Citrus Sinensis ID: 021495

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-

MRLNGEISHKEDEEDEEEKQSGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY

cccccccccccccHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHcccEEEEEccccccccccccEEEEEccccHHHHHHHHHHHHHcccEEEEccHHHHHHHccHHHHHHHHHHcccccccccEEcccEEEEcccccccHHHHHHccccccEEEEEcccccccccccEEEEEcccccccccccEEEEEEEccccEEEEEEEEccEEEEEEEcccccccHHHHHccccEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEccccccc

ccccccccccccHcHcccccccccccccEEEEEEccHHHHHHHcHHHHHHHHHHcccEEEEccccccHHHccccEEEEEEcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccEccccEEEEcccHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEccccHHcccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccHcccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccc

mrlngeishkedeedeeekqsgvlqperLVVGYALTskkkksflqPKLEILARNkgisfvaidqnrplsdqgpfDVVLHKLSGMEWCKIIEDYRqkhpevtildppdaiKHLHNRQSMLQDVADlnlsdcngkvrvprqmvitkdslsipdQVFEAGlklplvakplvvdgsaksHELFLAYdrfslseleppmlLQEFVNHGGILFKIYIIGETIKVVRrfslpnvskrELAKVVSVfrfprvssaaasaddadldpgiaelpprplLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDinyfpgry

mrlngeishkedeedeeekqsgvlqperLVVGYALtskkkksflqpKLEILARNKGISFVAidqnrplsdQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSlpnvskrelakvvsvfrfprvssaaasaddadldpgiaelpprplLERLARELRHRLGLrlfnidmirehgmrdvfYVIDINYFPGRY

MRLNGEISHKedeedeeeKQSGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGlklplvakplvvDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKvvsvfrfprvssaaasaddadLDPGIAelpprpllerlarelrhrlglrlFNIDMIREHGMRDVFYVIDINYFPGRY

***********************************************LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV***********************LLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFP***

******************************VGYALTSKKK****QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN*********VSVF********************IAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY

**********************VLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV********DADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY

*************************PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNV*****************************DPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		311	2.2.26 [Sep-21-2011]
Q9SUG3		353	Inositol-tetrakisphosphat	yes	no	0.993	0.875	0.706	1e-117
O81893		391	Inositol-tetrakisphosphat	no	no	0.906	0.721	0.737	1e-114
Q84Y01		342	Inositol-tetrakisphosphat	N/A	no	0.929	0.845	0.438	4e-66
Q9SBA5		319	Inositol-tetrakisphosphat	no	no	0.900	0.877	0.408	6e-58
Q8BYN3		419	Inositol-tetrakisphosphat	yes	no	0.881	0.653	0.313	2e-34
P0C0T1		419	Inositol-tetrakisphosphat	yes	no	0.884	0.656	0.327	2e-34
Q7ZU91		396	Inositol-tetrakisphosphat	no	no	0.890	0.699	0.312	4e-34
Q13572		414	Inositol-tetrakisphosphat	no	no	0.881	0.661	0.309	2e-33
Q5F480		407	Inositol-tetrakisphosphat	yes	no	0.890	0.680	0.312	4e-33
Q7SY78		396	Inositol-tetrakisphosphat	N/A	no	0.881	0.691	0.313	6e-32

>sp\|Q9SUG3\|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2	Back alignment and function desciption

 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 260/313 (83%), Gaps = 4/313 (1%)

Query: 1   MRLNGEISHKEDEEDEEEKQSGVLQP----ERLVVGYALTSKKKKSFLQPKLEILARNKG 56
           + +NG    +  E++     S V++     + ++VGYALTSKK KSFLQPKLE LARNKG
Sbjct: 9   ITMNGTREMETTEQETSSPCSLVIEAFPVKKSIIVGYALTSKKIKSFLQPKLEGLARNKG 68

Query: 57  ISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116
           I FVAIDQN+PLS+QGPFD+VLHK  G EW +I+E++R  HP+VT+LDPPDAI HL NRQ
Sbjct: 69  ILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQ 128

Query: 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176
           SMLQ VAD+NLSD NG+V VP+Q+VI KD+ SIP+ V  AGL+LPLVAKPLV DGSAKSH
Sbjct: 129 SMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSH 188

Query: 177 ELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVV 236
           EL LAYD+ SL +LEPP++LQEFVNHGG+LFK+YI+GE I+VVRRFSLP+VS+REL K  
Sbjct: 189 ELSLAYDQHSLLKLEPPLVLQEFVNHGGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSA 248

Query: 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMR 296
            VFRFPRVS AAASADDADLDP IAELPPRPLLERLA+ELR  LGLRLFN+D+IREHG R
Sbjct: 249 GVFRFPRVSCAAASADDADLDPSIAELPPRPLLERLAKELRRGLGLRLFNLDIIREHGTR 308

Query: 297 DVFYVIDINYFPG 309
           D FYVIDINYFPG
Sbjct: 309 DRFYVIDINYFPG 321

Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 9

>sp\|O81893\|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=2 SV=3	Back alignment and function description

>sp\|Q84Y01\|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SBA5\|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BYN3\|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2 SV=1	Back alignment and function description

>sp\|P0C0T1\|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1 SV=1	Back alignment and function description

>sp\|Q7ZU91\|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2 SV=2	Back alignment and function description

>sp\|Q13572\|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2	Back alignment and function description

>sp\|Q5F480\|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2 SV=1	Back alignment and function description

>sp\|Q7SY78\|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		311
255562182		327	Inositol-tetrakisphosphate 1-kinase, put	0.996	0.948	0.792	1e-134
351722440		341	inositol phosphate kinase [Glycine max]	0.993	0.906	0.781	1e-129
356574337		338	PREDICTED: inositol-tetrakisphosphate 1-	0.935	0.860	0.793	1e-127
224081885		319	predicted protein [Populus trichocarpa]	0.900	0.877	0.782	1e-126
224103791		347	predicted protein [Populus trichocarpa]	0.932	0.835	0.807	1e-123
255537904		355	Inositol-tetrakisphosphate 1-kinase, put	0.977	0.856	0.717	1e-119
297836094		373	hypothetical protein ARALYDRAFT_343072 [	0.916	0.764	0.665	1e-118
222624511		349	hypothetical protein OsJ_10020 [Oryza sa	0.993	0.885	0.664	1e-117
242036427		348	hypothetical protein SORBIDRAFT_01g04201	0.993	0.887	0.666	1e-117
115451713		349	Os03g0230500 [Oryza sativa Japonica Grou	0.993	0.885	0.661	1e-116

>gi\|255562182\|ref\|XP_002522099.1\| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi\|223538698\|gb\|EEF40299.1\| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 275/313 (87%), Gaps = 3/313 (0%)

Query: 1   MRLNGEISHKEDEEDEEEKQSGV---LQPERLVVGYALTSKKKKSFLQPKLEILARNKGI 57
           MR+N EIS +E E+ EE K   V    Q + +VVGYALTSKK+KSFLQPKLE LARNKGI
Sbjct: 1   MRINSEISSQEGEDKEEGKTMSVSIQQQQKMVVVGYALTSKKRKSFLQPKLEALARNKGI 60

Query: 58  SFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 117
            FVAID  +PL DQGPFDVVLHKL G +WC++IEDY+QK+PEVT+LDPPDAI+HL NRQS
Sbjct: 61  LFVAIDLKKPLLDQGPFDVVLHKLLGKDWCEVIEDYQQKNPEVTVLDPPDAIQHLSNRQS 120

Query: 118 MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177
           MLQDVADLNL+DC+GKV VPRQMV+ KD  SIP +V +AGLKLPLVAKPLVVDG+AKSHE
Sbjct: 121 MLQDVADLNLADCHGKVCVPRQMVVNKDPSSIPREVSKAGLKLPLVAKPLVVDGTAKSHE 180

Query: 178 LFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVS 237
           LFLAYD FSLSELEPPM+LQEFVNHGG+LFK+YI+GETIKVVRRFSLPNVS  ELAKV  
Sbjct: 181 LFLAYDEFSLSELEPPMVLQEFVNHGGVLFKVYIVGETIKVVRRFSLPNVSNCELAKVAG 240

Query: 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRD 297
           VFRFPRVSSAAASADDA+LDP + ELPPRPLLERLARELR RLGLRLFNIDMIREHG RD
Sbjct: 241 VFRFPRVSSAAASADDANLDPSVGELPPRPLLERLARELRCRLGLRLFNIDMIREHGTRD 300

Query: 298 VFYVIDINYFPGR 310
            FYVIDINYFPG+
Sbjct: 301 RFYVIDINYFPGK 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|351722440\|ref\|NP_001237500.1\| inositol phosphate kinase [Glycine max] gi\|156752167\|gb\|ABU93834.1\| inositol phosphate kinase [Glycine max]	Back alignment and taxonomy information

>gi\|356574337\|ref\|XP_003555305.1\| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224081885\|ref\|XP_002306515.1\| predicted protein [Populus trichocarpa] gi\|222855964\|gb\|EEE93511.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224103791\|ref\|XP_002313195.1\| predicted protein [Populus trichocarpa] gi\|222849603\|gb\|EEE87150.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255537904\|ref\|XP_002510017.1\| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi\|223550718\|gb\|EEF52204.1\| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297836094\|ref\|XP_002885929.1\| hypothetical protein ARALYDRAFT_343072 [Arabidopsis lyrata subsp. lyrata] gi\|297331769\|gb\|EFH62188.1\| hypothetical protein ARALYDRAFT_343072 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|222624511\|gb\|EEE58643.1\| hypothetical protein OsJ_10020 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242036427\|ref\|XP_002465608.1\| hypothetical protein SORBIDRAFT_01g042010 [Sorghum bicolor] gi\|241919462\|gb\|EER92606.1\| hypothetical protein SORBIDRAFT_01g042010 [Sorghum bicolor]	Back alignment and taxonomy information

>gi|115451713|ref|NP_001049457.1| Os03g0230500 [Oryza sativa Japonica Group] gi|33303695|gb|AAQ02374.1| inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa] gi|108706985|gb|ABF94780.1| inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed [Oryza sativa Japonica Group] gi|113547928|dbj|BAF11371.1| Os03g0230500 [Oryza sativa Japonica Group] gi|215704830|dbj|BAG94858.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192383|gb|EEC74810.1| hypothetical protein OsI_10626 [Oryza sativa Indica Group]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		311
TAIR\|locus:2134253		391	AT4G33770 [Arabidopsis thalian	0.916	0.728	0.585	1.8e-85
TAIR\|locus:2132487		353	AT4G08170 [Arabidopsis thalian	0.903	0.796	0.601	2.1e-84
TAIR\|locus:2148990		319	ITPK1 "inositol (1,3,4) P3 5/6	0.652	0.636	0.411	1.4e-44
ZFIN\|ZDB-GENE-040426-1953		396	itpk1 "inositol 1,3,4-triphosp	0.623	0.489	0.314	1.1e-25
UNIPROTKB\|J9NW00		419	ITPK1 "Uncharacterized protein	0.627	0.465	0.314	6.5e-25
UNIPROTKB\|Q5F480		407	ITPK1 "Inositol-tetrakisphosph	0.633	0.484	0.298	1.4e-24
UNIPROTKB\|P0C0T1		419	ITPK1 "Inositol-tetrakisphosph	0.620	0.460	0.306	2.6e-24
RGD\|1595691		421	Itpk1 "inositol-tetrakisphosph	0.620	0.458	0.306	3.5e-24
MGI\|MGI:2446159		419	Itpk1 "inositol 1,3,4-triphosp	0.620	0.460	0.302	5.9e-24
UNIPROTKB\|Q13572		414	ITPK1 "Inositol-tetrakisphosph	0.627	0.471	0.300	1.6e-23

TAIR\|locus:2134253 AT4G33770 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 167/285 (58%), Positives = 203/285 (71%)

Query:    25 QPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM 84
             Q ++LVVGYALTSKKKKSFLQPKLE+LAR KGI FVAID NRPLS+QGPFDVVLHKL G 
Sbjct:    77 QQQKLVVGYALTSKKKKSFLQPKLELLARRKGIFFVAIDLNRPLSEQGPFDVVLHKLLGK 136

Query:    85 EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK 144
             EW ++IEDY+QKHPEVT+LDPP +I+ ++NRQSMLQ +ADL LSDC+G + VP+QMV+ K
Sbjct:   137 EWEEVIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKLSDCSGSLFVPKQMVVLK 196

Query:   145 DSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGG 204
             DS +  D V EAG            DG+AKSH+L+LAYDR SL+EL+PP++LQEFVNHGG
Sbjct:   197 DSAASADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQEFVNHGG 256

Query:   205 ILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXXXXXLDPGIAXXX 264
             ++FK++++G+ IKV+RRFSLPNVS  E AK                     LDP +A   
Sbjct:   257 VMFKVFVVGDVIKVMRRFSLPNVSNCEKAKVDGVFQFPRVSSAAASADNADLDPRVAELP 316

Query:   265 XXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPG 309
                                 FNIDMIREHG ++VFYVIDINYFPG
Sbjct:   317 PKPFLEALVKELRSLLGLRLFNIDMIREHGSKNVFYVIDINYFPG 361

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005622 "intracellular" evidence=IEA

GO:0032957 "inositol trisphosphate metabolic process" evidence=IEA

GO:0047325 "inositol tetrakisphosphate 1-kinase activity" evidence=IEA

GO:0052725 "inositol-1,3,4-trisphosphate 6-kinase activity" evidence=IEA

GO:0052726 "inositol-1,3,4-trisphosphate 5-kinase activity" evidence=IEA

TAIR\|locus:2132487 AT4G08170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148990 ITPK1 "inositol (1,3,4) P3 5/6-kinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1953 itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NW00 ITPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5F480 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0T1 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1595691 Itpk1 "inositol-tetrakisphosphate 1-kinase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2446159 Itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13572 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SUG3	ITPK2_ARATH	2, ., 7, ., 1, ., 1, 5, 9	0.7060	0.9935	0.8753	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1.134	0.991
4th Layer	2.7.1.159	0.991
3rd Layer	2.7.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		311
PLN02941		328	PLN02941, PLN02941, inositol-tetrakisphosphate 1-k	0.0
pfam05770		307	pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trispho	1e-151
pfam13535		183	pfam13535, ATP-grasp_4, ATP-grasp domain	0.002

>gnl\|CDD\|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase	Back alignment and domain information

 Score =  532 bits (1372), Expect = 0.0
 Identities = 204/292 (69%), Positives = 237/292 (81%), Gaps = 3/292 (1%)

Query: 21  SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHK 80
           S   Q +R VVGYALT KK KSFLQP LE LAR+KGI  VAID +RPLS+QGPFDV+LHK
Sbjct: 14  SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHK 73

Query: 81  LSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM 140
           L G EW + +E+YR+KHP+VT+LDPPDAI+ LHNRQSMLQ VADL LSD  G V VP+Q+
Sbjct: 74  LYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQL 133

Query: 141 VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFV 200
           V+  D  SIPD V  AGLK PLVAKPLV DGSAKSH++ LAYD+  LS+LEPP++LQEFV
Sbjct: 134 VVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQEFV 193

Query: 201 NHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD---LD 257
           NHGG+LFK+Y++G+ +K VRRFSLP+VS+ EL+    V  FPRVS+AAASADDAD   LD
Sbjct: 194 NHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLD 253

Query: 258 PGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309
           P +AELPPRP LE LARELR RLGLRLFN DMIREHG  D +YVIDINYFPG
Sbjct: 254 PEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPG 305

Length = 328

>gnl\|CDD\|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate 5/6-kinase	Back alignment and domain information

>gnl\|CDD\|222206 pfam13535, ATP-grasp_4, ATP-grasp domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		311
PF05770		307	Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-	100.0
PLN02941		328	inositol-tetrakisphosphate 1-kinase	100.0
TIGR02144		280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	99.93
PRK10446		300	ribosomal protein S6 modification protein; Provisi	99.93
TIGR00768		277	rimK_fam alpha-L-glutamate ligases, RimK family. T	99.92
COG0189		318	RimK Glutathione synthase/Ribosomal protein S6 mod	99.92
PF08443		190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	99.9
PRK01372		304	ddl D-alanine--D-alanine ligase; Reviewed	99.86
TIGR01205		315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	99.85
PRK14571		299	D-alanyl-alanine synthetase A; Provisional	99.81
TIGR03103		547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	99.81
PRK01966		333	ddl D-alanyl-alanine synthetase A; Reviewed	99.8
PRK14569		296	D-alanyl-alanine synthetase A; Provisional	99.8
TIGR01380		312	glut_syn glutathione synthetase, prokaryotic. This	99.8
PRK14572		347	D-alanyl-alanine synthetase A; Provisional	99.79
PRK05246		316	glutathione synthetase; Provisional	99.78
PRK14568		343	vanB D-alanine--D-lactate ligase; Provisional	99.78
PRK12458		338	glutathione synthetase; Provisional	99.78
PF07478		203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	99.77
PRK14016		727	cyanophycin synthetase; Provisional	99.77
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	99.77
PRK14570		364	D-alanyl-alanine synthetase A; Provisional	99.76
TIGR02068		864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	99.71
TIGR02291		317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	99.71
PRK14573		809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	99.67
COG1181		317	DdlA D-alanine-D-alanine ligase and related ATP-gr	99.63
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	99.62
TIGR01142		380	purT phosphoribosylglycinamide formyltransferase 2	99.61
TIGR01161		352	purK phosphoribosylaminoimidazole carboxylase, Pur	99.61
PRK06019		372	phosphoribosylaminoimidazole carboxylase ATPase su	99.6
PRK12767		326	carbamoyl phosphate synthase-like protein; Provisi	99.59
PF13535		184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	99.56
PRK07206		416	hypothetical protein; Provisional	99.56
PRK06849		389	hypothetical protein; Provisional	99.56
PRK09288		395	purT phosphoribosylglycinamide formyltransferase 2	99.5
PLN02948		577	phosphoribosylaminoimidazole carboxylase	99.49
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	99.49
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.49
PRK05586		447	biotin carboxylase; Validated	99.47
PRK12833		467	acetyl-CoA carboxylase biotin carboxylase subunit;	99.46
PRK08462		445	biotin carboxylase; Validated	99.44
PRK02186		887	argininosuccinate lyase; Provisional	99.44
PLN02735		1102	carbamoyl-phosphate synthase	99.44
PLN02735		1102	carbamoyl-phosphate synthase	99.43
PRK13790		379	phosphoribosylamine--glycine ligase; Provisional	99.43
KOG1057		1018	consensus Arp2/3 complex-interacting protein VIP1/	99.42
TIGR00514		449	accC acetyl-CoA carboxylase, biotin carboxylase su	99.4
PRK08654		499	pyruvate carboxylase subunit A; Validated	99.4
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	99.39
PRK05294		1066	carB carbamoyl phosphate synthase large subunit; R	99.39
TIGR01369		1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.38
PRK08591		451	acetyl-CoA carboxylase biotin carboxylase subunit;	99.37
TIGR01235		1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.35
PRK07178		472	pyruvate carboxylase subunit A; Validated	99.34
PRK08463		478	acetyl-CoA carboxylase subunit A; Validated	99.34
PRK00885		420	phosphoribosylamine--glycine ligase; Provisional	99.33
PRK06524		493	biotin carboxylase-like protein; Validated	99.33
PLN02257		434	phosphoribosylamine--glycine ligase	99.33
PRK06111		450	acetyl-CoA carboxylase biotin carboxylase subunit;	99.31
PF02655		161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	99.29
PRK13789		426	phosphoribosylamine--glycine ligase; Provisional	99.27
PRK12815		1068	carB carbamoyl phosphate synthase large subunit; R	99.26
TIGR00877		423	purD phosphoribosylamine--glycine ligase. This enz	99.25
PRK12999		1146	pyruvate carboxylase; Reviewed	99.21
TIGR02712		1201	urea_carbox urea carboxylase. Members of this fami	99.15
PF15632		329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	99.09
PRK06395		435	phosphoribosylamine--glycine ligase; Provisional	99.08
COG0458		400	CarB Carbamoylphosphate synthase large subunit (sp	99.01
COG0439		449	AccC Biotin carboxylase [Lipid metabolism]	98.99
PF02786		211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	98.98
PF02750		203	Synapsin_C: Synapsin, ATP binding domain; InterPro	98.9
PRK05784		486	phosphoribosylamine--glycine ligase; Provisional	98.88
PF02955		173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	98.83
COG2232		389	Predicted ATP-dependent carboligase related to bio	98.78
COG1821		307	Predicted ATP-utilizing enzyme (ATP-grasp superfam	98.75
PRK13278		358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	98.67
COG0027		394	PurT Formate-dependent phosphoribosylglycinamide f	98.67
PF14398		262	ATPgrasp_YheCD: YheC/D like ATP-grasp	98.62
COG0026		375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	98.58
COG3919		415	Predicted ATP-grasp enzyme [General function predi	98.56
PF02222		172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	98.51
PRK13277		366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	98.45
PF14397		285	ATPgrasp_ST: Sugar-transfer associated ATP-grasp	98.34
PF03133		292	TTL: Tubulin-tyrosine ligase family; InterPro: IPR	98.26
KOG0238		670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.2
COG4770		645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.06
COG1038		1149	PycA Pyruvate carboxylase [Energy production and c	97.82
KOG3895		488	consensus Synaptic vesicle protein Synapsin [Signa	97.67
KOG0369		1176	consensus Pyruvate carboxylase [Energy production	97.39
COG0151		428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	97.39
PF14305		239	ATPgrasp_TupA: TupA-like ATPgrasp	97.29
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071		194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	97.1
TIGR01016		386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	96.8
KOG0370		1435	consensus Multifunctional pyrimidine synthesis pro	96.76
PRK00696		388	sucC succinyl-CoA synthetase subunit beta; Provisi	96.42
KOG2156		662	consensus Tubulin-tyrosine ligase-related protein	96.41
PF14403		445	CP_ATPgrasp_2: Circularly permuted ATP-grasp type	94.94
PF14243		130	DUF4343: Domain of unknown function (DUF4343)	94.64
KOG0368		2196	consensus Acetyl-CoA carboxylase [Lipid transport	93.57
PF07065		299	D123: D123; InterPro: IPR009772 This family contai	93.41
PF13549		222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	90.68
PHA02117		397	glutathionylspermidine synthase domain-containing	89.87
KOG2157		497	consensus Predicted tubulin-tyrosine ligase [Postt	89.74
PRK14046		392	malate--CoA ligase subunit beta; Provisional	81.58
PF08442		202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	81.47

>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase	Back alignment and domain information

Probab=100.00  E-value=1.2e-91  Score=660.07  Aligned_cols=285  Identities=53%  Similarity=0.938  Sum_probs=237.0

Q ss_pred             CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCc
Q 021495           26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP  105 (311)
Q Consensus        26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp  105 (311)
                      +++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++|++|+++||+++||||
T Consensus         5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp   84 (307)
T PF05770_consen    5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP   84 (307)
T ss_dssp             GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred             ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc
Q 021495          106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF  185 (311)
Q Consensus       106 ~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~  185 (311)
                      +++|++|+||.+|++.|++++...+.+.|++|+|+++.++.+++.+.+.+++|+||+||||++||||++||+|+||||++
T Consensus        85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~  164 (307)
T PF05770_consen   85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE  164 (307)
T ss_dssp             HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG
T ss_pred             HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH
Confidence            99999999999999999998776666799999999998667778888899999999999999999999999999999999


Q ss_pred             ccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCC--CCCCCC
Q 021495          186 SLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--PGIAEL  263 (311)
Q Consensus       186 ~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~--p~~~~~  263 (311)
                      ||+++++|||+||||||||++||||||||++++++|+||||++.++.....++|+|+++|+.++.+..+.++  +...++
T Consensus       165 gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~  244 (307)
T PF05770_consen  165 GLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEM  244 (307)
T ss_dssp             GGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS
T ss_pred             HHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccC
Confidence            999999999999999999999999999999999999999999988776667899999999998887776665  455678


Q ss_pred             CChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495          264 PPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR  310 (311)
Q Consensus       264 p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~  310 (311)
                      |+.++++++|++||++|||+|||||||++++|+++||||||||||||
T Consensus       245 p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY  291 (307)
T PF05770_consen  245 PPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGY  291 (307)
T ss_dssp             --HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--T
T ss_pred             CCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCc
Confidence            88999999999999999999999999999999568999999999998

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.

>PLN02941 inositol-tetrakisphosphate 1-kinase	Back alignment and domain information

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX	Back alignment and domain information

>PRK10446 ribosomal protein S6 modification protein; Provisional	Back alignment and domain information

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family	Back alignment and domain information

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []	Back alignment and domain information

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed	Back alignment and domain information

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase	Back alignment and domain information

>PRK14571 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103	Back alignment and domain information

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed	Back alignment and domain information

>PRK14569 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>TIGR01380 glut_syn glutathione synthetase, prokaryotic	Back alignment and domain information

>PRK14572 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>PRK05246 glutathione synthetase; Provisional	Back alignment and domain information

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional	Back alignment and domain information

>PRK12458 glutathione synthetase; Provisional	Back alignment and domain information

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6	Back alignment and domain information

>PRK14016 cyanophycin synthetase; Provisional	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>PRK14570 D-alanyl-alanine synthetase A; Provisional	Back alignment and domain information

>TIGR02068 cya_phycin_syn cyanophycin synthetase	Back alignment and domain information

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein	Back alignment and domain information

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional	Back alignment and domain information

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2	Back alignment and domain information

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein	Back alignment and domain information

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	Back alignment and domain information

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional	Back alignment and domain information

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A	Back alignment and domain information

>PRK07206 hypothetical protein; Provisional	Back alignment and domain information

>PRK06849 hypothetical protein; Provisional	Back alignment and domain information

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated	Back alignment and domain information

>PLN02948 phosphoribosylaminoimidazole carboxylase	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>PRK05586 biotin carboxylase; Validated	Back alignment and domain information

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional	Back alignment and domain information

>PRK08462 biotin carboxylase; Validated	Back alignment and domain information

>PRK02186 argininosuccinate lyase; Provisional	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>PLN02735 carbamoyl-phosphate synthase	Back alignment and domain information

>PRK13790 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]	Back alignment and domain information

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit	Back alignment and domain information

>PRK08654 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit	Back alignment and domain information

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>TIGR01235 pyruv_carbox pyruvate carboxylase	Back alignment and domain information

>PRK07178 pyruvate carboxylase subunit A; Validated	Back alignment and domain information

>PRK08463 acetyl-CoA carboxylase subunit A; Validated	Back alignment and domain information

>PRK00885 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK06524 biotin carboxylase-like protein; Validated	Back alignment and domain information

>PLN02257 phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated	Back alignment and domain information

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []	Back alignment and domain information

>PRK13789 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed	Back alignment and domain information

>TIGR00877 purD phosphoribosylamine--glycine ligase	Back alignment and domain information

>PRK12999 pyruvate carboxylase; Reviewed	Back alignment and domain information

>TIGR02712 urea_carbox urea carboxylase	Back alignment and domain information

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon	Back alignment and domain information

>PRK06395 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]	Back alignment and domain information

>COG0439 AccC Biotin carboxylase [Lipid metabolism]	Back alignment and domain information

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)	Back alignment and domain information

>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments)	Back alignment and domain information

>PRK05784 phosphoribosylamine--glycine ligase; Provisional	Back alignment and domain information

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6	Back alignment and domain information

>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]	Back alignment and domain information

>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]	Back alignment and domain information

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional	Back alignment and domain information

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]	Back alignment and domain information

>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp	Back alignment and domain information

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]	Back alignment and domain information

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]	Back alignment and domain information

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Back alignment and domain information

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional	Back alignment and domain information

>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp	Back alignment and domain information

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed	Back alignment and domain information

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]	Back alignment and domain information

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	Back alignment and domain information

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp	Back alignment and domain information

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6	Back alignment and domain information

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit	Back alignment and domain information

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]	Back alignment and domain information

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional	Back alignment and domain information

>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2	Back alignment and domain information

>PF14243 DUF4343: Domain of unknown function (DUF4343)	Back alignment and domain information

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]	Back alignment and domain information

>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long	Back alignment and domain information

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A	Back alignment and domain information

>PHA02117 glutathionylspermidine synthase domain-containing protein	Back alignment and domain information

>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14046 malate--CoA ligase subunit beta; Provisional	Back alignment and domain information

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		311
2q7d_A		346	Crystal Structure Of Human Inositol 1,3,4-Trisphosp		6e-22
2qb5_A		347	Crystal Structure Of Human Inositol 1,3,4-Trisphosp		6e-22
2odt_X		328	Structure Of Human Inositol 1,3,4-Trisphosphate 56-		6e-21
1z2n_X		324	Inositol 1,3,4-trisphosphate 5/6-kinase Complexed M		4e-05

>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Amppnp And Mn2+ Length = 346

Back alignment and structure

Iteration: 1

Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%) Query: 31 VGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS-------- 82 VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+ Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 80 Query: 83 ----GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 138 +E ++Y HPE +LDP AI+ L +R + + + + ++ P Sbjct: 81 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140 Query: 139 QMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQE 198 M +T ++ E SHE+ + +++ L+ ++PP ++Q Sbjct: 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQN 200 Query: 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVS 228 F+NH +L+K++++GE+ VV+R SL N S Sbjct: 201 FINHNAVLYKVFVVGESYTVVQRPSLKNFS 230

PyMOL of 2q7d

>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Adp And Mn2+ Length = 347

Back alignment and structure

>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase Length = 328

Back alignment and structure

>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp Length = 324

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		311
2q7d_A		346	Inositol-tetrakisphosphate 1-kinase; inositol kina	1e-97
1z2n_X		324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	2e-88
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1uc8_A		280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	5e-04
2pn1_A		331	Carbamoylphosphate synthase large subunit; ZP_0053	8e-04

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346	Back alignment and structure

 Score =  290 bits (744), Expect = 1e-97
 Identities = 91/299 (30%), Positives = 150/299 (50%), Gaps = 17/299 (5%)

Query: 26  PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLS--- 82
            +   VGY L+ KK K         L R +G+  V ++ +RP+ +QGP DV++HKL+   
Sbjct: 16  LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVI 75

Query: 83  ---------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 133
                     +E     ++Y   HPE  +LDP  AI+ L +R    + +  +     + +
Sbjct: 76  LEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDR 135

Query: 134 VRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEP 192
           +  P  M +T          + + GL  P + K  V  G+  SHE+ + +++  L+ ++P
Sbjct: 136 ICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQP 194

Query: 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252
           P ++Q F+NH  +L+K++++GE+  VV+R SL N S     +    F    VS   +S+ 
Sbjct: 195 PCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSV 254

Query: 253 DADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309
             +LD   G+ E P   ++  L+R LR  LG+ LF ID+I  +       VIDIN FPG
Sbjct: 255 LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDINAFPG 312

PyMOL of 2q7d

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280	Back alignment and structure

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		311
2q7d_A		346	Inositol-tetrakisphosphate 1-kinase; inositol kina	100.0
1z2n_X		324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	100.0
3t7a_A		330	Inositol pyrophosphate kinase; ATP-grAsp fold, tra	99.95
1i7n_A		309	Synapsin II; synapse, phosphorylation, neuropeptid	99.94
2p0a_A		344	Synapsin-3, synapsin III; neurotransmitter release	99.93
1pk8_A		422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	99.92
1uc8_A		280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	99.89
4eg0_A		317	D-alanine--D-alanine ligase; structural genomics,	99.88
3r5x_A		307	D-alanine--D-alanine ligase; alpha-beta structure,	99.88
3se7_A		346	VANA; alpha-beta structure, D-alanine-D-lactate li	99.87
1iow_A		306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	99.87
4fu0_A		357	D-alanine--D-alanine ligase 7; vancomycin resistan	99.83
3tqt_A		372	D-alanine--D-alanine ligase; cell envelope; 1.88A	99.82
3k3p_A		383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	99.82
1ehi_A		377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	99.82
2i87_A		364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	99.82
1e4e_A		343	Vancomycin/teicoplanin A-type resistance protein;	99.81
3e5n_A		386	D-alanine-D-alanine ligase A; bacterial blight; 2.	99.8
2fb9_A		322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	99.8
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	99.79
3i12_A		364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	99.79
3lwb_A		373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	99.76
2pvp_A		367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	99.76
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	99.75
1gsa_A		316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	99.71
3q2o_A		389	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.68
3k5i_A		403	Phosphoribosyl-aminoimidazole carboxylase; purine	99.67
3ax6_A		380	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.66
3orq_A		377	N5-carboxyaminoimidazole ribonucleotide synthetas;	99.66
4ffl_A		363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	99.64
3vot_A		425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	99.64
3aw8_A		369	PURK, phosphoribosylaminoimidazole carboxylase, AT	99.63
2z04_A		365	Phosphoribosylaminoimidazole carboxylase ATPase su	99.61
1kjq_A		391	GART 2, phosphoribosylglycinamide formyltransferas	99.59
2dwc_A		433	PH0318, 433AA long hypothetical phosphoribosylglyc	99.58
4dim_A		403	Phosphoribosylglycinamide synthetase; structural g	99.58
4e4t_A		419	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.57
3df7_A		305	Putative ATP-grAsp superfamily protein; putative p	99.57
3eth_A		355	Phosphoribosylaminoimidazole carboxylase ATPase su	99.55
2r85_A		334	PURP protein PF1517; ATP-grAsp superfamily, unknow	99.54
2pn1_A		331	Carbamoylphosphate synthase large subunit; ZP_0053	99.53
3lp8_A		442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	99.47
3vmm_A		474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	99.47
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	99.46
3mjf_A		431	Phosphoribosylamine--glycine ligase; structural ge	99.46
2yw2_A		424	Phosphoribosylamine--glycine ligase; glycinamide r	99.45
2ip4_A		417	PURD, phosphoribosylamine--glycine ligase; GAR syn	99.45
1a9x_A		1073	Carbamoyl phosphate synthetase (large chain); amid	99.44
2xcl_A		422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	99.43
1vkz_A		412	Phosphoribosylamine--glycine ligase; TM1250, struc	99.43
2vpq_A		451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	99.41
2yrx_A		451	Phosphoribosylglycinamide synthetase; glycinamide	99.41
3ouz_A		446	Biotin carboxylase; structural genomics, center fo	99.41
2qk4_A		452	Trifunctional purine biosynthetic protein adenosi;	99.39
3glk_A		540	Acetyl-COA carboxylase 2; ATP binding, alternative	99.38
2dzd_A		461	Pyruvate carboxylase; biotin carboxylase, ligase;	99.37
1ulz_A		451	Pyruvate carboxylase N-terminal domain; biotin car	99.37
3jrx_A		587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	99.36
2w70_A		449	Biotin carboxylase; ligase, ATP-binding, fatty aci	99.35
3hbl_A		1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.33
1w96_A		554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	99.29
3n6r_A		681	Propionyl-COA carboxylase, alpha subunit; protein	99.28
3u9t_A		675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.26
3va7_A		1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.24
2qf7_A		1165	Pyruvate carboxylase protein; multi-domain, multi-	99.18
2pbz_A		320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	99.0
2r7k_A		361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	98.75
2cqy_A		108	Propionyl-COA carboxylase alpha chain, mitochondri	98.66
3tig_A		380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	98.34
1wr2_A		238	Hypothetical protein PH1789; structural genomics,	98.16
3ufx_B		397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	97.32
2nu8_B		388	SCS-beta, succinyl-COA synthetase beta chain; citr	97.29
2io8_A		619	Bifunctional glutathionylspermidine synthetase/ami	97.03
2fp4_B		395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	96.91
3n6x_A		474	Putative glutathionylspermidine synthase; domain o	92.02
2vob_A		652	Trypanothione synthetase; ligase; 2.3A {Leishmania	90.09
3mwd_A		425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	86.55

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X	Back alignment and structure

Probab=100.00  E-value=5.9e-60  Score=453.36  Aligned_cols=281  Identities=32%  Similarity=0.557  Sum_probs=238.6

Q ss_pred             CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCC------------hhHHHHHHHH
Q 021495           26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCKIIEDY   93 (311)
Q Consensus        26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~------------~~~~~~l~~y   93 (311)
                      +++++|||||++||.++|++++|+++++++|++++.||++.++.+|++||+||||+++            ..|.+.|++|
T Consensus        16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~   95 (346)
T 2q7d_A           16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEY   95 (346)
T ss_dssp             GTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999987            3678889999


Q ss_pred             HHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCCcchhhHhcCCCCcEEEeeCcCCCC
Q 021495           94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPLVVDGS  172 (311)
Q Consensus        94 ~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~-~~~~~~~l~~~~l~fP~VvKP~~a~GS  172 (311)
                      ...||+++||||+.+|+.|.||+.|++.|+++.......+|++|+++++.+. .++..+.+...+++||+|+||+.++||
T Consensus        96 ~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs  175 (346)
T 2q7d_A           96 IDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT  175 (346)
T ss_dssp             HHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSST
T ss_pred             HHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcc
Confidence            9999999999999999999999999999998644334468999999999643 234444455678999999999999999


Q ss_pred             CcceeeEEEcCccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecc--ccccccc
Q 021495          173 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VSSAAAS  250 (311)
Q Consensus       173 ~~sh~m~lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~--vs~~~~~  250 (311)
                      . +|+|++|++.++|+.++.|+|+||||+|+|++|||||||+++++++|+|+|+|+.+.  +..++|+|.+  +++++..
T Consensus       176 ~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g~~  252 (346)
T 2q7d_A          176 N-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPESS  252 (346)
T ss_dssp             T-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCC
T ss_pred             e-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCCcc
Confidence            7 999999999999999999999999999999999999999999999999999987654  2357888876  6766544


Q ss_pred             CCCCCCCC--CCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495          251 ADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR  310 (311)
Q Consensus       251 a~~~~~~p--~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~  310 (311)
                      +.....++  ..+++++.++++++|.+++++||+++||||+|++.++| +|||+|||+||||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~  313 (346)
T 2q7d_A          253 SVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGY  313 (346)
T ss_dssp             CGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCC
T ss_pred             ccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccc
Confidence            32222111  12456778899999999999999999999999986455 6999999999998

PyMOL of 2q7d

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*	Back alignment and structure

>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*	Back alignment and structure

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*	Back alignment and structure

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}	Back alignment and structure

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*	Back alignment and structure

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*	Back alignment and structure

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A	Back alignment and structure

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*	Back alignment and structure

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}	Back alignment and structure

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*	Back alignment and structure

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}	Back alignment and structure

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}	Back alignment and structure

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}	Back alignment and structure

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1	Back alignment and structure

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*	Back alignment and structure

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*	Back alignment and structure

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*	Back alignment and structure

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*	Back alignment and structure

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}	Back alignment and structure

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A	Back alignment and structure

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*	Back alignment and structure

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*	Back alignment and structure

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}	Back alignment and structure

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A	Back alignment and structure

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*	Back alignment and structure

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}	Back alignment and structure

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}	Back alignment and structure

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*	Back alignment and structure

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*	Back alignment and structure

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}	Back alignment and structure

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A	Back alignment and structure

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}	Back alignment and structure

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*	Back alignment and structure

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*	Back alignment and structure

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}	Back alignment and structure

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}	Back alignment and structure

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A	Back alignment and structure

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A	Back alignment and structure

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}	Back alignment and structure

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*	Back alignment and structure

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*	Back alignment and structure

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}	Back alignment and structure

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A	Back alignment and structure

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*	Back alignment and structure

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}	Back alignment and structure

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A	Back alignment and structure

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}	Back alignment and structure

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2	Back alignment and structure

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*	Back alignment and structure

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...	Back alignment and structure

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*	Back alignment and structure

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A	Back alignment and structure

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}	Back alignment and structure

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}	Back alignment and structure

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*	Back alignment and structure

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9	Back alignment and structure

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*	Back alignment and structure

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*	Back alignment and structure

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}	Back alignment and structure

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}	Back alignment and structure

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*	Back alignment and structure

>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*	Back alignment and structure

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*	Back alignment and structure

>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}	Back alignment and structure

>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A	Back alignment and structure

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		311
d1i7na2		206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	99.77
d1uc8a2		192	Lysine biosynthesis enzyme LysX ATP-binding domain	99.72
d1e4ea2		211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	99.69
d1ehia2		228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	99.67
d1iowa2		210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	99.67
d1gsaa2		192	Prokaryotic glutathione synthetase, C-domain {Esch	99.46
d2r7ka2		238	5-formaminoimidazole-4-carboxamide ribonucleotide	99.29
d1a9xa6		259	Carbamoyl phosphate synthetase (CPS), large subuni	99.21
d1a9xa5		275	Carbamoyl phosphate synthetase (CPS), large subuni	99.2
d1vkza3		220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.19
d2r85a2		235	5-formaminoimidazole-4-carboxamide ribonucleotide	99.18
d1ulza3		214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	99.11
d3etja3		198	N5-carboxyaminoimidazole ribonucleotide synthetase	99.09
d1w96a3		267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	99.07
d1kjqa3		206	Glycinamide ribonucleotide transformylase PurT, do	99.02
d2j9ga3		216	Biotin carboxylase (BC), domain 2 {Escherichia col	98.95
d1gsoa3		224	Glycinamide ribonucleotide synthetase (GAR-syn), d	98.79
d1uc8a1		88	Lysine biosynthesis enzyme LysX, N-terminal domain	97.52
d2nu7b2		238	Succinyl-CoA synthetase, beta-chain, N-terminal do	86.86
d1eucb2		246	Succinyl-CoA synthetase, beta-chain, N-terminal do	83.83

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.6e-18  Score=149.93  Aligned_cols=170  Identities=10%  Similarity=0.109  Sum_probs=110.1

Q ss_pred             CchhHHHHhcCHHHHHHHHHh--ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEE
Q 021495          104 DPPDAIKHLHNRQSMLQDVAD--LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA  181 (311)
Q Consensus       104 Dp~~ai~~l~dR~~~l~~l~~--l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv  181 (311)
                      |++++|+.|.||..++..+..  -.++.  .+++++......    ...+  .....+||+|+||..++   +|+++.+|
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~--~~~p~~~~~~~~----~~~~--~~~~~~~PvVvKP~~g~---~g~Gv~~v   69 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLGG--EKFPLIEQTYYP----NHRE--MLTLPTFPVVVKIGHAH---SGMGKVKV   69 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHCT--TTSCBCCCEEES----SGGG--GSSCCCSSEEEEESSCS---TTTTEEEE
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccCC--Cccceeeccccc----chhH--HhhhcCCceEEecCCCC---CCCCeEEE
Confidence            689999999999644322211  11111  244554432221    1111  23467899999998844   36889999


Q ss_pred             cCccccccC-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCC
Q 021495          182 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA  254 (311)
Q Consensus       182 ~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~  254 (311)
                      .++++|...       ..++++||||+ ++++++|+|+|+++..+.|++..+    +|.++.        ..      +.
T Consensus        70 ~~~~~l~~~~~~~~~~~~~~~vqe~I~-~~~dirv~vig~~~~~~~~~~~~~----~~~~n~--------~~------~~  130 (206)
T d1i7na2          70 ENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKTNT--------GS------AM  130 (206)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCT----TTSCSC--------CC------SS
T ss_pred             eecchhhhHHHHHhhccCeEEEEEeec-ccceEEEEEEecceeEEEeecccc----cccccc--------cc------Cc
Confidence            999888653       67999999996 368999999999999887776442    333220        00      00


Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495          255 DLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINYFPGR  310 (311)
Q Consensus       255 ~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~  310 (311)
                      ...+    .+ .+..++++....+.+ ++.+.|||++.+. .| ++||+|||..|+.
T Consensus       131 ~~~~----~~-~~~~~~~~~~~~~~~~~~~~~gvD~~~~~-dG-~~yvlEvN~~~~~  180 (206)
T d1i7na2         131 LEQI----AM-SDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMP  180 (206)
T ss_dssp             EEEE----CC-CHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCC
T ss_pred             cccc----cC-ChHHHHHHHHHhhhccccceeeEEEEEcC-CC-CEEEEEEcCCCcc
Confidence            1111    11 234556666666665 5799999999985 45 7999999987753

PyMOL of d1i7na2

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}	Back information, alignment and structure

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}	Back information, alignment and structure

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}	Back information, alignment and structure

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure