Citrus Sinensis ID: 021476

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
cccccccccEEEEEccEEEEHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEcccccccccEEEEEEEEEEEEcccHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccccccccEEEEEEcEEEEEEHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccEEEEEEcEEEccccccHEEcHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEEEEccccccEEEEEEccEEEEEHHHHHHcHHHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
masssssgltfklhpLVIVNISDHYTRVKsqmnhsssatttnddnnngaqprvyGCVIGIQRGRTVEIFNSfellydpsthsLDRAFLEKKQELYKKVFPHFYIlgwystgsdaqesdMHIHKALMdinespvyvllnpsinpaqkdlpvtiFESELHVIEGIPQLIFVRSSYTIETVEAerisvdhvahlkpsdggsaATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMqkgeipcenSLLRQVSSLLRrlpaiesekfQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTaydrhsrrggrtafi
masssssgltfklhPLVIVNISDHYTRVKSQMNHSssatttnddnnngaQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNtaydrhsrrggrtafi
MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSAtttnddnnnGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENsllrqvssllrrlPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
********LTFKLHPLVIVNISDHYTR************************RVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDA**SDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLK******AATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAY*************
**********FKLHPLVIVNISDHYTRVKSQMNHSS**********NGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDH************************SAIKMLNSRIRVLHHYLVAM****IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD*******************
*********TFKLHPLVIVNISDHYTRV**************DDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR***********
******SGLTFKLHPLVIVNISDHYTRVKSQ******************QPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS*********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
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MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSRRGGRTAFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
Q8W206317 COP9 signalosome complex yes no 1.0 0.984 0.823 1e-155
Q8W1P0317 COP9 signalosome complex no no 1.0 0.984 0.794 1e-151
Q54C92309 COP9 signalosome complex yes no 0.910 0.919 0.432 2e-69
Q5REY0328 COP9 signalosome complex yes no 0.913 0.868 0.406 2e-62
A7TX81323 COP9 signalosome complex yes no 0.913 0.882 0.406 2e-62
O88545324 COP9 signalosome complex yes no 0.913 0.879 0.406 3e-62
A6QQ21324 COP9 signalosome complex yes no 0.913 0.879 0.406 3e-62
Q7L5N1327 COP9 signalosome complex yes no 0.913 0.871 0.403 5e-62
Q6NUC2318 COP9 signalosome complex N/A no 0.913 0.896 0.4 8e-62
Q07G98319 COP9 signalosome complex yes no 0.913 0.893 0.4 1e-61
>sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/317 (82%), Positives = 286/317 (90%), Gaps = 5/317 (1%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNG-----AQPRVYG 55
           MA SSSSGLTFKLHPLVIVNISDHYTRVK+Q+N  +S   +   +NNG       PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60

Query: 56  CVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQ 115
           CVIG+QRGRTVEIFNSFELLYDPST +LDR+FLEKKQELYKKVFP FYILGWYSTGSDA+
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120

Query: 116 ESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTI 175
           ESDMHIHKALMDINESPVYVLLNP+IN  QKDLPVTI+ESELHVI+GIPQLIF  +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180

Query: 176 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE 235
           ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+  L AMQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240

Query: 236 IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 295
             C+NS+LRQVSSLLRRLPA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKF
Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300

Query: 296 NTAYDRHSRRGGRTAFI 312
           NTAYDR++RRGGRTAF+
Sbjct: 301 NTAYDRNTRRGGRTAFM 317
Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W1P0|CSN6B_ARATH COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2 Back     alignment and function description
>sp|Q54C92|CSN6_DICDI COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1 Back     alignment and function description
>sp|Q5REY0|CSN6_PONAB COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1 Back     alignment and function description
>sp|A7TX81|CSN6_PIG COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1 Back     alignment and function description
>sp|O88545|CSN6_MOUSE COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1 Back     alignment and function description
>sp|A6QQ21|CSN6_BOVIN COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1 Back     alignment and function description
>sp|Q7L5N1|CSN6_HUMAN COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1 Back     alignment and function description
>sp|Q6NUC2|CSN6_XENLA COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1 Back     alignment and function description
>sp|Q07G98|CSN6_XENTR COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
255576641318 signalosome subunit, putative [Ricinus c 1.0 0.981 0.911 1e-169
224122056306 predicted protein [Populus trichocarpa] 0.980 1.0 0.923 1e-167
225463552317 PREDICTED: COP9 signalosome complex subu 1.0 0.984 0.880 1e-161
356508182318 PREDICTED: COP9 signalosome complex subu 1.0 0.981 0.867 1e-160
388496238317 unknown [Lotus japonicus] 1.0 0.984 0.864 1e-160
388516353318 unknown [Medicago truncatula] 0.996 0.977 0.858 1e-159
356517784322 PREDICTED: COP9 signalosome complex subu 1.0 0.968 0.872 1e-159
297796501317 hypothetical protein ARALYDRAFT_495718 [ 1.0 0.984 0.835 1e-155
449443994326 PREDICTED: COP9 signalosome complex subu 0.993 0.950 0.818 1e-154
18423847317 COP9 signalosome complex subunit 6a [Ara 1.0 0.984 0.823 1e-153
>gi|255576641|ref|XP_002529210.1| signalosome subunit, putative [Ricinus communis] gi|223531328|gb|EEF33166.1| signalosome subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/318 (91%), Positives = 297/318 (93%), Gaps = 6/318 (1%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNG------AQPRVY 54
           MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMN   + TT    +  G      A PRVY
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPVTTTTNGGSDGGGENTVSLAPPRVY 60

Query: 55  GCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDA 114
           GCVIG+QRGRTVEIFNSFELLYDP THSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDA
Sbjct: 61  GCVIGVQRGRTVEIFNSFELLYDPITHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDA 120

Query: 115 QESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYT 174
           +ESDMHIHKALMDINESPVYVLLNPSINPAQKDLPV I+ESELHVI+GIPQLIFVRSSYT
Sbjct: 121 EESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVIIYESELHVIDGIPQLIFVRSSYT 180

Query: 175 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKG 234
           IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYL AMQKG
Sbjct: 181 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLAAMQKG 240

Query: 235 EIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDK 294
           EIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLI YLAMFTNC+STMNELVDK
Sbjct: 241 EIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLITYLAMFTNCSSTMNELVDK 300

Query: 295 FNTAYDRHSRRGGRTAFI 312
           FNTAYDRHSRRGGRTAFI
Sbjct: 301 FNTAYDRHSRRGGRTAFI 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122056|ref|XP_002330530.1| predicted protein [Populus trichocarpa] gi|222872088|gb|EEF09219.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225463552|ref|XP_002267156.1| PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera] gi|296090054|emb|CBI39873.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508182|ref|XP_003522838.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Glycine max] Back     alignment and taxonomy information
>gi|388496238|gb|AFK36185.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388516353|gb|AFK46238.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356517784|ref|XP_003527566.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Glycine max] Back     alignment and taxonomy information
>gi|297796501|ref|XP_002866135.1| hypothetical protein ARALYDRAFT_495718 [Arabidopsis lyrata subsp. lyrata] gi|297311970|gb|EFH42394.1| hypothetical protein ARALYDRAFT_495718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449443994|ref|XP_004139760.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Cucumis sativus] gi|449482625|ref|XP_004156353.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18423847|ref|NP_568839.1| COP9 signalosome complex subunit 6a [Arabidopsis thaliana] gi|55976550|sp|Q8W206.2|CSN6A_ARATH RecName: Full=COP9 signalosome complex subunit 6a; Short=AtCSN6a; Short=Signalosome subunit 6a gi|15809663|gb|AAL07275.1| COP9 complex subunit 6 [Arabidopsis thaliana] gi|108385379|gb|ABF85779.1| At5g56280 [Arabidopsis thaliana] gi|332009361|gb|AED96744.1| COP9 signalosome complex subunit 6a [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2177601317 CSN6A "AT5G56280" [Arabidopsis 1.0 0.984 0.779 1.7e-128
TAIR|locus:2131493317 CSN6B "AT4G26430" [Arabidopsis 1.0 0.984 0.757 6.1e-126
ZFIN|ZDB-GENE-050417-289297 cops6 "COP9 constitutive photo 0.903 0.949 0.401 3.7e-55
UNIPROTKB|F1MG10324 COPS6 "COP9 signalosome comple 0.907 0.873 0.396 3.4e-54
UNIPROTKB|A7TX81323 COPS6 "COP9 signalosome comple 0.907 0.876 0.396 3.4e-54
MGI|MGI:1349439324 Cops6 "COP9 (constitutive phot 0.907 0.873 0.396 3.4e-54
UNIPROTKB|A6QQ21324 COPS6 "COP9 signalosome comple 0.907 0.873 0.396 4.3e-54
RGD|1309919344 Cops6 "COP9 signalosome subuni 0.907 0.822 0.396 4.3e-54
UNIPROTKB|E7EM64326 COPS6 "COP9 signalosome comple 0.907 0.868 0.392 1.1e-53
UNIPROTKB|Q7L5N1327 COPS6 "COP9 signalosome comple 0.907 0.865 0.392 1.1e-53
TAIR|locus:2177601 CSN6A "AT5G56280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 247/317 (77%), Positives = 269/317 (84%)

Query:     1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGA-----QPRVYG 55
             MA SSSSGLTFKLHPLVIVNISDHYTRVK+Q+N  +S          G       PRVYG
Sbjct:     1 MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60

Query:    56 CVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQ 115
             CVIG+QRGRTVEIFNSFELLYDPST +LDR+FLEKKQELYKKVFP FYILGWYSTGSDA+
Sbjct:    61 CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120

Query:   116 ESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTI 175
             ESDMHIHKALMDINESPVYVLLNP+IN  QKDLPVTI+ESELHVI+GIPQLIF  +SYTI
Sbjct:   121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180

Query:   176 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE 235
             ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+  L AMQKG+
Sbjct:   181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240

Query:   236 IPCENXXXXXXXXXXXXXPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 295
               C+N             PA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKF
Sbjct:   241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300

Query:   296 NTAYDRHSRRGGRTAFI 312
             NTAYDR++RRGGRTAF+
Sbjct:   301 NTAYDRNTRRGGRTAFM 317
GO:0005634 "nucleus" evidence=TAS
GO:0030163 "protein catabolic process" evidence=TAS
GO:0008180 "signalosome" evidence=TAS;IPI
GO:0009640 "photomorphogenesis" evidence=RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0010387 "signalosome assembly" evidence=IMP
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2131493 CSN6B "AT4G26430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-289 cops6 "COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG10 COPS6 "COP9 signalosome complex subunit 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A7TX81 COPS6 "COP9 signalosome complex subunit 6" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1349439 Cops6 "COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQ21 COPS6 "COP9 signalosome complex subunit 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309919 Cops6 "COP9 signalosome subunit 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EM64 COPS6 "COP9 signalosome complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L5N1 COPS6 "COP9 signalosome complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7L5N1CSN6_HUMANNo assigned EC number0.40320.91340.8715yesno
Q54C92CSN6_DICDINo assigned EC number0.43270.91020.9190yesno
Q8W1P0CSN6B_ARATHNo assigned EC number0.79491.00.9842nono
A7TX81CSN6_PIGNo assigned EC number0.40650.91340.8823yesno
Q8W206CSN6A_ARATHNo assigned EC number0.82331.00.9842yesno
O88545CSN6_MOUSENo assigned EC number0.40650.91340.8796yesno
Q07G98CSN6_XENTRNo assigned EC number0.40.91340.8934yesno
Q9VCY3CSN6_DROMENo assigned EC number0.37580.91660.8387yesno
Q5REY0CSN6_PONABNo assigned EC number0.40650.91340.8689yesno
A6QQ21CSN6_BOVINNo assigned EC number0.40650.91340.8796yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
cd08063288 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) d 1e-139
cd08062280 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) 2e-34
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 1e-31
PLN03246303 PLN03246, PLN03246, 26S proteasome regulatory subu 2e-30
pfam13012115 pfam13012, MitMem_reg, Maintenance of mitochondria 6e-29
cd08064265 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) 2e-25
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 2e-17
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 4e-09
>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information 
 Score =  395 bits (1016), Expect = e-139
 Identities = 150/304 (49%), Positives = 197/304 (64%), Gaps = 20/304 (6%)

Query: 9   LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEI 68
           L+ KLHPLVI+NISDH TR ++Q              +    PRV G ++G Q GR +EI
Sbjct: 1   LSVKLHPLVILNISDHITRHRAQ--------------SQSEPPRVVGALLGQQDGREIEI 46

Query: 69  FNSFELLYDPSTH---SLDRAFLEKKQELYKKVFPHFYILGWYSTGSD-AQESDMHIHKA 124
            NSFEL YD +      LD+ FLE + E +K+VF     +GWY+TG     ESD+ IHK 
Sbjct: 47  ENSFELKYDTNEDGEIVLDKEFLETRLEQFKQVFKDLDFVGWYTTGPGGPTESDLPIHKQ 106

Query: 125 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERIS 184
           +++INESPV +LL+P  N + KDLPVTI+ES L +++G   L F    YTIET EAERI 
Sbjct: 107 ILEINESPVLLLLDPEANASGKDLPVTIYESVLELVDGEATLRFRELPYTIETGEAERIG 166

Query: 185 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLR 244
           VDHVA    S G S  + +AAHL   H+AIKMLNSR+ ++  YL A+  GE+P ++S+LR
Sbjct: 167 VDHVARGGAS-GSSEKSTVAAHLQAQHNAIKMLNSRVELILEYLKAVPVGEVPPDHSILR 225

Query: 245 QVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHSR 304
            +S+L  RLP ++SE F+++ L EYND LL+AYLA  T   +T+NELVDKFN  YDR   
Sbjct: 226 SISALCSRLPVLKSEAFREELLAEYNDVLLVAYLATLTKGCNTLNELVDKFNVVYDR-KG 284

Query: 305 RGGR 308
            G R
Sbjct: 285 SGRR 288

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleavage of Rbx1 and increased deneddylation of cullins inactivate CRLs and presumably stabilize pro-apoptotic factors for final apoptotic steps. While CSN6 shows a typical MPN metalloprotease fold, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. Length = 288
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|215645 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function Back     alignment and domain information
>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
KOG3050299 consensus COP9 signalosome, subunit CSN6 [Posttran 100.0
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 100.0
PLN03246303 26S proteasome regulatory subunit; Provisional 100.0
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 100.0
KOG2975288 consensus Translation initiation factor 3, subunit 100.0
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
KOG1556309 consensus 26S proteasome regulatory complex, subun 100.0
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 100.0
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 99.97
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.94
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.93
PF13012115 MitMem_reg: Maintenance of mitochondrial structure 99.87
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.85
KOG1560339 consensus Translation initiation factor 3, subunit 99.85
KOG1554347 consensus COP9 signalosome, subunit CSN5 [Posttran 99.66
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.62
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.47
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.42
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.15
KOG1555316 consensus 26S proteasome regulatory complex, subun 98.85
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 98.74
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 98.4
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 98.37
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 98.18
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 97.98
KOG3289199 consensus Uncharacterized conserved protein encode 97.76
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 96.76
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 95.97
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 95.76
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 94.83
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 87.14
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 81.37
>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-74  Score=501.70  Aligned_cols=296  Identities=55%  Similarity=0.908  Sum_probs=276.0

Q ss_pred             CCCCCCCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCCc
Q 021476            1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPST   80 (312)
Q Consensus         1 ~~~~~~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~   80 (312)
                      ||.+++++.+|.+|||||+||+|||+|.+.+.              ++..++|+|+|+|.|.|+.|||.|||++..+..+
T Consensus         1 ~Aps~S~s~tv~LHPLVImniSdH~tR~k~Q~--------------gpp~~~VyGaliG~Q~GR~vEi~NSFeL~~d~~~   66 (299)
T KOG3050|consen    1 MAPSSSGSVTVKLHPLVIMNISDHYTRVKTQL--------------GPPVKQVYGALIGKQRGRNVEIMNSFELKMDTEE   66 (299)
T ss_pred             CCCCCCCceeEEeccEEEEehhHHHHHHHhhc--------------CCcHHHhhhhheecccCceEEEeeeeEEEecchh
Confidence            68889999999999999999999999999773              1123489999999999999999999999987644


Q ss_pred             --ccccHHHHHHHHHHHhhhCCCCceEEEEecCCCCCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEeeec
Q 021476           81 --HSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELH  158 (312)
Q Consensus        81 --~~iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~~~  158 (312)
                        ..+|.+|+.++.+||++|||++.++|||++|+++++.|+.||++++..+++|++|.++|..+. ..+.|+..|++..+
T Consensus        67 ~~~~~dke~l~kk~eqykqVFpdl~vlGwYttG~d~t~sd~~i~k~l~~i~esplflkLNp~t~~-t~~~pv~lfese~d  145 (299)
T KOG3050|consen   67 DTETIDKEYLEKKEEQYKQVFPDLYVLGWYTTGSDPTPSDIHIHKQLMDINESPLFLKLNPATNH-TDKDPVTLFESEID  145 (299)
T ss_pred             hhhhccHHHHHHHHHHHHHhcccceEEEEeecCCCCChhhhHHHHHHHhhhcCceEEEecchhcc-ccCCCceeeeeehe
Confidence              369999999999999999999999999999999999999999999999999999999998765 34559999999989


Q ss_pred             cccCCceeeeEeeceEEecchhhHHHHHHHhhcCCCCCCchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 021476          159 VIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC  238 (312)
Q Consensus       159 ~~~g~~~~~f~~i~~~i~~~eaErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~  238 (312)
                      +.+|.+...|.|+.|+++++|||||||||+++.++++++.. +.+..++..+..|++||+.|++.|++|+++|.+|++++
T Consensus       146 vidg~~q~~f~~~tytl~teEaERIgVdHVA~lt~~~gge~-s~VaeHl~AQdsA~~ml~~Rvklil~Y~k~~e~G~l~~  224 (299)
T KOG3050|consen  146 VIDGEAQMLFVPLTYTLATEEAERIGVDHVARLTPSDGGEG-SSVAEHLEAQDSAIKMLDNRVKLILAYLKKVEAGTLQP  224 (299)
T ss_pred             eecCcceeeeeeeEEEEeehhhhhccchhheeeccCCCCCc-chHHHHHhhHHHHHHHHhhHHHHHHHHHhhhhcCCcCc
Confidence            99999999999999999999999999999999988876533 45689999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccc-CCCCCccCC
Q 021476          239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS-RRGGRTAFI  312 (312)
Q Consensus       239 d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~~~D~lmi~yLs~ltk~~~~l~~l~~K~~~~~~~~~-~~~~~~~~~  312 (312)
                      |.+|||+...+|.+||.+++++|.+.|..++||+.+++||+.+|++++.||++|+|||++|||+| +||||++|.
T Consensus       225 N~eILrea~~L~~~Lp~~~~~~F~d~F~~e~nd~~l~syl~~iT~~~~nMn~~vnKfn~~ydr~gt~R~~r~~~f  299 (299)
T KOG3050|consen  225 NFEILREAYALCHRLPVMESEKFQDNFYMECNDVGLISYLGTITKCCNNMNEVVNKFNTLYDRQGTRRRMRGLFF  299 (299)
T ss_pred             cHHHHHHHHHHHhhccccchHHHhHHHHHhcchhhHHHHHHHHHHhhccHHHHHHHHHHHHHhhhhhccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999995 999999984

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>KOG2975 consensus Translation initiation factor 3, subunit f (eIF-3f) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>KOG3289 consensus Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene [General function prediction only] Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
4e0q_A141 Crystal Structure Of Mpn Domain From Cop9 Signaloso 5e-23
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 7e-10
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 7e-10
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 3e-07
>pdb|4E0Q|A Chain A, Crystal Structure Of Mpn Domain From Cop9 Signalosome Length = 141 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 20/155 (12%)
Query: 4   SSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGAQPR-VYGCVIGIQR 62
            S   +T  LHPLVI NIS+H+TR ++Q                  +PR VYG +IG Q+
Sbjct: 1   GSHXSVTISLHPLVIXNISEHWTRFRAQH----------------GEPRQVYGALIGKQK 44
Query: 63  GRTVEIFNSFELLYD--PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMH 120
           GR +EI NSFEL  D       +++ +  KK++ YK+VF     +GWY+TG +    D+ 
Sbjct: 45  GRNIEIXNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK 104
Query: 121 IHKALMDINESPVYVLLNPSINPAQKDLPVTIFES 155
           I + +  INE P+ + LNP ++ +   LP+ +FES
Sbjct: 105 IQRQIAAINECPIXLQLNP-LSRSVDHLPLKLFES 138
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 1e-41
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 2e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
 Score =  140 bits (354), Expect = 1e-41
 Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 21/159 (13%)

Query: 5   SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGR 64
           S   +T  LHPLVI+NIS+H+TR ++Q               +G   +VYG +IG Q+GR
Sbjct: 2   SHMSVTISLHPLVIMNISEHWTRFRAQ---------------HGEPRQVYGALIGKQKGR 46

Query: 65  TVEIFNSFELLY--DPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIH 122
            +EI NSFEL          +++ +  KK++ YK+VF     +GWY+TG +    D+ I 
Sbjct: 47  NIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQ 106

Query: 123 KALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIE 161
           + +  INE P+ + LNP  + +   LP+ +FES   +I+
Sbjct: 107 RQIAAINECPIMLQLNPL-SRSVDHLPLKLFES---LID 141
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 100.0
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 100.0
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 100.0
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 99.97
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.25
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.12
2kks_A146 Uncharacterized protein; NESG, structural genomics 98.7
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 98.42
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 97.82
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 93.76
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 92.09
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 88.63
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.7e-65  Score=481.52  Aligned_cols=268  Identities=24%  Similarity=0.463  Sum_probs=177.4

Q ss_pred             CCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCC-----c
Q 021476            6 SSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPS-----T   80 (312)
Q Consensus         6 ~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~-----~   80 (312)
                      ....+|.|||||||+|+|||+|...+                 .+.||+|+|||.++|+.|||+|||++|++++     .
T Consensus         3 ~~~~~V~vhPlVll~I~dH~~R~~~~-----------------~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~   65 (338)
T 4b4t_U            3 LQHEKVTIAPLVLLSALDHYERTQTK-----------------ENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDV   65 (338)
T ss_dssp             CCCSEEEECHHHHHHHHHHHHHHTTT-----------------CCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTC
T ss_pred             CCCCEEEEecHHHHHHHHHHHHhhcC-----------------CCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCcc
Confidence            45678999999999999999997543                 2469999999999999999999999998642     3


Q ss_pred             ccccHHHHHHHHHHHhhhCCCCceEEEEecCCCCCcchHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCcceEEEEeeecc
Q 021476           81 HSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINE-SPVYVLLNPSINPAQKDLPVTIFESELHV  159 (312)
Q Consensus        81 ~~iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~~~~~d~~i~~~~~~~~~-~pi~L~vD~~~~~~~~~lpi~ay~~~~~~  159 (312)
                      |++|++|+++|+++|++|||++.+||||+||+.++..|+.||++|+++++ +|++|++|+...  ++++|++||++....
T Consensus        66 ~~~D~~y~~~m~~~~kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~  143 (338)
T 4b4t_U           66 WFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQV  143 (338)
T ss_dssp             EEECHHHHHHHHHHHHHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEEC
T ss_pred             ccccHHHHHHHHHHHhhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhc
Confidence            68999999999999999999999999999999999999999999999874 899999999765  578999999986544


Q ss_pred             cc-C-CceeeeEeeceEEecchhhHHHHHHHhhcCCCCCCchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 021476          160 IE-G-IPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIP  237 (312)
Q Consensus       160 ~~-g-~~~~~f~~i~~~i~~~eaErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~  237 (312)
                      .+ | .....|.++|++|.++|+|||||+|+++.....+   ...+..++..+.+++++|+.||+.|++||++|.+|++|
T Consensus       144 ~~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~~---~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~  220 (338)
T 4b4t_U          144 KDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQA---AGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELP  220 (338)
T ss_dssp             SSCSTTCEEEEEEECEEECSCHHHHHHHHHHHHHHSSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cCCCcccccEEEEeeeEeecCcHHHHHHHHHHhccccCc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            33 2 3467899999999999999999999998543322   24567789999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCCCCh-----------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 021476          238 CENSLLRQVSSLLRRLPAIES-----------------EKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF  295 (312)
Q Consensus       238 ~d~~ilR~i~~l~~~lP~~~~-----------------~~f~~~~~~~~~D~lmi~yLs~ltk~~~~l~~l~~K~  295 (312)
                      +|++|||+|+++|+++|.++.                 ++|+++|+.+.||+||++|||+|+|++.+|+++++..
T Consensus       221 ~n~~ilr~l~~~~~~lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk  295 (338)
T 4b4t_U          221 INHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENK  295 (338)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhhCCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998854                 4689999999999999999999999999999999765
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 97.26
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=0.0005  Score=52.78  Aligned_cols=105  Identities=7%  Similarity=0.013  Sum_probs=63.2

Q ss_pred             ceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCCc-ccccHHH
Q 021476            9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPST-HSLDRAF   87 (312)
Q Consensus         9 ~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~-~~iD~~~   87 (312)
                      .+++|..-++-.|.+|..+..                    |...||.|+|..  +  .|+..+.+|..... ...+   
T Consensus         2 ~~l~I~~~~l~~i~~hA~~~~--------------------P~E~cGlL~G~~--~--~i~~~~~~~n~~~~~~~~~---   54 (121)
T d1oi0a_           2 SSMKISRGLLKTILEAAKSAH--------------------PDEFIALLSGSK--D--VMDELIFLPFVSGSVSAVI---   54 (121)
T ss_dssp             CSCEECHHHHHHHHHHHHHHT--------------------TSCCEEEEEEST--T--EECEEEECCCCC----------
T ss_pred             CeEEECHHHHHHHHHHHHhcC--------------------CceeEEEEEecC--C--cEEEEEEcCCCCCCccccc---
Confidence            467788888999999998865                    468999999953  3  45666777643221 1111   


Q ss_pred             HHHHHHHHhhhCCCCceEEEEecCCC----CCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEe
Q 021476           88 LEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFES  155 (312)
Q Consensus        88 ~~~m~~l~~~V~p~~~iVGWY~tg~~----~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~  155 (312)
                      ...|.      -.++.+||||++++.    ++..|+.  .+  .. ..-+++++-+-.    +.-.+++|..
T Consensus        55 ~~~~~------~~~~~ivgi~HSHP~~~a~PS~~D~~--~~--~~-~g~~~~Ivs~p~----~~~~~~~~~~  111 (121)
T d1oi0a_          55 HLDML------PIGMKVFGTVHSHPSPSCRPSEEDLS--LF--TR-FGKYHIIVCYPY----DENSWKCYNR  111 (121)
T ss_dssp             ------------CCCEEEEEEEEESSSCCSCCHHHHH--HH--HH-SCSEEEEEETTC----CTTCEEEEET
T ss_pred             ccchh------hcCCeEEEEEEecCCCCCCcCHHHHH--hh--hc-cCCEEEEEeCCC----CCCCEEEEeC
Confidence            11111      237899999999864    4555543  22  22 234777776431    2234899973