCCEEEEEEccCCCeEEEEc---------CCCeEEEEeCCC
Q 021459           28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH---SEGISDLAWSSDSHYICSAS---------DDRTLRIWDART   95 (312)
Q Consensus        28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---------~d~~v~~wd~~~   95 (312)
                      ..|.+++.++.. ..+|.|.+|+..+++....+..+   ...+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            368888877654 56788999999877653333322   23567888999999887763         356788999876


Q ss_pred             Cce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-cCc-----------------CeEEEE
Q 021459           96 PFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-HSM-----------------PVTSVH  156 (312)
Q Consensus        96 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~-----------------~v~~~~  156 (312)
                      +.. .+.........+....|+|||+.++... ++.|.+.+...+...+.... ...                 .-..+.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            432 1222222334455678999999988765 56788888776655443321 111                 124678


Q ss_pred             EccCCCEEEEeeCC-Ce---------------------------------EEEEeCCCCceeeEccc-----CCCCcEEE
Q 021459          157 FNRDGSLIVSGSHD-GT---------------------------------CKIWDAGEGACLKTLID-----DKDPAVSF  197 (312)
Q Consensus       157 ~~~~~~~l~~~~~d-~~---------------------------------i~iwd~~~~~~~~~~~~-----~~~~~~~~  197 (312)
                      |||||+.|+....| ..                                 +.++|+..+........     ..+..+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999998875422 22                                 23344433222111110     01123456


Q ss_pred             EEECCCCCEEEEEec-C---CeEEEEEcCCCcEEEEEE
Q 021459          198 AKFSPNGKFILVGTL-D---STLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~-d---~~i~v~d~~~~~~~~~~~  231 (312)
                      +.|++++++++.... +   ..+.++|..+++....+.
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            789999886665422 2   257888998888765554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.57  E-value=7.5e-05  Score=58.33  Aligned_cols=222  Identities=14%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             EEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee
Q 021459           69 DLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA  147 (312)
Q Consensus        69 ~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  147 (312)
                      +..|++....|. +=-..+.|..||..++......   ....+.++.+.++++++++ +.+ .|..+|..+++.......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456777544443 4335678888998775432222   2345778888888877665 444 588999998875443321


Q ss_pred             c----CcCeEEEEEccCCCEEEEeeCC----CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEE
Q 021459          148 H----SMPVTSVHFNRDGSLIVSGSHD----GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKL  218 (312)
Q Consensus       148 ~----~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v  218 (312)
                      .    ...++.+.+.|+|++.++....    +.-.+|.+..++..... .. -.....+.++++++.+... +..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-AD-ISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-ec-cCCcceeeecCCCceEEEeecccceeeE
Confidence            1    2347889999999977765432    23455555555433222 21 2234557799999866554 56788999


Q ss_pred             EEcCCCc-----EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc-CCCc
Q 021459          219 WNYSAGK-----FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH-PTEN  292 (312)
Q Consensus       219 ~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-p~~~  292 (312)
                      |++....     ....+.................+|.+.++.-..|.|..||. .++.+..+.--...+++++|- |+.+
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            9874321     11111111111111222233467777777777889999995 566777766545678999995 6766


Q ss_pred             eEEEee
Q 021459          293 KIASAG  298 (312)
Q Consensus       293 ~l~~~~  298 (312)
                      .|...+
T Consensus       254 ~LyvTt  259 (295)
T d2ghsa1         254 RLLVTS  259 (295)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            655433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.54  E-value=4.8e-05  Score=58.56  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             EEccC--CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC-----cEEEEEcCCCeEE
Q 021459           71 AWSSD--SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE-----SIRIWEVKTGKCT  142 (312)
Q Consensus        71 ~~~~~--~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-----~i~~wd~~~~~~~  142 (312)
                      ..+|+  |+.++..+ ++.|.+.|+..+.  .+.+..+.+.....+|+|||+.|+.... ++     .|.+++...++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35788  88887764 5678888988753  3445556677888999999998875532 22     3777788877655


Q ss_pred             EEeee------cCcCeEEEEEccCCCEEEEee
Q 021459          143 RVIRA------HSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus       143 ~~~~~------~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      +....      .........|+|+|+.++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            43211      112346788999999887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.48  E-value=2.3e-05  Score=60.48  Aligned_cols=229  Identities=16%  Similarity=0.166  Sum_probs=117.1

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC----CC--eEEEEeCCCCceee
Q 021459           29 KFSND--GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD----DR--TLRIWDARTPFDCL  100 (312)
Q Consensus        29 ~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~--~v~~wd~~~~~~~~  100 (312)
                      ..+||  |+.++-.+. +.|.+.++.+++.. .+..+...+...+|+|||+.|+....    +.  .|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  998887654 57888899887764 56666677889999999998886532    22  36666766543221


Q ss_pred             eee-----ecccccEEEEEEecCCCEEEEeecC------CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459          101 KTL-----RGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH  169 (312)
Q Consensus       101 ~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
                      .+.     ...........|+|+++.++.....      ..+...+...+.....   +........+.+++..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCS
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecc
Confidence            111     1112334678899999988765332      2244556555543222   2222233333333333333322


Q ss_pred             CCe-----------EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec--CCeEEEEEcCCCcEEEEEEccCCc
Q 021459          170 DGT-----------CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL--DSTLKLWNYSAGKFLKIYTGHTNK  236 (312)
Q Consensus       170 d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~  236 (312)
                      +..           ........... ....... .......+.++. .+.....  ...|.++|+.+++.... ......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~l-t~~~~~  235 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMS-THVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKH-TSFTDY  235 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEE-EEEECCS-SCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEEC-CCCCSS
T ss_pred             ccceeeeeccCCcceeeeeccccce-eeccCCc-cccceeeeeccc-cceecccccccceEEEeCCCCceEEe-ecCCCc
Confidence            211           11111111111 1111111 112222344432 2222222  34678888876654332 222211


Q ss_pred             eeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459          237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM  271 (312)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  271 (312)
                       . .. .+ .++|+.|+. ..+|.|+++|+.+++.
T Consensus       236 -~-~~-~~-SpDG~~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         236 -Y-PR-HL-NTDGRRILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             -C-EE-EE-EESSSCEEE-EETTEEEEECTTTCCE
T ss_pred             -c-cc-cC-cCCCCEEEE-EeCCEEEEEECCCCCE
Confidence             1 11 23 367777665 4568899999877654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00017  Score=56.18  Aligned_cols=221  Identities=14%  Similarity=0.067  Sum_probs=137.0

Q ss_pred             EEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee-eeee
Q 021459           26 SCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC-LKTL  103 (312)
Q Consensus        26 ~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~-~~~~  103 (312)
                      .+..|++... +..+=-..+.|..|+..+++..  .......+.++++.+++.+++++ .+ .+.++|..++... +...
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT--VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE--EEECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence            4567887555 4444446688999998887643  22345678899999999877754 44 5888998765321 1111


Q ss_pred             ec--ccccEEEEEEecCCCEEEEeecC----CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEE
Q 021459          104 RG--HSDFVFCVNFNPQSNLIVSGSFD----ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIW  176 (312)
Q Consensus       104 ~~--~~~~v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iw  176 (312)
                      ..  .......+.+.|+|++.++....    +.-.+|.+..++......... ....+.|+++++.+ ++-+..+.|..+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~-~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS-IPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES-SEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC-CcceeeecCCCceEEEeecccceeeEe
Confidence            11  12346788899999876664322    345667777776555443322 35789999999855 455667788888


Q ss_pred             eCCCCc------e-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459          177 DAGEGA------C-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       177 d~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      ++....      . ..............++++.+|++.++.-..+.|..||. +++.+..+.-.....  ..++|--++.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~--T~~~FGG~d~  252 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT--TCPAFIGPDA  252 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE--EEEEEESTTS
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCce--EEEEEeCCCC
Confidence            764211      1 11111122334566778999998887777889999995 677777776544332  2334444454


Q ss_pred             c-EEEE
Q 021459          250 K-YIVS  254 (312)
Q Consensus       250 ~-~l~~  254 (312)
                      + +++|
T Consensus       253 ~~LyvT  258 (295)
T d2ghsa1         253 SRLLVT  258 (295)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            4 3344

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.36  E-value=0.00023  Score=57.56  Aligned_cols=276  Identities=9%  Similarity=0.049  Sum_probs=141.4

Q ss_pred             cceEEEEECCCCCEEEEEeCC-----C------eEEEEeCCCcceEE--E-eeeccCCEEEEEEccCCCeEEEEcCC-Ce
Q 021459           23 RAVSCVKFSNDGTLLASASLD-----K------TVIIWSASSLALVH--R-FVGHSEGISDLAWSSDSHYICSASDD-RT   87 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d-----~------~i~vw~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~l~~~~~d-~~   87 (312)
                      .++.......+|+.++.|+.+     +      .+.+||..++....  . ...+.......++.+++.+++.|+.+ ..
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            344445556788888888742     1      36789988764321  1 12222223456788999999988655 58


Q ss_pred             EEEEeCCCCcee-eeeeecccccEEEEEEecCCCEEEEeecC------CcEEEEEcCCCeEEEEeee---------cCc-
Q 021459           88 LRIWDARTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIWEVKTGKCTRVIRA---------HSM-  150 (312)
Q Consensus        88 v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~---------~~~-  150 (312)
                      +.+||..+..-. ...+. .......++..+|++.++.++.+      ..+.+||..+.+-...-..         +.. 
T Consensus       100 ~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  178 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL  178 (387)
T ss_dssp             EEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred             eeEecCccCccccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence            999998653211 11111 11122345667889998888753      3589999988753321100         000 


Q ss_pred             ----CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc--C------CCCcEEEEEECCCCCEEEEEecCC----
Q 021459          151 ----PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID--D------KDPAVSFAKFSPNGKFILVGTLDS----  214 (312)
Q Consensus       151 ----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~l~~~~~d~----  214 (312)
                          .-..+...++++.+..+...+.+..+|..+.........  .      .......+....+++.++.|+...    
T Consensus       179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~  258 (387)
T d1k3ia3         179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  258 (387)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCC
Confidence                001122345677777777777777777766543221100  0      001112222334667777765421    


Q ss_pred             ----eEEEEEcCCCcE-EEEEEccC--CceeEEEEEEEccCCcEEEEeecCC-----------eEEEEECCchh--eeec
Q 021459          215 ----TLKLWNYSAGKF-LKIYTGHT--NKKYCITSTFSVTNGKYIVSGSEDN-----------CVYVWDLQQKT--MIQK  274 (312)
Q Consensus       215 ----~i~v~d~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~--~~~~  274 (312)
                          ...+.+...... ........  ............+++++++.|+.++           .+.+||..+.+  .+..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~  338 (387)
T d1k3ia3         259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  338 (387)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             cccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCC
Confidence                233333322111 01111100  0000011122336788999887531           47789986543  2222


Q ss_pred             ccCCccceEEEEEcCCCceEEEeee
Q 021459          275 LDGHTDSVISVTCHPTENKIASAGL  299 (312)
Q Consensus       275 ~~~h~~~v~~l~~~p~~~~l~~~~~  299 (312)
                      +..-...-....+.++++.|+.||.
T Consensus       339 ~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         339 NSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEEECCCCEEEEEeCC
Confidence            2110111122345799999998884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.59  E-value=0.016  Score=49.12  Aligned_cols=252  Identities=10%  Similarity=0.081  Sum_probs=137.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeecc----CCEEEEEEccCCCeEEEEc------CCCeEEEEeCCCCceeeeeee
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHS----EGISDLAWSSDSHYICSAS------DDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~------~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      ..|+.++.|+.+.-.|.++++.+.......    ..+++--.-.++ .++.+.      .+|.|+-+|+.++...-+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            456677888988888999998876553211    111110011123 344443      367899999988754322110


Q ss_pred             cc------------------------------------cccE-EEEEEecCCCEEEEeec----------------CCcE
Q 021459          105 GH------------------------------------SDFV-FCVNFNPQSNLIVSGSF----------------DESI  131 (312)
Q Consensus       105 ~~------------------------------------~~~v-~~~~~~~~~~~l~s~~~----------------dg~i  131 (312)
                      ..                                    ...+ ...+++++...++.+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            00                                    0111 12456666666554433                2356


Q ss_pred             EEEEcCCCeEEEEeeecCcCe---------EEEEEccCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCC--------
Q 021459          132 RIWEVKTGKCTRVIRAHSMPV---------TSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDK--------  191 (312)
Q Consensus       132 ~~wd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------  191 (312)
                      .-.|.++|+..-.++.....+         .......+++   .++..+.+|.+.++|..+++.+.......        
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            777999998877665432211         1222223443   46678899999999988887653211000        


Q ss_pred             -----------------CCcE-------------EEEEECCCCCEEEEEecC----------------------------
Q 021459          192 -----------------DPAV-------------SFAKFSPNGKFILVGTLD----------------------------  213 (312)
Q Consensus       192 -----------------~~~~-------------~~~~~~~~~~~l~~~~~d----------------------------  213 (312)
                                       ....             ...+++|+...+.+...+                            
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                             0000             113466666666554333                            


Q ss_pred             ---------CeEEEEEcCCCcEEEEEEccCCce-eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc--C--Cc
Q 021459          214 ---------STLKLWNYSAGKFLKIYTGHTNKK-YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD--G--HT  279 (312)
Q Consensus       214 ---------~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~--h~  279 (312)
                               |.|.-+|+.+++.+-......... -.+.     ..+.++++|+.||.++.+|.++++.+-++.  +  ..
T Consensus       435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~-----TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a  509 (571)
T d2ad6a1         435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY-----TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEE-----ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeE-----ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence                     345566666666554432211110 0111     235677889999999999999998885543  2  22


Q ss_pred             cceEEEEEcCCCceEE
Q 021459          280 DSVISVTCHPTENKIA  295 (312)
Q Consensus       280 ~~v~~l~~~p~~~~l~  295 (312)
                      .+   +.+..+|++++
T Consensus       510 ~P---~ty~~dGkqYi  522 (571)
T d2ad6a1         510 SP---MTYSFKGKQYI  522 (571)
T ss_dssp             CC---EEEEETTEEEE
T ss_pred             cc---eEEEECCEEEE
Confidence            23   34555776443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.49  E-value=0.015  Score=46.34  Aligned_cols=155  Identities=12%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             EccCCCeEEEEcCC-----C------eEEEEeCCCCcee-ee-eeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcC
Q 021459           72 WSSDSHYICSASDD-----R------TLRIWDARTPFDC-LK-TLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVK  137 (312)
Q Consensus        72 ~~~~~~~l~~~~~d-----~------~v~~wd~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~  137 (312)
                      ...+|+.++.|+.+     +      .+.+||+.+..-. .. ....+........+.+++++++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            34456666665532     1      3678998764211 11 112233333456678999999988766 579999998


Q ss_pred             CCeEEEEeeec-CcCeEEEEEccCCCEEEEeeCC------CeEEEEeCCCCceeeEcccC--------C-----CCcEEE
Q 021459          138 TGKCTRVIRAH-SMPVTSVHFNRDGSLIVSGSHD------GTCKIWDAGEGACLKTLIDD--------K-----DPAVSF  197 (312)
Q Consensus       138 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~--------~-----~~~~~~  197 (312)
                      +.+-...-... ...-..++..+||++++.|+.+      ..+.+||..+.+........        .     ......
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW  186 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence            87654321111 1122356677899999988753      35889998876543211000        0     000111


Q ss_pred             EEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459          198 AKFSPNGKFILVGTLDSTLKLWNYSAGKF  226 (312)
Q Consensus       198 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  226 (312)
                      +...++|+.+..+..++.+.++|......
T Consensus       187 ~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             EEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            23455677777777777777777666554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.014  Score=44.38  Aligned_cols=226  Identities=12%  Similarity=0.185  Sum_probs=130.6

Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc-
Q 021459           29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS-  107 (312)
Q Consensus        29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-  107 (312)
                      -.+|..+.||--+ ...+.++|+++.+.+....- .+.|.-=.|-.+.. |+.. .+..|+-|+++....+.+.+..|. 
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lV-T~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSE-EEEE-CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCE-EEEE-cCCceEEEcccCCCCchhhhhhccc
Confidence            4567777776654 46899999999887766553 35565566765554 4433 356899999966545555555553 


Q ss_pred             ---ccEEEEEEecCCCEEEEee---c----CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC---CEEEEe---eCCC
Q 021459          108 ---DFVFCVNFNPQSNLIVSGS---F----DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG---SLIVSG---SHDG  171 (312)
Q Consensus       108 ---~~v~~~~~~~~~~~l~s~~---~----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~---~~d~  171 (312)
                         ..|..-..+++.++++-.+   .    .|.+.+|..+.+. .+.+++|......+...-+.   ++|+-+   ...+
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence               2455555677788765433   1    3678899987654 45566665433333222111   122221   2235


Q ss_pred             eEEEEeCCCCce--------eeEcc-cC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459          172 TCKIWDAGEGAC--------LKTLI-DD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC  239 (312)
Q Consensus       172 ~i~iwd~~~~~~--------~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  239 (312)
                      .+.+.++.....        ...+. ..   .+-++ .+..++.-..+..-+.-|.+++||+.++..+..-.-..+... 
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv-amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF-  301 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF-  301 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE-EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE-
Confidence            788888765211        01111 11   12223 345677777888889999999999999998765544444332 


Q ss_pred             EEEEEEccCCcEEEEeecCCeEEE
Q 021459          240 ITSTFSVTNGKYIVSGSEDNCVYV  263 (312)
Q Consensus       240 ~~~~~~~~~~~~l~~~~~dg~i~i  263 (312)
                      +. +.. .+..=+++...+|.|..
T Consensus       302 ~~-a~~-~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         302 VT-APH-EATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EE-EEE-TTTTEEEEEETTSEEEE
T ss_pred             Ee-ccC-CCCceEEEECCCCeEEE
Confidence            11 222 23333444556676543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.016  Score=43.86  Aligned_cols=230  Identities=7%  Similarity=-0.037  Sum_probs=129.5

Q ss_pred             eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCCCCce--eee-eeecccccEEEEEEecCCC
Q 021459           45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDARTPFD--CLK-TLRGHSDFVFCVNFNPQSN  120 (312)
Q Consensus        45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~  120 (312)
                      .|+..++.+.+....+ .....+..+.|++.++.|.-.. .++.|.--++.....  ... ...........+++.+.+.
T Consensus        11 ~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            4777777765443322 3445677899998877776553 455666555542111  111 1112223455688877665


Q ss_pred             EEEEe-ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee--CCCeEEEEeCCCCceeeEcccCCCCcEEE
Q 021459          121 LIVSG-SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS--HDGTCKIWDAGEGACLKTLIDDKDPAVSF  197 (312)
Q Consensus       121 ~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (312)
                      .|... ...+.|.+.++..................++++|...++.-..  ..+.|.-.++.... ...+....-.....
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNG  168 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeE
Confidence            55544 4557899999887665554544455678899998655554332  33456666654332 23333333334566


Q ss_pred             EEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          198 AKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       198 ~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      +++++.++.|..+ ...+.|...|+........................  ++.+..+-..++.|...+..++.....+.
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            7788877766665 55678998898665444444333222222322222  34555555677888887776665554444


Q ss_pred             CC
Q 021459          277 GH  278 (312)
Q Consensus       277 ~h  278 (312)
                      ..
T Consensus       247 ~~  248 (266)
T d1ijqa1         247 EN  248 (266)
T ss_dssp             CS
T ss_pred             cC
Confidence            33

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.03  Score=42.23  Aligned_cols=209  Identities=6%  Similarity=-0.034  Sum_probs=123.9

Q ss_pred             ecccccceEEEEECCCCCEEEEE-eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCC
Q 021459           18 LTAHSRAVSCVKFSNDGTLLASA-SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDART   95 (312)
Q Consensus        18 ~~~h~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~   95 (312)
                      +..+...+.+++|.+.++.|.-+ ..++.|+..++........+......+..+++..-+..|..+ ...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33455568889999888777665 455788888877655443333333568899998766666544 5567899998875


Q ss_pred             CceeeeeeecccccEEEEEEecCCCEEEEeecC-C--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCCC
Q 021459           96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-E--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDG  171 (312)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~  171 (312)
                      ... .............++++|...+++..... +  .|..-++............-.....+++.+.++.|..+ ...+
T Consensus       111 ~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            432 11222223456788999977776644332 2  34444554333222222222345789998877666444 5667


Q ss_pred             eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEE
Q 021459          172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYT  231 (312)
Q Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~  231 (312)
                      .|...|+..... ..+......+. .+++.  +..|... ...+.|...|..+++.+..+.
T Consensus       190 ~I~~~~~~g~~~-~~v~~~~~~P~-~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         190 RAECLNPAQPGR-RKVLEGLQYPF-AVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEEEETTEEEE-EEEEECCCSEE-EEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCe-EEEECCCCCcE-EEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            888888865433 22222222223 33343  3444444 456788888888887666553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.10  E-value=0.045  Score=43.83  Aligned_cols=188  Identities=11%  Similarity=0.138  Sum_probs=103.4

Q ss_pred             CCCeEEEEc-CCCeEEEEeCCCCceeeeeeec-ccccEEEEEEe--cCCCEEEEeecC------------------CcEE
Q 021459           75 DSHYICSAS-DDRTLRIWDARTPFDCLKTLRG-HSDFVFCVNFN--PQSNLIVSGSFD------------------ESIR  132 (312)
Q Consensus        75 ~~~~l~~~~-~d~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~s~~~d------------------g~i~  132 (312)
                      ||++|++.. .+..|-+-|+.+- ++.+...- ....+..++..  |...+++..+..                  +.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~f-kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcce-eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            788887764 5677888888763 43332211 12233444443  344566665552                  2356


Q ss_pred             EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC---------------eEEEEe--------------------
Q 021459          133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG---------------TCKIWD--------------------  177 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd--------------------  177 (312)
                      +.|..+.+........ .....+.++++|+++++.+.+.               .+.+++                    
T Consensus       177 ~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            7788888776555433 3456789999999988876431               123333                    


Q ss_pred             ---CCCC---ceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcE--------EEEEEccCC-ceeEEE
Q 021459          178 ---AGEG---ACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKF--------LKIYTGHTN-KKYCIT  241 (312)
Q Consensus       178 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--------~~~~~~~~~-~~~~~~  241 (312)
                         .+..   ..++.+.....  ...+..+|||+++++++ .+.++.++|++.-..        .....+... ..-.+.
T Consensus       256 VVD~~~~~~~~v~~yIPVpKs--PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANN--PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESS--CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eecccccCCcceeEEEecCCC--CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence               2210   00111111111  12356899999988764 688999999863110        000111110 111233


Q ss_pred             EEEEccCCcEEEEeecCCeEEEEECC
Q 021459          242 STFSVTNGKYIVSGSEDNCVYVWDLQ  267 (312)
Q Consensus       242 ~~~~~~~~~~l~~~~~dg~i~iwd~~  267 (312)
                      ..|. .+|....|---|..|.-|++.
T Consensus       334 t~fd-~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         334 TAFD-GRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEC-TTSEEEEEETTTTEEEEEEHH
T ss_pred             cccC-CCceEEEEeeccceEEEEecc
Confidence            3343 456666666789999999984

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.94  E-value=0.065  Score=42.92  Aligned_cols=193  Identities=16%  Similarity=0.154  Sum_probs=111.0

Q ss_pred             EEEEC---CCCCEEEEEe-CCCeEEEEeCCCcceEEEeee-ccCCEEEEEEcc--CCCeEEEEcCCC-------------
Q 021459           27 CVKFS---NDGTLLASAS-LDKTVIIWSASSLALVHRFVG-HSEGISDLAWSS--DSHYICSASDDR-------------   86 (312)
Q Consensus        27 ~~~~s---~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d~-------------   86 (312)
                      .+++.   +||++|+... .+..|-+-|+.+.+....+.- -...+..++..+  ...|++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45554   3888887765 568888889998876543332 234566666654  455777765532             


Q ss_pred             -----eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC---------------cEEEEEc----------
Q 021459           87 -----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE---------------SIRIWEV----------  136 (312)
Q Consensus        87 -----~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---------------~i~~wd~----------  136 (312)
                           .+.+.|..+.. ...... -.+....+.++++|+++++.+.+.               .+.+++.          
T Consensus       169 ~~y~~~~t~ID~~tm~-V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWE-VAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTE-EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCce-EEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 24566766542 222221 122344678899999988776432               1333332          


Q ss_pred             -------------CCC---eEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCcee-------eE-c--cc
Q 021459          137 -------------KTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGACL-------KT-L--ID  189 (312)
Q Consensus       137 -------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~-------~~-~--~~  189 (312)
                                   +..   ..+..+... .....+..+|||+++++++ .+.++.++|+++-...       +. +  ..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                         210   111112111 2235688999999887655 5789999998631110       00 0  00


Q ss_pred             CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          190 DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                      .....-...+|+..|.-..+--.|.+|.-|++.
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            111122345688888655555689999999984

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.82  E-value=0.073  Score=41.65  Aligned_cols=153  Identities=8%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             EEEEccCCCeEEEEc------------CCCeEEEEeCCCCceeeeeeecccc-------cEEEEE--EecCCC-EEEEee
Q 021459           69 DLAWSSDSHYICSAS------------DDRTLRIWDARTPFDCLKTLRGHSD-------FVFCVN--FNPQSN-LIVSGS  126 (312)
Q Consensus        69 ~~~~~~~~~~l~~~~------------~d~~v~~wd~~~~~~~~~~~~~~~~-------~v~~~~--~~~~~~-~l~s~~  126 (312)
                      +|+..|+|..+++++            ..|.+.++|+.+.......+.-...       .-.-+.  -.+++. .|++..
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            455566665544432            1478888988654332222111000       012222  244555 344443


Q ss_pred             ---cCCcEEEEEcCCCe-EEEEeee--c--CcCeEEEEEccCCCEEEEee-----------------CCCeEEEEeCCCC
Q 021459          127 ---FDESIRIWEVKTGK-CTRVIRA--H--SMPVTSVHFNRDGSLIVSGS-----------------HDGTCKIWDAGEG  181 (312)
Q Consensus       127 ---~dg~i~~wd~~~~~-~~~~~~~--~--~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~  181 (312)
                         ...+|.+|++.... .+.....  +  ....+.+++..++.+++|-.                 ..+.+.-||....
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence               34578888875332 2221111  1  12367888888888877721                 1123444554332


Q ss_pred             ceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCc
Q 021459          182 ACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGK  225 (312)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~  225 (312)
                      +...   . .-....-++++|++++|+++ +..+.|++|++....
T Consensus       199 ~~~~---~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         199 RVVA---E-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEE---E-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEc---C-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            2211   1 12234567899999877666 567899999987554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.66  E-value=0.15  Score=43.02  Aligned_cols=236  Identities=13%  Similarity=0.107  Sum_probs=126.6

Q ss_pred             EEEEEeCCCeEEEEeCCCcceEEEeeeccC---CEEEEEEcc--CCCeEEEEcC------CCeEEEEeCCCCceeeeeee
Q 021459           36 LLASASLDKTVIIWSASSLALVHRFVGHSE---GISDLAWSS--DSHYICSASD------DRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        36 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~  104 (312)
                      .++.+..|+.+.-.|..+++.+.+......   .+. +.-.|  -+..+++++.      .|.|..+|.+++...-+...
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            456667788888889999988765442111   111 00011  1334444432      46788899888644322110


Q ss_pred             c------------------------------ccccE-EEEEEecCCCEEEEeec-------------------CCcEEEE
Q 021459          105 G------------------------------HSDFV-FCVNFNPQSNLIVSGSF-------------------DESIRIW  134 (312)
Q Consensus       105 ~------------------------------~~~~v-~~~~~~~~~~~l~s~~~-------------------dg~i~~w  134 (312)
                      .                              ....+ ...++.++...++.+..                   ...|.-.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl  288 (573)
T d1kb0a2         209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL  288 (573)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence            0                              00111 12455666555543321                   1245566


Q ss_pred             EcCCCeEEEEeeecCc---------CeEEEEEccCC---CEEEEeeCCCeEEEEeCCCCceeeEcccCCCC---------
Q 021459          135 EVKTGKCTRVIRAHSM---------PVTSVHFNRDG---SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP---------  193 (312)
Q Consensus       135 d~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------  193 (312)
                      |+++++..-.++....         +........++   ..++.++.+|.+.++|..+++.+.........         
T Consensus       289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~  368 (573)
T d1kb0a2         289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG  368 (573)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred             cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccccc
Confidence            7788876655443221         11222222333   35778889999999999888765432110000         


Q ss_pred             -------------------------cEEEEEECCCCCEEEEEecC-----------------------------------
Q 021459          194 -------------------------AVSFAKFSPNGKFILVGTLD-----------------------------------  213 (312)
Q Consensus       194 -------------------------~~~~~~~~~~~~~l~~~~~d-----------------------------------  213 (312)
                                               .-...+++|+...+.+...+                                   
T Consensus       369 ~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  448 (573)
T d1kb0a2         369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA  448 (573)
T ss_dssp             CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred             ceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccccc
Confidence                                     00112466666655553322                                   


Q ss_pred             --------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          214 --------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       214 --------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                              |.+.-||+.+++.+-.+..........   . ...+.++++|+.||.++.+|.++++.+-+++
T Consensus       449 ~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~---l-stagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         449 EPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT---L-TTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             SCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE---E-EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCCCcccEEEeCCCCCceEeeecCCCCCCCce---E-EEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence                    346667777777665443322111101   1 1246788889999999999999999885543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.65  E-value=0.12  Score=41.84  Aligned_cols=245  Identities=15%  Similarity=0.142  Sum_probs=122.1

Q ss_pred             cccceEEEEECCCCCEEEEE-e----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC----------
Q 021459           21 HSRAVSCVKFSNDGTLLASA-S----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD----------   85 (312)
Q Consensus        21 h~~~v~~~~~s~~~~~l~t~-~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   85 (312)
                      +.-.+...++||+++++|.+ +    .-..++++|+.+++.+...... .....++|.+|++.|+-...+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            33445567889999988743 2    2347899999999876432211 112468899999877643322          


Q ss_pred             ------CeEEEEeCCCCceee-eeeec--ccccEEEEEEecCCCEEEEeec---CCcEEEE--EcCCCeE--------EE
Q 021459           86 ------RTLRIWDARTPFDCL-KTLRG--HSDFVFCVNFNPQSNLIVSGSF---DESIRIW--EVKTGKC--------TR  143 (312)
Q Consensus        86 ------~~v~~wd~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~s~~~---dg~i~~w--d~~~~~~--------~~  143 (312)
                            ..|..+.+.++...- .....  ....+..+..++++++++....   .+...+|  |+.....        ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777776643221 11222  2234666778889888654322   3334444  5433211        11


Q ss_pred             EeeecCcCeEEEEEccCCCEEEEee---CCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEe-cCC--e
Q 021459          144 VIRAHSMPVTSVHFNRDGSLIVSGS---HDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDS--T  215 (312)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~  215 (312)
                      ..........-+. +.++.+++...   .++.+...++.....  -..+.......+....+...+.+|+... .++  .
T Consensus       282 ~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            1111112222222 22333333322   235566666654321  1233333333343333444455666554 443  5


Q ss_pred             EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC-cEEEEee---cCCeEEEEECCchh
Q 021459          216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG-KYIVSGS---EDNCVYVWDLQQKT  270 (312)
Q Consensus       216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~~  270 (312)
                      |+++++.++...........   .+.......+. .+.++-+   .=.++.-+|+.+++
T Consensus       361 l~v~~~~~~~~~~~~~~~~~---sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVG---SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSS---EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCcEEEecCCCCc---eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            88899988876554332222   12211112222 2333221   12667778887664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.59  E-value=0.16  Score=42.62  Aligned_cols=239  Identities=14%  Similarity=0.128  Sum_probs=132.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-EEEEEEcc--CCCeEEEEc------CCCeEEEEeCCCCceeeeeee
Q 021459           34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSS--DSHYICSAS------DDRTLRIWDARTPFDCLKTLR  104 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~------~d~~v~~wd~~~~~~~~~~~~  104 (312)
                      +..++.+..++.+.-.|..+++++......... -..+.-.|  .+..++.+.      ..|.|.-+|.+++...-+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            345777788899988899999888766532211 00111111  122333332      236788888887644322111


Q ss_pred             c-----------------------------ccccE-EEEEEecCCCEEEEeec-------------------CCcEEEEE
Q 021459          105 G-----------------------------HSDFV-FCVNFNPQSNLIVSGSF-------------------DESIRIWE  135 (312)
Q Consensus       105 ~-----------------------------~~~~v-~~~~~~~~~~~l~s~~~-------------------dg~i~~wd  135 (312)
                      .                             ....+ ..+++.++.++++.+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                             00111 12456676666543321                   23466678


Q ss_pred             cCCCeEEEEeeecCcCe---------EEEEEccCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCCC-----------
Q 021459          136 VKTGKCTRVIRAHSMPV---------TSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDKD-----------  192 (312)
Q Consensus       136 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------  192 (312)
                      +++++..-.++.....+         .-+....+++   .++.+..+|.+.++|..+++.+........           
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            88998776655432221         1122223443   567788999999999988876543211100           


Q ss_pred             ------------Cc------------EEEEEECCCCCEEEEEec------------------------------------
Q 021459          193 ------------PA------------VSFAKFSPNGKFILVGTL------------------------------------  212 (312)
Q Consensus       193 ------------~~------------~~~~~~~~~~~~l~~~~~------------------------------------  212 (312)
                                  ..            ....+++|+...+.+...                                    
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                        00            012346666666655432                                    


Q ss_pred             CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459          213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD  276 (312)
Q Consensus       213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (312)
                      .|.|.-+|+.+++.+-.+..........   . ...+.+++.|+.||.++.+|..+++.+-+++
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~---l-~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGT---L-STAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCE---E-EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCce---e-EECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            2457778888888765543222111101   1 1235678889999999999999998875543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.089  Score=39.47  Aligned_cols=221  Identities=9%  Similarity=-0.010  Sum_probs=126.3

Q ss_pred             eeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcCC
Q 021459           61 VGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVKT  138 (312)
Q Consensus        61 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~  138 (312)
                      ..+...+..++|.+..+.|+-. ..++.|+..++..... .............++++.-+..|+ +-...+.|.+.++..
T Consensus        32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3344557789999887766655 4557788888765322 222222234567888887666655 444567899999876


Q ss_pred             CeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-ecCC
Q 021459          139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-TLDS  214 (312)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~  214 (312)
                      ......+.........++++|...++.-...   ...|.--++.... ...+....-.....+++++.++.|... ...+
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            5443333333356789999987666654322   2234444443322 222322222344567788777776555 4567


Q ss_pred             eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-CCccceEEEEEc
Q 021459          215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVISVTCH  288 (312)
Q Consensus       215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~  288 (312)
                      .|...|+........+.+.. .+..+.  .  .++.+..+-..++.|...|..+++....+. ........++..
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~-~P~~la--v--~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQ-YPFAVT--S--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCC-SEEEEE--E--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEEEEECCCCCeEEEECCCC-CcEEEE--E--ECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            89999886554433444322 223332  2  245555666677888888887766554432 222333455443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.43  E-value=0.22  Score=42.21  Aligned_cols=151  Identities=18%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCE-EEEEEcc--CCCeEEEEcC------CCeEEEEeCCCCceeeeeeec
Q 021459           35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGI-SDLAWSS--DSHYICSASD------DRTLRIWDARTPFDCLKTLRG  105 (312)
Q Consensus        35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~~  105 (312)
                      .+|+.+..|+.+.-.|..+++++.......... ..+.-.|  .+..++.+..      .|.|+-+|..++...-+....
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            468888899999999999999887764211000 0011111  1344555532      488999999887543221100


Q ss_pred             c------------------------------------cc-cEEEEEEecCCCEEEEeecC----------------CcEE
Q 021459          106 H------------------------------------SD-FVFCVNFNPQSNLIVSGSFD----------------ESIR  132 (312)
Q Consensus       106 ~------------------------------------~~-~v~~~~~~~~~~~l~s~~~d----------------g~i~  132 (312)
                      .                                    .. .-..+++.+..++++.+..+                .+|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                    00 11234566666666554322                3466


Q ss_pred             EEEcCCCeEEEEeeecCc---------CeEEEEE-ccCCC---EEEEeeCCCeEEEEeCCCCceee
Q 021459          133 IWEVKTGKCTRVIRAHSM---------PVTSVHF-NRDGS---LIVSGSHDGTCKIWDAGEGACLK  185 (312)
Q Consensus       133 ~wd~~~~~~~~~~~~~~~---------~v~~~~~-~~~~~---~l~~~~~d~~i~iwd~~~~~~~~  185 (312)
                      -.|+++++..-.++....         ....+.. ..+|+   .++....+|.+.++|..+++.+.
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            779999988766653221         1111221 23443   57778899999999998887653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.36  E-value=0.18  Score=42.40  Aligned_cols=80  Identities=14%  Similarity=0.292  Sum_probs=48.5

Q ss_pred             CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EE
Q 021459          129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FI  207 (312)
Q Consensus       129 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  207 (312)
                      |.|.-+|+.+++..-..... .+...-.+.-.+.++++|+.||.++.+|..+++.+-++.........-+.+..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            45778899998876554422 22222222334567888999999999999999988665433222111223344665 44


Q ss_pred             EE
Q 021459          208 LV  209 (312)
Q Consensus       208 ~~  209 (312)
                      ++
T Consensus       517 ~v  518 (560)
T d1kv9a2         517 AI  518 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.13  E-value=0.31  Score=40.98  Aligned_cols=80  Identities=23%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EE
Q 021459          129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FI  207 (312)
Q Consensus       129 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  207 (312)
                      |.|.-+|+++++..-..... .+..+-...-.+.++++|+.|+.++.+|.++++.+-++.........-+.+..+|+ ++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            35777788888766444321 11111112224557778999999999999999988665433222222223344665 44


Q ss_pred             EE
Q 021459          208 LV  209 (312)
Q Consensus       208 ~~  209 (312)
                      ++
T Consensus       523 ~v  524 (571)
T d2ad6a1         523 GS  524 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            34

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.08  E-value=0.13  Score=43.46  Aligned_cols=80  Identities=23%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EE
Q 021459          129 ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FI  207 (312)
Q Consensus       129 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  207 (312)
                      |.|.-+|+.+++..-....+ .++..-..+..+.++++|+.||.++.+|..+|+.+-++..........+.+..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            67888899999877665533 23332223346668888999999999999999988766543322222234556775 44


Q ss_pred             EE
Q 021459          208 LV  209 (312)
Q Consensus       208 ~~  209 (312)
                      ++
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.21  Score=37.79  Aligned_cols=248  Identities=13%  Similarity=0.176  Sum_probs=138.4

Q ss_pred             CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE
Q 021459           44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV  123 (312)
Q Consensus        44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  123 (312)
                      ..+.+-|+.+.....+-.   -...+.-.+|..+.||--+ ...+.++|+++. +.++...-. ..|.-..|-.+. .|+
T Consensus        45 ~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK-~klks~~~~-e~VvfWkWis~~-~L~  117 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK-SKMKAHTMT-DDVTFWKWISLN-TVA  117 (327)
T ss_dssp             EEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEECS-SCCCEEEESSSS-EEE
T ss_pred             ceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHh-hhhceEEcC-CCcEEEEecCCC-EEE
Confidence            467777877654322211   1122455778888777654 568999999985 445554433 344445665544 443


Q ss_pred             EeecCCcEEEEEcCCC-eEEEEeeecC----cCeEEEEEccCCCEEEEee---C----CCeEEEEeCCCCceeeEcccCC
Q 021459          124 SGSFDESIRIWEVKTG-KCTRVIRAHS----MPVTSVHFNRDGSLIVSGS---H----DGTCKIWDAGEGACLKTLIDDK  191 (312)
Q Consensus       124 s~~~dg~i~~wd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~---~----d~~i~iwd~~~~~~~~~~~~~~  191 (312)
                      -.. +..|+-|+++.. .+.+.+..|.    ..|-.-..++++++++..+   .    .|.+.+|....+..  +....+
T Consensus       118 lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s--Q~ieGh  194 (327)
T d1utca2         118 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGH  194 (327)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EEECCS
T ss_pred             EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC--ccccce
Confidence            333 457999999543 3455555443    4566777788888776533   2    25678888765422  222222


Q ss_pred             CCcEEEEEECCCC-----CEEEEE---ecCCeEEEEEcCCCc---E---EEE---E-EccCCceeEEEEEEEccCCcEEE
Q 021459          192 DPAVSFAKFSPNG-----KFILVG---TLDSTLKLWNYSAGK---F---LKI---Y-TGHTNKKYCITSTFSVTNGKYIV  253 (312)
Q Consensus       192 ~~~~~~~~~~~~~-----~~l~~~---~~d~~i~v~d~~~~~---~---~~~---~-~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
                      .  ..+..+-.+|     +.++.+   ...+.+++.++....   .   .+.   + .........+....+ +.-..+.
T Consensus       195 a--a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-~kygiiy  271 (327)
T d1utca2         195 A--ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVF  271 (327)
T ss_dssp             E--EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-TTTTEEE
T ss_pred             e--eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-ccCCEEE
Confidence            1  2222222221     122222   223578888774421   1   111   1 111122344554444 4455788


Q ss_pred             EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459          254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR  306 (312)
Q Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~  306 (312)
                      .-+.-|.|++||++++..+..-+-..+.|..-+-+....-++...  .++.|.
T Consensus       272 viTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN--r~GqVl  322 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN--RKGQVL  322 (327)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE--TTSEEE
T ss_pred             EEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC--CCCeEE
Confidence            888999999999999988876655566777556555555555555  334444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.25  Score=36.96  Aligned_cols=207  Identities=9%  Similarity=-0.036  Sum_probs=112.7

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEeC
Q 021459           20 AHSRAVSCVKFSNDGTLLASAS-LDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWDA   93 (312)
Q Consensus        20 ~h~~~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd~   93 (312)
                      .....+.++.|++.++.|.-.. .++.|+..++....    ....+......+..+++.+.+..|..+ ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3445677899998887776654 45667666554321    111122223456678888766555544 55678999998


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe-eCC
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG-SHD  170 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  170 (312)
                      ..... .............++.+|...+++...  ..+.|...++............-.....+++.+.++.|.-+ ...
T Consensus       107 ~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         107 KGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             TSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence            76432 222333345567888888666655443  33456666665443333332222446789999876655544 556


Q ss_pred             CeEEEEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEE
Q 021459          171 GTCKIWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       171 ~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~  229 (312)
                      +.|...++............. ......+++.  +..|... ..++.|...+..++.....
T Consensus       186 ~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            788888875433222111111 1122223333  2344433 4556777767666554333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.72  E-value=0.27  Score=41.40  Aligned_cols=59  Identities=19%  Similarity=0.320  Sum_probs=39.9

Q ss_pred             cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEccc
Q 021459          130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLID  189 (312)
Q Consensus       130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (312)
                      .+.-||+.+++.+-..+... +...-..+-.+.++++|+.|+.++.+|..+++.+-++..
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            46677888887765544321 221112233567888899999999999999998866543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.74  E-value=0.78  Score=36.76  Aligned_cols=196  Identities=12%  Similarity=0.105  Sum_probs=100.6

Q ss_pred             EEEEEEecCCCEEEE-eecCC----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC--------------
Q 021459          110 VFCVNFNPQSNLIVS-GSFDE----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD--------------  170 (312)
Q Consensus       110 v~~~~~~~~~~~l~s-~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------  170 (312)
                      +...+++|++++++. -+.+|    .|+++|+.+++.+...- .......++|.+|++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345677999998763 33344    58999999998664221 11223568899999977643322              


Q ss_pred             --CeEEEEeCCCCceeeEc-ccCC--CCcEEEEEECCCCCEEEEEec---CCe--EEEEEcCCCc--------EEEEEEc
Q 021459          171 --GTCKIWDAGEGACLKTL-IDDK--DPAVSFAKFSPNGKFILVGTL---DST--LKLWNYSAGK--------FLKIYTG  232 (312)
Q Consensus       171 --~~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~---d~~--i~v~d~~~~~--------~~~~~~~  232 (312)
                        ..+..+.+.+....... ....  ......+..++++++++....   +..  +.+.|+....        .......
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence              25777777765432222 1211  223455667899998875432   223  4445543321        1222222


Q ss_pred             cCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCchhe--ee-cccCCccceEEEEEcCCCceEEEe-eecCCeeE
Q 021459          233 HTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQKTM--IQ-KLDGHTDSVISVTCHPTENKIASA-GLDGDRTV  305 (312)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~--~~-~~~~h~~~v~~l~~~p~~~~l~~~-~~dgd~~v  305 (312)
                      .......+   . ..++.+++..   +.++.|...++.....  -. .+..+...+..-.+...+.+|+.. -.++...|
T Consensus       286 ~~~~~~~~---~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l  361 (430)
T d1qfma1         286 FEGEYDYV---T-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (430)
T ss_dssp             SSSCEEEE---E-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             cccceEEE---e-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEE
Confidence            11111111   1 1223333332   3457777777764322  12 233344445444444444455544 45566667


Q ss_pred             EEEee
Q 021459          306 RVWVQ  310 (312)
Q Consensus       306 ~iw~~  310 (312)
                      ++++.
T Consensus       362 ~v~~~  366 (430)
T d1qfma1         362 QLHDL  366 (430)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            77654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.05  E-value=2.1  Score=35.86  Aligned_cols=194  Identities=14%  Similarity=0.117  Sum_probs=105.6

Q ss_pred             CCEEEEEeCCCeEEEEeC-CCcceEEEeeeccC----------CE-EEEEEccC----CCeEEEEcCCCeEEEEeCCCCc
Q 021459           34 GTLLASASLDKTVIIWSA-SSLALVHRFVGHSE----------GI-SDLAWSSD----SHYICSASDDRTLRIWDARTPF   97 (312)
Q Consensus        34 ~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~----------~v-~~~~~~~~----~~~l~~~~~d~~v~~wd~~~~~   97 (312)
                      +.+.++.+.++.+...+. .+++.+.++.....          .+ +.+++.++    ..+++.++.|+.|.-.|.+++.
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            333344444566666675 57888776532110          11 23444332    3468888899999999998875


Q ss_pred             eeeeeeec--ccc-cEE-EEEEecCCCEEEEeec------CCcEEEEEcCCCeEEEEeeecC------------------
Q 021459           98 DCLKTLRG--HSD-FVF-CVNFNPQSNLIVSGSF------DESIRIWEVKTGKCTRVIRAHS------------------  149 (312)
Q Consensus        98 ~~~~~~~~--~~~-~v~-~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~------------------  149 (312)
                      .+-....+  +.. .+. ...+  .++.++.+..      .|.|+-+|.++|+.+-.+....                  
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~  220 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             eeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence            54332111  111 111 0011  1345555543      4889999999998875543210                  


Q ss_pred             -------------------cC-eEEEEEccCCCEEEEeeCC----------------CeEEEEeCCCCceeeEcccCC-C
Q 021459          150 -------------------MP-VTSVHFNRDGSLIVSGSHD----------------GTCKIWDAGEGACLKTLIDDK-D  192 (312)
Q Consensus       150 -------------------~~-v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~-~  192 (312)
                                         .. -..+.+.+...++..+..+                ..+.-.|..+++..-.+...+ +
T Consensus       221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D  300 (596)
T d1w6sa_         221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300 (596)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecc
Confidence                               00 1234455655555544322                346667888887654332211 0


Q ss_pred             -------CcEEEEE-ECCCC---CEEEEEecCCeEEEEEcCCCcEEEE
Q 021459          193 -------PAVSFAK-FSPNG---KFILVGTLDSTLKLWNYSAGKFLKI  229 (312)
Q Consensus       193 -------~~~~~~~-~~~~~---~~l~~~~~d~~i~v~d~~~~~~~~~  229 (312)
                             .....+. ...+|   +.++....+|.+.++|..+++.+..
T Consensus       301 ~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence                   1111111 23344   3577788999999999999987754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=2.4  Score=33.21  Aligned_cols=139  Identities=13%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSL---------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA   93 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~   93 (312)
                      ...+-++.++...+++.|+.++ ++|......         ......+..-..|..++|+.+  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            4566789999888999888875 556543210         000111112236888999755  45444 4566788877


Q ss_pred             CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-----ecCcCeEEEEEccCCCEEEEee
Q 021459           94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-----AHSMPVTSVHFNRDGSLIVSGS  168 (312)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~  168 (312)
                      ..... ......-...+..+.++|  +.++....++.+.++++..++......     .-...+.++.|++.|..++++.
T Consensus       113 ~~l~~-~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         113 EELSE-FRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSTTC-EEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ecccc-ccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            65322 222222334567777666  456666778999999998876433221     1134577888888887777764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.48  E-value=2.4  Score=32.83  Aligned_cols=185  Identities=14%  Similarity=0.242  Sum_probs=94.0

Q ss_pred             CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc------cCCCEEEEeeC-C---CeEEEEeCCC-CceeeE
Q 021459          118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN------RDGSLIVSGSH-D---GTCKIWDAGE-GACLKT  186 (312)
Q Consensus       118 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~-d---~~i~iwd~~~-~~~~~~  186 (312)
                      +..+++....++-|++||+. |+.+..+.  ...++.+..-      ....-+++++. +   ..|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44566666677679999986 66666553  2345544432      12223444442 2   3577776542 222222


Q ss_pred             cccCC------CCcEEEEEE--CCC-CC-EEEEEecCCeEEEEEcC---CCc----EEEEEEccCCceeEEEEEEEccCC
Q 021459          187 LIDDK------DPAVSFAKF--SPN-GK-FILVGTLDSTLKLWNYS---AGK----FLKIYTGHTNKKYCITSTFSVTNG  249 (312)
Q Consensus       187 ~~~~~------~~~~~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
                      +....      ...+..+++  ++. +. ++++...+|.+..|.+.   ++.    .++.+......    ..+...+..
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~----EGCVvDde~  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQT----EGMAADDEY  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCE----EEEEEETTT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCcc----ceEEEeCCC
Confidence            21110      011222223  554 44 45666778999888763   222    23344433332    222333445


Q ss_pred             cEEEEeecCCeEEEEECCc-----hheeecccC--CccceEEEEEc--CCCceEEEeeecCCeeEEEEe
Q 021459          250 KYIVSGSEDNCVYVWDLQQ-----KTMIQKLDG--HTDSVISVTCH--PTENKIASAGLDGDRTVRVWV  309 (312)
Q Consensus       250 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~l~~~--p~~~~l~~~~~dgd~~v~iw~  309 (312)
                      ..|..+-++.-|..++...     ...+....+  ..+.+-.|+.-  +++.-++.+|.-|+.+..+|+
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            5777777777676666531     122222222  35567777753  344434444445778888886

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.34  E-value=2.6  Score=33.00  Aligned_cols=96  Identities=13%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459           24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL  103 (312)
Q Consensus        24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~  103 (312)
                      .|..++|+-+  .|+.. .++.+..++............-..++.++.++|.  .++....++.+.++++.+.... ...
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~-~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-QLA  161 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccc-ccc
Confidence            4788899754  45444 4456777777665444444444567888888775  4555667899999998765321 111


Q ss_pred             e-----cccccEEEEEEecCCCEEEEe
Q 021459          104 R-----GHSDFVFCVNFNPQSNLIVSG  125 (312)
Q Consensus       104 ~-----~~~~~v~~~~~~~~~~~l~s~  125 (312)
                      .     .-.+.+.+++|++.+..++++
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEe
Confidence            0     012446677777777666665

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=2.2  Score=31.38  Aligned_cols=184  Identities=14%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             CCCEEEEeec---------CCcEEEEEcCCCeEEEEeeec--CcCeEEEEEccCCCEEEEeeCCCe-----EEEEeCCCC
Q 021459          118 QSNLIVSGSF---------DESIRIWEVKTGKCTRVIRAH--SMPVTSVHFNRDGSLIVSGSHDGT-----CKIWDAGEG  181 (312)
Q Consensus       118 ~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~  181 (312)
                      +++.++.|+.         -..+.+||..+.+....-...  ...-.++.  .+++.++.++.++.     ...+|..+.
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc--cceeeEEecceecccccceeeeeccccC
Confidence            4555666553         135778888776544321111  11111222  25666666654433     344666554


Q ss_pred             ceeeEcccCCC-CcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459          182 ACLKTLIDDKD-PAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG  255 (312)
Q Consensus       182 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  255 (312)
                      ........... ...... .. ++..++.|+.+     ..+..||....+....-. ...........  ..++.+++.|
T Consensus       128 ~~~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~--~~~~~i~i~G  202 (288)
T d1zgka1         128 EWHLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVC--VLHNCIYAAG  202 (288)
T ss_dssp             EEEECCCCSSCCBSCEEE-EE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEE--EETTEEEEEC
T ss_pred             ccccccccccccccceee-ee-eecceEecCcccccccceEEEeeccccccccccc-ccccccccccc--ceeeeEEEec
Confidence            43221111111 111112 22 34455555543     457788877665432211 11111111111  1245666666


Q ss_pred             ecC-----CeEEEEECCchheeec--ccCCccceEEEEEcCCCceEEEeeecCCe---eEEEEee
Q 021459          256 SED-----NCVYVWDLQQKTMIQK--LDGHTDSVISVTCHPTENKIASAGLDGDR---TVRVWVQ  310 (312)
Q Consensus       256 ~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~l~~~~~dgd~---~v~iw~~  310 (312)
                      +.+     .....+|..+.+....  ...-.... +++ ..+++.++.||.++..   .|.+|++
T Consensus       203 G~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         203 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CccccccccceeeeeecceeeecccCccCcccce-EEE-EECCEEEEEecCCCCeecceEEEEEC
Confidence            544     3456677655433221  11111111 222 2367788888766542   3556654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.98  E-value=4.6  Score=33.61  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=44.9

Q ss_pred             CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC----CccceEEEEEcC
Q 021459          214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG----HTDSVISVTCHP  289 (312)
Q Consensus       214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~p  289 (312)
                      |.|.-+|+.+++.+-....+.......   .. ..+.++++|+.||.++.+|..+++.+-+++-    +..+   +.+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~---ls-tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~  538 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGV---LA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQ  538 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCC---EE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccce---eE-EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEE
Confidence            456667777777665444322211101   11 2456777899999999999999998865542    2223   34556


Q ss_pred             CCceE
Q 021459          290 TENKI  294 (312)
Q Consensus       290 ~~~~l  294 (312)
                      +|+++
T Consensus       539 ~G~qY  543 (582)
T d1flga_         539 DGEQY  543 (582)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            77543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=2.8  Score=30.78  Aligned_cols=147  Identities=11%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             CCCEEEEeecCCc-----EEEEEcCCCeEEEEeeecCc-CeEEEEEccCCCEEEEeeCC-----CeEEEEeCCCCceeeE
Q 021459          118 QSNLIVSGSFDES-----IRIWEVKTGKCTRVIRAHSM-PVTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEGACLKT  186 (312)
Q Consensus       118 ~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~  186 (312)
                      +++.++.++.++.     ...+|..+............ .-..+... ++..++.|+.+     ..+..||..+.+....
T Consensus       101 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~  179 (288)
T d1zgka1         101 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI  179 (288)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred             ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccccccc
Confidence            4555555554433     44566666543221111100 01122222 44555666543     3467788776554322


Q ss_pred             cccCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--
Q 021459          187 LIDDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--  259 (312)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--  259 (312)
                      ............ .-.++..++.++.+     .....+|..+.+....-........ ..+..  .++++++.|+.++  
T Consensus       180 ~~~~~~~~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~--~~~~l~v~GG~~~~~  255 (288)
T d1zgka1         180 TAMNTIRSGAGV-CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITV--HQGRIYVLGGYDGHT  255 (288)
T ss_dssp             CCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEECCBCSSC
T ss_pred             cccccccccccc-cceeeeEEEecCccccccccceeeeeecceeeecccCccCcccc-eEEEE--ECCEEEEEecCCCCe
Confidence            111111111111 12245566665544     3466777766654332111111111 11111  3577888876554  


Q ss_pred             ---eEEEEECCch
Q 021459          260 ---CVYVWDLQQK  269 (312)
Q Consensus       260 ---~i~iwd~~~~  269 (312)
                         .|.+||+.+.
T Consensus       256 ~~~~v~~yd~~~~  268 (288)
T d1zgka1         256 FLDSVECYDPDTD  268 (288)
T ss_dssp             BCCEEEEEETTTT
T ss_pred             ecceEEEEECCCC
Confidence               3677888653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.46  E-value=4.3  Score=32.54  Aligned_cols=53  Identities=9%  Similarity=0.173  Sum_probs=37.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE--Eee------eccCCEEEEEEccC
Q 021459           23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH--RFV------GHSEGISDLAWSSD   75 (312)
Q Consensus        23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~~------~~~~~v~~~~~~~~   75 (312)
                      ..-.+++|.|+++++++-...|.|++++..+++...  .+.      .-......|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345599999999999887667999999877664422  111      11246778999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.80  E-value=4  Score=31.31  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=101.7

Q ss_pred             eeeecccccceEEEEECCCCCEEEEEeC------------CCeEEEEeCCCcceE-EEe--eec-----cCCEEEEEE--
Q 021459           15 FKTLTAHSRAVSCVKFSNDGTLLASASL------------DKTVIIWSASSLALV-HRF--VGH-----SEGISDLAW--   72 (312)
Q Consensus        15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~------------d~~i~vw~~~~~~~~-~~~--~~~-----~~~v~~~~~--   72 (312)
                      ++.+.+-...-..+...|+|..+++++.            .|.|.++|+.+.+.. ..+  .+.     .-....+..  
T Consensus        27 C~~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~  106 (340)
T d1v04a_          27 CNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI  106 (340)
T ss_dssp             CEECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEE
T ss_pred             ceEcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEE
Confidence            3445443334556888899987766542            488999998764321 111  111     112233433  


Q ss_pred             ccCCC-eEEEEc---CCCeEEEEeCCCCceeee---eeec-ccccEEEEEEecCCCEEEEeec---------------CC
Q 021459           73 SSDSH-YICSAS---DDRTLRIWDARTPFDCLK---TLRG-HSDFVFCVNFNPQSNLIVSGSF---------------DE  129 (312)
Q Consensus        73 ~~~~~-~l~~~~---~d~~v~~wd~~~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~s~~~---------------dg  129 (312)
                      .++++ +|++..   ...+|.++++......+.   .+.. .......+....++..++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            34555 454442   345678887643322221   2211 1133567777788877777311               12


Q ss_pred             cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCCCeEEEEeCCCCceeeE-cccCCCCcEEEEEECC-CCCE
Q 021459          130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHDGTCKIWDAGEGACLKT-LIDDKDPAVSFAKFSP-NGKF  206 (312)
Q Consensus       130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~  206 (312)
                      .-.+|....++...... .-...+.++++||+++|++ -+..+.|+.|++........ ....-......+.+++ +|.+
T Consensus       187 ~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence            33444444444332222 2234689999999987655 45667899988765432211 1112233345566765 4444


Q ss_pred             EEE
Q 021459          207 ILV  209 (312)
Q Consensus       207 l~~  209 (312)
                      .++
T Consensus       266 wva  268 (340)
T d1v04a_         266 WVG  268 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=84.04  E-value=6.2  Score=28.86  Aligned_cols=219  Identities=11%  Similarity=0.043  Sum_probs=91.5

Q ss_pred             cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-CeEE
Q 021459           64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-GKCT  142 (312)
Q Consensus        64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~  142 (312)
                      ...|..++-.. . +.+... ||.|..|-.....+ +.........+..++-.. ...++ - .|+.+..|.... ++..
T Consensus        25 ~~~i~~va~G~-~-h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G~-~~~~a-l-~dg~v~~wG~~~~gq~~   97 (273)
T d1jtdb_          25 QSGVDAIAGGY-F-HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGN-YHSLA-L-KDGEVIAWGGNEDGQTT   97 (273)
T ss_dssp             SSSEEEEEECS-S-EEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEECS-SEEEE-E-ETTEEEEEECCTTSTTC
T ss_pred             CCCcEEEEccC-C-EEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecCC-Cceee-e-eeeeeeccCCCcceeec
Confidence            34577776522 2 233334 89999996544222 211111223344443322 22222 2 478899997532 2211


Q ss_pred             EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459          143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS  222 (312)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  222 (312)
                       ........+..++....  ..+. -.|+.+..|.......... .......+..+.-  ....+ ....++.++.|-..
T Consensus        98 -~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~-~~~~~~~v~~~~~--~~~~~-~~~~~g~~~~~G~~  169 (273)
T d1jtdb_          98 -VPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTV-PAEAQSGVTALDG--GVYTA-LAVKNGGVIAWGDN  169 (273)
T ss_dssp             -CCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSC-CGGGGSSEEEEEE--CSSEE-EEEETTEEEEEECC
T ss_pred             -cccccccceeEEeeecc--cccc-cccccceecccCCCCceee-eccCCceEEEEec--cceee-eeecccceeEeecc
Confidence             11111223444443222  2222 2578888886433211111 1111122333322  22222 23457788888653


Q ss_pred             CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459          223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD  302 (312)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd  302 (312)
                      .................+.+    .....++ - .||.|+-|=......+..-......|..|+..... .++.  .|  
T Consensus       170 ~~g~~~~~~~~~~~v~~Is~----G~~h~~~-l-~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~--  238 (273)
T d1jtdb_         170 YFGQTTVPAEAQSGVDDVAG----GIFHSLA-L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KN--  238 (273)
T ss_dssp             TTSTTSCCGGGSSSEEEEEE----CSSEEEE-E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ET--
T ss_pred             cCCcccccccccCCccceec----cceeeEE-E-ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--EC--
Confidence            32111110111112222211    1222233 2 38999999654432221111122346677664332 2332  23  


Q ss_pred             eeEEEE
Q 021459          303 RTVRVW  308 (312)
Q Consensus       303 ~~v~iw  308 (312)
                      +.|..|
T Consensus       239 g~v~~W  244 (273)
T d1jtdb_         239 GKVIAW  244 (273)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            477777

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.73  E-value=12  Score=29.79  Aligned_cols=54  Identities=9%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeeee------cccccEEEEEEecC
Q 021459           65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTLR------GHSDFVFCVNFNPQ  118 (312)
Q Consensus        65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~~------~~~~~v~~~~~~~~  118 (312)
                      ...++|+|.|+++++++--.+|.|++++..+... .+..+.      .-.+....++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567999999999888765579999998765422 111111      11245678999985