Citrus Sinensis ID: 021463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMWKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccEEEEEEEcEEEHHHHccccccccccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEEcccccccccccccccccccEEEEEcccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHccccccccccccEcEEEEEEEEccEEEEEEEEEEEccccccccccccccccEEEEEcccEEEEEEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcc
Coil and Loop (DISEMBL)
mgkkrkhteiieptkkddsvteerpkrtllgwkdkieiketeapgvfrnkeKVLVTCSRRINFRYRHLMLNVVSllphckkdnkveaksskgaTLNELVELkscssclffecrkHKDLYLWmakspngpsvKFLVNAVHTMEELKLTGnhlkasrplltfssnfgkDAHWKLIKEMIIQIfgtpkehrkskpyhdhvfVFSIVddhiwfrnyqitvphnesdkvarggldkmtlvevgprfclnpikifggsfggptlyenpfyvspnqIRALEKKNKAGKYAKKVKAKTRRKMhelsnplepdefaDMWKE
Flexible Loop (DISEMBL)
mgkkrkhteiieptkkddsvteerpkrtllgwkdkieiketeapgvfrnkekvLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQItvphnesdkvargGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAlekknkagkyakkvkaktrrkmhelsnplepdefadmwke
Low Complexity Region (SEG)
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEkknkagkyakkvkakTRRKMHELSNPLEPDEFADMWKE
Disordered region (IsUnstruct)
****************************LLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKK***********ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQI******************************************
Disordered Region (DISOPRED)
***K*******************************************RNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEEL*********SRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVP**************MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPN****************************************MWK*
Disordered Region (DISEMBL)
*************************KRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKD********KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNK****************HELSNPLEPDEFADMWKE
Disordered Region (DISPRO)
*********************************************VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNES*******LDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRR*******P*EPDEFA**WKE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDEFADMWKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q3SZZ0	353	Ribosome biogenesis prote	yes	no	0.807	0.713	0.496	9e-70
Q8TDN6	353	Ribosome biogenesis prote	yes	no	0.807	0.713	0.496	1e-69
Q5RAN2	353	Ribosome biogenesis prote	yes	no	0.807	0.713	0.492	4e-69
Q4QQT6	352	Ribosome biogenesis prote	yes	no	0.753	0.667	0.514	4e-69
Q8UVY2	339	Ribosome biogenesis prote	N/A	no	0.791	0.728	0.479	5e-69
Q9DCA5	353	Ribosome biogenesis prote	yes	no	0.807	0.713	0.492	6e-69
Q08235	291	Ribosome biogenesis prote	yes	no	0.830	0.890	0.463	1e-66
Q9HGL6	295	Ribosome biogenesis prote	yes	no	0.810	0.857	0.432	2e-61
Q54JN0	326	Ribosome biogenesis prote	yes	no	0.788	0.754	0.457	6e-61
P34524	352	Ribosome biogenesis prote	yes	no	0.740	0.656	0.467	1e-59

>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1

 Score =  263 bits (673), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 133/268 (49%), Positives = 181/268 (67%), Gaps = 16/268 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279

Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
           K + K  +K+   E    L  D  AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTILPHDPTADVF 307

Required for biogenesis of the 60S ribosomal subunit.
Bos taurus (taxid: 9913)

>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/268 (49%), Positives = 181/268 (67%), Gaps = 16/268 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279

Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
           K + K  +K+   E    L  D  AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTLLPHDPTADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1

 Score =  261 bits (668), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 132/268 (49%), Positives = 180/268 (67%), Gaps = 16/268 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQI  TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYRE 279

Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
           K + K  +K+   E    L  D  AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTLLPHDPTADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Pongo abelii (taxid: 9601)

>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/249 (51%), Positives = 171/249 (68%), Gaps = 14/249 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 53  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 111

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 171

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
               H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 172 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 225

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +
Sbjct: 226 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYRE 278

Query: 285 KVKAKTRRK 293
           K + K  +K
Sbjct: 279 KQQVKDVQK 287

Required for biogenesis of the 60S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 179/265 (67%), Gaps = 18/265 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE+VL+  SR INFR RHLM ++ SL+PH + + K++ K  K   +NE+ E+K+C
Sbjct: 47  GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNC 105

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP GPS KFLV  +HT+ ELK++GN LK SRP+L+F   F
Sbjct: 106 NKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAF 165

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            ++  + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI     E D  
Sbjct: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED-- 219

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A K  +
Sbjct: 220 -------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKE 272

Query: 285 KVKAKTRRKMHELSN----PLEPDE 305
           K + K  +K+ +  +    P++P E
Sbjct: 273 KQQVKEVQKLKKEEDRPVIPVDPTE 297

Required for biogenesis of the 60S ribosomal subunit.

Xenopus laevis (taxid: 8355)

>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=2 SV=3

 Score =  261 bits (666), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 132/268 (49%), Positives = 179/268 (66%), Gaps = 16/268 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
               H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279

Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
           + + K  +K+   E    L  D  AD++
Sbjct: 280 RQQVKDVQKLRKKEPKTILPHDPTADVF 307

Required for biogenesis of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 173/263 (65%), Gaps = 4/263 (1%)

Query: 47  FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
           F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++ K      LNE+ EL +C++
Sbjct: 27  FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 85

Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
            LFFE RKH+DLYLW++K PNGP++KF +  +HTM+EL  TGN LK SRP+L+F   F  
Sbjct: 86  VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145

Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA- 225
             H++LIKE+++  FG P   RKSKP+ DHV  FSIVDD IW R Y+I+  H+  +K   
Sbjct: 146 SPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEY 203

Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKK 285
             G + ++LVE+GPRF +  I I  GSFGGP +YEN  YVSPN +RA  K+  A +   +
Sbjct: 204 EDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSR 263

Query: 286 VKAKTRRKMHELSNPLEPDEFAD 308
            +A   RK+    N L  D  ++
Sbjct: 264 AEAAVERKIKRRENVLAADPLSN 286

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 169/261 (64%), Gaps = 8/261 (3%)

Query: 50  KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
           K+KVLV  SR + +R RHL+ ++VS++PH KKD+K+++K  +   LNEL EL +C++  F
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFF 100

Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
           FE R+ +DLYL +A++PNGP+VKF V  +HTM+EL +TGN LK SRP+L+F   F    H
Sbjct: 101 FESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPH 160

Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
            K++KE++ Q FG PK  R+SKP+ D V   +I D  IWFRNY+I    ++S        
Sbjct: 161 LKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSK------- 213

Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAK 289
           D +TL+E+GPRF +  I I  GSFGGP +Y+N  +VS   +RA  +   A +Y  + ++K
Sbjct: 214 DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAIRNQAAQRYVNRQESK 273

Query: 290 TRRKMHELSNPLEPDEFADMW 310
             R++    N +  D   +++
Sbjct: 274 LERQVRAQQNVIPEDPLDNVF 294

Required for biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1

 Score =  234 bits (597), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/256 (45%), Positives = 165/256 (64%), Gaps = 10/256 (3%)

Query: 50  KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
           K++VL T +R I  +YRHLM +++SL+PH KK++K++ + +  + +NE  E+KSC+  + 
Sbjct: 74  KKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAIL 132

Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
           F+ RK  D +LWMAK+P GP+VKF +  VHT++EL++TGN LK SRP L F  +F  + H
Sbjct: 133 FDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192

Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
            +LIKE+I QI+ TPK H KSKP+ DHVF F   D  IWFRNYQI+    + D +     
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL----- 247

Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAK 289
               L E+GPR  ++  KIF   FGG  LY NP YVSPN  R+  K +KA KY K+   K
Sbjct: 248 ----LTEIGPRMIMHIDKIFSDGFGGSVLYSNPNYVSPNNTRSDHKLSKANKYIKRKYQK 303

Query: 290 TRRKMHELSNPLEPDE 305
            + +  +  + +EP E
Sbjct: 304 GKAEERQKISFIEPSE 319

Required for biogenesis of the 60S ribosomal subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans GN=K12H4.3 PE=3 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 161/246 (65%), Gaps = 15/246 (6%)

Query: 46  VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCS 105
           ++ N+E+VLV CSR  + R R+LM ++  LLPH K D+K++ + S    LNE+ E+K+C+
Sbjct: 58  LWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN-VLNEIAEMKNCT 116

Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
             ++FE RK KD YLWM+    GPS+KFLV+ VHTM+ELK++GN L+ASRP+L+F   F 
Sbjct: 117 KVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFD 176

Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVD-DHIWFRNYQITVPHNESDKV 224
           K    KLIK +++Q  GTP  H +S+P+ DHVF FS+ + D IWFRN+QI    +ES   
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIV---DES--- 230

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
                  + L EVGPRF L  +++F GSF G  LY+NP YVSPN IR   +K +     K
Sbjct: 231 -------LQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRREHRKGQHSYIEK 283

Query: 285 KVKAKT 290
           ++  K 
Sbjct: 284 QLAVKA 289

Required for biogenesis of the 60S ribosomal subunit.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224117214	317	predicted protein [Populus trichocarpa]	0.996	0.981	0.867	1e-159
255577729	312	ribosome biogenesis protein brix, putati	0.993	0.993	0.866	1e-159
224128370	317	predicted protein [Populus trichocarpa]	0.996	0.981	0.864	1e-158
297834412	315	brix domain-containing protein [Arabidop	0.996	0.987	0.850	1e-156
18400776	315	ribosomal RNA processing brix domain-con	0.996	0.987	0.831	1e-154
16648689	315	AT3g15460/MJK13_12 [Arabidopsis thaliana	0.996	0.987	0.828	1e-153
388508922	320	unknown [Lotus japonicus]	0.996	0.971	0.825	1e-152
147801502	316	hypothetical protein VITISV_011736 [Viti	0.996	0.984	0.829	1e-152
225437949	316	PREDICTED: ribosome biogenesis protein B	0.996	0.984	0.829	1e-151
357506041	315	Ribosome biogenesis protein BRX1-like pr	1.0	0.990	0.819	1e-149

>gi|224117214|ref|XP_002317510.1| predicted protein [Populus trichocarpa] gi|222860575|gb|EEE98122.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/318 (86%), Positives = 297/318 (93%), Gaps = 7/318 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEA----PGVFRNKEKVL 54
           MGKKRKH  T++IEP KKD+S TE RPKRTLLGWKDK E KETE+     G FRNKEKVL
Sbjct: 1   MGKKRKHSETQVIEPAKKDESETE-RPKRTLLGWKDKPEEKETESLPPHQGGFRNKEKVL 59

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRIN+RYRHLMLN+VSLLPHCKKD+KVE+ SSKGATLNELVELK+CSS LFFECRK
Sbjct: 60  VTCSRRINYRYRHLMLNLVSLLPHCKKDSKVESTSSKGATLNELVELKNCSSSLFFECRK 119

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLYLWM K P+GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+K
Sbjct: 120 HKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLK 179

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EMIIQIFG PK+HRKSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL
Sbjct: 180 EMIIQIFGIPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTL 239

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKM 294
           VEVGPRFCLNPIKIFGGSFGGPTLYENPF++SPNQIRALEKK KAGK+AKKVKAKTRRKM
Sbjct: 240 VEVGPRFCLNPIKIFGGSFGGPTLYENPFFISPNQIRALEKKQKAGKFAKKVKAKTRRKM 299

Query: 295 HELSNPLEPDEFADMWKE 312
           HELSNPLEPDEFADMWKE
Sbjct: 300 HELSNPLEPDEFADMWKE 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577729|ref|XP_002529740.1| ribosome biogenesis protein brix, putative [Ricinus communis] gi|223530781|gb|EEF32647.1| ribosome biogenesis protein brix, putative [Ricinus communis]

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/314 (86%), Positives = 289/314 (92%), Gaps = 4/314 (1%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCS 58
           MGKKRKH  TE+  P KKD+S  E RPKRTLLGWKDK E+K TE  G FRNKEKVLVTCS
Sbjct: 1   MGKKRKHSETEVAAPEKKDESAAE-RPKRTLLGWKDKSEVKPTETQG-FRNKEKVLVTCS 58

Query: 59  RRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDL 118
           RRIN+RYRHLMLN+VSLLPHCKKDNKVE+KSSKG  LNELVELK  SSCLFFECRKHKDL
Sbjct: 59  RRINYRYRHLMLNIVSLLPHCKKDNKVESKSSKGMALNELVELKGSSSCLFFECRKHKDL 118

Query: 119 YLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMII 178
           YLWMAK P GPSVKFLVNAVHTMEELKLTGNHLK SRP+LTFS+NF KDAHWKL+KEM++
Sbjct: 119 YLWMAKCPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSANFDKDAHWKLLKEMLM 178

Query: 179 QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVG 238
           QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKV RGGLDKMTLVEVG
Sbjct: 179 QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVVRGGLDKMTLVEVG 238

Query: 239 PRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELS 298
           PRFCLNPIKIFGGSFGGPTLYENPFY+SPNQIRALEK+ KAGK+ KKVKAKTRRKMHE+S
Sbjct: 239 PRFCLNPIKIFGGSFGGPTLYENPFYISPNQIRALEKRKKAGKFEKKVKAKTRRKMHEMS 298

Query: 299 NPLEPDEFADMWKE 312
           NPL PDEFADMW+E
Sbjct: 299 NPLVPDEFADMWRE 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128370|ref|XP_002329145.1| predicted protein [Populus trichocarpa] gi|222869814|gb|EEF06945.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/318 (86%), Positives = 295/318 (92%), Gaps = 7/318 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETE----APGVFRNKEKVL 54
           MGKKRKH  T++IEP KKD+   E RPKRTLLGWKDK E+KETE      G FRNKEKVL
Sbjct: 1   MGKKRKHVETQVIEPAKKDEGAPE-RPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVL 59

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRINFRYRHLMLN+VSLLPHCKKD+KVE+ S+KGATLNELVELK+ SS LFFECRK
Sbjct: 60  VTCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRK 119

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLYLWM K P+GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+K
Sbjct: 120 HKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLK 179

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EMIIQIFGTPK+HRKSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL
Sbjct: 180 EMIIQIFGTPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTL 239

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKM 294
           VEVGPRFCLNPIKIFGGSFGGPTLYENPF+VSPNQIRALEKK KAGK+AKKVKAKTRRKM
Sbjct: 240 VEVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKM 299

Query: 295 HELSNPLEPDEFADMWKE 312
           HELSNPLEPDEFADMWKE
Sbjct: 300 HELSNPLEPDEFADMWKE 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834412|ref|XP_002885088.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330928|gb|EFH61347.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/315 (85%), Positives = 287/315 (91%), Gaps = 4/315 (1%)

Query: 1   MGKKRKHTEIIE--PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG-VFRNKEKVLVTC 57
           MG+KRKH+E +   P KKDDS  E RPKRTLLGWKDK E  E   P  VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVAAAPVKKDDSAPE-RPKRTLLGWKDKNEDAEDSKPASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRI+FRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRISFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF KDAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHEL 297
           GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHEL
Sbjct: 240 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHEL 299

Query: 298 SNPLEPDEFADMWKE 312
           SNPLEP EF DMWK+
Sbjct: 300 SNPLEPGEFTDMWKD 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400776|ref|NP_566514.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana] gi|7021731|gb|AAF35412.1| unknown protein [Arabidopsis thaliana] gi|15795111|dbj|BAB02375.1| unnamed protein product [Arabidopsis thaliana] gi|21592419|gb|AAM64370.1| unknown [Arabidopsis thaliana] gi|332642158|gb|AEE75679.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/315 (83%), Positives = 281/315 (89%), Gaps = 4/315 (1%)

Query: 1   MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
           MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHEL 297
           GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHEL
Sbjct: 240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHEL 299

Query: 298 SNPLEPDEFADMWKE 312
           SNPLEPDEF DMW +
Sbjct: 300 SNPLEPDEFTDMWND 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16648689|gb|AAL25537.1| AT3g15460/MJK13_12 [Arabidopsis thaliana] gi|23505881|gb|AAN28800.1| At3g15460/MJK13_12 [Arabidopsis thaliana]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/315 (82%), Positives = 281/315 (89%), Gaps = 4/315 (1%)

Query: 1   MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
           MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELK+TGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKVTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHEL 297
           GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQIRALEK+NKAGK+AKK+KAKTRRKMHEL
Sbjct: 240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHEL 299

Query: 298 SNPLEPDEFADMWKE 312
           SNPLEPDEF DMW +
Sbjct: 300 SNPLEPDEFTDMWND 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508922|gb|AFK42527.1| unknown [Lotus japonicus]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/321 (82%), Positives = 288/321 (89%), Gaps = 10/321 (3%)

Query: 1   MGKKRKHTEIIE---PTKKDDSVTEERPKRTLLGWKDK------IEIKETEAPGVFRNKE 51
           M KKRK +E  +   P KKDD V  ERP RTLLGWKDK       E+ E     VFRNKE
Sbjct: 1   MAKKRKRSEAAQAVVPPKKDD-VVPERPARTLLGWKDKNVVNQDDEVNENGHSPVFRNKE 59

Query: 52  KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFE 111
           KVLVTCSRRI +RYRHLMLNVVSLLPHCKKDNKVE+K +KGATLNELVELK+CSSCLFFE
Sbjct: 60  KVLVTCSRRIIYRYRHLMLNVVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFE 119

Query: 112 CRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWK 171
           CRK KDL+LWM+K PNGPSVKFLV+AVHTMEELKLTGNHLKASRPLLTFS+NF KDAHWK
Sbjct: 120 CRKAKDLFLWMSKCPNGPSVKFLVSAVHTMEELKLTGNHLKASRPLLTFSTNFEKDAHWK 179

Query: 172 LIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDK 231
           L+KEM++QIF TPK+HRKSKP+HDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RGGLDK
Sbjct: 180 LLKEMLLQIFETPKDHRKSKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDK 239

Query: 232 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTR 291
           MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEK+ KAGK+AKKVKAKTR
Sbjct: 240 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRKKAGKFAKKVKAKTR 299

Query: 292 RKMHELSNPLEPDEFADMWKE 312
           RKMHE++NPLEPDEFADMWK+
Sbjct: 300 RKMHEMANPLEPDEFADMWKD 320

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801502|emb|CAN61504.1| hypothetical protein VITISV_011736 [Vitis vinifera]

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/317 (82%), Positives = 286/317 (90%), Gaps = 6/317 (1%)

Query: 1   MGKKRKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKI--EIKETEAPG-VFRNKEKVLV 55
           MGKKRKH+E  + EP KKD S   ERPKRTLLGWKD    E KETE+   +FRNKEKVLV
Sbjct: 1   MGKKRKHSEANVAEPPKKD-SDAPERPKRTLLGWKDPTPTETKETESSSPIFRNKEKVLV 59

Query: 56  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKH 115
           TCSRRI++RYRHLML++VSLLPH KKDNKVE+K SKGATLNELVELK+CSSCLFFECRK 
Sbjct: 60  TCSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQ 119

Query: 116 KDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKE 175
           KDLYLWMAK P+GPSVKF+V+AVHTMEELKLTGNHLK SRPLLTFS+NF KD HWKL+KE
Sbjct: 120 KDLYLWMAKCPSGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKE 179

Query: 176 MIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLV 235
           MI QIFGTPKEHRK+KPYHDHVF FS+ DDHIWFRNYQI+VPHNESDKV RGGLDK+TLV
Sbjct: 180 MITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLV 239

Query: 236 EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH 295
           EVGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN+IRAL+K+  AGKYAKKVKAKTRRKMH
Sbjct: 240 EVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRALKKRKAAGKYAKKVKAKTRRKMH 299

Query: 296 ELSNPLEPDEFADMWKE 312
           EL NPLE DEFADMWKE
Sbjct: 300 ELENPLEADEFADMWKE 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437949|ref|XP_002270029.1| PREDICTED: ribosome biogenesis protein BRX1 homolog [Vitis vinifera] gi|297744237|emb|CBI37207.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/317 (82%), Positives = 285/317 (89%), Gaps = 6/317 (1%)

Query: 1   MGKKRKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKI--EIKETEAPG-VFRNKEKVLV 55
           MGKKRKH+E  + EP KKD S   ERPKRTLLGWKD    E KE E+   +FRNKEKVLV
Sbjct: 1   MGKKRKHSEANVAEPPKKD-SDAPERPKRTLLGWKDPTPTETKEIESSSPIFRNKEKVLV 59

Query: 56  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKH 115
           TCSRRI++RYRHLML++VSLLPH KKDNKVE+K SKGATLNELVELK+CSSCLFFECRK 
Sbjct: 60  TCSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQ 119

Query: 116 KDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKE 175
           KDLYLWMAK PNGPSVKF+V+AVHTMEELKLTGNHLK SRPLLTFS+NF KD HWKL+KE
Sbjct: 120 KDLYLWMAKCPNGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKE 179

Query: 176 MIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLV 235
           MI QIFGTPKEHRK+KPYHDHVF FS+ DDHIWFRNYQI+VPHNESDKV RGGLDK+TLV
Sbjct: 180 MITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLV 239

Query: 236 EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMH 295
           EVGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN+IRAL+K+  AGKYAKKVKAKTRRKMH
Sbjct: 240 EVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRALKKRKAAGKYAKKVKAKTRRKMH 299

Query: 296 ELSNPLEPDEFADMWKE 312
           EL NPLE DEFADMWKE
Sbjct: 300 ELENPLEADEFADMWKE 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506041|ref|XP_003623309.1| Ribosome biogenesis protein BRX1-like protein [Medicago truncatula] gi|355498324|gb|AES79527.1| Ribosome biogenesis protein BRX1-like protein [Medicago truncatula]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/315 (81%), Positives = 281/315 (89%), Gaps = 3/315 (0%)

Query: 1   MGK-KRKHTEIIEPTKKDDSVTEERPKRTLLGWKDK--IEIKETEAPGVFRNKEKVLVTC 57
           MGK KR      E   K + V  ERP RTLLGWKDK  IE K+  A  VFRNKEKVLVTC
Sbjct: 1   MGKRKRSEKAEAEAVPKKEDVAPERPVRTLLGWKDKNEIEAKDNAASPVFRNKEKVLVTC 60

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRI +RYRHLMLN+VSLLPHCKKDNKVE+K +KGATLNELVELK+CSSCLFFECRK KD
Sbjct: 61  SRRIVYRYRHLMLNLVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKD 120

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LYLWMAK PNGPSVKFLV+AVHTMEELKLTGNHLK SRPLLTFSSNF KDA+WKL+KEM+
Sbjct: 121 LYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAYWKLLKEML 180

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
           +QIF TPK+HRK+KP+HDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ RG LDKMTL+EV
Sbjct: 181 LQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEV 240

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHEL 297
           GPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRAL+KK KAG +AKKVKAKTRRKMHE+
Sbjct: 241 GPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALQKKKKAGTFAKKVKAKTRRKMHEM 300

Query: 298 SNPLEPDEFADMWKE 312
           +NPLEPDEFADMWK+
Sbjct: 301 ANPLEPDEFADMWKD 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2090131	315	AT3G15460 "AT3G15460" [Arabido	0.996	0.987	0.793	4.1e-136
TAIR|locus:2011486	320	AT1G52930 [Arabidopsis thalian	1.0	0.975	0.776	6.7e-136
UNIPROTKB|F1NSS7	349	BRIX1 "Uncharacterized protein	0.724	0.647	0.525	1.6e-63
UNIPROTKB|F1SND4	353	BRIX1 "Uncharacterized protein	0.798	0.705	0.492	1.6e-63
UNIPROTKB|Q8TDN6	353	BRIX1 "Ribosome biogenesis pro	0.798	0.705	0.496	2.6e-63
UNIPROTKB|Q3SZZ0	353	BRIX1 "Ribosome biogenesis pro	0.762	0.674	0.505	1.1e-62
MGI|MGI:1915082	353	Brix1 "BRX1, biogenesis of rib	0.791	0.699	0.488	3.8e-62
RGD|1308508	352	Brix1 "BRX1, biogenesis of rib	0.788	0.698	0.488	4.8e-62
CGD|CAL0003537	292	CSI2 [Candida albicans (taxid:	0.862	0.921	0.443	7.1e-61
UNIPROTKB|Q5A3N8	292	CSI2 "Likely nucleolar ribosom	0.862	0.921	0.443	7.1e-61

TAIR|locus:2090131 AT3G15460 "AT3G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 250/315 (79%), Positives = 266/315 (84%)

Query:     1 MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
             MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct:     1 MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query:    58 SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
             SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct:    60 SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query:   118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
             LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct:   120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query:   178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
              QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct:   180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query:   238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKMHEL 297
             GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQIRALE               TRRKMHEL
Sbjct:   240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHEL 299

Query:   298 SNPLEPDEFADMWKE 312
             SNPLEPDEF DMW +
Sbjct:   300 SNPLEPDEFTDMWND 314

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2011486 AT1G52930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
 Identities = 247/318 (77%), Positives = 271/318 (85%)

Query:     1 MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGV----FRNKEKVL 54
             MG+KRKH  TE   P KK D    +RPKRTLLGWKDK E +  +A  +    F+NKEKVL
Sbjct:     1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query:    55 VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
             VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVEAKSSKGATLNEL+ELK+ +SCLFFECRK
Sbjct:    61 VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query:   115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
             HKDLY+WM KSPNGPSVKFLV AVH MEE+KLTGNHLK SRPLLTFSSNF KDAHWKL+K
Sbjct:   121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query:   175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
             EM+ Q+FG PKEHRKSKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL
Sbjct:   181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query:   235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEXXXXXXXXXXXXXXXTRRKM 294
             +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALE               TR+KM
Sbjct:   241 IEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKIKAKTRKKM 300

Query:   295 HELSNPLEPDEFADMWKE 312
             HELSNPLEPDEFADMWK+
Sbjct:   301 HELSNPLEPDEFADMWKD 318

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

UNIPROTKB|F1NSS7 BRIX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 126/240 (52%), Positives = 166/240 (69%)

Query:    34 DKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGA 93
             ++  I    + G ++NKE+VL+  SR INFR RHLM ++ +L+PH K D K++ K  K  
Sbjct:    41 EEYSIPAPVSQGKWKNKERVLIFSSRGINFRTRHLMQDLRTLMPHSKADTKMDRKD-KLF 99

Query:    94 TLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKA 153
              +NE+ E+K+C+ C+FFE +K +DLY+W++ +P GPS KFLV  +HT+ ELK+TGN L+ 
Sbjct:   100 VINEVCEMKNCNKCIFFEAKKKQDLYMWLSNTPQGPSAKFLVQNIHTLAELKMTGNCLRG 159

Query:   154 SRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQ 213
             SRPLL+F   F K+ H+ L+KE+ IQIF TP+ H KS+P+ DHVF F+I D  IWFRNYQ
Sbjct:   160 SRPLLSFDPTFDKEPHYALLKELFIQIFSTPQYHPKSQPFVDHVFTFTITDKRIWFRNYQ 219

Query:   214 ITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAL 273
             I     E D          +LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R L
Sbjct:   220 II----EEDA---------SLVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRL 266

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1SND4 BRIX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 133/270 (49%), Positives = 178/270 (65%)

Query:     3 KKRKHTEI-IEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRI 61
             KK K +E   +P  K   V EE  +      +D+  I      G ++NKE++L+  SR I
Sbjct:    17 KKLKRSEKDAKPPAKSSEVAEEAEE------EDRNRIPGPVCKGKWKNKERILIFSSRGI 70

Query:    62 NFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLW 121
             NFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W
Sbjct:    71 NFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129

Query:   122 MAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181
             ++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF
Sbjct:   130 LSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIF 189

Query:   182 GTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRF 241
              TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF
Sbjct:   190 STPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRF 236

Query:   242 CLNPIKIFGGSFGGPTLYENPFYVSPNQIR 271
              LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:   237 VLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8TDN6 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Homo sapiens (taxid:9606)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 134/270 (49%), Positives = 178/270 (65%)

Query:     3 KKRKHTEI-IEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRI 61
             KK K  EI  EP  K  +  EE  +      +D+I        G ++NKE++L+  SR I
Sbjct:    17 KKPKRNEIDAEPPAKRHATAEEVEEEE----RDRIP--GPVCKGKWKNKERILIFSSRGI 70

Query:    62 NFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLW 121
             NFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W
Sbjct:    71 NFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129

Query:   122 MAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181
             ++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF
Sbjct:   130 LSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIF 189

Query:   182 GTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRF 241
              TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF
Sbjct:   190 STPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRF 236

Query:   242 CLNPIKIFGGSFGGPTLYENPFYVSPNQIR 271
              LN IKIF GSFGGPTLYENP Y SPN  R
Sbjct:   237 VLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q3SZZ0 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Bos taurus (taxid:9913)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 131/259 (50%), Positives = 175/259 (67%)

Query:    13 PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNV 72
             P K +D V+EE  +      KD+I        G ++NKE++L+  SR INFR RHLM ++
Sbjct:    29 PAKAND-VSEEAAEEE----KDRIP--GPVCKGKWKNKERILIFSSRGINFRTRHLMQDL 81

Query:    73 VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132
               L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS K
Sbjct:    82 RMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAK 140

Query:   133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKP 192
             FLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P
Sbjct:   141 FLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQP 200

Query:   193 YHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS 252
             + DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GS
Sbjct:   201 FVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKIFQGS 247

Query:   253 FGGPTLYENPFYVSPNQIR 271
             FGGPTLYENP Y SPN  R
Sbjct:   248 FGGPTLYENPHYQSPNMHR 266

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1915082 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 131/268 (48%), Positives = 176/268 (65%)

Query:     4 KRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINF 63
             KR   +  +P K+ D V +E  +      +D+I        G ++NKE++L+  SR INF
Sbjct:    20 KRSSKDAGQPAKQAD-VAKEAEEEN----RDRIP--GPVCKGKWKNKERILIFSSRGINF 72

Query:    64 RYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123
             R RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++
Sbjct:    73 RTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLS 131

Query:   124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGT 183
              SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF T
Sbjct:   132 NSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFST 191

Query:   184 PKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
             P+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF L
Sbjct:   192 PRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVL 238

Query:   244 NPIKIFGGSFGGPTLYENPFYVSPNQIR 271
             N IKIF GSFGGPTLYENP Y SPN  R
Sbjct:   239 NLIKIFQGSFGGPTLYENPHYQSPNMHR 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1308508 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 131/268 (48%), Positives = 176/268 (65%)

Query:     4 KRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINF 63
             K+   +  +P K+ D V +E  +      KD+I        G ++NKE++L+  SR INF
Sbjct:    20 KKNRKDAGQPAKQAD-VAKEAEEE-----KDRIP--GPVCKGKWKNKERILIFSSRGINF 71

Query:    64 RYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123
             R RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++
Sbjct:    72 RTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLS 130

Query:   124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGT 183
              SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF T
Sbjct:   131 NSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFST 190

Query:   184 PKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
             P+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF L
Sbjct:   191 PRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVL 237

Query:   244 NPIKIFGGSFGGPTLYENPFYVSPNQIR 271
             N IKIF GSFGGPTLYENP Y SPN  R
Sbjct:   238 NLIKIFQGSFGGPTLYENPHYQSPNMHR 265

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

CGD|CAL0003537 CSI2 [Candida albicans (taxid:5476)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/275 (44%), Positives = 176/275 (64%)

Query:    39 KETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNEL 98
             KET       N++++LV  SR I +R+RHL+ ++++LLPH +K+ K ++K +    LNE+
Sbjct:    14 KETSEKTKHINRQRLLVISSRGITYRHRHLIQDLLALLPHARKEPKFDSKKNLHQ-LNEV 72

Query:    99 VELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLL 158
              EL +C++  FFECRKH+DLYLW++K PNGP++KF +  +HT++EL  TGN LK SRP+L
Sbjct:    73 AELYNCNNIFFFECRKHQDLYLWISKPPNGPTLKFHIQNLHTLDELNFTGNCLKGSRPIL 132

Query:   159 TFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI--TV 216
             +F  +F ++ H+KL+KEM +Q FG P   RKSKP+ DHV  FSIVD  IW RNYQI  T+
Sbjct:   133 SFDKSFLENDHYKLLKEMFLQTFGVPPNARKSKPFIDHVMTFSIVDGKIWIRNYQINETL 192

Query:   217 PHNESDKVARG---GLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAL 273
                E+DK+       +D++ LVE+GPR  L  I +  GSF GP +YEN  YVSPN +RA 
Sbjct:   193 DVKENDKIEDDEDYDVDQLNLVEIGPRLVLTLITVLEGSFSGPKIYENKQYVSPNFVRAQ 252

Query:   274 EXXXXXXXXXXXXXXXTRRKMHELSNPLEPDEFAD 308
                               RK+ + +  L+ D  ++
Sbjct:   253 LKQQAADQAKSRSQAALERKIKKRNQVLKADPLSN 287

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0042134 "rRNA primary transcript binding" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q5A3N8 CSI2 "Likely nucleolar ribosomal biogenesis factor BRX1p" [Candida albicans SC5314 (taxid:237561)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/275 (44%), Positives = 176/275 (64%)

Query:    39 KETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNEL 98
             KET       N++++LV  SR I +R+RHL+ ++++LLPH +K+ K ++K +    LNE+
Sbjct:    14 KETSEKTKHINRQRLLVISSRGITYRHRHLIQDLLALLPHARKEPKFDSKKNLHQ-LNEV 72

Query:    99 VELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLL 158
              EL +C++  FFECRKH+DLYLW++K PNGP++KF +  +HT++EL  TGN LK SRP+L
Sbjct:    73 AELYNCNNIFFFECRKHQDLYLWISKPPNGPTLKFHIQNLHTLDELNFTGNCLKGSRPIL 132

Query:   159 TFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI--TV 216
             +F  +F ++ H+KL+KEM +Q FG P   RKSKP+ DHV  FSIVD  IW RNYQI  T+
Sbjct:   133 SFDKSFLENDHYKLLKEMFLQTFGVPPNARKSKPFIDHVMTFSIVDGKIWIRNYQINETL 192

Query:   217 PHNESDKVARG---GLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAL 273
                E+DK+       +D++ LVE+GPR  L  I +  GSF GP +YEN  YVSPN +RA 
Sbjct:   193 DVKENDKIEDDEDYDVDQLNLVEIGPRLVLTLITVLEGSFSGPKIYENKQYVSPNFVRAQ 252

Query:   274 EXXXXXXXXXXXXXXXTRRKMHELSNPLEPDEFAD 308
                               RK+ + +  L+ D  ++
Sbjct:   253 LKQQAADQAKSRSQAALERKIKKRNQVLKADPLSN 287

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08235	BRX1_YEAST	No assigned EC number	0.4638	0.8301	0.8900	yes	no
Q9HGL6	BRX1_SCHPO	No assigned EC number	0.4329	0.8108	0.8576	yes	no
Q4QQT6	BRX1_RAT	No assigned EC number	0.5140	0.7532	0.6676	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110946	hypothetical protein (317 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.761
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.744
	gw1.86.17.1	hypothetical protein (573 aa)				•	•		•		0.709
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.699
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.640
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)				•	•		•		0.626
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.616
	grail3.0106016302	hypothetical protein (217 aa)				•	•		•		0.614
	fgenesh4_pg.C_LG_X000306	hypothetical protein (187 aa)				•	•				0.606
	eugene3.00090493	hypothetical protein (840 aa)				•	•				0.606

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
COG5154	283	COG5154, BRX1, RNA-binding protein required for 60	5e-79
pfam04427	176	pfam04427, Brix, Brix domain	9e-48
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	3e-41

>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  241 bits (617), Expect = 5e-79
 Identities = 108/265 (40%), Positives = 156/265 (58%), Gaps = 8/265 (3%)

Query: 47  FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
           F  K+  L+  SR +++R RHLM ++  L+PH KK+ K++ K + G  LNEL EL +C++
Sbjct: 27  FVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNN 85

Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
            LFFE RK  DLYL  A+ PNGP+VKF ++ +HTM+EL  TGN LK SRP+L+F   F  
Sbjct: 86  MLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFED 145

Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVAR 226
             H K  KE++  IFG PK  R+SKP+ D V  F I+D  IW R Y+I   + +  K   
Sbjct: 146 IPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSK--- 202

Query: 227 GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKV 286
                + L E+GPRF +  IKI  GSFGGP +Y+N  +VS   +RA  +   A     + 
Sbjct: 203 ----DVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLFARK 258

Query: 287 KAKTRRKMHELSNPLEPDEFADMWK 311
           ++   R++    N +  D   +++ 
Sbjct: 259 ESNLERQVRAQQNVIPEDPLDNVFA 283

Length = 283

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  157 bits (400), Expect = 9e-48
 Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 18/194 (9%)

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           +T SR+ + R R L  ++  L P+ KK N+ + K      L E    K  +S L F   K
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKD---LLEFAGEKGDTSLLVFGEHK 57

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
            K L L + + PNGP+++F ++ V  ++++K  G   K SRPLL F+  F      KLIK
Sbjct: 58  -KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIK 116

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           E++  +F  P  H+      D V  FS   D I+FR+Y+                 K+ L
Sbjct: 117 ELLQDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRYK--------------KKVEL 162

Query: 235 VEVGPRFCLNPIKI 248
            E+GPRF L   +I
Sbjct: 163 QEIGPRFTLKLRRI 176

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  141 bits (357), Expect = 3e-41
 Identities = 67/194 (34%), Positives = 96/194 (49%), Gaps = 18/194 (9%)

Query: 54  LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFEC 112
           L+T SR+ + R R L  ++  L P   K N+     +K   L E    K +    + FE 
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINR---GKNKLNELLEFASEKGNTDLLVVFES 57

Query: 113 RKHK-DLYLWMAKSPNGPSVKFLVNAVHTMEELK--LTGNHLKASRPLLTFSSNFGKDAH 169
                 L L + + PNGP++ F +  V   +ELK   TGN L  SRPLL F++ F +   
Sbjct: 58  SSKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGK 117

Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
             LIKE+   +F  P EH+KS P    V  FS  DD+I+FR+Y+I     +         
Sbjct: 118 --LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKP-------- 167

Query: 230 DKMTLVEVGPRFCL 243
            ++ L E+GPRF L
Sbjct: 168 -RVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
KOG3031	307	consensus Protein required for biogenesis of the r	100.0
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	99.87
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.8
PRK03972	208	ribosomal biogenesis protein; Validated	99.72
PRK00933	165	ribosomal biogenesis protein; Validated	97.74

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-85  Score=597.04  Aligned_cols=293  Identities=62%  Similarity=0.991  Sum_probs=267.2

Q ss_pred             CCcc--ccccc--ccCCCCCCCCCCcCCccccccCCCcccccccccCCCccccCCeEEEEccCCCCHHHHHHHHHHHhcC
Q 021463            1 MGKK--RKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL   76 (312)
Q Consensus         1 ~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll   76 (312)
                      ||++  +|+++  ..++.++.+..+|++|.|+. ...++..++    ++.|.|+++|||++|||++.++||||+||..||
T Consensus         1 Mg~~~k~k~~~~~~~~~~~~~~e~~~~~pqr~~-~~~~~~~pk----~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll   75 (299)
T KOG2971|consen    1 MGRKYKRKKSETAPKAEDKKSEENAPEPPQRNL-EESDDFVPK----KEKWKNKERVLVLSSRGISFRTRHLMKDISSLL   75 (299)
T ss_pred             CcchhhhhhccccCcccccchhccCCCCCcccc-ccccccccc----ccccccceeEEEEecCCchHHHHHHHHHHHHhc
Confidence            7877  67777  33334444444789998881 111222333    677999999999999999999999999999999


Q ss_pred             CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEEEEEeeeEehHHHhhhCCCCCCCCC
Q 021463           77 PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRP  156 (312)
Q Consensus        77 P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~F~V~n~~t~~elk~~gn~~k~srP  156 (312)
                      ||++.++|++++.++. .|+++|++++|+.||||+++|++|+||||+++|+|||++|.|+|+|||+|++++|||++||||
T Consensus        76 ph~k~dsk~d~~k~l~-~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrp  154 (299)
T KOG2971|consen   76 PHSKKDSKLDRKKKLG-VLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTGNCLKGSRP  154 (299)
T ss_pred             ccccccchhhhcchHH-HHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCccccccCCcc
Confidence            9999999999888886 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEEEEEEeeeccCCCCcccccCCCcceEEEE
Q 021463          157 LLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVE  236 (312)
Q Consensus       157 lLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~E  236 (312)
                      +|+||.+|++.|||+++|+||+++|++|.+|++|+||+|||++|++.||+||||+|||...            +.+.|+|
T Consensus       155 lLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~------------ed~~L~E  222 (299)
T KOG2971|consen  155 LLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE------------EDKTLIE  222 (299)
T ss_pred             eeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc------------cCcceee
Confidence            9999999999999999999999999999999999999999999999999999999999621            2479999


Q ss_pred             eccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcCCCCCCCh-hhhcccC
Q 021463          237 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE-FADMWKE  312 (312)
Q Consensus       237 IGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  312 (312)
                      |||||+|++++|++|+|+|++||+|+.|||||++|+.+++.+|.+| +|++++.+|+.|+.++.+++|+ ++++|++
T Consensus       223 iGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~~l~~d~vf~~~~~~  298 (299)
T KOG2971|consen  223 IGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALENVLEEDPVFADMAKD  298 (299)
T ss_pred             eccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcCCCCCCchhhhhhcc
Confidence            9999999999999999999999999999999999999999999999 9999999999999999999999 7888863

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-71  Score=494.18  Aligned_cols=260  Identities=41%  Similarity=0.739  Sum_probs=249.3

Q ss_pred             CCccccCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEE
Q 021463           44 PGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA  123 (312)
Q Consensus        44 ~~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~  123 (312)
                      ...|-|+|++||++|||++.+.||||+||..|+||++++.|++.+.++. +|+++|+.++|++++||+++|+.++|||++
T Consensus        24 ~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~-qLnelaelynCnn~lFFesrkr~Dlyl~~a  102 (283)
T COG5154          24 SAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNNMLFFESRKRSDLYLMGA  102 (283)
T ss_pred             hhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHH-HHHHHHHHhcCCceEEEeecccccceeeec
Confidence            5568899999999999999999999999999999999999999999997 899999999999999999999999999999


Q ss_pred             eCCCCCeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEe
Q 021463          124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV  203 (312)
Q Consensus       124 rlP~GPTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~  203 (312)
                      +.|+|||++|+++|.|||+|+.++|||++||+|+|+||..|++.|||+++|+++.++|+.|.+.++|+||+|||++|++.
T Consensus       103 r~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~  182 (283)
T COG5154         103 RIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFIL  182 (283)
T ss_pred             cCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHHHHhhhhHHH
Q 021463          204 DDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYA  283 (312)
Q Consensus       204 dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~k~~~~~k~~  283 (312)
                      ||+||+|+|.|.-.   .|    .+.+.|+|.||||||+|.+++|.+|+|+|++||.|..|||++++|++.+.+.|..|.
T Consensus       183 DgkIWvR~YeI~re---~e----d~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~~  255 (283)
T COG5154         183 DGKIWVRCYEIGRE---NE----DKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLF  255 (283)
T ss_pred             cCeEEEEEEeeccc---cc----cccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHHH
Confidence            99999999999632   22    123469999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCChhhhccc
Q 021463          284 KKVKAKTRRKMHELSNPLEPDEFADMWK  311 (312)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .|++...+|+.+.+++.+++|||+.||.
T Consensus       256 ~R~es~~er~vr~~~nvi~~dpl~n~f~  283 (283)
T COG5154         256 ARKESNLERQVRAQQNVIPEDPLDNVFA  283 (283)
T ss_pred             hhhhHHHHHHHHHhcCCCCCCchhhhcC
Confidence            9999999999999999999999999995

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.2e-45  Score=343.66  Aligned_cols=238  Identities=23%  Similarity=0.334  Sum_probs=202.0

Q ss_pred             CCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463           50 KEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG  128 (312)
Q Consensus        50 k~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G  128 (312)
                      .+.+++.+++-++..+++|..|||+|| |||+..+|..++|+|+ |++.+|...|+||+++|+.+.. .++|.|+|+|.|
T Consensus        25 ~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iK-Dfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG  102 (405)
T KOG2963|consen   25 SPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLK-DFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG  102 (405)
T ss_pred             CceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhh-hHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence            456777777777799999999999999 9999999999999998 8999999999999999987775 799999999999


Q ss_pred             CeEEEEEeeeEehHHHhhh------CCCCCCCCCeEEEcCCCCCc--hhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEE
Q 021463          129 PSVKFLVNAVHTMEELKLT------GNHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVF  200 (312)
Q Consensus       129 PTi~F~V~n~~t~~elk~~------gn~~k~srPlLvF~~~F~~~--~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F  200 (312)
                      ||++|+|..|++.+|+...      -|-+--+.|+||++ +|++.  +|++|+..|||||||+.+++++++..|+||+.+
T Consensus       103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRclli  181 (405)
T KOG2963|consen  103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLI  181 (405)
T ss_pred             CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEE
Confidence            9999999999999999742      12334579999996 99876  899999999999999999999999999999999


Q ss_pred             EEe--CCeEEEEEEeeeccCC----------------------------------------CCcccc-------------
Q 021463          201 SIV--DDHIWFRNYQITVPHN----------------------------------------ESDKVA-------------  225 (312)
Q Consensus       201 ~~~--dd~I~fRhY~I~~~~~----------------------------------------e~e~~~-------------  225 (312)
                      +|.  ++.|.||||.|.+.+.                                        ++|..+             
T Consensus       182 nyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~  261 (405)
T KOG2963|consen  182 NYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVK  261 (405)
T ss_pred             ecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccch
Confidence            995  4679999999987641                                        122110             


Q ss_pred             -----------c----CCCcceEEEEeccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHH---HHhhhhHHHHHHH
Q 021463          226 -----------R----GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALE---KKNKAGKYAKKVK  287 (312)
Q Consensus       226 -----------~----~~~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~---k~~~~~k~~~~~~  287 (312)
                                 .    ..+..|+|+||||||||+|+||++|.|+|.||||.+..+|+.++.++.   .++++.|.+++++
T Consensus       262 ~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkke  341 (405)
T KOG2963|consen  262 EEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKKE  341 (405)
T ss_pred             hhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0    125689999999999999999999999999999999999999986554   3455566666666


Q ss_pred             HHH
Q 021463          288 AKT  290 (312)
Q Consensus       288 ~~~  290 (312)
                      |++
T Consensus       342 Q~e  344 (405)
T KOG2963|consen  342 QEE  344 (405)
T ss_pred             HHH
Confidence            554

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=8.1e-42  Score=302.73  Aligned_cols=188  Identities=37%  Similarity=0.588  Sum_probs=76.7

Q ss_pred             EEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEEE
Q 021463           55 VTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKF  133 (312)
Q Consensus        55 I~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~F  133 (312)
                      |++|+++|.++++|++||+.++ ||+.+..+ .+.|.++ ++.++|..++|++++++++++++|++|||+|+|+|||++|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r-~~~~~l~-~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f   78 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNR-KKKNSLK-DLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEF   78 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE----TT---HH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeC-CCCCchH-HHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEE
Confidence            6899999999999999999999 88876433 2233576 8999999999999999988888899999999999999999


Q ss_pred             EEeeeEehHHHhhhCCCCCCCCCeEEEcCCC-CCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCe-EEEEE
Q 021463          134 LVNAVHTMEELKLTGNHLKASRPLLTFSSNF-GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRN  211 (312)
Q Consensus       134 ~V~n~~t~~elk~~gn~~k~srPlLvF~~~F-~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~-I~fRh  211 (312)
                      +|+||++++|++..+....+++|+|+|++.+ +.+++++++++||+++|+++.++...++++||||+|++++|. |||||
T Consensus        79 ~I~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~  158 (191)
T PF04427_consen   79 SIENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH  158 (191)
T ss_dssp             EEEEEE-HHHHT-------S---EEEEE----------------------------------------------------
T ss_pred             EEEeEEEhhHhcccccCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999986655555889999998332 335899999999999999999999999999999999999888 99999


Q ss_pred             EeeeccCCCCcccccCCCcceEEEEeccceeeeeEEe
Q 021463          212 YQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI  248 (312)
Q Consensus       212 Y~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI  248 (312)
                      | |..+  +++ ..+...+.|+|+||||||+|+|+||
T Consensus       159 Y-i~~~--~~~-~~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  159 Y-IFKS--GSK-NPKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             -------------------------------------
T ss_pred             c-cccc--ccc-cccccccccccccccccccccccCC
Confidence            9 7322  111 0001114689999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.2e-36  Score=265.90  Aligned_cols=176  Identities=40%  Similarity=0.576  Sum_probs=151.7

Q ss_pred             EEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhC-CCCeEEEEeee-CCCCCeEEEEeCCCCCeE
Q 021463           54 LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSV  131 (312)
Q Consensus        54 LI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~-~cs~~l~fe~~-Kk~~~~L~i~rlP~GPTi  131 (312)
                      ||++||++|.++++|++||+.++|++.+..+  .++.+. .+.++|... +|+++++++.+ +++|.+|||+++|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r--~~~~~~-~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINR--GKNKLN-ELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecc--cCccHH-HHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            6899999999999999999999987765433  234454 577777666 88999999876 678999999999999999


Q ss_pred             EEEEeeeEehHHHhh--hCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEEE
Q 021463          132 KFLVNAVHTMEELKL--TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF  209 (312)
Q Consensus       132 ~F~V~n~~t~~elk~--~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~f  209 (312)
                      .|.+.+|.+++|+..  .+|+..+++|+|+|+ +|....+ ++++++|+++|+.+..+..+++++|||++|++.+|.|||
T Consensus        78 ~f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~  155 (180)
T smart00879       78 DFKILNVSLRKELKGFKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFF  155 (180)
T ss_pred             EEEEECcccHhhhhhhhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEE
Confidence            999999999999986  578999999999997 5554443 789999999999999999999999999999999999999


Q ss_pred             EEEeeeccCCCCcccccCCCcceEEEEeccceee
Q 021463          210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL  243 (312)
Q Consensus       210 RhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L  243 (312)
                      |||+|.+.         .+.++++|+||||||+|
T Consensus       156 R~y~i~~~---------~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      156 RHYRIKFG---------KKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EEEEEEcc---------CCCCceEEEEecCCccC
Confidence            99999762         12467999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=2.7e-35  Score=267.13  Aligned_cols=200  Identities=22%  Similarity=0.339  Sum_probs=178.1

Q ss_pred             CCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCc-chhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463           50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSS-KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG  128 (312)
Q Consensus        50 k~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~-lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G  128 (312)
                      -+|+|||+||.+|+++.+|+|+|+.++||+..   ++++|. +. .|++.|..+|+|.+|++...+..|..|.++++|-|
T Consensus        82 dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr---~nRG~~~~~-~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfG  157 (290)
T KOG2781|consen   82 DPKIMVTTSRDPSSRLKMFAKELKLVFPNAQR---LNRGNYVVG-ELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFG  157 (290)
T ss_pred             CCcEEEEeCCCchHHHHHHHHhheEeccChhh---hcccceeHH-HHHHHHHHCCCceEEEEeccCCCCCceEEEecCCC
Confidence            57999999999999999999999999999975   678875 55 89999999999999999888888999999999999


Q ss_pred             CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEE
Q 021463          129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIW  208 (312)
Q Consensus       129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~  208 (312)
                      ||+.|.+.|+.+.+|+...|+ ++..+|.|+|+ ||++..+.+ ++.+|..+||+|+.+      -.|||+|.+.+|.|-
T Consensus       158 PTa~Fsl~nvVmRhdip~~G~-msE~~phlIfd-Nf~t~lG~R-v~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIs  228 (290)
T KOG2781|consen  158 PTAFFSLHNVVMRHDIPDIGT-MSEQKPHLIFD-NFTTKLGKR-VKTILKHLFPVPKDD------SKRVVTFANRNDYIS  228 (290)
T ss_pred             CceEeeeeeeeeccccccccc-ccccCceEEec-cccchHHHH-HHHHHHHhCCCCcCC------cccEEEEecCCceEE
Confidence            999999999999999998886 45569999997 999988765 899999999988744      489999999999999


Q ss_pred             EEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCC---CCeeeeCCCCCCHHHHHH
Q 021463          209 FRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQIRA  272 (312)
Q Consensus       209 fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~n~~~vsp~~~r~  272 (312)
                      ||||.|...          +...++|.|+||||.|+|+-|..|++.   +++.|....|+..+.-|.
T Consensus       229 FRhhvy~~~----------~~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~  285 (290)
T KOG2781|consen  229 FRHHVYKKT----------DGKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRD  285 (290)
T ss_pred             EEEEEEecC----------CCceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhh
Confidence            999999742          225699999999999999999999986   899999999887665443

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=1.7e-33  Score=258.19  Aligned_cols=192  Identities=21%  Similarity=0.322  Sum_probs=164.4

Q ss_pred             cCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463           49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG  128 (312)
Q Consensus        49 nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G  128 (312)
                      ..+|+||+++.++..+...||..|..++||+...  ..+.-.++ .|.++|...++|+++++...++.++.|.|+++|+|
T Consensus        95 ~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~--~R~~~~vk-~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G  171 (302)
T KOG2780|consen   95 FSPKVLITTSKNPKRTTYKFASELLDIIPNSTVK--KRDNYTVK-SIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG  171 (302)
T ss_pred             cCccEEEEcCCCCcccHHHHHHHHHHhCCCceEE--ecCCchHH-HHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence            3479999999999999999999999999999653  22333476 79999999999998877544445788999999999


Q ss_pred             CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEE
Q 021463          129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIW  208 (312)
Q Consensus       129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~  208 (312)
                      ||++|.++||.+.+|++..|++ .+..|.|+.+ ||++..++. +.+||+++|+.+..-     ..+||++|++++|+||
T Consensus       172 PT~~Fkls~~~~~kdi~k~g~~-t~h~PElIlN-NFtTrlG~~-v~r~f~sLfp~~p~f-----~gRrvvtFhnQrD~If  243 (302)
T KOG2780|consen  172 PTAYFKLSNVVLTKDIKKHGRP-TSHIPELILN-NFTTRLGMT-VGRLFASLFPHDPQF-----TGRRVVTFHNQRDYIF  243 (302)
T ss_pred             CceEEEeecccchhhhhhcCCc-ccccchhhhh-cccchhhHH-HHHHHHHhCCCCccc-----cceeEEEEEecCceEE
Confidence            9999999999999999999954 5578999996 999988775 899999999876522     2499999999999999


Q ss_pred             EEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCC---CCeeee
Q 021463          209 FRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYE  260 (312)
Q Consensus       209 fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~  260 (312)
                      ||||+|.+...+         .++.|+|+||||||+|.++++|.|+   |+.-|.
T Consensus       244 FRhhRY~Fkee~---------~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~  289 (302)
T KOG2780|consen  244 FRHHRYEFKEEE---------IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWV  289 (302)
T ss_pred             EEEEEEeecccc---------cccchhhcCCceeeeehhhhhccccccceeeeee
Confidence            999999997422         5689999999999999999999997   666665

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.3e-34  Score=261.30  Aligned_cols=196  Identities=16%  Similarity=0.285  Sum_probs=180.7

Q ss_pred             CccccCCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcch-----hhHHHHhhhCCCCeEEEEeeeCCCCC
Q 021463           45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDL  118 (312)
Q Consensus        45 ~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk-----~~i~~~a~~~~cs~~l~fe~~Kk~~~  118 (312)
                      ...+|....|++.+..++..+.+.|.||..|- |...   ++.++|+++     +.|++++++++|+.+++++++|++|+
T Consensus        22 klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i---~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~   98 (307)
T KOG3031|consen   22 KLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI---RYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPN   98 (307)
T ss_pred             hhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee---eeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCC
Confidence            45778889999999999999999999999996 6554   578888875     57999999999999999999999999


Q ss_pred             eEEEEeCCCC---CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEc-CCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021463          119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH  194 (312)
Q Consensus       119 ~L~i~rlP~G---PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~  194 (312)
                      ||+|||++++   +|++|+|+||.+..+++.++ +..|++|+|+|. ..|++.+.++.+++||.|+|+++.++.+.+.++
T Consensus        99 nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl  177 (307)
T KOG3031|consen   99 NLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL  177 (307)
T ss_pred             ceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence            9999999999   99999999999999999875 788999999999 799999999999999999999999999999999


Q ss_pred             CEEEEEEEeCCe-EEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeec
Q 021463          195 DHVFVFSIVDDH-IWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG  250 (312)
Q Consensus       195 drVi~F~~~dd~-I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~  250 (312)
                      +||++|++.++. |+||+|.+..++|+      +++|+|+|.||||+++|+++++.-
T Consensus       178 ~~v~vfta~~~~~v~~r~Y~lklkKs~------~~~PRiELeE~GPsldf~irR~~~  228 (307)
T KOG3031|consen  178 EYVIVFTATEETNVLFRVYRLKLKKSG------TRTPRIELEEMGPSLDFEIRRTKL  228 (307)
T ss_pred             cEEEEEEeecCceeeeeeeeeeeeecc------CCCCceehhhcCCceeEEEEeccC
Confidence            999999998765 99999999998775      468999999999999999999874

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=1.3e-22  Score=184.40  Aligned_cols=196  Identities=14%  Similarity=0.230  Sum_probs=167.8

Q ss_pred             CccccCCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcch-----hhHHHHhhhCCCCeEEEEeeeCCCCC
Q 021463           45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDL  118 (312)
Q Consensus        45 ~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk-----~~i~~~a~~~~cs~~l~fe~~Kk~~~  118 (312)
                      ...++.+..+++.+-..+..+...|-|+..+- |..   ..+.++|+++     ..++.++++++|+..++|.+.+|+.+
T Consensus        22 klve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~---i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~h   98 (316)
T COG5106          22 KLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKE---IGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRH   98 (316)
T ss_pred             hhhhhhhheEeccCcccchhhhhhhcchhhhccchh---hccccCCcccccccCCHHHHHHHhhhhhhhhhhhhcccccc
Confidence            45677788889989899999999999999995 644   4567888875     57999999999999999999999999


Q ss_pred             eEEEEeCCCC---CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEc-CCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021463          119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH  194 (312)
Q Consensus       119 ~L~i~rlP~G---PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~  194 (312)
                      ||.++|+++.   +||+|.|.+|.+..|+..+| +..|.+|+++|+ .+|+..|.++.|++||.++|++....-....++
T Consensus        99 nlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~-~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagl  177 (316)
T COG5106          99 NLTIGRAFNYELIDMIELKINRYKSVSDFECAG-PELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGL  177 (316)
T ss_pred             ceeEEeecchHHHHHHHHhhhhhhehhhhhccC-CccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcce
Confidence            9999999999   99999999999999998876 457889999999 799999999999999999999866444444567


Q ss_pred             CEEEEEEEeC----C----eEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeec
Q 021463          195 DHVFVFSIVD----D----HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG  250 (312)
Q Consensus       195 drVi~F~~~d----d----~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~  250 (312)
                      .+||+-+.+.    .    .+.||.|....-++.      ++.++++|.|+|||+++++.+++-
T Consensus       178 s~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~------~~lpr~elee~GPrldf~i~R~~~  235 (316)
T COG5106         178 SWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTK------TNLPRLELEECGPRLDFEIVRSYH  235 (316)
T ss_pred             eEEEEEecchhhhccccccceeeeeeeccccccc------CCCCceehhhcccceeeEEEeecC
Confidence            8999999853    2    389999997654322      578999999999999999999974

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.80  E-value=1.2e-18  Score=155.97  Aligned_cols=180  Identities=23%  Similarity=0.254  Sum_probs=153.7

Q ss_pred             CeEEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeC-CCC
Q 021463           51 EKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNG  128 (312)
Q Consensus        51 ~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rl-P~G  128 (312)
                      +++||||||++|.++|+|++||..++|++....   ++ .++. .+.+.|...|.+.+++....++.|.-|.+.++ |.|
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~---rg~~~~~-el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~   77 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLR---RGKKSII-ELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG   77 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceEEe---cCccchh-HHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence            589999999999999999999999999987643   33 3455 79999999999999999888889999999999 999


Q ss_pred             CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhc----CCCCCCCCCCCCCCCEEEEEEEeC
Q 021463          129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVD  204 (312)
Q Consensus       129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~----F~~p~~~~~s~~~~drVi~F~~~d  204 (312)
                      |++.|.+.|+++.+++...++....+-|.++++ +|.+..+...+.++|..+    |..-. .    -....|+.++.++
T Consensus        78 ~~~~f~l~~v~l~re~~~~~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~-~----~~~~~v~~~~~~~  151 (191)
T COG2136          78 LTFSFKLSGVKLRREIPVLGPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNP-A----WEHELVATGANKG  151 (191)
T ss_pred             ceEEEEEecceEEEeccccCCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCc-c----cceeeeeeccccc
Confidence            999999999999999988876555678999996 899988877788999888    64322 1    1247899999999


Q ss_pred             CeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecC
Q 021463          205 DHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG  251 (312)
Q Consensus       205 d~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G  251 (312)
                      +.+.||.|...+..           ..+.+.|+||||+|++-+++.|
T Consensus       152 ~f~~~~~~~~~~~~-----------~~~~~~~vgp~~~~r~~~~~~g  187 (191)
T COG2136         152 DFKSLRRHRRVFEE-----------DGIGLEEVGPRLTLRLWRMEDG  187 (191)
T ss_pred             eEEEEEeeeeEeee-----------eeeeEEEeCceeeeehhhhhhc
Confidence            99999998886531           4689999999999999999988

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.72  E-value=5.6e-16  Score=139.96  Aligned_cols=178  Identities=15%  Similarity=0.093  Sum_probs=135.5

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC---
Q 021463           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---  128 (312)
Q Consensus        53 vLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G---  128 (312)
                      +|||+|+++|.++++|++||..++||+.+.   .++ ..++ +|.+.|..+|.+++|++...++.|+.|.|+++|+|   
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i---~RGk~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~G   77 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYL---TRGKKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWG   77 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEE---ecCCccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCC
Confidence            799999999999999999999999999764   344 4687 89999999999999999888889999999999865   


Q ss_pred             CeEEEEEeeeEehHHHh--hhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCC--CCC------CCCEEE
Q 021463          129 PSVKFLVNAVHTMEELK--LTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRK--SKP------YHDHVF  198 (312)
Q Consensus       129 PTi~F~V~n~~t~~elk--~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~--s~~------~~drVi  198 (312)
                      ||++|+|+|+.+.+|+.  ..|. +..+.|++|.. +|.+.+.+......+-.-++.|.+.+.  |+.      +.+-|+
T Consensus        78 PTa~FkLsnV~l~~ei~~~~~~~-~s~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vL  155 (208)
T PRK03972         78 YLGYLYLHGIKLQREMGFRNLRP-IREDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLG  155 (208)
T ss_pred             ceEEEEEccEEEHHHcccCCCCC-ccccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEE
Confidence            59999999999999993  4553 56689998885 899988664455556677777666653  321      346677


Q ss_pred             EEEEeCCeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecC
Q 021463          199 VFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG  251 (312)
Q Consensus       199 ~F~~~dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G  251 (312)
                      ++.--.-..-+-.|++...+               -.-+||-+-.+.-...+|
T Consensus       156 VV~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~  193 (208)
T PRK03972        156 VIERHPRGMAVNFYRLDVTK---------------ERPVGPLIFVKIWIMEDG  193 (208)
T ss_pred             EEecCCCceEEEEEEecccc---------------ccccCCcEEEEEEEeccC
Confidence            66554333456667775421               133699887776666554

>PRK00933 ribosomal biogenesis protein; Validated

Probab=97.74  E-value=0.00092  Score=59.03  Aligned_cols=114  Identities=22%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEE
Q 021463           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK  132 (312)
Q Consensus        53 vLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~  132 (312)
                      ++||||++++.+++.++++|...+ ++.+..  +.+.+++    +++...+...++++...++.|..|.|...-+.+.+.
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~--Rgk~Sl~----eL~~~~~~~~llVV~E~kg~P~~L~iyd~~~~~~~~   73 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVN--RGKMSLQ----ELLEECEARYLLIIGEYKGNPGALKFYDVEGNKLLS   73 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEc--cCCccHH----HHHHHhccCcEEEEECCCCCCceEEEEECCCCEEEE
Confidence            479999999999999999999998 776532  2233343    444434456888787778889999999987777776


Q ss_pred             EEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcC
Q 021463          133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF  181 (312)
Q Consensus       133 F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F  181 (312)
                      +.+. +....|...  -..++.+|.+.   .++..  ..-+.++|..+.
T Consensus        74 ~~~~-v~~~~~~~~--~~~~~~~p~~~---~~~~~--~~~~~e~f~~~l  114 (165)
T PRK00933         74 YRLS-VKLQREISG--PVFKNRRPIKS---AFDVG--GDELAELFDYFL  114 (165)
T ss_pred             EEEE-eeeecccCc--ceeecCCCccc---chhhH--HHHHHHHHHHHH
Confidence            6664 454444432  23456677653   33321  223455555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.93
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.08

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.93  E-value=2e-25  Score=202.23  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=121.7

Q ss_pred             cCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463           49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG  128 (312)
Q Consensus        49 nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G  128 (312)
                      -++|+||||||++|.++++|++||..++||+.+..+  .+..++ +|++.|..++|+++|+++.+++.|.+|||+++|+|
T Consensus        32 ~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~R--gk~sLk-eL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G  108 (217)
T 2cxh_A           32 GGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSME-ELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP  108 (217)
T ss_dssp             -CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCC--TTCCHH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeec--CCcCHH-HHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence            378999999999999999999999999999976532  345687 89999999999999999999988999999999999


Q ss_pred             ---C-eEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCC
Q 021463          129 ---P-SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEH  187 (312)
Q Consensus       129 ---P-Ti~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~  187 (312)
                         | |++|+|+|+++++|++.+|||+.+++|.|+  .+|++. ++.++++||+++|+.|..+
T Consensus       109 ~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~--~nF~t~-~g~~i~~~f~~lFp~P~~~  168 (217)
T 2cxh_A          109 ERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA--RPLDSG-VAVEFADAFVIAFHARLKP  168 (217)
T ss_dssp             SCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE--EESSSS-THHHHHHHHHHHHCCBSSC
T ss_pred             CCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE--eeecCc-hHHHHHHHHHHHcCCCCCC
Confidence               9 999999999999999999999999999999  589987 7889999999999998863

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.08  E-value=3.4e-10  Score=97.43  Aligned_cols=128  Identities=9%  Similarity=0.023  Sum_probs=85.7

Q ss_pred             eEEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCe
Q 021463           52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS  130 (312)
Q Consensus        52 kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPT  130 (312)
                      |+|||||+++|.++++++++|..++ ++.+-   .|+ ..++ +|.+.|..   . ++++..+++.|..|.++++|+|||
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v---~Rgk~sl~-~L~~~~~~---~-~iVV~e~rg~P~~l~i~hlp~gpt   71 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYI---NRGKMSLR-DVLIEARG---P-VAVVSERHGNPARITFLDERGGER   71 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEEC---CCTTCCHH-HHHHHHSS---C-EEEEEEETTEEEEEEEECTTSCEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEE---eeCCcCHH-HHHHhcCC---C-EEEEEcCCCCCCeEEEEeCCCCCE
Confidence            5799999999999999999999998 77663   333 3465 56665643   2 555444555689999999999999


Q ss_pred             EEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCe
Q 021463          131 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH  206 (312)
Q Consensus       131 i~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~  206 (312)
                      ++|.+ |+.+.+|+...    . ... +++.  + ..+.+.    .|..+|+.|.....    .++|++|...++.
T Consensus        72 ~~f~~-nv~l~~~~~~~----~-~~~-v~~~--~-~~~~~~----~l~~~~~~~~~~~~----~~~~~~i~~~~~~  129 (156)
T 1w94_A           72 GYILF-NPSFEMKKPEL----A-DKA-VRVS--S-CPPGSE----GLCNLMGLEVDESS----SRDAWSIRTDEEY  129 (156)
T ss_dssp             EEEEE-EEEECSSCCCC----S-SCC-CEES--C-CCTTCH----HHHHHHTCEECCSC----CTTEEEEECCSSS
T ss_pred             EEEEE-ceEEcccCccc----C-Cce-EEEe--c-CChhHH----HHHHHHCCCccCCC----CceEEEEEeCCCc
Confidence            99999 99999997522    1 122 3332  2 234443    44455554443211    2678888644433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	8e-13

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 63.7 bits (155), Expect = 8e-13
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 32/178 (17%)

Query: 52  KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVEL---KSCSSCL 108
           ++LVT SRR + R R  + ++ + +P   +  +         ++ EL      +     +
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR------GHYSMEELAREAIIRGADRIV 56

Query: 109 FFECRKHKDLYLWMAKSPNGPS-----VKFLVNAVHTMEELKLTGNHLKASRPLLT---- 159
                +  +  +    +  GP      V F+V  V    E +     L+    L+     
Sbjct: 57  VVG-ERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLD 115

Query: 160 --FSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQIT 215
              +  F                   P+             V   +D       ++  
Sbjct: 116 SGVAVEFA-----DAFVIAFHARLKPPEA------AGYVEAVIESLDARTVAVTFRYG 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.94
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.76

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=2.8e-27  Score=206.73  Aligned_cols=152  Identities=15%  Similarity=0.112  Sum_probs=128.3

Q ss_pred             eEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCC--
Q 021463           52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP--  129 (312)
Q Consensus        52 kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GP--  129 (312)
                      |+|||+|+++|.++++||+||+.+|||+.+..  +.++.++ +|+++|..+|||++|+++.+++.| +||++++|+||  
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~--R~k~~lk-~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~   78 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFT--RGHYSME-ELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPER   78 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTSTTEEECC--CTTCCHH-HHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCCEEee--cCCCcHH-HHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCC
Confidence            89999999999999999999999999998643  3556787 899999999999999998888766 79999999999  


Q ss_pred             ---eEEEEEeeeEehHHHhhhCCC---CCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEe
Q 021463          130 ---SVKFLVNAVHTMEELKLTGNH---LKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV  203 (312)
Q Consensus       130 ---Ti~F~V~n~~t~~elk~~gn~---~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~  203 (312)
                         |++|.|+|+++.+|++....+   ...+.|.++|+ +|.+..+ .++..+|..+|+.|...      -++|++|+++
T Consensus        79 ~~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~liln-nf~t~Lg-~~~~~~f~~lf~~p~~~------~~~vvt~~n~  150 (180)
T d2cxha1          79 PDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDS-GVAVEFA-DAFVIAFHARLKPPEAA------GYVEAVIESL  150 (180)
T ss_dssp             CEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSS-STHHHHH-HHHHHHHCCBSSCCSSS------CEEEEEEEEE
T ss_pred             ccceEEEEEEEEEEehhhccccCCCCCCccccchhHhc-ccchHHH-HHHHHHHHhhCCCchhc------CcEEEEEEec
Confidence               999999999999999753221   23357888885 8987653 46788999999865422      3789999999


Q ss_pred             CCeEEEEEEeee
Q 021463          204 DDHIWFRNYQIT  215 (312)
Q Consensus       204 dd~I~fRhY~I~  215 (312)
                      +|.||+|+|++.
T Consensus       151 ~d~if~~~~~~~  162 (180)
T d2cxha1         151 DARTVAVTFRYG  162 (180)
T ss_dssp             ETTEEEEEEECS
T ss_pred             CCeEEEEEEecC
Confidence            999999999983

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.6e-19  Score=151.93  Aligned_cols=134  Identities=10%  Similarity=0.089  Sum_probs=108.6

Q ss_pred             EEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccC-cchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeE
Q 021463           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKS-SKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSV  131 (312)
Q Consensus        53 vLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn-~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi  131 (312)
                      +|||+||++|.++++|++||..++|++ +   +.|++ .++ +|.+.|    .++++++...++.|..|.+ ++|+|||+
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~---~~Rgk~~lk-elv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~   70 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-Y---INRGKMSLR-DVLIEA----RGPVAVVSERHGNPARITF-LDERGGER   70 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-E---CCCTTCCHH-HHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-E---EEcCCCcHH-HHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcE
Confidence            589999999999999999999999975 3   34443 465 676655    4777777667777888988 99999999


Q ss_pred             EEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEEEEE
Q 021463          132 KFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRN  211 (312)
Q Consensus       132 ~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~fRh  211 (312)
                      .|.+.|+.+..|           +|.|+++ +|.+....+ +.++|..+|+.+.....    -++|++|+++||.||++|
T Consensus        71 ~f~l~~v~l~~e-----------~p~li~~-~f~t~lg~~-v~~~L~~lf~~~~~~~~----~~~~itf~n~~d~i~~~~  133 (154)
T d1w94a1          71 GYILFNPSFEMK-----------KPELADK-AVRVSSCPP-GSEGLCNLMGLEVDESS----SRDAWSIRTDEEYAWVME  133 (154)
T ss_dssp             EEEEEEEEECSS-----------CCCCSSC-CCEESCCCT-TCHHHHHHHTCEECCSC----CTTEEEEECCSSSSEEEE
T ss_pred             EEEEeeEEcccc-----------CCcCccc-ccccccchh-HHHHHHHHcCCChhhcc----eeeEEEEecCCCEEEEEE
Confidence            999999987665           6888885 898876654 66899999998765432    256999999999999999


Q ss_pred             Ee
Q 021463          212 YQ  213 (312)
Q Consensus       212 Y~  213 (312)
                      |-
T Consensus       134 ~~  135 (154)
T d1w94a1         134 LM  135 (154)
T ss_dssp             EE
T ss_pred             Ee
Confidence            93