Citrus Sinensis ID: 021510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQLPLPLGKV
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEccccccccccEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEcccccccccccccccccEEEEEcccccccccccHHHcccccccEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcHHEEEEcccHcHHHHHccccccEEcccccEEEEcccHHHHHHccccHHHHcccccEEEEEccccHHHEEcccccccccccEEEccccccEEcccccccEEEccccccccccccccccccEEEEEccccEEEEEccccccccccccccccEEEEEccccEEEccccccccccccccccEEEEEEcccccHHcccHHHHHHHHHHcEEEEcccHHHHHHEcccccccccccEEcccccEEEEcccccccEcccccccccccccEEEEEEcccccEEEcccccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
mvgcdafpLLQSLILHNLINMERLCIDRLKvesfnqlknieayncdklsnifwfsttkclprlerIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSlslgnlpevtsfccevetpsaspnrqvsqeestamycsSEITLDISTLLfnekvalpnlevleiseinvdqiwhynhlpvtfprfqNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIIsenrtdqvipyfvfpqlttlklqdlpklrclypgmhssewpALEILLVYGCDKLKIFAADLsqnnendqlgipaqqlplplgkv
Flexible Loop (DISEMBL)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIeayncdklsniFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVEtpsaspnrqvsqEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIIsenrtdqviPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNEndqlgipaqqlplplgkv
Low Complexity Region (SEG)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQLPLPLGKV
Disordered region (IsUnstruct)
**GCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV******************MYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL***********************
Disordered Region (DISOPRED)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQE**************VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKI*******************QLPLPLGKV
Disordered Region (DISEMBL)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV******************MYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQLPLPLGKV
Disordered Region (DISPRO)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQ****DQLGIPAQQLPLPLG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQLPLPLGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.389	0.133	0.307	2e-08
O81825	919	Probable disease resistan	no	no	0.395	0.133	0.330	4e-05
O64973	889	Disease resistance protei	no	no	0.398	0.139	0.282	0.0004

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 77/130 (59%), Gaps = 9/130 (6%)

Query: 154 LPNLEVLEISEI-NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQL 212
           LP+LEVL +  + N+ ++W  +   V+    +N+  + + HC+KLK +   S ++ L +L
Sbjct: 744 LPSLEVLTLHSLHNLTRVWGNS---VSQDCLRNIRCINISHCNKLKNV---SWVQKLPKL 797

Query: 213 QRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEI 272
           + +E+  C +++E+ISE+ +  V    +FP L TL+ +DLP+L  + P   S  +  +E 
Sbjct: 798 EVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFS--FQKVET 855

Query: 273 LLVYGCDKLK 282
           L++  C ++K
Sbjct: 856 LVITNCPRVK 865

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIR-SLKQL 212
            PNLE L +  +N++ I   N       R Q L  L V  C +LK +FS  ++  +L  L
Sbjct: 767 FPNLEELSLDNVNLESIGELNGF--LGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNL 824

Query: 213 QRLEICSCEDLQEIISENRTDQVIPY---FVFPQLTTLKLQDLPKLRCLYPGMHSSEWPA 269
           Q +++ SC  L+E+   N +   + +    + P+LT +KL+ LP+LR L       E  +
Sbjct: 825 QEIKVVSCLRLEELF--NFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLE--S 880

Query: 270 LEILLVYGCDKLK 282
           LE L V  C+ LK
Sbjct: 881 LEHLEVESCESLK 893

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 14/138 (10%)

Query: 174 NHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233
           N  P T P F NL+R+ +  CH LK +   + +     L  LE+   +++++IISE + +
Sbjct: 736 NKSPTT-PCFSNLSRVFIAKCHGLKDL---TWLLFAPNLTFLEVGFSKEVEDIISEEKAE 791

Query: 234 QVIPYFV-FPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNN 292
           +     V F +L TL L +L  L+ +Y    +  +P L+++ V  C+KL+    D     
Sbjct: 792 EHSATIVPFRKLETLHLFELRGLKRIYA--KALHFPCLKVIHVEKCEKLRKLPLD----- 844

Query: 293 ENDQLGIPAQQLPLPLGK 310
              + GI  ++L +  G+
Sbjct: 845 --SKSGIAGEELVIYYGE 860

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.929	0.122	0.386	9e-44
296087872	1152	unnamed protein product [Vitis vinifera]	0.887	0.239	0.328	4e-38
353685492	2756	Rpp4C3 [Phaseolus vulgaris]	0.839	0.094	0.393	5e-38
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.884	0.209	0.377	9e-38
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.858	0.199	0.382	3e-37
255563252	1603	Disease resistance protein RPS5, putativ	0.903	0.175	0.333	4e-35
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.813	0.221	0.388	3e-34
353685480	2629	Rpp4C4 [Phaseolus vulgaris]	0.858	0.101	0.388	3e-34
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.858	0.199	0.364	2e-33
353685494	2654	Rpp4C1 [Phaseolus vulgaris]	0.868	0.101	0.366	6e-33

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 16/305 (5%)

Query: 1    MVGCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCL 60
            MV  +AFP+L+SLIL++L +++++C   L+VESF +L+ I   +C+KL+N+F F   + L
Sbjct: 778  MVSSNAFPILESLILYDLSSLKKICHGALRVESFAKLRIIAVEHCNKLTNLFSFFVARGL 837

Query: 61   PRLERIAVINCSKMKEIFSIGEEVD------NAIEKIEFAQLRSLSLGNLPEVTSFCCEV 114
             +L++I +  C KM+E+  + EE D        ++ I+F QL SLSL  LP + +F  +V
Sbjct: 838  SQLQKIKIAFCMKMEEV--VAEESDELGDQNEVVDVIQFTQLYSLSLQYLPHLMNFYSKV 895

Query: 115  ETPSAS---PNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIW 171
            +  S S   P   +++  S  +   SE  L   T LFNEK+  PNLE L +  IN+D++W
Sbjct: 896  KPSSLSRTQPKPSITEARSEEII--SEDELRTPTQLFNEKILFPNLEDLNLYAINIDKLW 953

Query: 172  HYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIIS-EN 230
            +  H P      QNL RL+V  C  LKY+F +S++  L QL+ L I +C  ++EII+   
Sbjct: 954  NDQH-PSISVSIQNLQRLVVNQCGSLKYLFPSSLVNILVQLKHLSITNCMSVEEIIAIGG 1012

Query: 231  RTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQ 290
              ++     VFP+L  ++L DLPKLR    G  S E P L+ + +  C + K FAAD S 
Sbjct: 1013 LKEEETTSTVFPKLEFMELSDLPKLRRFCIG-SSIECPLLKRMRICACPEFKTFAADFSC 1071

Query: 291  NNEND 295
             N ND
Sbjct: 1072 ANIND 1076

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 172/326 (52%), Gaps = 50/326 (15%)

Query: 6   AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
           AFP+L+SL L+ LIN++ +C  +L V SF+ L+ ++   CD L  +F  S  + L RLE+
Sbjct: 616 AFPVLESLFLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEK 675

Query: 66  IAVINCSKMKEIFSIG-EEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQ 124
           I +  C  M ++ + G E+ D+A++ I FA+LR L+L +LP++ +FC E +T  ++  R 
Sbjct: 676 IEITRCKNMYKMVAQGKEDGDDAVDAILFAELRYLTLQHLPKLRNFCLEGKTMPSTTKRS 735

Query: 125 VSQEESTAMYCSSEITLDISTLLFNEKVALPNL-------------------------EV 159
            +        C SE  LD  T +FN+ V   ++                         EV
Sbjct: 736 PTTNVRFNGIC-SEGELDNQTSVFNQLVCHSSIILSNYMLKRLQSLQFLKAVDCSSLEEV 794

Query: 160 LEISEIN--------------------VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKY 199
            ++  IN                    V QIW  N  P     FQNL  +++  C  LK 
Sbjct: 795 FDMEGINVKEAVAVTQLSKLILQFLPKVKQIW--NKEPRGILTFQNLKSVMIDQCQSLKN 852

Query: 200 IFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY 259
           +F AS++R L QLQ L++ SC  ++ I++++   +    FVFP++T+L+L  L +LR  Y
Sbjct: 853 LFPASLVRDLVQLQELQVWSC-GIEVIVAKDNGVKTAAKFVFPKVTSLRLSHLHQLRSFY 911

Query: 260 PGMHSSEWPALEILLVYGCDKLKIFA 285
           PG H+S+WP L+ L V+ C ++ +FA
Sbjct: 912 PGAHTSQWPLLKELKVHECPEVDLFA 937

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685492|gb|AER13169.1| Rpp4C3 [Phaseolus vulgaris]

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 167/292 (57%), Gaps = 31/292 (10%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
            AFP L+S+ L+ L N+E++C ++L  +SF +LK I+   CD+L NIF FS  +C   +ER
Sbjct: 861  AFPKLESMCLYKLDNLEKICDNKLTKDSFRRLKIIKIKTCDQLKNIFSFSMIECFGMVER 920

Query: 66   IAVINCSKMKEIFSIGEEV--DNAIE--KIEFAQLRSLSLGNLPEVTSFCC---EVETPS 118
            I   +C+ +KEI SI  E   DNAIE  K+EF QLR L+L +LP   SFCC     +TP 
Sbjct: 921  IEACDCNSLKEIVSIEGESSNDNAIEADKVEFPQLRFLTLQSLP---SFCCLYTNNKTPF 977

Query: 119  AS-------PNRQVSQEES-TAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI 170
             S       PN+++ Q  + +  Y +  ++      LFNEKV++P LE LE+S IN+ QI
Sbjct: 978  ISQSFEDQVPNKELKQITTVSGQYNNGFLS------LFNEKVSIPKLEWLELSSINIRQI 1031

Query: 171  WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN 230
            W+       F  FQNL +L V  C  LKY+ S     SL  LQ L +  CE +++I S  
Sbjct: 1032 WNDQ----CFHSFQNLLKLNVSDCENLKYLLSFPTAGSLVNLQSLFVSGCELMEDIFSTT 1087

Query: 231  RTDQVIPYFVFPQLTTLKLQDLPKLRCLY-PGMHSSEWPALEILLVYGCDKL 281
               Q I   +FP+L  +++  + KL  ++ P M  + +  L+ L+V  CDKL
Sbjct: 1088 DATQNID--IFPKLKEMEINCMKKLNTIWQPHMGFNSFHCLDSLIVRECDKL 1137

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 164/286 (57%), Gaps = 11/286 (3%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
            AF  L SL L NL N+E++C  +L  ES   L+ ++  +C +L N+F  S  + L RLE 
Sbjct: 791  AFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVRLEE 850

Query: 66   IAVINCSKMKEIFSIGEEVDNAIEK--IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNR 123
            I +I+C  M+E+ +   E D A  +  IEF QLR L+L  LP+ TSF   VE  S S  R
Sbjct: 851  ITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLPQFTSFHSNVEESSDSQRR 910

Query: 124  Q---VSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTF 180
            Q    S+  S  +   +E+   +S  LFN K+  PNLE L++S I V++IWH +   V  
Sbjct: 911  QKLLASEARSKEIVAGNELGTSMS--LFNTKILFPNLEDLKLSSIKVEKIWH-DQPSVQS 967

Query: 181  PRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEII--SENRTDQVIPY 238
            P  +NL  + V +C  L Y+ ++SM+ SL QL++LEIC+C+ ++EI+   +    +++  
Sbjct: 968  PCVKNLASIAVENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEEIVVPEDIGEGKMMSK 1027

Query: 239  FVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIF 284
             +FP+L  L L  LPKL   +   +  E  +L++L V  C +LK F
Sbjct: 1028 MLFPKLLILSLIRLPKL-TRFCTSNLLECHSLKVLTVGNCPELKEF 1072

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 163/285 (57%), Gaps = 18/285 (6%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
            AF  L SL L NL N+E++C  +L  ES  +L+ ++  +C +L N+F  S  + L RLE 
Sbjct: 791  AFLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVRLEE 850

Query: 66   IAVINCSKMKEIFSIGEEVDNA-IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQ 124
            I +I+C  M+E+ +   E D A  E IEFAQLR L+L  LP+ TSF         S  RQ
Sbjct: 851  ITIIDCKIMEEVVAEESENDTADGEPIEFAQLRRLTLQCLPQFTSF--------HSNRRQ 902

Query: 125  ---VSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFP 181
                S   S  +   +E+   +S  LFN K+  PNLE L++S I V++IWH +   V  P
Sbjct: 903  KLLASDVRSKEIVAGNELGTSMS--LFNTKILFPNLEDLKLSSIKVEKIWH-DQPAVQPP 959

Query: 182  RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ--VIPYF 239
              +NL  ++V  C  L Y+ ++SM+ SL QL+RLEIC+CE ++EI+      +  ++   
Sbjct: 960  CVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICNCESMEEIVVPEGIGEGKMMSKM 1019

Query: 240  VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIF 284
            +FP+L  L+L  LPKL   +   +  E  +L++L+V  C +LK F
Sbjct: 1020 LFPKLHLLELSGLPKL-TRFCTSNLLECHSLKVLMVGNCPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 170/303 (56%), Gaps = 22/303 (7%)

Query: 4    CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRL 63
            C+AFP+L+SL L NL+++E++C  +L   SF++L+++    CD+L N+F FS  +CL +L
Sbjct: 795  CNAFPILESLYLDNLMSLEKICCGKLTTGSFSKLRSLTVVKCDRLKNLFSFSMMRCLLQL 854

Query: 64   ERIAVINCSKMKEIFSIG-EEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPN 122
            +++ V++C+ ++EI + G E+ DN  E ++  QL SL+L  LP   SFC + +    S  
Sbjct: 855  QQMKVVDCANLEEIVACGSEDTDNDYEAVKLTQLCSLTLKRLPMFKSFCSKKKVSPISLR 914

Query: 123  RQVSQEESTAMY-CSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFP 181
             Q      T +   + +  L     LFNE    PNLE LE+S I  ++I       ++  
Sbjct: 915  VQKQLTTDTGLKEIAPKGELGDPLPLFNEMFCFPNLENLELSSIACEKICDDQLSAIS-- 972

Query: 182  RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDL------QEIISENRTDQV 235
               NL  LIV  C  LKY+F++S++++L  L+RLE+  C  +      +E++ E R  + 
Sbjct: 973  --SNLMSLIVERCWNLKYLFTSSLVKNLLLLKRLEVFDCMSVEGIIVAEELVEEERNRKK 1030

Query: 236  IPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIF-----AADLSQ 290
            +    FP+L  LKL++LP +     G +  E+ +L  LL+  C  L +F     +AD+ +
Sbjct: 1031 L----FPELDFLKLKNLPHITRFCDG-YPVEFSSLRKLLIENCPALNMFVSKSPSADMIE 1085

Query: 291  NNE 293
            + E
Sbjct: 1086 SRE 1088

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/265 (38%), Positives = 156/265 (58%), Gaps = 12/265 (4%)

Query: 7    FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERI 66
            FP+L+SL L+NL+++E+LC   L  ESF +L  IE  NC KL ++F FS  + L +L+ I
Sbjct: 796  FPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIEVGNCVKLKHLFPFSVARGLSQLQTI 855

Query: 67   AVINCSKMKEIFS-IGEEVDNA---IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPN 122
             +  C  M+E+ +  G+E +++   I+ +EF QL SLSL  LP + +FC   E  S    
Sbjct: 856  NISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLSSLSLQCLPHLKNFCSR-EKTSRLCQ 914

Query: 123  RQVSQEESTAMYCSSEITLDIST---LLFNEKVALPNLEVLEISEINVDQIWHYN-HLPV 178
             Q++   ++    S EI+ D       LF EK+ +P L+ LE+  INV++IWH   H   
Sbjct: 915  AQLNPVATSVGLQSKEISEDEPRNPLQLFCEKILIPKLKKLELVSINVEKIWHGQLHREN 974

Query: 179  TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD--QVI 236
            TFP  QNL  L V  CH LKY+FS SM++SL QL+ L + +C+ ++EIIS    +  +++
Sbjct: 975  TFP-VQNLQTLYVDDCHSLKYLFSPSMVKSLVQLKYLTVRNCKSMEEIISVEGVEEGEMM 1033

Query: 237  PYFVFPQLTTLKLQDLPKLRCLYPG 261
                F +L  ++L DLP+L     G
Sbjct: 1034 SEMCFDKLEDVELSDLPRLTWFCAG 1058

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685480|gb|AER13157.1| Rpp4C4 [Phaseolus vulgaris]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/286 (38%), Positives = 160/286 (55%), Gaps = 19/286 (6%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
            AFP L+S+ L+ L N+E++C ++L  +SF +LK I+   CD+  +IF FS  +C   LER
Sbjct: 860  AFPKLESMCLYKLDNLEKICDNKLTKDSFRRLKIIKIKTCDQFKSIFSFSMIECFGMLER 919

Query: 66   IAVINCSKMKEIFSI-GEEVD-NAIE--KIEFAQLRSLSLGNLPEVTSFCC---EVETP- 117
            I   +C  +KEI S+ GE  + NAIE  K+EF QLR L+L +LP   SFCC     +TP 
Sbjct: 920  IEACDCDSLKEIVSVEGESCNVNAIEADKVEFPQLRFLTLQSLP---SFCCLYTNDKTPF 976

Query: 118  -SASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHL 176
             S S   QV  +E   +   S    +    LFNEKV++P LE LE+S IN+ QIW+    
Sbjct: 977  ISQSFEDQVPNKEFKEITTVSGQYNNGFLSLFNEKVSIPKLEWLELSSINIRQIWN---- 1032

Query: 177  PVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI 236
               F  FQNL +L V  C  LKY+ S     +L  LQ L +  CE +++I S     Q I
Sbjct: 1033 DQCFHSFQNLLKLNVSDCENLKYLLSFPTAGNLVNLQSLFVSGCELMEDIFSTTDATQNI 1092

Query: 237  PYFVFPQLTTLKLQDLPKLRCLYPG-MHSSEWPALEILLVYGCDKL 281
               +FP+L  +++  + KL  ++   M    +  L+ L+V  C+KL
Sbjct: 1093 D--IFPKLKEMEINCMNKLNTIWQSHMGFYSFHCLDSLIVRECNKL 1136

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 18/285 (6%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
            AF  L SL L NL N+E++C  +L  ES   L+ ++  +C +L N+F  S  + + RLE 
Sbjct: 791  AFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIARRVVRLEE 850

Query: 66   IAVINCSKMKEIFSIGEEVDNA-IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQ 124
            I +I+C  M+E+ +   E D A  E IEF QLR L+L  LP+ TSF         S  RQ
Sbjct: 851  ITIIDCKIMEEVVAEESENDTADGEPIEFTQLRRLTLQCLPQFTSF--------HSNRRQ 902

Query: 125  ---VSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFP 181
                S   S  +   +E+   +S  LFN K+  P LE L +S I V++IWH  H  V  P
Sbjct: 903  KLLASDVRSKEIVAGNELGTSMS--LFNTKILFPKLEDLMLSSIKVEKIWHDQH-AVQPP 959

Query: 182  RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ--VIPYF 239
              +NL  ++V  C  L Y+ ++SM+ SL QL+ LEIC+C+ ++EI+      +  ++   
Sbjct: 960  CVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKSMEEIVVPEGIGEGKMMSKM 1019

Query: 240  VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIF 284
            +FP+L  L L  LPKL   +   +  E  +L++L +  C +LK F
Sbjct: 1020 LFPKLHILSLIRLPKL-TRFCTSNLLECHSLKVLTLGKCPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685494|gb|AER13171.1| Rpp4C1 [Phaseolus vulgaris]

 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 163/308 (52%), Gaps = 38/308 (12%)

Query: 6    AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLER 65
             FP L+S+ L+ L N+E++C +RL   SF  LK I+   C KL N+F FS  + L  LER
Sbjct: 850  TFPKLESIWLYKLHNLEKICDNRLVEASFRSLKVIKIKTCVKLGNLFPFSMVRLLTVLER 909

Query: 66   IAVINCSKMKEIFS----------IGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVE 115
            I V +C  +KEI S          + EE     +KIEF QLR L+L +LP   +F C   
Sbjct: 910  IEVCDCDSLKEIVSEEIKTHDDKIVSEERQTHDDKIEFPQLRVLTLKSLP---TFTCLYT 966

Query: 116  TPSASPNRQVSQEESTAMYCSSEITLDIST-------LLFNEKVALPNLEVLEISEINVD 168
                S + Q SQ++   ++ + +I  DI          LFNEKV +P LE LE+S IN+ 
Sbjct: 967  IDKVSDSAQSSQDQ-VQLHRNKDIVADIENGIFNSCLSLFNEKVLIPKLERLELSSINIQ 1025

Query: 169  QIW--HYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI 226
            +IW   Y+H       FQNL  L V  C  LKY+ S SM  SL  LQ L +  CE +++I
Sbjct: 1026 KIWSDQYDHC------FQNLLTLNVTDCGNLKYLLSFSMAGSLVNLQSLFVSECERMEDI 1079

Query: 227  ISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYP---GMHSSEWPALEILLVYGCDKL-K 282
                R++      VFP+L  +++  + KL  ++    G+HS  +  L+ L++  C KL  
Sbjct: 1080 F---RSENAECIDVFPKLKKIEIICMEKLSTIWNSHIGLHS--FRILDSLIIIECHKLVT 1134

Query: 283  IFAADLSQ 290
            IF + + Q
Sbjct: 1135 IFPSYMGQ 1142

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.389	0.133	0.307	3.1e-10
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.678	0.236	0.274	1.6e-06
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.398	0.134	0.330	3.7e-06
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.446	0.146	0.269	0.00017
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.382	0.133	0.296	0.00035
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.681	0.238	0.228	0.00059
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.887	0.139	0.250	0.00069
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.437	0.140	0.292	0.00071

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 40/130 (30%), Positives = 77/130 (59%)

Query:   154 LPNLEVLEISEI-NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQL 212
             LP+LEVL +  + N+ ++W  +   V+    +N+  + + HC+KLK +   S ++ L +L
Sbjct:   744 LPSLEVLTLHSLHNLTRVWGNS---VSQDCLRNIRCINISHCNKLKNV---SWVQKLPKL 797

Query:   213 QRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEI 272
             + +E+  C +++E+ISE+ +  V    +FP L TL+ +DLP+L  + P   S +   +E 
Sbjct:   798 EVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQ--KVET 855

Query:   273 LLVYGCDKLK 282
             L++  C ++K
Sbjct:   856 LVITNCPRVK 865

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 69/251 (27%), Positives = 119/251 (47%)

Query:    58 KCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETP 117
             +C+ RL  IA I  SK+  + ++G    N +  ++   ++ L L    E+ +    ++  
Sbjct:   616 ECMRRLGSIAGI--SKLSSLRTLGLRNSNIM--LDVMSVKELHLLEHLEILT----IDIV 667

Query:   118 SASPNRQVSQEESTAMYCSSEITLDISTLLFNE----KVALPNLEVL--------EISEI 165
             S     Q+  +  T M C  E++  I  L++++    K+ LP ++ L        EISEI
Sbjct:   668 STMVLEQMI-DAGTLMNCMQEVS--IRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEI 724

Query:   166 NVDQI-WHYNHLPVTFPRFQNLTRLIVWHCHKLK----YIFSAS----MIRSLKQLQRLE 216
              ++++ W+ N  P T P F NL+++I+  C  LK     +F+ +    MI  L+QLQ L 
Sbjct:   725 EIERLTWNTN--P-TSPCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQEL- 780

Query:   217 ICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVY 276
             I   +     ++E    Q+     F +L  L L  LP+L+ +Y    S  +P L  + V 
Sbjct:   781 ISHAKATG--VTEEEQQQLHKIIPFQKLQILHLSSLPELKSIY--WISLSFPCLSGIYVE 836

Query:   277 GCDKLKIFAAD 287
              C KL+    D
Sbjct:   837 RCPKLRKLPLD 847

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 43/130 (33%), Positives = 66/130 (50%)

Query:   155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIR-SLKQLQ 213
             PNLE L +  +N++ I   N       R Q L  L V  C +LK +FS  ++  +L  LQ
Sbjct:   768 PNLEELSLDNVNLESIGELNGF--LGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQ 825

Query:   214 RLEICSCEDLQEIISENRTD-QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEI 272
              +++ SC  L+E+ + +          + P+LT +KL+ LP+LR L       E  +LE 
Sbjct:   826 EIKVVSCLRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLE--SLEH 883

Query:   273 LLVYGCDKLK 282
             L V  C+ LK
Sbjct:   884 LEVESCESLK 893

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 41/152 (26%), Positives = 70/152 (46%)

Query:   137 SEITL-DISTLLFNEKVALPNLEVL--EISEINVDQIWHYNHLPVTFPRFQNLTRLIVWH 193
             +E T+ D   L  N   +L  L++L   I EI +D  W         P+FQN+  + +  
Sbjct:   673 TETTIVDGGILSLNAIFSLCELDILGCNILEITID--WRCTIQREIIPQFQNIRTMTI-- 728

Query:   194 CHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFV---FPQLTTLKLQ 250
              H+ +Y+   + +     L  L +  C  ++E+IS+++    +       F  LT L L 
Sbjct:   729 -HRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSEQPFQNLTKLVLD 787

Query:   251 DLPKLRCLYPGMHSSEWPALEILLVYGCDKLK 282
              LPKL  +Y       +P LE L++  C +L+
Sbjct:   788 GLPKLESIY--WTPLPFPVLEYLVIRRCPELR 817

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 38/128 (29%), Positives = 66/128 (51%)

Query:   174 NHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD 233
             N  P T P F NL+R+ +  CH LK +   + +     L  LE+   +++++IISE + +
Sbjct:   736 NKSPTT-PCFSNLSRVFIAKCHGLKDL---TWLLFAPNLTFLEVGFSKEVEDIISEEKAE 791

Query:   234 QVIPYFV-FPQLTTLKLQDLPKLRCLYP-GMHSSEWPALEILLVYGCDKLKIFAADLSQN 291
             +     V F +L TL L +L  L+ +Y   +H   +P L+++ V  C+KL+    D    
Sbjct:   792 EHSATIVPFRKLETLHLFELRGLKRIYAKALH---FPCLKVIHVEKCEKLRKLPLDSKSG 848

Query:   292 NENDQLGI 299
                ++L I
Sbjct:   849 IAGEELVI 856

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00059, P = 0.00059
 Identities = 53/232 (22%), Positives = 111/232 (47%)

Query:    57 TKCLPRLERIAVINCSKMKEIFSIGEEVD----NAIEKIEFAQLRSLSLGNLPEVTSFCC 112
             T+ +  +  I+ +   K+  +F  G   D    N ++ +E  Q  +++LG    +  F  
Sbjct:   614 TRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTLTITLGLASILEQFLS 673

Query:   113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWH 172
                   AS  R +  E       SS I+  ++T+   +++   + ++ EI     + +  
Sbjct:   674 NQRL--ASCTRALRIENLNPQ--SSVISF-VATMDSLQELHFADSDIWEIKVKRNETVLP 728

Query:   173 YNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT 232
               H+P T   F NL+++ +  C +L+ +   + +     L  L + S  DL+E+I++ + 
Sbjct:   729 L-HIPTTTTFFPNLSQVSLEFCTRLRDL---TWLIFAPNLTVLRVISASDLKEVINKEKA 784

Query:   233 DQ--VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLK 282
             +Q  +IP   F +L  L+L+++  L+ ++ G     +P L+ +LV GC +L+
Sbjct:   785 EQQNLIP---FQELKELRLENVQMLKHIHRG--PLPFPCLQKILVNGCSELR 831

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00069, P = 0.00069
 Identities = 79/315 (25%), Positives = 135/315 (42%)

Query:     4 CDAFPLLQSLILHNLINMERL---CIDRLK----VESFNQLKNIEAYNCDKLSNI-FWFS 55
             C +   L S I  N IN++ L   C+  LK    +  F  LK      C  L  + F  +
Sbjct:   745 CSSLVELPSSI-GNAINLQNLDLGCLRLLKLPLSIVKFTNLKKFILNGCSSLVELPFMGN 803

Query:    56 TTKCLPRLERIAVINCSKMKEI-FSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV 114
              T     L+ + + NCS + E+  SIG  ++  ++ ++ +   SL    LP        +
Sbjct:   804 ATN----LQNLDLGNCSSLVELPSSIGNAIN--LQNLDLSNCSSLV--KLPSFIGNATNL 855

Query:   115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYN 174
             E         + +  ++  + ++   LD+S    +  V LP+  V  ISE+ V  + + +
Sbjct:   856 EILDLRKCSSLVEIPTSIGHVTNLWRLDLSGC--SSLVELPS-SVGNISELQVLNLHNCS 912

Query:   175 HL---PVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR 231
             +L   P +F    NL RL +  C  L  +   S I ++  LQ L +C+C +L ++ S   
Sbjct:   913 NLVKLPSSFGHATNLWRLDLSGCSSLVEL--PSSIGNITNLQELNLCNCSNLVKLPSSIG 970

Query:   232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQN 291
                +        L TL L    KL  L   ++     +LE L +  C + K F  ++S N
Sbjct:   971 NLHL--------LFTLSLARCQKLEALPSNINLK---SLERLDLTDCSQFKSFP-EISTN 1018

Query:   292 NENDQL-GIPAQQLP 305
              E   L G   +++P
Sbjct:  1019 IECLYLDGTAVEEVP 1033

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
 Identities = 43/147 (29%), Positives = 66/147 (44%)

Query:   142 DISTLLFNEKVALPNLEVLEISEINV-----DQIWHYNHLPVTFPRFQNLTRLIVWHCHK 196
             D+S L   E +    +E    SEIN+     +    Y H+    P F NLT LI+  CH 
Sbjct:   695 DLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHS 754

Query:   197 LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFV-FPQLTTLKLQDLPKL 255
             +K +   + I     L  L+I    ++ EII++ +   +      F +L  L L  LPKL
Sbjct:   755 MKDL---TWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPFQKLERLFLYGLPKL 811

Query:   256 RCLYPGMHSSEWPALEILLVYGCDKLK 282
               +Y       +P L  ++V  C KL+
Sbjct:   812 ESIY--WSPLPFPLLSNIVVKYCPKLR 836

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.08
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.85
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.79
KOG4341	483	consensus F-box protein containing LRR [General fu	98.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.35
PRK15386	426	type III secretion protein GogB; Provisional	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.16
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.02
PRK15386	426	type III secretion protein GogB; Provisional	98.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.78
PLN03150	623	hypothetical protein; Provisional	96.55
PLN03150	623	hypothetical protein; Provisional	96.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	84.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.94

>PLN03210 Resistant to P

Probab=99.74  E-value=1.8e-17  Score=168.25  Aligned_cols=253  Identities=18%  Similarity=0.264  Sum_probs=140.4

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|+.|+|+++.+++.+    +.++.+++|++|++++|..+..+  |..++.+++|++|++++|..++.++.      
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~i----p~ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~------  699 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEI----PDLSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT------  699 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcC----CccccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC------
Confidence            3455555555555444442    23455566666666666666554  44556666666666666666665552      


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCC----------CCC-Cccccccccccccccccccccc-cccccc-ccc
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPS----------ASP-NRQVSQEESTAMYCSSEITLDI-STLLFN-EKV  152 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~----------~~~-~~~~~~~~~l~l~~~~~~~~~~-~~~~~~-~~~  152 (311)
                         . ..+++|+.|.+++|..+..++.......          ..+ ......+..+.+.......... ..+... ...
T Consensus       700 ---~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        700 ---G-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             ---c-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence               1 1456667777776665554432110000          000 0000000000000000000000 000000 011


Q ss_pred             cCCCccEEEeeee-eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          153 ALPNLEVLEISEI-NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       153 ~l~~L~~L~l~~~-~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..++|++|++++| .+..+      |..++++++|+.|++.+|..++.+ |..  .++++|++|++++|.++..++....
T Consensus       776 ~~~sL~~L~Ls~n~~l~~l------P~si~~L~~L~~L~Ls~C~~L~~L-P~~--~~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVEL------PSSIQNLHKLEHLEIENCINLETL-PTG--INLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             ccccchheeCCCCCCcccc------ChhhhCCCCCCEEECCCCCCcCee-CCC--CCccccCEEECCCCCcccccccccc
Confidence            2357777777777 44444      666778888888888888888876 543  2678888888888876654422100


Q ss_pred             ----------ccC--cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510          232 ----------TDQ--VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       232 ----------~~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                                ...  ......+++|+.|++.+|++|+.++...  ..+++|+.+++.+|++++.++
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence                      000  0112348899999999999999988765  578999999999999987554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.70  E-value=1.7e-16  Score=161.20  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +.+|++|++.++ .++.++   ...+.+++|++|+++++..+..+   +.+..+++|++|++.+|..+..++.       
T Consensus       610 ~~~L~~L~L~~s-~l~~L~---~~~~~l~~Lk~L~Ls~~~~l~~i---p~ls~l~~Le~L~L~~c~~L~~lp~-------  675 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLW---DGVHSLTGLRNIDLRGSKNLKEI---PDLSMATNLETLKLSDCSSLVELPS-------  675 (1153)
T ss_pred             ccCCcEEECcCc-cccccc---cccccCCCCCEEECCCCCCcCcC---CccccCCcccEEEecCCCCccccch-------
Confidence            467888888875 466653   34478999999999998888776   3467789999999999998888763       


Q ss_pred             ccceeeecccceEecCCCCCccccccC
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCE  113 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~  113 (311)
                        .+..+++|+.|++.+|.+++.++..
T Consensus       676 --si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        676 --SIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             --hhhccCCCCEEeCCCCCCcCccCCc
Confidence              4567899999999999999888764

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=2.5e-14  Score=144.33  Aligned_cols=84  Identities=15%  Similarity=0.094  Sum_probs=51.4

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|++|+++++. +.+    ..+.+.+++|++|+++++.....+  +..++.+++|++|++++|.....++.      
T Consensus       116 ~l~~L~~L~Ls~n~-l~~----~~p~~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~------  182 (968)
T PLN00113        116 TSSSLRYLNLSNNN-FTG----SIPRGSIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIPN------  182 (968)
T ss_pred             cCCCCCEEECcCCc-ccc----ccCccccCCCCEEECcCCcccccC--ChHHhcCCCCCEEECccCcccccCCh------
Confidence            45788888888754 433    223356778888888776432222  45567777888888877654333331      


Q ss_pred             cccceeeecccceEecCCCC
Q 021510           86 NAIEKIEFAQLRSLSLGNLP  105 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~  105 (311)
                         .+..+++|++|+++++.
T Consensus       183 ---~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        183 ---SLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             ---hhhhCcCCCeeeccCCC
Confidence               33456667777776653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.49  E-value=1.1e-13  Score=139.82  Aligned_cols=89  Identities=20%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CCccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510            3 GCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      +...+++|++|+++++.-...+   +..++.+++|++|++++|.....+  +..+.++++|++|++++|.....++.   
T Consensus       135 p~~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~---  206 (968)
T PLN00113        135 PRGSIPNLETLDLSNNMLSGEI---PNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPR---  206 (968)
T ss_pred             CccccCCCCEEECcCCcccccC---ChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCCh---
Confidence            3456899999999997522222   345688999999999987544443  45678899999999998765444432   


Q ss_pred             ccccccceeeecccceEecCCCC
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLP  105 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~  105 (311)
                            .+..+++|++|++.++.
T Consensus       207 ------~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        207 ------ELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             ------HHcCcCCccEEECcCCc
Confidence                  34566777777777663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.14  E-value=1.8e-11  Score=110.78  Aligned_cols=113  Identities=21%  Similarity=0.288  Sum_probs=67.4

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|++|++++|+++.+     .+.++..+++|+.|.++. +++..+ ....+..+.+|++|++.++. +...+. |   .
T Consensus       317 qkL~~LdLs~N~i~~l-----~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IE-D---a  384 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRL-----DEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIE-D---A  384 (873)
T ss_pred             ccceeEeccccccccC-----ChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEe-c---c
Confidence            4555555555554444     122344555666666655 345544 33335566777777777765 554442 2   1


Q ss_pred             cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                      ..++.-+++|++|.+.+ .+++.++...+ ..++.||+|++.+.+-.
T Consensus       385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCcce
Confidence            23344488899999887 68888876442 46888888888776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.08  E-value=7.2e-11  Score=115.74  Aligned_cols=250  Identities=22%  Similarity=0.273  Sum_probs=155.4

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+|.|+.|+++++..+.++   +..++.+-+||+|+++++ .++.+  |..+++++.|.+|++..+..+..++.     
T Consensus       568 ~~m~~LrVLDLs~~~~l~~L---P~~I~~Li~LryL~L~~t-~I~~L--P~~l~~Lk~L~~Lnl~~~~~l~~~~~-----  636 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKL---PSSIGELVHLRYLDLSDT-GISHL--PSGLGNLKKLIYLNLEVTGRLESIPG-----  636 (889)
T ss_pred             hhCcceEEEECCCCCccCcC---ChHHhhhhhhhcccccCC-Ccccc--chHHHHHHhhheeccccccccccccc-----
Confidence            45789999999988888777   555688999999999884 67766  77888899999999888766655431     


Q ss_pred             ccccceeeecccceEecCCCC-CccccccCCCCCCCCCCccccccccccccc-----------------ccccc------
Q 021510           85 DNAIEKIEFAQLRSLSLGNLP-EVTSFCCEVETPSASPNRQVSQEESTAMYC-----------------SSEIT------  140 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~-----------------~~~~~------  140 (311)
                          ....+++|++|.+..-. ..+..-.          .+...++++....                 +....      
T Consensus       637 ----i~~~L~~Lr~L~l~~s~~~~~~~~l----------~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  637 ----ILLELQSLRVLRLPRSALSNDKLLL----------KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             ----hhhhcccccEEEeeccccccchhhH----------HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence                22347888888765421 0000000          0000111111100                 00000      


Q ss_pred             cccccccccccccCCCccEEEeeeeeceee---eccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEE
Q 021510          141 LDISTLLFNEKVALPNLEVLEISEINVDQI---WHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLE  216 (311)
Q Consensus       141 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i---~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~  216 (311)
                      ...-.........+.+|+.|.|.+|.+..+   |....   ... .|+++..+.+.+|+......+   ..-.++|+.|+
T Consensus       703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~  776 (889)
T KOG4658|consen  703 GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL---IVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLS  776 (889)
T ss_pred             ccccceeecccccccCcceEEEEcCCCchhhccccccc---chhhhHHHHHHHHhhccccccccch---hhccCcccEEE
Confidence            001112233456789999999999955432   22111   112 266788888888888887633   34578999999


Q ss_pred             EccccccceecccccccCcC--CcccCCccCeE-ecccCcccccccCCCcccCCCcccEEEEecCCCccccccc
Q 021510          217 ICSCEDLQEIISENRTDQVI--PYFVFPQLTTL-KLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD  287 (311)
Q Consensus       217 l~~c~~l~~~~~~~~~~~~~--~~~~~~~L~~L-~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~  287 (311)
                      +..|..+++++.........  ....+.++..+ .+.+.+.++.+....  ..++.|+.+.+..||++..+|..
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence            99999888876543322211  12336666666 466667777665544  45666999999999999999865

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.95  E-value=1.3e-09  Score=98.93  Aligned_cols=138  Identities=12%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc--c-
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN--R-  231 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~-  231 (311)
                      .++++|++++|.|+.+-.     ..+..+.+|..|.+++ ++++-+ |...+..+++|+.|++..+. ++.+-...  + 
T Consensus       173 ~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsr-NrittL-p~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL  244 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSR-NRITTL-PQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGL  244 (873)
T ss_pred             CCceEEeecccccccccc-----ccccccchheeeeccc-Cccccc-CHHHhhhcchhhhhhccccc-eeeehhhhhcCc
Confidence            456666666666555522     2244555666666666 344444 33335556666666666553 33220000  0 


Q ss_pred             --------------ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc-cccccCCCCCc
Q 021510          232 --------------TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA-ADLSQNNENDQ  296 (311)
Q Consensus       232 --------------~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~~~~~~~  296 (311)
                                    ....+++..+.++++|+++. .+++.+..+. -..+++|+.|++++. .+.++. ..+.--.....
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~-lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~  321 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGW-LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKE  321 (873)
T ss_pred             hhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccc-ccccchhhhhccchh-hhheeecchhhhccccee
Confidence                          00112333466666666664 4555555443 246888888888763 344333 22333334444


Q ss_pred             ccccccc
Q 021510          297 LGIPAQQ  303 (311)
Q Consensus       297 ~~~~~~~  303 (311)
                      ++++.++
T Consensus       322 LdLs~N~  328 (873)
T KOG4194|consen  322 LDLSSNR  328 (873)
T ss_pred             Eeccccc
Confidence            4444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.92  E-value=4.2e-11  Score=109.33  Aligned_cols=222  Identities=17%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+|.|+.+++.+. ++..- ..+..+-.+..|..|++++. +++..  |..+...+++-+|.++. .+++.+|.     
T Consensus        75 s~Lp~LRsv~~R~N-~LKns-GiP~diF~l~dLt~lDLShN-qL~Ev--P~~LE~AKn~iVLNLS~-N~IetIPn-----  143 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDN-NLKNS-GIPTDIFRLKDLTILDLSHN-QLREV--PTNLEYAKNSIVLNLSY-NNIETIPN-----  143 (1255)
T ss_pred             ccchhhHHHhhhcc-ccccC-CCCchhcccccceeeecchh-hhhhc--chhhhhhcCcEEEEccc-CccccCCc-----
Confidence            34667777776663 34431 11445566777888888773 55555  56667777777888777 45666652     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                         ..+.++..|-.|++++. +++.+|.......        .+..+.++.   +.+...  -+..+-++.+|+.|++++
T Consensus       144 ---~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~--------~LqtL~Ls~---NPL~hf--QLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  144 ---SLFINLTDLLFLDLSNN-RLEMLPPQIRRLS--------MLQTLKLSN---NPLNHF--QLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             ---hHHHhhHhHhhhccccc-hhhhcCHHHHHHh--------hhhhhhcCC---ChhhHH--HHhcCccchhhhhhhccc
Confidence               22234444555555543 3444433211000        000000000   000000  001112244555555555


Q ss_pred             e--eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCC
Q 021510          165 I--NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFP  242 (311)
Q Consensus       165 ~--~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  242 (311)
                      .  .+..+      |.++..+++|+.++++. +++..+ |.. +-++++|+.|++++++ ++++-...+  .      ..
T Consensus       207 TqRTl~N~------Ptsld~l~NL~dvDlS~-N~Lp~v-Pec-ly~l~~LrrLNLS~N~-iteL~~~~~--~------W~  268 (1255)
T KOG0444|consen  207 TQRTLDNI------PTSLDDLHNLRDVDLSE-NNLPIV-PEC-LYKLRNLRRLNLSGNK-ITELNMTEG--E------WE  268 (1255)
T ss_pred             ccchhhcC------CCchhhhhhhhhccccc-cCCCcc-hHH-HhhhhhhheeccCcCc-eeeeeccHH--H------Hh
Confidence            5  22222      55555666666666654 455544 444 4456666666666665 555422111  1      44


Q ss_pred             ccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510          243 QLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV  275 (311)
Q Consensus       243 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i  275 (311)
                      +|++|.++. ++|+.+|...  ..++.|.+|++
T Consensus       269 ~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~  298 (1255)
T KOG0444|consen  269 NLETLNLSR-NQLTVLPDAV--CKLTKLTKLYA  298 (1255)
T ss_pred             hhhhhcccc-chhccchHHH--hhhHHHHHHHh
Confidence            555555554 3444444433  33444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.85  E-value=7.9e-11  Score=107.58  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=161.8

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+.+|++|.+... ++..+   ...+..++.||.+.+++ .++++...|..+-.+..|..|+++. ..+.++|.     
T Consensus        52 ~~lqkLEHLs~~HN-~L~~v---hGELs~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~-----  120 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHN-QLISV---HGELSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPT-----  120 (1255)
T ss_pred             HHHhhhhhhhhhhh-hhHhh---hhhhccchhhHHHhhhc-cccccCCCCchhcccccceeeecch-hhhhhcch-----
Confidence            34678888888884 45555   45568899999999988 4677665577777888999999988 45666653     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                          ++..-.++-.|.+++. +++.+|......-          ..+-..+.+++.+..-++   ....+.+|++|.+++
T Consensus       121 ----~LE~AKn~iVLNLS~N-~IetIPn~lfinL----------tDLLfLDLS~NrLe~LPP---Q~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  121 ----NLEYAKNSIVLNLSYN-NIETIPNSLFINL----------TDLLFLDLSNNRLEMLPP---QIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ----hhhhhcCcEEEEcccC-ccccCCchHHHhh----------HhHhhhccccchhhhcCH---HHHHHhhhhhhhcCC
Confidence                2334455667777765 5555554221100          001111122222222222   223367788888888


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |-+...-     -.++..+++|..|.+++-.+..+-+|.+ +..+.+|..++++.+. +..++.  ....      +++|
T Consensus       183 NPL~hfQ-----LrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~-Lp~vPe--cly~------l~~L  247 (1255)
T KOG0444|consen  183 NPLNHFQ-----LRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENN-LPIVPE--CLYK------LRNL  247 (1255)
T ss_pred             ChhhHHH-----HhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccC-CCcchH--HHhh------hhhh
Confidence            8222110     1344566778888888766555444665 6778888988888765 665532  2222      8899


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccc-----cccCCCCCC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQ-----QLPLPLGKV  311 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~-----~~~~~~~~~  311 (311)
                      +.|.+++ ++++.+....  ..|..||.|.++. .+++.+|..++......-+-...+     +||.-.||+
T Consensus       248 rrLNLS~-N~iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  248 RRLNLSG-NKITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             heeccCc-CceeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            9999998 6777776554  4688899999987 577788877665544333333322     477777764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=4.6e-11  Score=104.08  Aligned_cols=94  Identities=16%  Similarity=0.299  Sum_probs=59.8

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .-|++|.+.||.....-.. -......+|++.|++.+|.++++.........+++|++|.+..|..+....-..      
T Consensus       138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------  210 (483)
T ss_pred             cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------
Confidence            3467777887765443111 112245678888888888877775545566678888888888887776543211      


Q ss_pred             cceeeecccceEecCCCCCccc
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTS  109 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~  109 (311)
                       ....+++|+++.++.|+.++.
T Consensus       211 -la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  211 -LAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             -HHHhhhhHHHhhhccCchhhc
Confidence             113567788888877776655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.83  E-value=6.4e-09  Score=100.66  Aligned_cols=38  Identities=26%  Similarity=0.272  Sum_probs=16.6

Q ss_pred             CccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510          242 PQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       242 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                      ++|+.|++++| .++.++...    ..+|+.|++++| ++..+|
T Consensus       367 ~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~~LP  404 (754)
T PRK15370        367 PTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLVRLP  404 (754)
T ss_pred             CCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-CcccCc
Confidence            45555555553 344443321    123555555543 333443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.80  E-value=2.1e-08  Score=96.85  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc---
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV---   84 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~---   84 (311)
                      ++|+.|++.++ +++.++.      ..++|++|+++++ +++.+  |.   ..++|++|++.++. +..++.....-   
T Consensus       222 ~~L~~L~L~~N-~Lt~LP~------lp~~Lk~LdLs~N-~LtsL--P~---lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L  287 (788)
T PRK15387        222 AHITTLVIPDN-NLTSLPA------LPPELRTLEVSGN-QLTSL--PV---LPPGLLELSIFSNP-LTHLPALPSGLCKL  287 (788)
T ss_pred             cCCCEEEccCC-cCCCCCC------CCCCCcEEEecCC-ccCcc--cC---cccccceeeccCCc-hhhhhhchhhcCEE
Confidence            46788888873 5666522      2478888888775 56655  21   23566666666642 22222110000   


Q ss_pred             c-cccce----eeecccceEecCCCCCccccc
Q 021510           85 D-NAIEK----IEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        85 ~-~~~~~----~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      . ....+    ..+++|+.|+++++ +++.++
T Consensus       288 ~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp  318 (788)
T PRK15387        288 WIFGNQLTSLPVLPPGLQELSVSDN-QLASLP  318 (788)
T ss_pred             ECcCCccccccccccccceeECCCC-ccccCC
Confidence            0 00000    12467888888876 555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.79  E-value=4.4e-08  Score=94.73  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=51.0

Q ss_pred             ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccc
Q 021510           10 LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIE   89 (311)
Q Consensus        10 L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~   89 (311)
                      -..|+++++ +++.++.   .+  .++|+.|++.++ +++.+  |.   ..++|++|+++++ .+..++.          
T Consensus       203 ~~~LdLs~~-~LtsLP~---~l--~~~L~~L~L~~N-~Lt~L--P~---lp~~Lk~LdLs~N-~LtsLP~----------  259 (788)
T PRK15387        203 NAVLNVGES-GLTTLPD---CL--PAHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGN-QLTSLPV----------  259 (788)
T ss_pred             CcEEEcCCC-CCCcCCc---ch--hcCCCEEEccCC-cCCCC--CC---CCCCCcEEEecCC-ccCcccC----------
Confidence            456788886 5766522   22  258999999884 67765  22   3689999999985 6666652          


Q ss_pred             eeeecccceEecCCCCCccccc
Q 021510           90 KIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        90 ~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                        ..++|+.|++.++ .++.++
T Consensus       260 --lp~sL~~L~Ls~N-~L~~Lp  278 (788)
T PRK15387        260 --LPPGLLELSIFSN-PLTHLP  278 (788)
T ss_pred             --cccccceeeccCC-chhhhh
Confidence              2467888888776 355444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.71  E-value=1.5e-10  Score=100.88  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=47.4

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC  112 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  112 (311)
                      .-||.|.++||..+.+-..-.....+|++++|.+.+|..+.......       --..+++|+++.+..|+++++...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------la~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------LARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------HHHhcchhhhhhhcccchhHHHHH
Confidence            46788888888777654333345678888888888887665532111       113578888888888887776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.69  E-value=7.1e-08  Score=93.56  Aligned_cols=210  Identities=15%  Similarity=0.148  Sum_probs=119.2

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .+..+|++.+. +++.++..     -.++|+.|+++++ +++.+  +..+  +.+|++|+++++ .+..++.        
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~-----Ip~~L~~L~Ls~N-~LtsL--P~~l--~~nL~~L~Ls~N-~LtsLP~--------  237 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPAC-----IPEQITTLILDNN-ELKSL--PENL--QGNIKTLYANSN-QLTSIPA--------  237 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcc-----cccCCcEEEecCC-CCCcC--Chhh--ccCCCEEECCCC-ccccCCh--------
Confidence            34566777664 35554221     1246777777764 55554  2222  357778877765 3444442        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV  167 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  167 (311)
                         ...++|+.|+++++ ++..++....          ..+..+.+..   +.+..-+   ..  -.++|+.|++++|++
T Consensus       238 ---~l~~~L~~L~Ls~N-~L~~LP~~l~----------s~L~~L~Ls~---N~L~~LP---~~--l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        238 ---TLPDTIQEMELSIN-RITELPERLP----------SALQSLDLFH---NKISCLP---EN--LPEELRYLSVYDNSI  295 (754)
T ss_pred             ---hhhccccEEECcCC-ccCcCChhHh----------CCCCEEECcC---CccCccc---cc--cCCCCcEEECCCCcc
Confidence               12246777777776 3444433210          0011111111   1111000   00  125788888888877


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      +.+      |..+  .++|+.|++.++ .+..+ |..   ..++|++|++++|. ++.++.  .        ..++|+.|
T Consensus       296 t~L------P~~l--p~sL~~L~Ls~N-~Lt~L-P~~---l~~sL~~L~Ls~N~-Lt~LP~--~--------l~~sL~~L  351 (754)
T PRK15370        296 RTL------PAHL--PSGITHLNVQSN-SLTAL-PET---LPPGLKTLEAGENA-LTSLPA--S--------LPPELQVL  351 (754)
T ss_pred             ccC------cccc--hhhHHHHHhcCC-ccccC-Ccc---ccccceeccccCCc-cccCCh--h--------hcCcccEE
Confidence            765      3222  246888888874 55544 432   23679999999986 665532  1        15789999


Q ss_pred             ecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510          248 KLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS  289 (311)
Q Consensus       248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~  289 (311)
                      +++++ +++.++...    .++|++|++.+| ++..+|..+.
T Consensus       352 ~Ls~N-~L~~LP~~l----p~~L~~LdLs~N-~Lt~LP~~l~  387 (754)
T PRK15370        352 DVSKN-QITVLPETL----PPTITTLDVSRN-ALTNLPENLP  387 (754)
T ss_pred             ECCCC-CCCcCChhh----cCCcCEEECCCC-cCCCCCHhHH
Confidence            99986 566666432    468999999997 5777876543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.69  E-value=7.5e-09  Score=98.54  Aligned_cols=219  Identities=19%  Similarity=0.204  Sum_probs=121.0

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccc-------------ccccc-cccceeeecccceEe
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSI-------------GEEVD-NAIEKIEFAQLRSLS  100 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------~~~~~-~~~~~~~l~~L~~L~  100 (311)
                      .+|++++++. .+++.+  |.+++.+.+|+.+++.... +..++..             ..+-+ .......+.+|++|+
T Consensus       241 ~nl~~~dis~-n~l~~l--p~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISH-NNLSNL--PEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecch-hhhhcc--hHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence            6788888887 456666  5888889999999886643 2222111             00000 011223467888888


Q ss_pred             cCCCCCccccccCCCCCC---------------CCCCccccccccccc-ccccccccccccccccccccCCCccEEEeee
Q 021510          101 LGNLPEVTSFCCEVETPS---------------ASPNRQVSQEESTAM-YCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus       101 l~~~~~l~~l~~~~~~~~---------------~~~~~~~~~~~~l~l-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                      +... ++.+++.......               ..+.........+.. +..+..-...|.+.   +..+.+|+.|++++
T Consensus       317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV---LVNFKHLKVLHLSY  392 (1081)
T ss_pred             ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh---hccccceeeeeecc
Confidence            8765 5555554211100               000000000000000 00111112223332   23467777777777


Q ss_pred             eeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510          165 INVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ  243 (311)
Q Consensus       165 ~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  243 (311)
                      |.+..+      |. .+.++..|+.|++++ ++++.+ |.. ..++..|+.|...++. +...+   +...      ++.
T Consensus       393 NrL~~f------pas~~~kle~LeeL~LSG-NkL~~L-p~t-va~~~~L~tL~ahsN~-l~~fP---e~~~------l~q  453 (1081)
T KOG0618|consen  393 NRLNSF------PASKLRKLEELEELNLSG-NKLTTL-PDT-VANLGRLHTLRAHSNQ-LLSFP---ELAQ------LPQ  453 (1081)
T ss_pred             cccccC------CHHHHhchHHhHHHhccc-chhhhh-hHH-HHhhhhhHHHhhcCCc-eeech---hhhh------cCc
Confidence            766655      32 356677777777777 466655 443 5566777777766654 44443   1112      788


Q ss_pred             cCeEecccCcccccccCCCcccCCCcccEEEEecCCCcc
Q 021510          244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLK  282 (311)
Q Consensus       244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~  282 (311)
                      |+.++++ |..|+.+.... +..++.|++|++.|.+++.
T Consensus       454 L~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  454 LKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             ceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence            8888887 57887765543 2345889999999988653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.66  E-value=4.8e-11  Score=103.58  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC   71 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c   71 (311)
                      ..++.|.+|++.+. ++..+   ++.++.+.+++.++++.. ++..+  |..++++++|.+++++..
T Consensus        65 ~nL~~l~vl~~~~n-~l~~l---p~aig~l~~l~~l~vs~n-~ls~l--p~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   65 KNLACLTVLNVHDN-KLSQL---PAAIGELEALKSLNVSHN-KLSEL--PEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             hcccceeEEEeccc-hhhhC---CHHHHHHHHHHHhhcccc-hHhhc--cHHHhhhhhhhhhhcccc
Confidence            34556666666663 34443   555566777777777663 44444  566667777777776663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.50  E-value=1.3e-08  Score=89.78  Aligned_cols=66  Identities=11%  Similarity=-0.051  Sum_probs=32.7

Q ss_pred             CCcccEEeeccccccccc--ccccccccCCCCccEEEEcCCCCCc--c-c-ccchhhhccCcccEEEEccccc
Q 021510            7 FPLLQSLILHNLINMERL--CIDRLKVESFNQLKNIEAYNCDKLS--N-I-FWFSTTKCLPRLERIAVINCSK   73 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l--~~~~~~~~~l~~L~~L~l~~c~~l~--~-~-~~~~~~~~l~~L~~L~i~~c~~   73 (311)
                      +++|++|++.++. ++..  ..........+++++|+++++..-.  . + ..+..+..+++|++|++++|..
T Consensus        22 l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          22 LLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            3457777777754 3110  0001223455667777776653220  0 0 0022344566777777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=1.3e-07  Score=93.10  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=62.1

Q ss_pred             CcccEEeeccccc-ccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            8 PLLQSLILHNLIN-MERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         8 ~~L~~L~L~~~~~-l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +.|++|-+.+... +..+.  ...+..++.|+.|++++|..+..+  |..++.+-+||.|++++ ..+..+|.       
T Consensus       545 ~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~-t~I~~LP~-------  612 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSD-TGISHLPS-------  612 (889)
T ss_pred             CccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccC-CCccccch-------
Confidence            4566666666432 22221  122567888999999988888887  78888899999998887 45666664       


Q ss_pred             ccceeeecccceEecCCCCCcccc
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                        ++..+.+|.+|++.....+..+
T Consensus       613 --~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  613 --GLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             --HHHHHHhhheeccccccccccc
Confidence              5677888888888876665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.47  E-value=4e-09  Score=81.76  Aligned_cols=154  Identities=16%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .+..+|.++.. +++.+   ++.+..+.+|+.|++.+ ..++.+  |..+.+++.|+.|.+.- ..+..++         
T Consensus        33 s~ITrLtLSHN-Kl~~v---ppnia~l~nlevln~~n-nqie~l--p~~issl~klr~lnvgm-nrl~~lp---------   95 (264)
T KOG0617|consen   33 SNITRLTLSHN-KLTVV---PPNIAELKNLEVLNLSN-NQIEEL--PTSISSLPKLRILNVGM-NRLNILP---------   95 (264)
T ss_pred             hhhhhhhcccC-ceeec---CCcHHHhhhhhhhhccc-chhhhc--Chhhhhchhhhheecch-hhhhcCc---------
Confidence            34444455542 23333   44456666666666655 345555  44555666666666542 3333333         


Q ss_pred             cceeeecccceEecCCCCCccc--cccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTS--FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                      .+++.||-|+.|+++.. ++..  +|..                                     +-.+..|+.|++.++
T Consensus        96 rgfgs~p~levldltyn-nl~e~~lpgn-------------------------------------ff~m~tlralyl~dn  137 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYN-NLNENSLPGN-------------------------------------FFYMTTLRALYLGDN  137 (264)
T ss_pred             cccCCCchhhhhhcccc-ccccccCCcc-------------------------------------hhHHHHHHHHHhcCC
Confidence            24556666666666543 2221  1110                                     011355566666666


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      ..+.+      |+.++.+++|+.|.+++. .+-++ |.+ ++.+++|++|.|.++. ++-+
T Consensus       138 dfe~l------p~dvg~lt~lqil~lrdn-dll~l-pke-ig~lt~lrelhiqgnr-l~vl  188 (264)
T KOG0617|consen  138 DFEIL------PPDVGKLTNLQILSLRDN-DLLSL-PKE-IGDLTRLRELHIQGNR-LTVL  188 (264)
T ss_pred             CcccC------ChhhhhhcceeEEeeccC-chhhC-cHH-HHHHHHHHHHhcccce-eeec
Confidence            44433      555667777777777763 33334 544 6667777777777765 5544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.46  E-value=4e-08  Score=86.61  Aligned_cols=227  Identities=18%  Similarity=0.053  Sum_probs=115.6

Q ss_pred             cCCcccEEeecccccccc----cccccccccCCCCccEEEEcCCCCCcccccchhhhcc---CcccEEEEccccccceec
Q 021510            6 AFPLLQSLILHNLINMER----LCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCL---PRLERIAVINCSKMKEIF   78 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~----l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~i~~c~~l~~~~   78 (311)
                      ..++|++|++.++. +..    +......+..+++|++|++++|..-...  +..+..+   ++|++|++++|.....-.
T Consensus        49 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          49 PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHH
Confidence            35678999998864 221    1011223456789999999998654322  2333334   449999999985331100


Q ss_pred             ccccccccccceeee-cccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCc
Q 021510           79 SIGEEVDNAIEKIEF-AQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNL  157 (311)
Q Consensus        79 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L  157 (311)
                      .     .....+..+ ++|+.|++.+|. ++.-...                                .+...+..+++|
T Consensus       126 ~-----~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~--------------------------------~~~~~~~~~~~L  167 (319)
T cd00116         126 R-----LLAKGLKDLPPALEKLVLGRNR-LEGASCE--------------------------------ALAKALRANRDL  167 (319)
T ss_pred             H-----HHHHHHHhCCCCceEEEcCCCc-CCchHHH--------------------------------HHHHHHHhCCCc
Confidence            0     000123345 789999999883 3321100                                000111235678


Q ss_pred             cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceecccccccC
Q 021510          158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|++++|.+..... ...+..+..+++|++|++++|. +.....   ...+..+++|++|++++|+ +.+.....-...
T Consensus       168 ~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~  244 (319)
T cd00116         168 KELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASA  244 (319)
T ss_pred             CEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHH
Confidence            888888775543100 0011223344678888888763 322211   1224456778888888875 443110000000


Q ss_pred             cCCcccCCccCeEecccCccccccc---CCCcccCCCcccEEEEecCC
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLY---PGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~---~~~~~~~~~~L~~L~i~~c~  279 (311)
                       . ....+.|++|++++|. +++..   .......++.|+++++.++.
T Consensus       245 -~-~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         245 -L-LSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             -H-hccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence             0 0013678888887763 32111   00111244677777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.45  E-value=2.6e-09  Score=93.04  Aligned_cols=213  Identities=20%  Similarity=0.274  Sum_probs=116.1

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      .++.|+.+.. ++.++   +..++++.+|+.|+++.. .+..+  ++.++.+-.|+.++-.+ ..+...++         
T Consensus        92 ~l~~l~vs~n-~ls~l---p~~i~s~~~l~~l~~s~n-~~~el--~~~i~~~~~l~dl~~~~-N~i~slp~---------  154 (565)
T KOG0472|consen   92 ALKSLNVSHN-KLSEL---PEQIGSLISLVKLDCSSN-ELKEL--PDSIGRLLDLEDLDATN-NQISSLPE---------  154 (565)
T ss_pred             HHHHhhcccc-hHhhc---cHHHhhhhhhhhhhcccc-ceeec--CchHHHHhhhhhhhccc-cccccCch---------
Confidence            4445555553 34444   556677777777777663 34443  45556666677766555 34444442         


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccccccccccc----ccccccccCCCccEEEeee
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDIST----LLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~  164 (311)
                      +.+.+.+|..+.+.+. +++.++...+.                +.+..  .+..|.    .+..+.+.+.+|+-|++..
T Consensus       155 ~~~~~~~l~~l~~~~n-~l~~l~~~~i~----------------m~~L~--~ld~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGN-KLKALPENHIA----------------MKRLK--HLDCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             HHHHHHHHHHhhcccc-chhhCCHHHHH----------------HHHHH--hcccchhhhhcCChhhcchhhhHHHHhhh
Confidence            3445556666655553 33333321110                00000  000000    0112234466777777777


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      +++..+      | .++.++.|+++++.. +.++-+ |.+...+++++..|++.+++ +++++.  +..-      +.+|
T Consensus       216 Nki~~l------P-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdNk-lke~Pd--e~cl------LrsL  277 (565)
T KOG0472|consen  216 NKIRFL------P-EFPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDNK-LKEVPD--EICL------LRSL  277 (565)
T ss_pred             cccccC------C-CCCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeeccccc-cccCch--HHHH------hhhh
Confidence            766655      3 556777777777776 455544 66666677777777777776 776643  3222      6667


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      ..|++++ ..+..++...  .++ .|+.|-+.|.|
T Consensus       278 ~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  278 ERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP  308 (565)
T ss_pred             hhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence            7777776 5566665544  344 56666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.8e-08  Score=88.61  Aligned_cols=89  Identities=19%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCCccEEEeeeee-ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510          154 LPNLEVLEISEIN-VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT  232 (311)
Q Consensus       154 l~~L~~L~l~~~~-l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  232 (311)
                      +|+|+.|++.+|. +..-      ..+...++.|+.|++.+.+.+..- -....+.++.|+.|.++.|. +.++-..+.+
T Consensus       221 fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~  292 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSSTG-IASIAEPDVE  292 (505)
T ss_pred             CCcHHHhhhhccccccee------cchhhhhhHHhhccccCCcccccc-cccccccccchhhhhccccC-cchhcCCCcc
Confidence            5777777777662 2211      122345566777777774443322 22235567777777777776 5555433321


Q ss_pred             cCcCCcccCCccCeEeccc
Q 021510          233 DQVIPYFVFPQLTTLKLQD  251 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~  251 (311)
                       .......|++|+.|.+..
T Consensus       293 -s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  293 -SLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             -chhhhcccccceeeeccc
Confidence             111122377777777665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.35  E-value=6.4e-09  Score=80.65  Aligned_cols=162  Identities=20%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      -.+.+.+.|.+++. +++.+  ++.+..+.+|+.|.+++ ..+++++.         .+..+++|+.|.++- .++..+|
T Consensus        30 f~~s~ITrLtLSHN-Kl~~v--ppnia~l~nlevln~~n-nqie~lp~---------~issl~klr~lnvgm-nrl~~lp   95 (264)
T KOG0617|consen   30 FNMSNITRLTLSHN-KLTVV--PPNIAELKNLEVLNLSN-NQIEELPT---------SISSLPKLRILNVGM-NRLNILP   95 (264)
T ss_pred             cchhhhhhhhcccC-ceeec--CCcHHHhhhhhhhhccc-chhhhcCh---------hhhhchhhhheecch-hhhhcCc
Confidence            45567777888874 55555  55667788899998887 56666663         556778888877753 2333332


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV  191 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i  191 (311)
                      .                                     .++++|-|+.|+++.+++.+-    .+|..+..+..|+.|++
T Consensus        96 r-------------------------------------gfgs~p~levldltynnl~e~----~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   96 R-------------------------------------GFGSFPALEVLDLTYNNLNEN----SLPGNFFYMTTLRALYL  134 (264)
T ss_pred             c-------------------------------------ccCCCchhhhhhccccccccc----cCCcchhHHHHHHHHHh
Confidence            2                                     234578888888888866543    33666777788888888


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCC
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPG  261 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~  261 (311)
                      ++ +..+.+ |.. .+++++|+-|.+.+++ +-.++-  +.+.      +++|++|.|.+ ..|+-++.+
T Consensus       135 ~d-ndfe~l-p~d-vg~lt~lqil~lrdnd-ll~lpk--eig~------lt~lrelhiqg-nrl~vlppe  191 (264)
T KOG0617|consen  135 GD-NDFEIL-PPD-VGKLTNLQILSLRDND-LLSLPK--EIGD------LTRLRELHIQG-NRLTVLPPE  191 (264)
T ss_pred             cC-CCcccC-Chh-hhhhcceeEEeeccCc-hhhCcH--HHHH------HHHHHHHhccc-ceeeecChh
Confidence            88 456655 555 6888888888888877 433422  2222      78888888877 566666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.26  E-value=6.2e-06  Score=73.86  Aligned_cols=61  Identities=15%  Similarity=0.276  Sum_probs=38.4

Q ss_pred             CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510           33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                      .+.++++|++++| .++.+  |   .--.+|++|.+++|..+..++.           ...++|++|.+++|.++..+
T Consensus        50 ~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         50 EARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCccccccc
Confidence            3577778888877 56555  2   1233578888877777766552           12357778888777666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.20  E-value=2.2e-06  Score=68.32  Aligned_cols=111  Identities=23%  Similarity=0.339  Sum_probs=40.4

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +.+|+.|++++|+++.+       .++..++.|+.|++++ +.++++ .......+++|++|+++++. +.++-.-    
T Consensus        41 l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N~-I~~l~~l----  106 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNNK-ISDLNEL----  106 (175)
T ss_dssp             -TT--EEE-TTS--S---------TT----TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SCCCC----
T ss_pred             hcCCCEEECCCCCCccc-------cCccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCCc-CCChHHh----
Confidence            56777777777777766       4455677788887777 566655 32323457788888887775 5544211    


Q ss_pred             CcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCC
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDK  280 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~  280 (311)
                        .....+++|+.|++.++|--+.- +...+...+|+|+.|+-.....
T Consensus       107 --~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen  107 --EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             --GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             --HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence              11223777777777776542110 0111122566666666554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=4e-08  Score=82.65  Aligned_cols=187  Identities=17%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             CccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCC
Q 021510           36 QLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVE  115 (311)
Q Consensus        36 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  115 (311)
                      .|++|++++ ..++.-.-...+..|.+|+.|.+.+..-=..+.         ..+.+-..|+.|+++.|..++.......
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~---------~~iAkN~~L~~lnlsm~sG~t~n~~~ll  255 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV---------NTIAKNSNLVRLNLSMCSGFTENALQLL  255 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHH---------HHHhccccceeeccccccccchhHHHHH
Confidence            466666665 233322112344556666666665532111111         1223445677777777766654433111


Q ss_pred             CCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCC-CCcccEEEEecC
Q 021510          116 TPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPR-FQNLTRLIVWHC  194 (311)
Q Consensus       116 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~-l~~L~~L~i~~c  194 (311)
                                                         +.++..|.+|++++|.++.-...    -.+.+ -.+|+.|++++|
T Consensus       256 -----------------------------------~~scs~L~~LNlsWc~l~~~~Vt----v~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  256 -----------------------------------LSSCSRLDELNLSWCFLFTEKVT----VAVAHISETLTQLNLSGY  296 (419)
T ss_pred             -----------------------------------HHhhhhHhhcCchHhhccchhhh----HHHhhhchhhhhhhhhhh
Confidence                                               12356777777777733211000    00001 136777777776


Q ss_pred             CC-CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEE
Q 021510          195 HK-LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEIL  273 (311)
Q Consensus       195 ~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L  273 (311)
                      .+ +..-........+|+|..|++++|..++.-.+. .      +..|+.|++|.++.|..+---.. .+....|+|.+|
T Consensus       297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~------~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yL  368 (419)
T KOG2120|consen  297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E------FFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYL  368 (419)
T ss_pred             HhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-H------HHhcchheeeehhhhcCCChHHe-eeeccCcceEEE
Confidence            43 332212333556778888888877655542211 1      12277788888888776532111 011346778888


Q ss_pred             EEecCC
Q 021510          274 LVYGCD  279 (311)
Q Consensus       274 ~i~~c~  279 (311)
                      ++.||-
T Consensus       369 dv~g~v  374 (419)
T KOG2120|consen  369 DVFGCV  374 (419)
T ss_pred             Eecccc
Confidence            877753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.8e-07  Score=82.49  Aligned_cols=63  Identities=17%  Similarity=0.202  Sum_probs=28.5

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchH-----HHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSAS-----MIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~-----~~~~l~~L~~L~l~~c~  221 (311)
                      +..|++|+|+++++.+...    -...+.|+.|.-|.+..| ++.++-...     ....+++|++|.+..++
T Consensus       245 ~~~L~~LdLs~N~li~~~~----~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQ----GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhHHhhccccCCccccccc----ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence            4556666666663333200    012345555555555553 222221111     12345666666666655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.14  E-value=3.4e-07  Score=79.88  Aligned_cols=86  Identities=24%  Similarity=0.373  Sum_probs=66.0

Q ss_pred             cccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc
Q 021510          151 KVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN  230 (311)
Q Consensus       151 ~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  230 (311)
                      +..+++|++|++++|+++.|-+     ..+....+++.|++.+ +++..+ ...++..+..|+.|++++++ ++.+..  
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~-----~aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~~--  339 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIED-----GAFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVAP--  339 (498)
T ss_pred             HhhcccceEeccCCCccchhhh-----hhhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCCe-eEEEec--
Confidence            4568999999999999988822     3467788999999998 677777 66778999999999999997 776632  


Q ss_pred             cccCcCCcccCCccCeEeccc
Q 021510          231 RTDQVIPYFVFPQLTTLKLQD  251 (311)
Q Consensus       231 ~~~~~~~~~~~~~L~~L~l~~  251 (311)
                           .++..+.+|.+|.+-.
T Consensus       340 -----~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  340 -----GAFQTLFSLSTLNLLS  355 (498)
T ss_pred             -----ccccccceeeeeehcc
Confidence                 2222366777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.05  E-value=6.8e-06  Score=53.60  Aligned_cols=60  Identities=28%  Similarity=0.456  Sum_probs=37.6

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      |+|++|++++|+++.+.     +..+..+++|+.|++++ +.++.+ +...+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEEC-----TTTTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            46677777777666661     23456667777777775 355555 33446667777777777664

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.02  E-value=3e-06  Score=67.55  Aligned_cols=106  Identities=20%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT  232 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  232 (311)
                      ..++++|++.+++++.|       ..++ .+.+|+.|+++++ .++.+.   .+..++.|++|+++++. ++.+..  ..
T Consensus        18 ~~~~~~L~L~~n~I~~I-------e~L~~~l~~L~~L~Ls~N-~I~~l~---~l~~L~~L~~L~L~~N~-I~~i~~--~l   83 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-------ENLGATLDKLEVLDLSNN-QITKLE---GLPGLPRLKTLDLSNNR-ISSISE--GL   83 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS---S--T---T----TT--EEE--SS----S-CH--HH
T ss_pred             ccccccccccccccccc-------cchhhhhcCCCEEECCCC-CCcccc---CccChhhhhhcccCCCC-CCcccc--ch
Confidence            45789999999988877       3344 5789999999995 666552   26678999999999997 776621  11


Q ss_pred             cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      .     ..+|+|++|++.+ .++.++..-..-..+++|+.|++.++|
T Consensus        84 ~-----~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   84 D-----KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             H-----HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             H-----HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence            0     1189999999987 566665443333478999999999855

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=1.2e-05  Score=72.10  Aligned_cols=61  Identities=23%  Similarity=0.519  Sum_probs=45.0

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      .+.+++.|+|++|.++.+.   .+|      .+|++|.+++|..++.+ |.. +  .++|++|++++|.++..+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP------~sLtsL~Lsnc~nLtsL-P~~-L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLP------NELTEITIENCNNLTTL-PGS-I--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCC------CCCcEEEccCCCCcccC-Cch-h--hhhhhheEccCccccccc
Confidence            4688999999999877762   112      37999999999888766 543 2  357999999999767654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.94  E-value=4e-07  Score=87.09  Aligned_cols=85  Identities=24%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..++.|++|++++|+++.+      |..+..+..|+.|...+ +.+... | + +..+++|+.+|++.+. +..+.....
T Consensus       404 ~kle~LeeL~LSGNkL~~L------p~tva~~~~L~tL~ahs-N~l~~f-P-e-~~~l~qL~~lDlS~N~-L~~~~l~~~  472 (1081)
T KOG0618|consen  404 RKLEELEELNLSGNKLTTL------PDTVANLGRLHTLRAHS-NQLLSF-P-E-LAQLPQLKVLDLSCNN-LSEVTLPEA  472 (1081)
T ss_pred             hchHHhHHHhcccchhhhh------hHHHHhhhhhHHHhhcC-Cceeec-h-h-hhhcCcceEEecccch-hhhhhhhhh
Confidence            3478899999999999988      66678888999987766 455544 6 3 6789999999998776 776643322


Q ss_pred             ccCcCCcccCCccCeEecccCcc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPK  254 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~  254 (311)
                      . .      -|+|++|++++...
T Consensus       473 ~-p------~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  473 L-P------SPNLKYLDLSGNTR  488 (1081)
T ss_pred             C-C------CcccceeeccCCcc
Confidence            2 1      37899999998765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.91  E-value=6.5e-07  Score=78.15  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=37.5

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecc
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFS   79 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~   79 (311)
                      .++.|.. +.++.++  ...++.+++||+|++++ .+++.+. +..+..+++|.+|.+.+..+++.++.
T Consensus        70 veirLdq-N~I~~iP--~~aF~~l~~LRrLdLS~-N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   70 VEIRLDQ-NQISSIP--PGAFKTLHRLRRLDLSK-NNISFIA-PDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             eEEEecc-CCcccCC--hhhccchhhhceecccc-cchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            3444444 2344432  23456777777777777 3555553 35566677777777766666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=4.5e-07  Score=76.42  Aligned_cols=187  Identities=21%  Similarity=0.140  Sum_probs=105.8

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      .||+|+|++- +++.- .-..-+..+.+||.|.+.|. .+.+-. ...+..-.+|+.|++++|..+.+...       ..
T Consensus       186 Rlq~lDLS~s-~it~s-tl~~iLs~C~kLk~lSlEg~-~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~-------~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVS-TLHGILSQCSKLKNLSLEGL-RLDDPI-VNTIAKNSNLVRLNLSMCSGFTENAL-------QL  254 (419)
T ss_pred             hhHHhhcchh-heeHH-HHHHHHHHHHhhhhcccccc-ccCcHH-HHHHhccccceeeccccccccchhHH-------HH
Confidence            5888888873 34431 00122355678888888885 333311 23344567889999988877655321       11


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ec
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NV  167 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l  167 (311)
                      -...++.|+.|.++.|--.+.. .....                 ..                 --++|+.|++++| +-
T Consensus       255 l~~scs~L~~LNlsWc~l~~~~-Vtv~V-----------------~h-----------------ise~l~~LNlsG~rrn  299 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCFLFTEK-VTVAV-----------------AH-----------------ISETLTQLNLSGYRRN  299 (419)
T ss_pred             HHHhhhhHhhcCchHhhccchh-hhHHH-----------------hh-----------------hchhhhhhhhhhhHhh
Confidence            2345677888888777433322 10000                 00                 1267778888877 21


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      ....+   ...-...+++|..|++++|..++.- -+..+..++.|++|.++.|..+..    +..   ..+...|+|..|
T Consensus       300 l~~sh---~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p----~~~---~~l~s~psl~yL  368 (419)
T KOG2120|consen  300 LQKSH---LSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP----ETL---LELNSKPSLVYL  368 (419)
T ss_pred             hhhhH---HHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh----HHe---eeeccCcceEEE
Confidence            11100   0111345678888888888777753 444466788888888888874421    110   011227788888


Q ss_pred             ecccC
Q 021510          248 KLQDL  252 (311)
Q Consensus       248 ~l~~c  252 (311)
                      ++.+|
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            88776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.69  E-value=7.1e-05  Score=48.69  Aligned_cols=58  Identities=26%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             cccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510          185 NLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       185 ~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  252 (311)
                      +|++|+++++ .++.+ +...+..+++|++|+++++. ++.+.. +.      +..+++|++|+++++
T Consensus         2 ~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~~-~~------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIPP-DA------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEET-TT------TTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccCH-HH------HcCCCCCCEEeCcCC
Confidence            5666666664 55555 43445666666666666555 555432 11      111666666666554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.56  E-value=1.8e-06  Score=80.53  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=24.1

Q ss_pred             CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcc
Q 021510           33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVIN   70 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~   70 (311)
                      ..++|+.|.+.+|..+....-.+....+++|++|++++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            35677777777777666532134556677777777766

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=3.3e-06  Score=78.72  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCC-CCCcccc--cchhhhccCcccEEEEccccccceecccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNC-DKLSNIF--WFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      .++|++|.+.+|..+..... .......++|+.|++++| .......  .......+++|++|+++.|..+.......  
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~--  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSL-DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA--  263 (482)
T ss_pred             CchhhHhhhcccccCChhhH-HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH--
Confidence            68899999999987776321 233456799999999984 3333221  13455667999999999987654432100  


Q ss_pred             cccccceeeecccceEecCCCCCcccc
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                           ....+++|++|.+.+|..+++.
T Consensus       264 -----l~~~c~~L~~L~l~~c~~lt~~  285 (482)
T KOG1947|consen  264 -----LASRCPNLETLSLSNCSNLTDE  285 (482)
T ss_pred             -----HHhhCCCcceEccCCCCccchh
Confidence                 1123789999998888876554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.45  E-value=4.7e-05  Score=64.62  Aligned_cols=107  Identities=18%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +|.++.|+++.|.+..+       ..++.+++|+.|++++ +.+..+  .++...+.+.+.|.++.+. ++.+.+   ..
T Consensus       306 ~Pkir~L~lS~N~i~~v-------~nLa~L~~L~~LDLS~-N~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~LSG---L~  371 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTV-------QNLAELPQLQLLDLSG-NLLAEC--VGWHLKLGNIKTLKLAQNK-IETLSG---LR  371 (490)
T ss_pred             ccceeEEeccccceeee-------hhhhhcccceEeeccc-chhHhh--hhhHhhhcCEeeeehhhhh-Hhhhhh---hH
Confidence            57777777777777766       4466777788887777 344433  1234556677777777765 555532   11


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                      .      +-+|..|++++ ++++.+.......++|.||.+.+.+.|--
T Consensus       372 K------LYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  372 K------LYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             h------hhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            1      56677777765 34444433333357888998888888743

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=3.7e-05  Score=74.31  Aligned_cols=14  Identities=36%  Similarity=0.598  Sum_probs=7.5

Q ss_pred             eeecccceEecCCC
Q 021510           91 IEFAQLRSLSLGNL  104 (311)
Q Consensus        91 ~~l~~L~~L~l~~~  104 (311)
                      ..||+|..|+|+++
T Consensus       170 ~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  170 ASFPNLRSLDISGT  183 (699)
T ss_pred             hccCccceeecCCC
Confidence            34555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.32  E-value=0.00022  Score=64.91  Aligned_cols=65  Identities=14%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccC-cccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLP-RLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                      ..++.++.|.+.+ ..+..+  ++...... +|++|++++ ..+..++         ..+..++.|+.|+++++ .+.++
T Consensus       113 ~~~~~l~~L~l~~-n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~---------~~~~~l~~L~~L~l~~N-~l~~l  178 (394)
T COG4886         113 LELTNLTSLDLDN-NNITDI--PPLIGLLKSNLKELDLSD-NKIESLP---------SPLRNLPNLKNLDLSFN-DLSDL  178 (394)
T ss_pred             hcccceeEEecCC-cccccC--ccccccchhhcccccccc-cchhhhh---------hhhhccccccccccCCc-hhhhh
Confidence            3345566666654 334444  23333342 666666665 3333332         12345666666666665 34443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.22  E-value=8.4e-05  Score=71.86  Aligned_cols=87  Identities=24%  Similarity=0.311  Sum_probs=55.2

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee--cccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI--ISEN  230 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~  230 (311)
                      ++|+|..|+|++++++.+       .+++++++|+.|.+++..--. ..-...+-++++|+.|||+.-.+....  +...
T Consensus       171 sFpNL~sLDIS~TnI~nl-------~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY  242 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-------SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY  242 (699)
T ss_pred             ccCccceeecCCCCccCc-------HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHH
Confidence            479999999999977766       456788888888888753332 112223567889999999876544332  1100


Q ss_pred             cccCcCCcccCCccCeEeccc
Q 021510          231 RTDQVIPYFVFPQLTTLKLQD  251 (311)
Q Consensus       231 ~~~~~~~~~~~~~L~~L~l~~  251 (311)
                      -..    ...+|+|+.|+.++
T Consensus       243 lec----~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  243 LEC----GMVLPELRFLDCSG  259 (699)
T ss_pred             HHh----cccCccccEEecCC
Confidence            000    11288888888774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.22  E-value=0.00026  Score=64.51  Aligned_cols=88  Identities=18%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             CCcccEEeecccccccccccccccccCCC-CccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFN-QLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      ++.++.|++.+. .+.++   .+..+.++ +|+.|++++. .++.+  +..++.+++|+.|.+++++ +..++.      
T Consensus       115 ~~~l~~L~l~~n-~i~~i---~~~~~~~~~nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~------  180 (394)
T COG4886         115 LTNLTSLDLDNN-NITDI---PPLIGLLKSNLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFND-LSDLPK------  180 (394)
T ss_pred             ccceeEEecCCc-ccccC---ccccccchhhccccccccc-chhhh--hhhhhccccccccccCCch-hhhhhh------
Confidence            456777777774 35554   33445554 9999999884 55554  3467889999999999864 444442      


Q ss_pred             cccceeeecccceEecCCCCCcccccc
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCC  112 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~  112 (311)
                         .....+.|+.|++++. ++..++.
T Consensus       181 ---~~~~~~~L~~L~ls~N-~i~~l~~  203 (394)
T COG4886         181 ---LLSNLSNLNNLDLSGN-KISDLPP  203 (394)
T ss_pred             ---hhhhhhhhhheeccCC-ccccCch
Confidence               1226688899999886 5665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.16  E-value=3.8e-05  Score=65.15  Aligned_cols=16  Identities=31%  Similarity=0.393  Sum_probs=11.9

Q ss_pred             CccCCcccEEeecccc
Q 021510            4 CDAFPLLQSLILHNLI   19 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~   19 (311)
                      ...|.+|..+.++.|.
T Consensus       210 l~~f~~l~~~~~s~~~  225 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALS  225 (490)
T ss_pred             hHHhhhhheeeeeccc
Confidence            4567888888888763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.78  E-value=3.2e-05  Score=70.82  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=15.7

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEec
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWH  193 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~  193 (311)
                      .++|..|+.+.|.+..+      |.+++++.+|+.|.+..
T Consensus       165 ~~tl~~ld~s~nei~sl------psql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQSL------PSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             chhHHHhhhhhhhhhhc------hHHhhhHHHHHHHHHhh
Confidence            34444444444444433      34444444555444444

>PLN03150 hypothetical protein; Provisional

Probab=96.55  E-value=0.0042  Score=60.05  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=73.6

Q ss_pred             ccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcC
Q 021510          157 LEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI  236 (311)
Q Consensus       157 L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  236 (311)
                      ++.|+++++.+...     +|..+..+++|+.|+++++.-...+ |.. +..+++|+.|++++|. +...+. +....  
T Consensus       420 v~~L~L~~n~L~g~-----ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~-~~~l~~L~~LdLs~N~-lsg~iP-~~l~~--  488 (623)
T PLN03150        420 IDGLGLDNQGLRGF-----IPNDISKLRHLQSINLSGNSIRGNI-PPS-LGSITSLEVLDLSYNS-FNGSIP-ESLGQ--  488 (623)
T ss_pred             EEEEECCCCCcccc-----CCHHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECCCCC-CCCCCc-hHHhc--
Confidence            66777777766543     3566778889999999986433333 554 7889999999999887 543321 12222  


Q ss_pred             CcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510          237 PYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       237 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                          +++|+.|+++++.--..++... ......+..+.+.+++.+...|
T Consensus       489 ----L~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        489 ----LTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ----CCCCCEEECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence                8889999998865444555432 1123456678888777666444

>PLN03150 hypothetical protein; Provisional

Probab=96.43  E-value=0.0046  Score=59.78  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=42.3

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      ..+++|+.|++++|++.+.     +|..+..+++|+.|+++++.-...+ |.. +.++++|+.|++++|.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~LdLs~N~lsg~i-P~~-l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGN-----IPPSLGSITSLEVLDLSYNSFNGSI-PES-LGQLTSLRILNLNGNS  501 (623)
T ss_pred             hCCCCCCEEECCCCcccCc-----CChHHhCCCCCCEEECCCCCCCCCC-chH-HhcCCCCCEEECcCCc
Confidence            3467788888888766532     2555677778888888875333333 544 6778888888888776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.42  E-value=0.0046  Score=37.10  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=17.2

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCC
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNC   45 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c   45 (311)
                      ++|++|+++++ +++++   ++.++.+++|++|+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l---~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDL---PPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSS-S-SSH---GGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCC-CCccc---CchHhCCCCCCEEEecCC
Confidence            35666666664 34443   222456666666666664

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.0019  Score=55.12  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      -+|++..+-+-.|-+++...+.    +...++.+-.|.+.. .++.++.....+..+++|+.|++.+.+-.+.+
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek----~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEK----GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hcccchheeeecCcccchhhcc----cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            3677777777777444442222    223344555666666 56666666666778999999999988844433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00087  Score=57.05  Aligned_cols=68  Identities=15%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             cCCCccEEEeeeeeceee--eccCCCCCCCCCC-CcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          153 ALPNLEVLEISEINVDQI--WHYNHLPVTFPRF-QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i--~~~~~~p~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      .+|.+++|+++.|++..+  -+++.     ... +.++.|+.-.|......-.......+|++..+-+..|+ +...
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~-----e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~  214 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCI-----EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE  214 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccc-----cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence            467777777777722211  11110     111 14555555555333222111223345666666666665 4433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.17  E-value=0.0096  Score=35.72  Aligned_cols=39  Identities=21%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEcccccccee
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEI   77 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~   77 (311)
                      ++|++|+++++ +++.+  ++.+.++++|++|+++++. +..+
T Consensus         1 ~~L~~L~l~~N-~i~~l--~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDL--PPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSH--GGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCC-CCccc--CchHhCCCCCCEEEecCCC-CCCC
Confidence            47888888885 66666  3447788888888888863 4444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.0013  Score=52.93  Aligned_cols=77  Identities=17%  Similarity=0.281  Sum_probs=56.4

Q ss_pred             ccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCC
Q 021510           27 DRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPE  106 (311)
Q Consensus        27 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  106 (311)
                      +...+..++.++.|.+.+|..+.++.....-+..++|++|+|++|+.+++--        -..+..+++|+.|.+.+.+.
T Consensus       117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--------L~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--------LACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--------HHHHHHhhhhHHHHhcCchh
Confidence            3445577788888999999888876544444567899999999999886532        11345788999999998887


Q ss_pred             ccccc
Q 021510          107 VTSFC  111 (311)
Q Consensus       107 l~~l~  111 (311)
                      +.+..
T Consensus       189 v~~~e  193 (221)
T KOG3864|consen  189 VANLE  193 (221)
T ss_pred             hhchH
Confidence            76654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.93  E-value=0.00037  Score=64.14  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             cccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCC
Q 021510           28 RLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        28 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  104 (311)
                      +..++++..|++|+++.. .+..+  |.-+..++ |+.|-+++ .+++.++.         +++..+.|.+|+.+.|
T Consensus       114 p~~i~~L~~lt~l~ls~N-qlS~l--p~~lC~lp-Lkvli~sN-Nkl~~lp~---------~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSN-QLSHL--PDGLCDLP-LKVLIVSN-NKLTSLPE---------EIGLLPTLAHLDVSKN  176 (722)
T ss_pred             chhhhhhhHHHHhhhccc-hhhcC--ChhhhcCc-ceeEEEec-CccccCCc---------ccccchhHHHhhhhhh
Confidence            444566666666666552 33333  22233332 55555554 34444432         3334455555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.00087  Score=53.82  Aligned_cols=64  Identities=19%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCS   72 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~   72 (311)
                      ++.++.|.+.+|..+.+++.+... +-+++|+.|+|++|++++.-. ...+..+++|+.|.+.+.+
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCch
Confidence            344455555555554444322111 133555555555555555421 2334445555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=0.00054  Score=57.75  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      ++.|+.|.++-|+|+++       ..+..|++|++|++.. +.+.++.....+.++|+|+.|-+..++.-.+.....   
T Consensus        40 Mp~lEVLsLSvNkIssL-------~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY---  108 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSL-------APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY---  108 (388)
T ss_pred             cccceeEEeeccccccc-------hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhH---
Confidence            78999999999988876       5667889999999987 566666566678889999999888877443321000   


Q ss_pred             CcCCcccCCccCeEe
Q 021510          234 QVIPYFVFPQLTTLK  248 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~  248 (311)
                      -......+|+|++|+
T Consensus       109 R~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  109 RRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHcccchhcc
Confidence            011223488888886

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.27  E-value=0.0079  Score=50.28  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=74.6

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCC-CC-ccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCH-KL-KYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~-~l-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      +..|+.|.+.++.++++       .++..+++|++|.+++.+ +. ..+ ... +..+|+|+.+.+++++ +..+.....
T Consensus        42 ~~~le~ls~~n~gltt~-------~~~P~Lp~LkkL~lsdn~~~~~~~l-~vl-~e~~P~l~~l~ls~Nk-i~~lstl~p  111 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-------TNFPKLPKLKKLELSDNYRRVSGGL-EVL-AEKAPNLKVLNLSGNK-IKDLSTLRP  111 (260)
T ss_pred             ccchhhhhhhccceeec-------ccCCCcchhhhhcccCCcccccccc-eeh-hhhCCceeEEeecCCc-cccccccch
Confidence            56777777888877766       445577789999888752 11 112 222 4567999999999887 554322222


Q ss_pred             ccCcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCCcccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                      .      ..+.+|.+|.+.+|+-.+-- +...+...+++|.+|+-.++..-+.-+.
T Consensus       112 l------~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  112 L------KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             h------hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence            2      22788889999888765521 1223344678888888877766654443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.97  E-value=0.00067  Score=64.29  Aligned_cols=111  Identities=15%  Similarity=0.078  Sum_probs=67.8

Q ss_pred             chhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccc
Q 021510           54 FSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAM  133 (311)
Q Consensus        54 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l  133 (311)
                      ...++-++.|+.|+++... +..+.          .+..+++|++|+|+.. .++.++.-.                   
T Consensus       180 D~SLqll~ale~LnLshNk-~~~v~----------~Lr~l~~LkhLDlsyN-~L~~vp~l~-------------------  228 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNK-FTKVD----------NLRRLPKLKHLDLSYN-CLRHVPQLS-------------------  228 (1096)
T ss_pred             HHHHHHHHHhhhhccchhh-hhhhH----------HHHhcccccccccccc-hhccccccc-------------------
Confidence            4466778888888888753 32222          4567888999988764 444443210                   


Q ss_pred             ccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc
Q 021510          134 YCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ  213 (311)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~  213 (311)
                                      . . --+|+.|.+++|.++++       .++.++.+|+-|++++. -+........+..+..|+
T Consensus       229 ----------------~-~-gc~L~~L~lrnN~l~tL-------~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~  282 (1096)
T KOG1859|consen  229 ----------------M-V-GCKLQLLNLRNNALTTL-------RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLI  282 (1096)
T ss_pred             ----------------h-h-hhhheeeeecccHHHhh-------hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHH
Confidence                            0 0 12377788888866655       45567777888877762 222222333455566777


Q ss_pred             EEEEcccc
Q 021510          214 RLEICSCE  221 (311)
Q Consensus       214 ~L~l~~c~  221 (311)
                      .|.+.+++
T Consensus       283 ~L~LeGNP  290 (1096)
T KOG1859|consen  283 VLWLEGNP  290 (1096)
T ss_pred             HHhhcCCc
Confidence            77777766

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.82  E-value=0.0063  Score=55.90  Aligned_cols=12  Identities=17%  Similarity=0.160  Sum_probs=4.9

Q ss_pred             ccCcccEEEEcc
Q 021510           59 CLPRLERIAVIN   70 (311)
Q Consensus        59 ~l~~L~~L~i~~   70 (311)
                      .+++|++|++++
T Consensus       116 ~~~~L~~L~ls~  127 (414)
T KOG0531|consen  116 SLVNLQVLDLSF  127 (414)
T ss_pred             hhhcchheeccc
Confidence            344444444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.0012  Score=55.70  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=57.1

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +.+.++|+++||. +.++.    -...++.|+.|.++- ++++.+   ..+..|.+|++|++... .+..+..       
T Consensus        18 l~~vkKLNcwg~~-L~DIs----ic~kMp~lEVLsLSv-NkIssL---~pl~rCtrLkElYLRkN-~I~sldE-------   80 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDIS----ICEKMPLLEVLSLSV-NKISSL---APLQRCTRLKELYLRKN-CIESLDE-------   80 (388)
T ss_pred             HHHhhhhcccCCC-ccHHH----HHHhcccceeEEeec-cccccc---hhHHHHHHHHHHHHHhc-ccccHHH-------
Confidence            5567788888874 66642    235788899998875 566666   44667888888888763 3333321       


Q ss_pred             ccceeeecccceEecCCCCCcc
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVT  108 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~  108 (311)
                      -..+.++|+|+.|+|...|-..
T Consensus        81 L~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HHHHhcCchhhhHhhccCCccc
Confidence            1145678899999998866443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.88  E-value=0.13  Score=41.66  Aligned_cols=17  Identities=29%  Similarity=0.554  Sum_probs=7.8

Q ss_pred             CCCccEEEeeeeeceee
Q 021510          154 LPNLEVLEISEINVDQI  170 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i  170 (311)
                      ++.|.+|.+.+|.|+.|
T Consensus        63 l~rL~tLll~nNrIt~I   79 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRI   79 (233)
T ss_pred             ccccceEEecCCcceee
Confidence            34444444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.79  E-value=0.008  Score=52.29  Aligned_cols=119  Identities=23%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceeccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISE  229 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~  229 (311)
                      ..+.|+++++..+.+..-.. .-+...+.++++|+.|++.+. .++....   ...+..+++|+++++++|- ++.-   
T Consensus       183 ~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~---  256 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LENE---  256 (382)
T ss_pred             hccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-cccc---
Confidence            35788888888874332110 001234677889999999884 3332211   1235567888999999985 3321   


Q ss_pred             ccccC--cCCcccCCccCeEecccCccccc----ccCCCcccCCCcccEEEEecCCC
Q 021510          230 NRTDQ--VIPYFVFPQLTTLKLQDLPKLRC----LYPGMHSSEWPALEILLVYGCDK  280 (311)
Q Consensus       230 ~~~~~--~~~~~~~~~L~~L~l~~c~~L~~----l~~~~~~~~~~~L~~L~i~~c~~  280 (311)
                       +...  .......|+|+.|.+.++.-=.+    +....  ..-|.|++|.+.+|.-
T Consensus       257 -Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~--~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  257 -GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM--AEKPDLEKLNLNGNRL  310 (382)
T ss_pred             -cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH--hcchhhHHhcCCcccc
Confidence             0000  00011278888888877542111    11111  1367788888877654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.44  E-value=0.0052  Score=53.44  Aligned_cols=233  Identities=15%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             CCcccEEeecccccccc---cc----cccccccCCCCccEEEEcCCCCCccccc--chhhhccCcccEEEEcccccccee
Q 021510            7 FPLLQSLILHNLINMER---LC----IDRLKVESFNQLKNIEAYNCDKLSNIFW--FSTTKCLPRLERIAVINCSKMKEI   77 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~---l~----~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c~~l~~~   77 (311)
                      .++|++.+++++.--+-   ++    .-...+-..++|++|+++++..-..-..  ...+.++.+|++|.+.+|.--.. 
T Consensus        57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-  135 (382)
T KOG1909|consen   57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-  135 (382)
T ss_pred             cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh-
Confidence            45788888888642111   10    0012234456999999998653222111  33566789999999999852211 


Q ss_pred             ccccccc---c--cccceeeecccceEecCCCCCccccccCCCCCC--CCCCcccccccccccccccccccccccccccc
Q 021510           78 FSIGEEV---D--NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPS--ASPNRQVSQEESTAMYCSSEITLDISTLLFNE  150 (311)
Q Consensus        78 ~~~~~~~---~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~  150 (311)
                      .......   +  .......-++|+++...+. ++.+.+.......  ..+..+.   .++....|.....   .-+...
T Consensus       136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee---vr~~qN~I~~eG~---~al~ea  208 (382)
T KOG1909|consen  136 AGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE---VRLSQNGIRPEGV---TALAEA  208 (382)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce---EEEecccccCchh---HHHHHH
Confidence            0000000   0  0111234478888888775 4444332111000  0000000   0000011110000   112233


Q ss_pred             cccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccc----cchHHHhccCCCcEEEEcccccccee
Q 021510          151 KVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYI----FSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       151 ~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~----~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      +..+++|+.|++.+|.++.-... .+...+..|++|+.+++.+|. +..-    +....-...|+|+.+.+.+|. ++.-
T Consensus       209 l~~~~~LevLdl~DNtft~egs~-~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~d  285 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSV-ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRD  285 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHH-HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHH
Confidence            45789999999999944322100 012346678899999999993 2222    122223457899999999987 4321


Q ss_pred             cccccccCcCCcccCCccCeEecccCc
Q 021510          227 ISENRTDQVIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       227 ~~~~~~~~~~~~~~~~~L~~L~l~~c~  253 (311)
                      -...-   .......|.|+.|.++.|.
T Consensus       286 a~~~l---a~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  286 AALAL---AACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHH---HHHHhcchhhHHhcCCccc
Confidence            00000   0011127889999998864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.29  E-value=0.0025  Score=60.54  Aligned_cols=85  Identities=24%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|+.|+|+.|.+..+....     ...+ +|..|.+++ +.++.+..   +.++.+|+.|+++.+- +.+-.    
T Consensus       206 r~l~~LkhLDlsyN~L~~vp~l~-----~~gc-~L~~L~lrn-N~l~tL~g---ie~LksL~~LDlsyNl-l~~hs----  270 (1096)
T KOG1859|consen  206 RRLPKLKHLDLSYNCLRHVPQLS-----MVGC-KLQLLNLRN-NALTTLRG---IENLKSLYGLDLSYNL-LSEHS----  270 (1096)
T ss_pred             Hhcccccccccccchhccccccc-----hhhh-hheeeeecc-cHHHhhhh---HHhhhhhhccchhHhh-hhcch----
Confidence            44778888888888666652211     1122 377787777 34444422   4567778888888764 32221    


Q ss_pred             ccCcCCcccCCccCeEecccCc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~  253 (311)
                        +-.+.-.+..|+.|++.+.|
T Consensus       271 --eL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  271 --ELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             --hhhHHHHHHHHHHHhhcCCc
Confidence              11112225566677776644

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.50  E-value=0.092  Score=24.37  Aligned_cols=11  Identities=18%  Similarity=0.054  Sum_probs=4.2

Q ss_pred             cccEEEEecCC
Q 021510          269 ALEILLVYGCD  279 (311)
Q Consensus       269 ~L~~L~i~~c~  279 (311)
                      +|+.|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            34444444444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.11  E-value=0.25  Score=40.06  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      .+...+++++|.+..+       ..+..++.|..|.+.+ ++++.+.| ....-++.|..|.+.++. +.++-..+    
T Consensus        42 d~~d~iDLtdNdl~~l-------~~lp~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~----  107 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-------DNLPHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLD----  107 (233)
T ss_pred             cccceecccccchhhc-------ccCCCccccceEEecC-Ccceeecc-chhhhccccceEEecCcc-hhhhhhcc----
Confidence            4455666777754443       3345667788888877 56776644 334557788888888876 55542222    


Q ss_pred             cCCcccCCccCeEecccCccccc-ccCCCcccCCCcccEEEEecCC
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRC-LYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                        +...+|+|+.|.+-+.|-=.. -+...+...+|+|+.|++.+-.
T Consensus       108 --pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  108 --PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             --hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence              222388888888766443111 1112222467888888887644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.10  E-value=0.09  Score=44.11  Aligned_cols=63  Identities=21%  Similarity=0.220  Sum_probs=30.3

Q ss_pred             CCCCccEEEEcCCC--CCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCC
Q 021510           33 SFNQLKNIEAYNCD--KLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLP  105 (311)
Q Consensus        33 ~l~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  105 (311)
                      .+++||+|.++...  -...+  ......+|+|+++.+++. .+..+..       ......+.+|..|++.+|+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l--~vl~e~~P~l~~l~ls~N-ki~~lst-------l~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGL--EVLAEKAPNLKVLNLSGN-KIKDLST-------LRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccccc--eehhhhCCceeEEeecCC-ccccccc-------cchhhhhcchhhhhcccCC
Confidence            45666777666541  11122  233445577777766663 2221110       0123445556666666663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.97  E-value=0.15  Score=25.37  Aligned_cols=15  Identities=47%  Similarity=0.627  Sum_probs=10.8

Q ss_pred             CccEEEeeeeeceee
Q 021510          156 NLEVLEISEINVDQI  170 (311)
Q Consensus       156 ~L~~L~l~~~~l~~i  170 (311)
                      +|++|++++|+++.+
T Consensus         1 ~L~~Ldls~n~l~~i   15 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSI   15 (22)
T ss_dssp             TESEEEETSSEESEE
T ss_pred             CccEEECCCCcCEeC
Confidence            467777777777766

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.66  E-value=0.14  Score=46.95  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=58.4

Q ss_pred             CccCCcccEEeeccccccccccccccc-ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLK-VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      ...|.+|+.|++.+. .++.+    .. ...+++|++|++++ ..++.+   ..+..++.|+.|++.++ .+..+.    
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i----~~~l~~~~~L~~L~ls~-N~I~~i---~~l~~l~~L~~L~l~~N-~i~~~~----  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKI----ENLLSSLVNLQVLDLSF-NKITKL---EGLSTLTLLKELNLSGN-LISDIS----  156 (414)
T ss_pred             cccccceeeeecccc-chhhc----ccchhhhhcchheeccc-cccccc---cchhhccchhhheeccC-cchhcc----
Confidence            467888999999984 57764    33 57899999999998 467776   44566777999999885 344433    


Q ss_pred             ccccccceeeecccceEecCCC
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~  104 (311)
                            +...+++|+.++++++
T Consensus       157 ------~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  157 ------GLESLKSLKLLDLSYN  172 (414)
T ss_pred             ------CCccchhhhcccCCcc
Confidence                  2334677888887775

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.28  E-value=0.27  Score=25.53  Aligned_cols=16  Identities=31%  Similarity=0.619  Sum_probs=12.4

Q ss_pred             CCcccEEEEecCCCcc
Q 021510          267 WPALEILLVYGCDKLK  282 (311)
Q Consensus       267 ~~~L~~L~i~~c~~l~  282 (311)
                      |+.|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4678888888888775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.18  E-value=2.3  Score=31.48  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +.+|+.+.+.. .+..+..     ..+..+++|+.+.+..  .+..+ +...+.+++.++++.+.+  .+..+.. .   
T Consensus        11 ~~~l~~i~~~~-~~~~I~~-----~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~-~---   75 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGE-----NAFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD-N---   75 (129)
T ss_dssp             -TT--EEEETS-T--EE-T-----TTTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T-T---
T ss_pred             CCCCCEEEECC-CeeEeCh-----hhcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc-c---
Confidence            56778888765 4555522     3456777888888876  35555 334467777888888865  2444421 1   


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                         .+..+++|+.+.+..  .++.+..... ..+ .|+.+.+.+  .+..++
T Consensus        76 ---~F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~  118 (129)
T PF13306_consen   76 ---AFSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIE  118 (129)
T ss_dssp             ---TTTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS--
T ss_pred             ---cccccccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEEC
Confidence               122266777777753  3555555442 234 677776643  444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=84.28  E-value=0.092  Score=39.95  Aligned_cols=84  Identities=17%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      .-+..++++.|.+-.+.+-   +..+..-..|+..++++ +.+++. |..+...++..+.|++++++ +.+++..  .-.
T Consensus        27 kE~h~ldLssc~lm~i~da---vy~l~~~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE--~Aa   98 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADA---VYMLSKGYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEE--LAA   98 (177)
T ss_pred             HHhhhcccccchhhHHHHH---HHHHhCCceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchhh-hhhchHH--Hhh
Confidence            3455666777744444110   00122234566666776 466655 65555666777778877776 6666532  212


Q ss_pred             cCCcccCCccCeEecccC
Q 021510          235 VIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c  252 (311)
                            +|.|++|.+...
T Consensus        99 ------m~aLr~lNl~~N  110 (177)
T KOG4579|consen   99 ------MPALRSLNLRFN  110 (177)
T ss_pred             ------hHHhhhcccccC
Confidence                  777777777764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.94  E-value=8  Score=28.49  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=54.8

Q ss_pred             CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccc
Q 021510          179 TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL  258 (311)
Q Consensus       179 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  258 (311)
                      .+..+++|+.+.+.+  .+..+ +...+..+++|+++.+.+.  ++.+..       ..+...++++.+.+.+  .+..+
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~-------~~F~~~~~l~~i~~~~--~~~~i   72 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGD-------NAFSNCKSLESITFPN--NLKSI   72 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-T-------TTTTT-TT-EEEEETS--TT-EE
T ss_pred             HHhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccce-------eeeecccccccccccc--ccccc
Confidence            356778999998874  45555 4444778889999999873  655521       1122266788888865  55566


Q ss_pred             cCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccc
Q 021510          259 YPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIP  300 (311)
Q Consensus       259 ~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~  300 (311)
                      .... ...++.|+.+.+..  +++.++...........+.++
T Consensus        73 ~~~~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~  111 (129)
T PF13306_consen   73 GDNA-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIP  111 (129)
T ss_dssp             -TTT-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-T
T ss_pred             cccc-ccccccccccccCc--cccEEchhhhcCCCceEEEEC
Confidence            5543 23588999998843  566666555544455555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 45/295 (15%), Positives = 88/295 (29%), Gaps = 80/295 (27%)

Query: 50  NIFWFSTTKCLPRLERIAVIN--CSKMKEIFSIGEE-VDNAIEKIEFAQ--LRSL----- 99
            IFW +   C      + ++     ++   ++   +   N   +I   Q  LR L     
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 100 ---SLGNLPEVTS--------FCCEV----------ETPSASPNRQVSQEESTAMYCSSE 138
               L  L  V +          C++          +  SA+    +S +  +      E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 139 ITLDISTLLFNEKVA-LPNLEVLEISEINVDQIW-HYNHLPVTFPRFQNLTRLIVWHCHK 196
               +     + +   LP  EVL  +   +  I         T+  ++++       C K
Sbjct: 303 -VKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVN------CDK 354

Query: 197 LKYIFSASMIRSLKQLQRLEICSC-EDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKL 255
           L  I  +    SL  L+  E     + L                VFP    +    L  +
Sbjct: 355 LTTIIES----SLNVLEPAEYRKMFDRL---------------SVFPPSAHIPTILLSLI 395

Query: 256 RCLYPGMHSSEWPALE----ILLVYGCDKLKIFAADLSQNNENDQLGIPAQQLPL 306
                      W  +     +++V    K  +    + +  +   + IP+  L L
Sbjct: 396 -----------WFDVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSIYLEL 435

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 49/301 (16%), Positives = 88/301 (29%), Gaps = 90/301 (29%)

Query: 4   CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRL 63
               P   S+I  ++ +                  N +  NCDKL+ I        L  L
Sbjct: 323 LTTNPRRLSIIAESIRDG------------LATWDNWKHVNCDKLTTII----ESSLNVL 366

Query: 64  ERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLP--EVTSFCCEVETPSASP 121
           E            +F            I    L SL   ++   +V     ++   S   
Sbjct: 367 EPAEYRKMFDRLSVFP--PSA-----HIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLV- 417

Query: 122 NRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVL-----------------EISE 164
            +Q             E T+ I ++    KV L N   L                 ++  
Sbjct: 418 EKQ-----------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 165 INVDQIWHYNHLP------------VTFPR-FQNLTRLIVWHCHKLKYIFSASMIRS--L 209
             +DQ + Y+H+               F   F +      +   K+++  +A       L
Sbjct: 467 PYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFR----FLEQKIRHDSTAWNASGSIL 521

Query: 210 KQLQRLE-----IC-SCEDLQEIISENRTDQVIPYFVF---PQLTTLKLQDLPKLRCLYP 260
             LQ+L+     IC +    + +++       I  F+      L   K  DL ++  +  
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNA------ILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 261 G 261
            
Sbjct: 576 D 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.62
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.5
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.43
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.33
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.32
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.29
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.03
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.03
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.0
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.98
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.98
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.98
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.98
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.96
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.95
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.77
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	80.29

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.9e-19  Score=158.46  Aligned_cols=235  Identities=20%  Similarity=0.274  Sum_probs=181.6

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .++++++|+++++. ++.+   +..++.+++|++|+++++. ++.+  +..++.+++|++|+++++. +..++.      
T Consensus        79 ~~~~l~~L~L~~n~-l~~l---p~~l~~l~~L~~L~L~~n~-l~~l--p~~~~~l~~L~~L~Ls~n~-l~~lp~------  144 (328)
T 4fcg_A           79 TQPGRVALELRSVP-LPQF---PDQAFRLSHLQHMTIDAAG-LMEL--PDTMQQFAGLETLTLARNP-LRALPA------  144 (328)
T ss_dssp             TSTTCCEEEEESSC-CSSC---CSCGGGGTTCSEEEEESSC-CCCC--CSCGGGGTTCSEEEEESCC-CCCCCG------
T ss_pred             cccceeEEEccCCC-chhc---ChhhhhCCCCCEEECCCCC-ccch--hHHHhccCCCCEEECCCCc-cccCcH------
Confidence            45889999999964 6665   4556889999999999974 5554  5667899999999999974 445542      


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                         .+..+++|++|++++|..++.++.....                            ......+..+++|++|++++|
T Consensus       145 ---~l~~l~~L~~L~L~~n~~~~~~p~~~~~----------------------------~~~~~~~~~l~~L~~L~L~~n  193 (328)
T 4fcg_A          145 ---SIASLNRLRELSIRACPELTELPEPLAS----------------------------TDASGEHQGLVNLQSLRLEWT  193 (328)
T ss_dssp             ---GGGGCTTCCEEEEEEETTCCCCCSCSEE----------------------------EC-CCCEEESTTCCEEEEEEE
T ss_pred             ---HHhcCcCCCEEECCCCCCccccChhHhh----------------------------ccchhhhccCCCCCEEECcCC
Confidence               4567899999999998777665542110                            000112344899999999999


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +++.+      |..+..+++|++|+++++ .+..+ +.. +..+++|++|++++|.....++.  ...      .+++|+
T Consensus       194 ~l~~l------p~~l~~l~~L~~L~L~~N-~l~~l-~~~-l~~l~~L~~L~Ls~n~~~~~~p~--~~~------~l~~L~  256 (328)
T 4fcg_A          194 GIRSL------PASIANLQNLKSLKIRNS-PLSAL-GPA-IHHLPKLEELDLRGCTALRNYPP--IFG------GRAPLK  256 (328)
T ss_dssp             CCCCC------CGGGGGCTTCCEEEEESS-CCCCC-CGG-GGGCTTCCEEECTTCTTCCBCCC--CTT------CCCCCC
T ss_pred             CcCcc------hHhhcCCCCCCEEEccCC-CCCcC-chh-hccCCCCCEEECcCCcchhhhHH--Hhc------CCCCCC
Confidence            88765      666788999999999996 45555 444 78899999999999985555432  222      289999


Q ss_pred             eEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      .|++++|..++.++...  ..+++|++|++++|+.++.+|..+........+.+|.+.+
T Consensus       257 ~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999999888765  6799999999999999999999999888888888876554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=7.2e-18  Score=148.33  Aligned_cols=210  Identities=20%  Similarity=0.255  Sum_probs=160.4

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+   +..++.+++|++|+++++ .++.+  +..+..+++|++|++++|..++.++..-...
T Consensus       101 ~~l~~L~~L~L~~n~-l~~l---p~~~~~l~~L~~L~Ls~n-~l~~l--p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAG-LMEL---PDTMQQFAGLETLTLARN-PLRAL--PASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             GGGTTCSEEEEESSC-CCCC---CSCGGGGTTCSEEEEESC-CCCCC--CGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             hhCCCCCEEECCCCC-ccch---hHHHhccCCCCEEECCCC-ccccC--cHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            447899999999964 5555   455689999999999997 45555  5678899999999999998887776422211


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                      .....+..+++|++|+++++ .++.++.                                     .+..+++|++|++++
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n-~l~~lp~-------------------------------------~l~~l~~L~~L~L~~  215 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWT-GIRSLPA-------------------------------------SIANLQNLKSLKIRN  215 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEE-CCCCCCG-------------------------------------GGGGCTTCCEEEEES
T ss_pred             cchhhhccCCCCCEEECcCC-CcCcchH-------------------------------------hhcCCCCCCEEEccC
Confidence            11223456899999999887 4544332                                     123479999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++.+      |..+..+++|++|++++|.....+ |.. +..+++|++|++++|.....++.  ..      ..+++|
T Consensus       216 N~l~~l------~~~l~~l~~L~~L~Ls~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~--~~------~~l~~L  279 (328)
T 4fcg_A          216 SPLSAL------GPAIHHLPKLEELDLRGCTALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPL--DI------HRLTQL  279 (328)
T ss_dssp             SCCCCC------CGGGGGCTTCCEEECTTCTTCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCT--TG------GGCTTC
T ss_pred             CCCCcC------chhhccCCCCCEEECcCCcchhhh-HHH-hcCCCCCCEEECCCCCchhhcch--hh------hcCCCC
Confidence            988866      556778999999999998777765 544 78899999999999986665532  22      228999


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEec
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG  277 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~  277 (311)
                      +.|++++|+.++.+|...  ..+++|+.+++..
T Consensus       280 ~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~  310 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLI--AQLPANCIILVPP  310 (328)
T ss_dssp             CEEECTTCTTCCCCCGGG--GGSCTTCEEECCG
T ss_pred             CEEeCCCCCchhhccHHH--hhccCceEEeCCH
Confidence            999999999999998766  6788888887753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=3.3e-15  Score=132.08  Aligned_cols=128  Identities=17%  Similarity=0.222  Sum_probs=75.1

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|++|++++|+++.+      +. +..+++|+.|+++++ .+..+ +  .+..+++|++|++++|. ++.+..   
T Consensus       218 ~~~~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~l~~n~-l~~~~~---  282 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDL------SP-LANLSQLTWLEIGTN-QISDI-N--AVKDLTKLKMLNVGSNQ-ISDISV---  282 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCC------GG-GTTCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCSSC-CCCCGG---
T ss_pred             hcCCcCCEEEccCCccCCC------cc-hhcCCCCCEEECCCC-ccCCC-h--hHhcCCCcCEEEccCCc-cCCChh---
Confidence            3456677777777655544      11 556677777777775 34433 2  25667777777777775 554421   


Q ss_pred             ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                            +..+++|+.|++++|. ++...... ...+++|++|++++|+ ++.++. +........+.+..+.|
T Consensus       283 ------~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          283 ------LNNLSQLNSLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ------GGGCTTCSEEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred             ------hcCCCCCCEEECcCCc-CCCcChhH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence                  1227788888888764 33332211 1357888888888886 444433 44455566666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=1e-14  Score=134.46  Aligned_cols=159  Identities=18%  Similarity=0.155  Sum_probs=93.5

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      .-.+++++|+++++ +++.+.  ...+..+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.     
T Consensus        29 ~~~~~l~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-----   97 (477)
T 2id5_A           29 GIPTETRLLDLGKN-RIKTLN--QDEFASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPL-----   97 (477)
T ss_dssp             CCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCT-----
T ss_pred             CCCCCCcEEECCCC-ccceEC--HhHccCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCc-CCccCc-----
Confidence            34467888888885 366642  345677888999998886 455542 3566788888999888853 444442     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                         ..+..+++|++|+++++ .+..+...                                    .+..+++|++|++++
T Consensus        98 ---~~~~~l~~L~~L~Ls~n-~i~~~~~~------------------------------------~~~~l~~L~~L~l~~  137 (477)
T 2id5_A           98 ---GVFTGLSNLTKLDISEN-KIVILLDY------------------------------------MFQDLYNLKSLEVGD  137 (477)
T ss_dssp             ---TSSTTCTTCCEEECTTS-CCCEECTT------------------------------------TTTTCTTCCEEEECC
T ss_pred             ---ccccCCCCCCEEECCCC-ccccCChh------------------------------------HccccccCCEEECCC
Confidence               12346788888888876 34333221                                    112245666666666


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      |.++.+.     +..+..+++|+.|++.++ .+..+ +...+..+++|++|+++++.
T Consensus       138 n~l~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          138 NDLVYIS-----HRAFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             TTCCEEC-----TTSSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCC
T ss_pred             CccceeC-----hhhccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCc
Confidence            6555441     233455556666666654 33333 33335555566666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=1.1e-15  Score=133.36  Aligned_cols=251  Identities=12%  Similarity=0.046  Sum_probs=143.3

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .++++|+++++. +.+....+..++.+++|++|+++++.++.... +..+..+++|++|+++++.....++.        
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~--------  119 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPD--------  119 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCG--------
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCH--------
Confidence            578899998864 44311124567888999999998655665433 45678889999999988754334432        


Q ss_pred             cceeeecccceEecCCCCCcc-ccccCCCCCCCCCCcccccccccccccccccccccccccccccccCC-CccEEEeeee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVT-SFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALP-NLEVLEISEI  165 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~  165 (311)
                       .+..+++|++|+++++ .++ .++....        ....+..+.+..   ..+..  .....+..++ +|++|++++|
T Consensus       120 -~~~~l~~L~~L~Ls~N-~l~~~~p~~~~--------~l~~L~~L~L~~---N~l~~--~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          120 -FLSQIKTLVTLDFSYN-ALSGTLPPSIS--------SLPNLVGITFDG---NRISG--AIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             -GGGGCTTCCEEECCSS-EEESCCCGGGG--------GCTTCCEEECCS---SCCEE--ECCGGGGCCCTTCCEEECCSS
T ss_pred             -HHhCCCCCCEEeCCCC-ccCCcCChHHh--------cCCCCCeEECcC---CcccC--cCCHHHhhhhhcCcEEECcCC
Confidence             3456788888888876 233 2221100        001111111111   11110  0112233455 7788888888


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +++..     .|..+..++ |+.|+++++ .+....+ ..+..+++|++|+++++. ++..+..  .      ..+++|+
T Consensus       185 ~l~~~-----~~~~~~~l~-L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~--~------~~l~~L~  247 (313)
T 1ogq_A          185 RLTGK-----IPPTFANLN-LAFVDLSRN-MLEGDAS-VLFGSDKNTQKIHLAKNS-LAFDLGK--V------GLSKNLN  247 (313)
T ss_dssp             EEEEE-----CCGGGGGCC-CSEEECCSS-EEEECCG-GGCCTTSCCSEEECCSSE-ECCBGGG--C------CCCTTCC
T ss_pred             eeecc-----CChHHhCCc-ccEEECcCC-cccCcCC-HHHhcCCCCCEEECCCCc-eeeecCc--c------cccCCCC
Confidence            66643     134455555 888888775 3343323 336677888888888876 4433221  1      1277888


Q ss_pred             eEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      +|+++++.--..++...  ..+++|++|+++++.--..+|.. ........+.+..+.
T Consensus       248 ~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             EEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88888764333444333  46778888888887544466653 333344455555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.63  E-value=6.9e-15  Score=134.86  Aligned_cols=231  Identities=15%  Similarity=0.081  Sum_probs=154.5

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      .+-.+++++|+|+++ +++.+.  +..++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.    
T Consensus        71 ~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~----  140 (452)
T 3zyi_A           71 QGIPSNTRYLNLMEN-NIQMIQ--ADTFRHLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS----  140 (452)
T ss_dssp             SCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT----
T ss_pred             CCCCCCccEEECcCC-cCceEC--HHHcCCCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCCc-CCccCh----
Confidence            334468999999996 466642  345678999999999986 555542 3567789999999999864 555442    


Q ss_pred             cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS  163 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  163 (311)
                          ..+..+++|++|+++++ .++.++.....       ....+..+.+.........   + ...+..+++|++|+++
T Consensus       141 ----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-------~l~~L~~L~l~~~~~l~~i---~-~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          141 ----GAFEYLSKLRELWLRNN-PIESIPSYAFN-------RVPSLMRLDLGELKKLEYI---S-EGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             ----TTSSSCTTCCEEECCSC-CCCEECTTTTT-------TCTTCCEEECCCCTTCCEE---C-TTTTTTCTTCCEEECT
T ss_pred             ----hhhcccCCCCEEECCCC-CcceeCHhHHh-------cCCcccEEeCCCCCCcccc---C-hhhccCCCCCCEEECC
Confidence                23456889999999887 45555432211       1111222222221100000   0 1123457899999999


Q ss_pred             eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510          164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ  243 (311)
Q Consensus       164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  243 (311)
                      +|+++.+       +.+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. +..+... .      +..+++
T Consensus       205 ~n~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~------~~~l~~  267 (452)
T 3zyi_A          205 MCNIKDM-------PNLTPLVGLEELEMSGN-HFPEIRP-GSFHGLSSLKKLWVMNSQ-VSLIERN-A------FDGLAS  267 (452)
T ss_dssp             TSCCSSC-------CCCTTCTTCCEEECTTS-CCSEECG-GGGTTCTTCCEEECTTSC-CCEECTT-T------TTTCTT
T ss_pred             CCccccc-------ccccccccccEEECcCC-cCcccCc-ccccCccCCCEEEeCCCc-CceECHH-H------hcCCCC
Confidence            9988766       24678889999999996 5555534 347889999999999997 6665321 1      222899


Q ss_pred             cCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      |+.|+++++ +++.++.... ..+++|++|++.++|
T Consensus       268 L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          268 LVELNLAHN-NLSSLPHDLF-TPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCEEECCSS-CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred             CCEEECCCC-cCCccChHHh-ccccCCCEEEccCCC
Confidence            999999986 6777765542 368899999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.62  E-value=9.3e-15  Score=126.96  Aligned_cols=233  Identities=16%  Similarity=0.117  Sum_probs=141.2

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccc-cchhhhccCcccEEEEccccccceeccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIF-WFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      ....++|++|+++++. ++.+.  ...++.+++|++|+++++ .++... .+.....+++|++|+++++. +..++.   
T Consensus        24 ~~~~~~l~~L~L~~n~-l~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~---   95 (306)
T 2z66_A           24 TGIPSSATRLELESNK-LQSLP--HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS---   95 (306)
T ss_dssp             SCCCTTCCEEECCSSC-CCCCC--TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE---
T ss_pred             CCCCCCCCEEECCCCc-cCccC--HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChh---
Confidence            3445789999999964 66642  123578899999999986 444331 13445578999999999874 444442   


Q ss_pred             ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI  162 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  162 (311)
                            .+..+++|++|+++++ .++.++.....      .....+..+.+...   .+...  ....+..+++|++|++
T Consensus        96 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~~------~~l~~L~~L~l~~n---~l~~~--~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           96 ------NFLGLEQLEHLDFQHS-NLKQMSEFSVF------LSLRNLIYLDISHT---HTRVA--FNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             ------EEETCTTCCEEECTTS-EEESSTTTTTT------TTCTTCCEEECTTS---CCEEC--STTTTTTCTTCCEEEC
T ss_pred             ------hcCCCCCCCEEECCCC-cccccccchhh------hhccCCCEEECCCC---cCCcc--chhhcccCcCCCEEEC
Confidence                  3567899999999886 34443320000      01111122222211   11100  1112345788888888


Q ss_pred             eeeecee-eeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccC
Q 021510          163 SEINVDQ-IWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVF  241 (311)
Q Consensus       163 ~~~~l~~-i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  241 (311)
                      ++|.+.. .     .|..+..+++|++|+++++ .+....+ ..+..+++|++|++++|. ++.+... .      +..+
T Consensus       158 ~~n~l~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l  222 (306)
T 2z66_A          158 AGNSFQENF-----LPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF-P------YKCL  222 (306)
T ss_dssp             TTCEEGGGE-----ECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CSBCCSG-G------GTTC
T ss_pred             CCCcccccc-----chhHHhhCcCCCEEECCCC-CcCCcCH-HHhcCCCCCCEEECCCCc-cCccChh-h------ccCc
Confidence            8886654 1     1456677888888888886 4554523 336778888888888886 5554321 1      1227


Q ss_pred             CccCeEecccCcccccccCCCcccCC-CcccEEEEecCC
Q 021510          242 PQLTTLKLQDLPKLRCLYPGMHSSEW-PALEILLVYGCD  279 (311)
Q Consensus       242 ~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~c~  279 (311)
                      ++|+.|+++++. ++....... ..+ ++|++|++.+++
T Consensus       223 ~~L~~L~L~~N~-l~~~~~~~~-~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          223 NSLQVLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTSC-CCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred             ccCCEeECCCCC-CcccCHHHH-HhhhccCCEEEccCCC
Confidence            888888888864 444333221 345 478888888866

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.62  E-value=5.4e-15  Score=127.18  Aligned_cols=209  Identities=17%  Similarity=0.153  Sum_probs=133.9

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      ..++|++|+++++. ++.+.  ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++..+..+..      
T Consensus        30 ~~~~l~~L~l~~n~-i~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~------   98 (285)
T 1ozn_A           30 IPAASQRIFLHGNR-ISHVP--AASFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDP------   98 (285)
T ss_dssp             CCTTCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT------
T ss_pred             CCCCceEEEeeCCc-CCccC--HHHcccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCH------
Confidence            44677777777743 55532  223567777888888775 444432 34556677788888777654555431      


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                        ..+..+++|++|+++++ .++.+..                                    ..+..+++|++|++++|
T Consensus        99 --~~~~~l~~L~~L~l~~n-~l~~~~~------------------------------------~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           99 --ATFHGLGRLHTLHLDRC-GLQELGP------------------------------------GLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             --TTTTTCTTCCEEECTTS-CCCCCCT------------------------------------TTTTTCTTCCEEECCSS
T ss_pred             --HHhcCCcCCCEEECCCC-cCCEECH------------------------------------hHhhCCcCCCEEECCCC
Confidence              12345677777777776 2333211                                    11234788999999998


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +++.+     .+..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. +..+... ..      ..+++|+
T Consensus       140 ~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~------~~l~~L~  204 (285)
T 1ozn_A          140 ALQAL-----PDDTFRDLGNLTHLFLHGN-RISSV-PERAFRGLHSLDRLLLHQNR-VAHVHPH-AF------RDLGRLM  204 (285)
T ss_dssp             CCCCC-----CTTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTT-TT------TTCTTCC
T ss_pred             ccccc-----CHhHhccCCCccEEECCCC-ccccc-CHHHhcCccccCEEECCCCc-ccccCHh-Hc------cCccccc
Confidence            77765     1234677889999999885 55555 44446778899999999887 6655321 11      2278899


Q ss_pred             eEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                      .|+++++ +++.++... ...+++|++|++.+++-.
T Consensus       205 ~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          205 TLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSCEE
T ss_pred             EeeCCCC-cCCcCCHHH-cccCcccCEEeccCCCcc
Confidence            9999885 555554321 136788999999887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=1.4e-14  Score=121.42  Aligned_cols=102  Identities=15%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             EEEeeee-eceeeeccCCCCCCCCCCCccc-EEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcC
Q 021510          159 VLEISEI-NVDQIWHYNHLPVTFPRFQNLT-RLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI  236 (311)
Q Consensus       159 ~L~l~~~-~l~~i~~~~~~p~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  236 (311)
                      +|++++| +++.+.     +..+..+++|+ .|+++++ .++.+ +...+.. ++|++|++++|+.++.+... ..    
T Consensus       134 ~L~l~~N~~l~~i~-----~~~~~~l~~L~~~L~l~~n-~l~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~-~~----  200 (239)
T 2xwt_C          134 ILEITDNPYMTSIP-----VNAFQGLCNETLTLKLYNN-GFTSV-QGYAFNG-TKLDAVYLNKNKYLTVIDKD-AF----  200 (239)
T ss_dssp             EEEEESCTTCCEEC-----TTTTTTTBSSEEEEECCSC-CCCEE-CTTTTTT-CEEEEEECTTCTTCCEECTT-TT----
T ss_pred             EEECCCCcchhhcC-----cccccchhcceeEEEcCCC-CCccc-CHhhcCC-CCCCEEEcCCCCCcccCCHH-Hh----
Confidence            6666665 555551     12244555566 6665553 33333 3222222 45666666655435444211 11    


Q ss_pred             CcccC-CccCeEecccCcccccccCCCcccCCCcccEEEEecCCC
Q 021510          237 PYFVF-PQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDK  280 (311)
Q Consensus       237 ~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~  280 (311)
                        ..+ ++|+.|++++ ..++.++..    .+++|+.|++.++++
T Consensus       201 --~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          201 --GGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             --TTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred             --hccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence              114 5566666655 344444432    355566666555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.61  E-value=9.5e-15  Score=133.48  Aligned_cols=232  Identities=15%  Similarity=0.122  Sum_probs=155.1

Q ss_pred             CCccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510            3 GCDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      +.+-.++++.|+|+++. ++.+.  ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++ .+..++.   
T Consensus        59 P~~~~~~l~~L~L~~n~-i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~---  129 (440)
T 3zyj_A           59 PDGISTNTRLLNLHENQ-IQIIK--VNSFKHLRHLEILQLSRN-HIRTIE-IGAFNGLANLNTLELFDN-RLTTIPN---  129 (440)
T ss_dssp             CSCCCTTCSEEECCSCC-CCEEC--TTTTSSCSSCCEEECCSS-CCCEEC-GGGGTTCSSCCEEECCSS-CCSSCCT---
T ss_pred             CCCCCCCCcEEEccCCc-CCeeC--HHHhhCCCCCCEEECCCC-cCCccC-hhhccCCccCCEEECCCC-cCCeeCH---
Confidence            34455789999999964 66642  345688999999999986 455542 456778999999999986 4555442   


Q ss_pred             ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI  162 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  162 (311)
                           ..+..+++|++|+++++ .++.++.....       ....+..+.+.........   + ...+..+++|++|++
T Consensus       130 -----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-------~l~~L~~L~l~~~~~l~~i---~-~~~~~~l~~L~~L~L  192 (440)
T 3zyj_A          130 -----GAFVYLSKLKELWLRNN-PIESIPSYAFN-------RIPSLRRLDLGELKRLSYI---S-EGAFEGLSNLRYLNL  192 (440)
T ss_dssp             -----TTSCSCSSCCEEECCSC-CCCEECTTTTT-------TCTTCCEEECCCCTTCCEE---C-TTTTTTCSSCCEEEC
T ss_pred             -----hHhhccccCceeeCCCC-cccccCHHHhh-------hCcccCEeCCCCCCCccee---C-cchhhcccccCeecC
Confidence                 23457789999999887 45555432211       1111222222221100000   0 112345789999999


Q ss_pred             eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCC
Q 021510          163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFP  242 (311)
Q Consensus       163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  242 (311)
                      ++|+++.+       +.+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. ++.+... .      +..++
T Consensus       193 ~~n~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~------~~~l~  255 (440)
T 3zyj_A          193 AMCNLREI-------PNLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIERN-A------FDNLQ  255 (440)
T ss_dssp             TTSCCSSC-------CCCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTT-S------STTCT
T ss_pred             CCCcCccc-------cccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCCCc-eeEEChh-h------hcCCC
Confidence            99988766       24678889999999996 5665634 347889999999999987 7766421 1      22389


Q ss_pred             ccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          243 QLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       243 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +|+.|+++++ +++.++.... ..+++|+.|++.++|
T Consensus       256 ~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          256 SLVEINLAHN-NLTLLPHDLF-TPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTS-CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCccChhHh-ccccCCCEEEcCCCC
Confidence            9999999985 6777765442 368899999998876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=3.3e-14  Score=134.95  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=74.5

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|++|++++|++....    .+..+..+++|+.|++++|. +....+ ..+..+++|++|++++|. +......  
T Consensus       397 ~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--  467 (606)
T 3t6q_A          397 KECPQLELLDLAFTRLKVKD----AQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGNH-FPKGNIQ--  467 (606)
T ss_dssp             TTCTTCSEEECTTCCEECCT----TCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTCB-CGGGEEC--
T ss_pred             cCCccCCeEECCCCcCCCcc----cchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCCC-CCccccc--
Confidence            34567777777777555431    11235667777777777753 333323 235667777777777776 4321100  


Q ss_pred             ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                        ....+..+++|+.|++++| +++.+..... ..+++|++|++++|.--...|..+...... .+.+..++
T Consensus       468 --~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          468 --KTNSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             --SSCGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             --cchhhccCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence              0011223777778877776 3444432221 356777888877775444444444444444 45444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=3.5e-15  Score=130.49  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +++|++|+++++ +++.+.  +..++.+++|++|+++++. +....  + +..+++|++|+++++. +..++        
T Consensus        33 ~~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--------   96 (317)
T 3o53_A           33 AWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQELL--------   96 (317)
T ss_dssp             GGGCSEEECTTS-CCCCCC--HHHHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSE-EEEEE--------
T ss_pred             CCCCCEEECcCC-ccCcCC--HHHhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCc-ccccc--------
Confidence            457888888875 355531  2345677888888887753 44431  2 6677788888887753 33322        


Q ss_pred             ccceeeecccceEecCCCCCcccc
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                           ..++|++|+++++ .++.+
T Consensus        97 -----~~~~L~~L~l~~n-~l~~~  114 (317)
T 3o53_A           97 -----VGPSIETLHAANN-NISRV  114 (317)
T ss_dssp             -----ECTTCCEEECCSS-CCSEE
T ss_pred             -----CCCCcCEEECCCC-ccCCc
Confidence                 3467777777775 34443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=2e-14  Score=127.02  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510          180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY  259 (311)
Q Consensus       180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  259 (311)
                      +..+++|++|++++| .+... +.  +..+++|++|++++|. ++.+.   .      +..+++|+.|++++| .++.++
T Consensus       217 ~~~~~~L~~L~l~~n-~l~~~-~~--~~~l~~L~~L~l~~n~-l~~~~---~------~~~l~~L~~L~l~~n-~l~~~~  281 (347)
T 4fmz_A          217 VANMTRLNSLKIGNN-KITDL-SP--LANLSQLTWLEIGTNQ-ISDIN---A------VKDLTKLKMLNVGSN-QISDIS  281 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCG---G------GTTCTTCCEEECCSS-CCCCCG
T ss_pred             hhcCCcCCEEEccCC-ccCCC-cc--hhcCCCCCEEECCCCc-cCCCh---h------HhcCCCcCEEEccCC-ccCCCh
Confidence            445667777777775 33433 21  5667777777777775 55441   1      122788888888886 555553


Q ss_pred             CCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          260 PGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       260 ~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      .   ...+++|++|++++|.--...+..+........+.+..+.+
T Consensus       282 ~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          282 V---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             G---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             h---hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            2   24678899999998864444444455555566666655543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=1e-14  Score=127.25  Aligned_cols=226  Identities=15%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             CCccEEEEcCCCCCc--ccccchhhhccCcccEEEEccccccc-eecccccccccccceeeecccceEecCCCCCcc-cc
Q 021510           35 NQLKNIEAYNCDKLS--NIFWFSTTKCLPRLERIAVINCSKMK-EIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVT-SF  110 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l  110 (311)
                      .+++.|+++++.--.  .+  +..+..+++|++|+++++..+. .++         ..+..+++|++|+++++. ++ .+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~~p---------~~l~~l~~L~~L~Ls~n~-l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIP---------PAIAKLTQLHYLYITHTN-VSGAI  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESCCC---------GGGGGCTTCSEEEEEEEC-CEEEC
T ss_pred             ceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccccCC---------hhHhcCCCCCEEECcCCe-eCCcC
Confidence            689999999975432  23  5678899999999999755554 333         245678999999999873 43 33


Q ss_pred             ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCC-cccEE
Q 021510          111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQ-NLTRL  189 (311)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~-~L~~L  189 (311)
                      +....        ....+..+.+.   ...+..  .....+..+++|++|++++|.++..     .|..+..++ +|++|
T Consensus       118 p~~~~--------~l~~L~~L~Ls---~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          118 PDFLS--------QIKTLVTLDFS---YNALSG--TLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFSKLFTSM  179 (313)
T ss_dssp             CGGGG--------GCTTCCEEECC---SSEEES--CCCGGGGGCTTCCEEECCSSCCEEE-----CCGGGGCCCTTCCEE
T ss_pred             CHHHh--------CCCCCCEEeCC---CCccCC--cCChHHhcCCCCCeEECcCCcccCc-----CCHHHhhhhhcCcEE
Confidence            32110        11111222222   111111  1112345578889999988877743     255566776 88999


Q ss_pred             EEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCc
Q 021510          190 IVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPA  269 (311)
Q Consensus       190 ~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~  269 (311)
                      +++++. +....+.. +..++ |++|++++|. ++.... ..      +..+++|+.|+++++.--...+. .  ..+++
T Consensus       180 ~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls~N~-l~~~~~-~~------~~~l~~L~~L~L~~N~l~~~~~~-~--~~l~~  245 (313)
T 1ogq_A          180 TISRNR-LTGKIPPT-FANLN-LAFVDLSRNM-LEGDAS-VL------FGSDKNTQKIHLAKNSLAFDLGK-V--GLSKN  245 (313)
T ss_dssp             ECCSSE-EEEECCGG-GGGCC-CSEEECCSSE-EEECCG-GG------CCTTSCCSEEECCSSEECCBGGG-C--CCCTT
T ss_pred             ECcCCe-eeccCChH-HhCCc-ccEEECcCCc-ccCcCC-HH------HhcCCCCCEEECCCCceeeecCc-c--cccCC
Confidence            888863 33332443 56665 9999998886 554432 11      12289999999998644323322 2  46799


Q ss_pred             ccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          270 LEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       270 L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      |++|++++|.--..+|..+........+.+..+++
T Consensus       246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            99999999876658888888777788888877764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=1e-14  Score=138.45  Aligned_cols=88  Identities=14%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. +..+    +.+ .+++|++|+++++..+...    ....+++|++|+++++. +..+...    
T Consensus       304 ~~~~~L~~L~l~~n~-l~~l----p~~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~----  368 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQ-LKQF----PTL-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCC----  368 (606)
T ss_dssp             CTTCCCSEEEEESCC-CSSC----CCC-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEEC----
T ss_pred             cccccCCEEEccccc-Cccc----ccC-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcch----
Confidence            456788899999875 4554    234 7888888888887555433    34567888888888763 2222100    


Q ss_pred             ccccceeeecccceEecCCCCCcccc
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                        ...+..+++|++|+++++. ++.+
T Consensus       369 --~~~~~~~~~L~~L~L~~n~-l~~~  391 (606)
T 3vq2_A          369 --SYSDLGTNSLRHLDLSFNG-AIIM  391 (606)
T ss_dssp             --CHHHHCCSCCCEEECCSCS-EEEE
T ss_pred             --hhhhccCCcccEeECCCCc-cccc
Confidence              0123456677777777663 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=4.9e-14  Score=129.96  Aligned_cols=260  Identities=17%  Similarity=0.212  Sum_probs=138.9

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ...+++|++|+|+++ .++.+  .+..++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..+..    
T Consensus        52 ~~~l~~L~~L~L~~n-~i~~~--~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~----  121 (477)
T 2id5_A           52 FASFPHLEELELNEN-IVSAV--EPGAFNNLFNLRTLGLRSN-RLKLI-PLGVFTGLSNLTKLDISENK-IVILLD----  121 (477)
T ss_dssp             TTTCTTCCEEECTTS-CCCEE--CTTTTTTCTTCCEEECCSS-CCCSC-CTTSSTTCTTCCEEECTTSC-CCEECT----
T ss_pred             ccCCCCCCEEECCCC-ccCEe--ChhhhhCCccCCEEECCCC-cCCcc-CcccccCCCCCCEEECCCCc-cccCCh----
Confidence            345789999999986 46553  2345678899999999886 45554 23456788999999998864 333321    


Q ss_pred             cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS  163 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  163 (311)
                          ..+..+++|++|+++++ .++.+......       ....+..+.+...   .+..-.  ...+..+++|+.|+++
T Consensus       122 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-------~l~~L~~L~l~~n---~l~~~~--~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          122 ----YMFQDLYNLKSLEVGDN-DLVYISHRAFS-------GLNSLEQLTLEKC---NLTSIP--TEALSHLHGLIVLRLR  184 (477)
T ss_dssp             ----TTTTTCTTCCEEEECCT-TCCEECTTSST-------TCTTCCEEEEESC---CCSSCC--HHHHTTCTTCCEEEEE
T ss_pred             ----hHccccccCCEEECCCC-ccceeChhhcc-------CCCCCCEEECCCC---cCcccC--hhHhcccCCCcEEeCC
Confidence                12345677777777765 33333221111       0001111111110   000000  0011234455555555


Q ss_pred             eeeceeeeccCC-------------------CCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510          164 EINVDQIWHYNH-------------------LPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ  224 (311)
Q Consensus       164 ~~~l~~i~~~~~-------------------~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  224 (311)
                      +|.+..+.....                   .|.......+|++|+++++ .++.+ +...+..+++|++|+++++. ++
T Consensus       185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~  261 (477)
T 2id5_A          185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNP-IS  261 (477)
T ss_dssp             SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSC-CC
T ss_pred             CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCc-CC
Confidence            544443311000                   0222222335556666554 34444 43446677777888877776 55


Q ss_pred             eecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCcccccccc
Q 021510          225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQ  303 (311)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~  303 (311)
                      .+...       .+..+++|+.|+++++ +++.+.... ...+++|++|+++++ +++.++... ........+.+..+.
T Consensus       262 ~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          262 TIEGS-------MLHELLRLQEIQLVGG-QLAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EECTT-------SCTTCTTCCEEECCSS-CCSEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ccChh-------hccccccCCEEECCCC-ccceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            55321       1122778888888875 455553332 146788899988887 566666443 333445555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=8.6e-15  Score=142.81  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             CCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          241 FPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       241 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      +++|+.|+++++.--..+|...  ..+++|++|+++++.--..+|..+........+.++.++
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             cccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            5555555555543333444333  345666666666665555666666666666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.2e-14  Score=134.60  Aligned_cols=218  Identities=13%  Similarity=0.114  Sum_probs=120.2

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|++|+|+++ .+..+.  +..++.+++|++|++++|. +....  + +..+++|++|++++| .+..++       
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~-------   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQELL-------   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCC--GGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSS-EEEEEE-------
T ss_pred             cCCCccEEEeeCC-cCCCCC--HHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCC-cCCCCC-------
Confidence            4568999999986 465531  2456788999999998864 54442  2 678899999999886 344433       


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                            ..++|++|+++++ .++.++....          ..+..+.+..   +.+....  ...+..+++|+.|++++|
T Consensus        97 ------~~~~L~~L~L~~N-~l~~~~~~~l----------~~L~~L~L~~---N~l~~~~--~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           97 ------VGPSIETLHAANN-NISRVSCSRG----------QGKKNIYLAN---NKITMLR--DLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             ------ECTTCCEEECCSS-CCCCEEECCC----------SSCEEEECCS---SCCCSGG--GBCGGGGSSEEEEECTTS
T ss_pred             ------CCCCcCEEECcCC-cCCCCCcccc----------CCCCEEECCC---CCCCCCC--chhhcCCCCCCEEECCCC
Confidence                  3378888888886 4444433110          0011111111   0110000  011233566666666666


Q ss_pred             eceeeeccCCCCCCCC-CCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          166 NVDQIWHYNHLPVTFP-RFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      .++.+.     |..+. .+++|+.|+++++ .+... +.  ...+++|++|++++|. ++.++..  .      ..+++|
T Consensus       155 ~l~~~~-----~~~l~~~l~~L~~L~Ls~N-~l~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~--~------~~l~~L  216 (487)
T 3oja_A          155 EIDTVN-----FAELAASSDTLEHLNLQYN-FIYDV-KG--QVVFAKLKTLDLSSNK-LAFMGPE--F------QSAAGV  216 (487)
T ss_dssp             CCCEEE-----GGGGGGGTTTCCEEECTTS-CCCEE-EC--CCCCTTCCEEECCSSC-CCEECGG--G------GGGTTC
T ss_pred             CCCCcC-----hHHHhhhCCcccEEecCCC-ccccc-cc--cccCCCCCEEECCCCC-CCCCCHh--H------cCCCCc
Confidence            555541     22222 4566666666664 33333 21  2246666667766665 5554321  1      126667


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                      +.|+++++ .++.++...  ..+++|+.|++.+++-.
T Consensus       217 ~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          217 TWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SEEECTTS-CCCEECTTC--CCCTTCCEEECTTCCBC
T ss_pred             cEEEecCC-cCcccchhh--ccCCCCCEEEcCCCCCc
Confidence            77777663 455555443  34566777777666544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=2e-14  Score=140.20  Aligned_cols=99  Identities=16%  Similarity=0.039  Sum_probs=71.5

Q ss_pred             CCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccc
Q 021510          178 VTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC  257 (311)
Q Consensus       178 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  257 (311)
                      ..+..+++|+.|+++++.-...+ |.. ++.+++|+.|+++++. ++..+. +...      .+++|+.|+++++.--..
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~Ls~N~-l~g~ip-~~l~------~L~~L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYI-PKE-IGSMPYLFILNLGHND-ISGSIP-DEVG------DLRGLNILDLSSNKLDGR  695 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCC-CGG-GGGCTTCCEEECCSSC-CCSCCC-GGGG------GCTTCCEEECCSSCCEEC
T ss_pred             hhhhccccccEEECcCCcccccC-CHH-HhccccCCEEeCcCCc-cCCCCC-hHHh------CCCCCCEEECCCCcccCc
Confidence            34556788999999986433333 655 7889999999999997 553332 1222      289999999999765556


Q ss_pred             ccCCCcccCCCcccEEEEecCCCcccccccc
Q 021510          258 LYPGMHSSEWPALEILLVYGCDKLKIFAADL  288 (311)
Q Consensus       258 l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~  288 (311)
                      +|...  ..+++|++|++++++--..+|..+
T Consensus       696 ip~~l--~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          696 IPQAM--SALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             CCGGG--GGCCCCSEEECCSSEEEEECCSSS
T ss_pred             CChHH--hCCCCCCEEECcCCcccccCCCch
Confidence            66554  578999999999987777788653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=2.8e-15  Score=143.18  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=148.3

Q ss_pred             cccccCCCCccEEEEcCCCCCcc------------------cccchhhh--ccCcccEEEEccccccceecccccccccc
Q 021510           28 RLKVESFNQLKNIEAYNCDKLSN------------------IFWFSTTK--CLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus        28 ~~~~~~l~~L~~L~l~~c~~l~~------------------~~~~~~~~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      +..++.+++|++|+++++. ++.                  +  |..++  ++++|++|++++|.....++.        
T Consensus       199 p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i--p~~l~~~~l~~L~~L~L~~n~l~~~~p~--------  267 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK--TEDLKWDNLKDLTDVEVYNCPNLTKLPT--------  267 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEECCTTCSSCCT--------
T ss_pred             CHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC--chhhhhcccCCCCEEEecCCcCCccChH--------
Confidence            3457889999999999975 665                  4  55666  899999999999876666552        


Q ss_pred             cceeeecccceEecCCCCCccc--cccCCCCCCCCCCccccccccccccccccccccccccccc--ccccCCCccEEEee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTS--FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFN--EKVALPNLEVLEIS  163 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~  163 (311)
                       .+..+++|++|+++++..++.  +|.....-.  .......+..+.+.   ...+. .  +..  .+..+++|++|+++
T Consensus       268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~--~~~~l~~L~~L~L~---~n~l~-~--ip~~~~l~~l~~L~~L~L~  338 (636)
T 4eco_A          268 -FLKALPEMQLINVACNRGISGEQLKDDWQALA--DAPVGEKIQIIYIG---YNNLK-T--FPVETSLQKMKKLGMLECL  338 (636)
T ss_dssp             -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH--HSGGGGTCCEEECC---SSCCS-S--CCCHHHHTTCTTCCEEECC
T ss_pred             -HHhcCCCCCEEECcCCCCCccccchHHHHhhh--ccccCCCCCEEECC---CCcCC-c--cCchhhhccCCCCCEEeCc
Confidence             456788999999998864553  432110000  00000111112222   11111 1  112  34568899999999


Q ss_pred             eeece-eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCC-CcEEEEccccccceecccccccCcCCcccC
Q 021510          164 EINVD-QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQ-LQRLEICSCEDLQEIISENRTDQVIPYFVF  241 (311)
Q Consensus       164 ~~~l~-~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  241 (311)
                      +|+++ .+      | .+..+++|+.|+++++ .+..+ |.. +..+++ |++|+++++. ++.++.  ....    ..+
T Consensus       339 ~N~l~g~i------p-~~~~l~~L~~L~L~~N-~l~~l-p~~-l~~l~~~L~~L~Ls~N~-l~~lp~--~~~~----~~l  401 (636)
T 4eco_A          339 YNQLEGKL------P-AFGSEIKLASLNLAYN-QITEI-PAN-FCGFTEQVENLSFAHNK-LKYIPN--IFDA----KSV  401 (636)
T ss_dssp             SCCCEEEC------C-CCEEEEEESEEECCSS-EEEEC-CTT-SEEECTTCCEEECCSSC-CSSCCS--CCCT----TCS
T ss_pred             CCcCccch------h-hhCCCCCCCEEECCCC-ccccc-cHh-hhhhcccCcEEEccCCc-Ccccch--hhhh----ccc
Confidence            99877 54      4 6677889999999886 44444 544 677888 9999999987 665532  1111    115


Q ss_pred             CccCeEecccCcccccccCCC-----cccCCCcccEEEEecCCCcccccccccc-CCCCCcccccccc
Q 021510          242 PQLTTLKLQDLPKLRCLYPGM-----HSSEWPALEILLVYGCDKLKIFAADLSQ-NNENDQLGIPAQQ  303 (311)
Q Consensus       242 ~~L~~L~l~~c~~L~~l~~~~-----~~~~~~~L~~L~i~~c~~l~~lp~~~~~-~~~~~~~~~~~~~  303 (311)
                      ++|+.|+++++.--...+...     ....+++|++|++++| ++..+|..... ......+.+..++
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence            589999999865433333222     0125678999999886 45577765443 3455566665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=1e-13  Score=126.89  Aligned_cols=111  Identities=18%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|++|++++|+++.+     .|..+..+++|++|+++++ .+..+ +...+..+++|++|++++|. ++.+... .
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~  366 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQ-S  366 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTT-T
T ss_pred             ccCCCCCEEECCCCccccc-----ChhHhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCCc-ccccChh-h
Confidence            3456666666666655554     1334556667777777664 34444 22335666777777777765 5544221 1


Q ss_pred             ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      .      ..+++|+.|+++++ +++.++.... ..+++|++|++.+++
T Consensus       367 ~------~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          367 F------LGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP  406 (455)
T ss_dssp             T------TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             c------cccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCC
Confidence            1      12677777777763 5555554321 356777777776644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.2e-13  Score=135.48  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             ccCCcccEEeeccccccccc--c-------------ccccccc--CCCCccEEEEcCCCCCcccccchhhhccCcccEEE
Q 021510            5 DAFPLLQSLILHNLINMERL--C-------------IDRLKVE--SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIA   67 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l--~-------------~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~   67 (311)
                      ..+++|++|+|+++. ++..  .             ..+..++  .+++|++|++++|.....+  |..+..+++|++|+
T Consensus       445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~  521 (876)
T 4ecn_A          445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLN  521 (876)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEE
T ss_pred             hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEE
Confidence            456788888888864 5550  0             0144445  7888888888887655554  46677888888888


Q ss_pred             Ecccc
Q 021510           68 VINCS   72 (311)
Q Consensus        68 i~~c~   72 (311)
                      ++++.
T Consensus       522 Ls~N~  526 (876)
T 4ecn_A          522 IACNR  526 (876)
T ss_dssp             CTTCT
T ss_pred             CcCCC
Confidence            88875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.9e-14  Score=126.40  Aligned_cols=242  Identities=13%  Similarity=0.096  Sum_probs=153.3

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ..-.++|++|+++++. ++++.  ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.    
T Consensus        48 ~~~~~~L~~L~l~~n~-i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~----  117 (353)
T 2z80_A           48 SGLTEAVKSLDLSNNR-ITYIS--NSDLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNY-LSNLSS----  117 (353)
T ss_dssp             TTCCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSSCCH----
T ss_pred             ccccccCcEEECCCCc-CcccC--HHHhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCc-CCcCCH----
Confidence            3445789999999964 66642  224688999999999987 566542 3557789999999999863 444432    


Q ss_pred             cccccceeeecccceEecCCCCCcccccc-CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCC-EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI  162 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  162 (311)
                          ..+..+++|++|+++++ .++.++. ....       ....+..+.+.....  ...-  ....+..+++|++|++
T Consensus       118 ----~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~-------~l~~L~~L~l~~n~~--~~~~--~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          118 ----SWFKPLSSLTFLNLLGN-PYKTLGETSLFS-------HLTKLQILRVGNMDT--FTKI--QRKDFAGLTFLEELEI  181 (353)
T ss_dssp             ----HHHTTCTTCSEEECTTC-CCSSSCSSCSCT-------TCTTCCEEEEEESSS--CCEE--CTTTTTTCCEEEEEEE
T ss_pred             ----hHhCCCccCCEEECCCC-CCcccCchhhhc-------cCCCCcEEECCCCcc--cccc--CHHHccCCCCCCEEEC
Confidence                12456789999999887 4555443 1111       111222222222100  0000  0122345789999999


Q ss_pred             eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc--C------
Q 021510          163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD--Q------  234 (311)
Q Consensus       163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~------  234 (311)
                      ++|+++.+     .|..+..+++|++|+++++. +..+ +...+..+++|++|+++++. ++......-..  .      
T Consensus       182 ~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~  253 (353)
T 2z80_A          182 DASDLQSY-----EPKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKK  253 (353)
T ss_dssp             EETTCCEE-----CTTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCE
T ss_pred             CCCCcCcc-----CHHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhc
Confidence            99977766     25667889999999999964 5555 55556778999999999987 55432110000  0      


Q ss_pred             ----------------cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          235 ----------------VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       235 ----------------~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                                      ...+..+++|+.|+++++ +++.++.... ..+++|++|++.+++-.
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence                            001223678888888875 5667665431 36788888988887643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=1.2e-13  Score=126.22  Aligned_cols=243  Identities=15%  Similarity=0.161  Sum_probs=135.8

Q ss_pred             ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccc
Q 021510           10 LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIE   89 (311)
Q Consensus        10 L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~   89 (311)
                      .++++..+ .+++.++.     +-.+++++|+++++ +++.+. +..+..+++|++|+++++. +..+..        ..
T Consensus        45 ~~~v~c~~-~~l~~iP~-----~~~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~~--------~~  107 (440)
T 3zyj_A           45 FSKVICVR-KNLREVPD-----GISTNTRLLNLHEN-QIQIIK-VNSFKHLRHLEILQLSRNH-IRTIEI--------GA  107 (440)
T ss_dssp             SCEEECCS-CCCSSCCS-----CCCTTCSEEECCSC-CCCEEC-TTTTSSCSSCCEEECCSSC-CCEECG--------GG
T ss_pred             CCEEEeCC-CCcCcCCC-----CCCCCCcEEEccCC-cCCeeC-HHHhhCCCCCCEEECCCCc-CCccCh--------hh
Confidence            34555555 34555422     33489999999996 466653 3567889999999999964 555442        23


Q ss_pred             eeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ece
Q 021510           90 KIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NVD  168 (311)
Q Consensus        90 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~  168 (311)
                      +..+++|++|+++++ +++.++.....       ....+..+.+..   ..+..-.  ...+..+++|++|++++| .+.
T Consensus       108 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-------~l~~L~~L~L~~---N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A          108 FNGLANLNTLELFDN-RLTTIPNGAFV-------YLSKLKELWLRN---NPIESIP--SYAFNRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             GTTCSSCCEEECCSS-CCSSCCTTTSC-------SCSSCCEEECCS---CCCCEEC--TTTTTTCTTCCEEECCCCTTCC
T ss_pred             ccCCccCCEEECCCC-cCCeeCHhHhh-------ccccCceeeCCC---CcccccC--HHHhhhCcccCEeCCCCCCCcc
Confidence            456899999999997 56655442111       001111122211   1111000  012234566677776665 455


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK  248 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  248 (311)
                      .+.     +..+..+++|++|+++++ .++.+ +.  +..+++|++|++++|. ++.+... .      +..+++|+.|+
T Consensus       175 ~i~-----~~~~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~  237 (440)
T 3zyj_A          175 YIS-----EGAFEGLSNLRYLNLAMC-NLREI-PN--LTPLIKLDELDLSGNH-LSAIRPG-S------FQGLMHLQKLW  237 (440)
T ss_dssp             EEC-----TTTTTTCSSCCEEECTTS-CCSSC-CC--CTTCSSCCEEECTTSC-CCEECTT-T------TTTCTTCCEEE
T ss_pred             eeC-----cchhhcccccCeecCCCC-cCccc-cc--cCCCcccCEEECCCCc-cCccChh-h------hccCccCCEEE
Confidence            441     123556667777777664 44434 21  4556677777777765 5554321 1      12277788888


Q ss_pred             cccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccc
Q 021510          249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQ  302 (311)
Q Consensus       249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~  302 (311)
                      ++++ +++.+..... ..+++|++|+++++ +++.+|.+. ........+.+..+
T Consensus       238 L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          238 MIQS-QIQVIERNAF-DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CTTC-CCCEECTTSS-TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCC-ceeEEChhhh-cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence            7774 4555544331 36788888888876 555555432 22333444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.57  E-value=9e-15  Score=139.70  Aligned_cols=256  Identities=14%  Similarity=0.188  Sum_probs=167.9

Q ss_pred             CccCCcccEEeecccccccc------------------ccccccccc--CCCCccEEEEcCCCCCcccccchhhhccCcc
Q 021510            4 CDAFPLLQSLILHNLINMER------------------LCIDRLKVE--SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRL   63 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~------------------l~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L   63 (311)
                      .+.+++|++|+++++. +++                  +   +..++  .+++|++|++++|.....+  |..++.+++|
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L  275 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKL--PTFLKALPEM  275 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCSSC--CTTTTTCSSC
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCccC--hHHHhcCCCC
Confidence            3467899999999975 666                  4   55567  9999999999998766555  5778899999


Q ss_pred             cEEEEccccccce--ecccccccccccceee------ecccceEecCCCCCcccccc--CCCCCCCCCCccccccccccc
Q 021510           64 ERIAVINCSKMKE--IFSIGEEVDNAIEKIE------FAQLRSLSLGNLPEVTSFCC--EVETPSASPNRQVSQEESTAM  133 (311)
Q Consensus        64 ~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~l~l  133 (311)
                      ++|+++++..+..  ++.         .+..      +++|++|+++++ +++.++.  ...        ....+..+.+
T Consensus       276 ~~L~Ls~n~~l~~~~lp~---------~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~--------~l~~L~~L~L  337 (636)
T 4eco_A          276 QLINVACNRGISGEQLKD---------DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ--------KMKKLGMLEC  337 (636)
T ss_dssp             CEEECTTCTTSCHHHHHH---------HHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT--------TCTTCCEEEC
T ss_pred             CEEECcCCCCCccccchH---------HHHhhhccccCCCCCEEECCCC-cCCccCchhhhc--------cCCCCCEEeC
Confidence            9999999874442  442         2333      389999999987 4545443  110        0111122222


Q ss_pred             ccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCc-ccEEEEecCCCCccccchHHHhc--cC
Q 021510          134 YCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQN-LTRLIVWHCHKLKYIFSASMIRS--LK  210 (311)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~-L~~L~i~~c~~l~~~~~~~~~~~--l~  210 (311)
                      .   ...+.+..+   .+..+++|++|++++|+++.+      |..+..+++ |+.|+++++. +..+ |.. +..  ++
T Consensus       338 ~---~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~l------p~~l~~l~~~L~~L~Ls~N~-l~~l-p~~-~~~~~l~  402 (636)
T 4eco_A          338 L---YNQLEGKLP---AFGSEIKLASLNLAYNQITEI------PANFCGFTEQVENLSFAHNK-LKYI-PNI-FDAKSVS  402 (636)
T ss_dssp             C---SCCCEEECC---CCEEEEEESEEECCSSEEEEC------CTTSEEECTTCCEEECCSSC-CSSC-CSC-CCTTCSS
T ss_pred             c---CCcCccchh---hhCCCCCCCEEECCCCccccc------cHhhhhhcccCcEEEccCCc-Cccc-chh-hhhcccC
Confidence            2   222221222   345578999999999988866      667888888 9999999964 5555 433 343  44


Q ss_pred             CCcEEEEccccccceeccccccc-CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510          211 QLQRLEICSCEDLQEIISENRTD-QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS  289 (311)
Q Consensus       211 ~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~  289 (311)
                      +|++|++++|. +...... ... .......+++|+.|+++++ +++.++... ...+++|++|++++|. +..+|.+..
T Consensus       403 ~L~~L~Ls~N~-l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~  477 (636)
T 4eco_A          403 VMSAIDFSYNE-IGSVDGK-NFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGNM-LTEIPKNSL  477 (636)
T ss_dssp             CEEEEECCSSC-TTTTTTC-SSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred             ccCEEECcCCc-CCCcchh-hhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCCC-CCCcCHHHh
Confidence            89999999997 5443211 111 0001112679999999985 566665533 2358999999999875 557886654


Q ss_pred             cCC--------CCCcccccccc
Q 021510          290 QNN--------ENDQLGIPAQQ  303 (311)
Q Consensus       290 ~~~--------~~~~~~~~~~~  303 (311)
                      ...        ....+.++.++
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSC
T ss_pred             ccccccccccCCccEEECcCCc
Confidence            433        45556665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=3e-14  Score=121.93  Aligned_cols=212  Identities=17%  Similarity=0.210  Sum_probs=143.5

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      ++|++|+++++ +++.+.  ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.        
T Consensus        28 ~~l~~L~ls~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------   93 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLG--SYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL--------   93 (276)
T ss_dssp             TTCCEEECTTC-CCCEEC--TTTTTTCTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECT--------
T ss_pred             CCccEEECCCC-cccccC--HhHhccccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCc-cCccCh--------
Confidence            46889999885 466642  225677889999999886 455542 3456778889999988864 333331        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV  167 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  167 (311)
                      ..+..+++|++|++.++ ++..++.                                    ..+..+++|++|++++|.+
T Consensus        94 ~~~~~l~~L~~L~l~~n-~l~~~~~------------------------------------~~~~~l~~L~~L~l~~n~l  136 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVET-NLASLEN------------------------------------FPIGHLKTLKELNVAHNLI  136 (276)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCSTT------------------------------------CCCTTCTTCCEEECCSSCC
T ss_pred             hhhcCCccccEEECCCC-CccccCc------------------------------------hhcccCCCCCEEECcCCcc
Confidence            13456788888888876 3333222                                    1123478999999999977


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc----EEEEccccccceecccccccCcCCcccCCc
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ----RLEICSCEDLQEIISENRTDQVIPYFVFPQ  243 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  243 (311)
                      +.+    ..|..+..+++|+.|+++++ .++.+ +...+..+++|+    +|+++++. ++.+...  ...      ..+
T Consensus       137 ~~~----~l~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~--~~~------~~~  201 (276)
T 2z62_A          137 QSF----KLPEYFSNLTNLEHLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPG--AFK------EIR  201 (276)
T ss_dssp             CCC----CCCGGGGGCTTCCEEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEECCSSC-CCEECTT--SSC------SCC
T ss_pred             cee----cCchhhccCCCCCEEECCCC-CCCcC-CHHHhhhhhhccccceeeecCCCc-ccccCcc--ccC------CCc
Confidence            753    12556778899999999996 45555 323355566666    89999987 7766431  111      458


Q ss_pred             cCeEecccCcccccccCCCcccCCCcccEEEEe------cCCCccccccc
Q 021510          244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVY------GCDKLKIFAAD  287 (311)
Q Consensus       244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~------~c~~l~~lp~~  287 (311)
                      |+.|+++++ +++.++.... ..+++|++|++.      +|+.++.+..+
T Consensus       202 L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          202 LKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             EEEEECCSS-CCSCCCTTTT-TTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             ccEEECCCC-ceeecCHhHh-cccccccEEEccCCcccccCCchHHHHHH
Confidence            999999986 4777765432 468999999999      57777665444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=1e-13  Score=121.74  Aligned_cols=229  Identities=18%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      .++|++|+++++ +++++.  ...++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++.       
T Consensus        51 ~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~-------  117 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIK--DGDFKNLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKNQ-LKELPE-------  117 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCS-------
T ss_pred             CCCCeEEECCCC-cCCEeC--hhhhccCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCCc-CCccCh-------
Confidence            356667777664 354431  123566677777777765 344332 3445667777777776653 333331       


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                          ..+++|++|+++++ .++.++.....       ....+..+.+..   ............+..+++|++|++++|+
T Consensus       118 ----~~~~~L~~L~l~~n-~l~~~~~~~~~-------~l~~L~~L~l~~---n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          118 ----KMPKTLQELRVHEN-EITKVRKSVFN-------GLNQMIVVELGT---NPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ----SCCTTCCEEECCSS-CCCBBCHHHHT-------TCTTCCEEECCS---SCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ----hhcccccEEECCCC-cccccCHhHhc-------CCccccEEECCC---CcCCccCcChhhccCCCCcCEEECCCCc
Confidence                11256666666654 23332211000       000111111111   1111000111223456777888887776


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      ++.+      |..+  .++|++|+++++ .+....+ ..+..+++|++|+++++. ++.+...       .+..+++|+.
T Consensus       183 l~~l------~~~~--~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~  244 (330)
T 1xku_A          183 ITTI------PQGL--PPSLTELHLDGN-KITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNG-------SLANTPHLRE  244 (330)
T ss_dssp             CCSC------CSSC--CTTCSEEECTTS-CCCEECT-GGGTTCTTCCEEECCSSC-CCEECTT-------TGGGSTTCCE
T ss_pred             cccC------Cccc--cccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CceeChh-------hccCCCCCCE
Confidence            6654      3222  257777777775 3444423 336677778888887776 5554321       1122677777


Q ss_pred             EecccCcccccccCCCcccCCCcccEEEEecCCCccccc
Q 021510          247 LKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       247 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                      |+++++ +++.++...  ..+++|++|++.+|+ ++.++
T Consensus       245 L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~-i~~~~  279 (330)
T 1xku_A          245 LHLNNN-KLVKVPGGL--ADHKYIQVVYLHNNN-ISAIG  279 (330)
T ss_dssp             EECCSS-CCSSCCTTT--TTCSSCCEEECCSSC-CCCCC
T ss_pred             EECCCC-cCccCChhh--ccCCCcCEEECCCCc-CCccC
Confidence            777775 555665543  456777777777653 44444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=1.3e-13  Score=126.41  Aligned_cols=242  Identities=15%  Similarity=0.129  Sum_probs=133.1

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      ..++..+ .+++.++.     +-.+++++|+++++ +++.+. +..+..+++|++|+++++ .+..++.        ..+
T Consensus        57 ~~v~c~~-~~l~~iP~-----~~~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~--------~~~  119 (452)
T 3zyi_A           57 SKVVCTR-RGLSEVPQ-----GIPSNTRYLNLMEN-NIQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIEV--------GAF  119 (452)
T ss_dssp             CEEECCS-SCCSSCCS-----CCCTTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECT--------TTT
T ss_pred             cEEEECC-CCcCccCC-----CCCCCccEEECcCC-cCceEC-HHHcCCCCCCCEEECCCC-ccCCcCh--------hhc
Confidence            4455444 23555422     23479999999996 566543 456788999999999996 4555442        234


Q ss_pred             eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ecee
Q 021510           91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NVDQ  169 (311)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~  169 (311)
                      ..+++|++|+++++ .++.++.....       ....+..+.+...   .+..-.  ...+..+++|++|++++| .+..
T Consensus       120 ~~l~~L~~L~L~~n-~l~~~~~~~~~-------~l~~L~~L~L~~N---~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~  186 (452)
T 3zyi_A          120 NGLASLNTLELFDN-WLTVIPSGAFE-------YLSKLRELWLRNN---PIESIP--SYAFNRVPSLMRLDLGELKKLEY  186 (452)
T ss_dssp             TTCTTCCEEECCSS-CCSBCCTTTSS-------SCTTCCEEECCSC---CCCEEC--TTTTTTCTTCCEEECCCCTTCCE
T ss_pred             cCcccCCEEECCCC-cCCccChhhhc-------ccCCCCEEECCCC---CcceeC--HhHHhcCCcccEEeCCCCCCccc
Confidence            57899999999997 46655442111       0011111222110   010000  011234566666666665 4444


Q ss_pred             eeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEec
Q 021510          170 IWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKL  249 (311)
Q Consensus       170 i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  249 (311)
                      +.     +..+..+++|++|+++++ .+..+ +  .+..+++|++|++++|. ++.+... .      +..+++|+.|++
T Consensus       187 i~-----~~~~~~l~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~L  249 (452)
T 3zyi_A          187 IS-----EGAFEGLFNLKYLNLGMC-NIKDM-P--NLTPLVGLEELEMSGNH-FPEIRPG-S------FHGLSSLKKLWV  249 (452)
T ss_dssp             EC-----TTTTTTCTTCCEEECTTS-CCSSC-C--CCTTCTTCCEEECTTSC-CSEECGG-G------GTTCTTCCEEEC
T ss_pred             cC-----hhhccCCCCCCEEECCCC-ccccc-c--cccccccccEEECcCCc-CcccCcc-c------ccCccCCCEEEe
Confidence            41     123455666666666664 33333 2  14456666677766665 5544221 1      122777888888


Q ss_pred             ccCcccccccCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccc
Q 021510          250 QDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQ  302 (311)
Q Consensus       250 ~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~  302 (311)
                      +++ +++.+..... ..+++|++|+++++ +++.+|.+. ........+.+..+
T Consensus       250 ~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          250 MNS-QVSLIERNAF-DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CCC-cCceECHHHh-cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence            774 4455543321 36788888888887 566666443 23333445555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=7.7e-14  Score=132.38  Aligned_cols=253  Identities=15%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|++.++. ++.+    +.+..+++|++|++++|.. ..+  + .+ .+++|++|+++++..+..+.      
T Consensus       282 ~~l~~L~~L~l~~~~-~~~l----~~l~~~~~L~~L~l~~n~l-~~l--p-~~-~l~~L~~L~l~~n~~~~~~~------  345 (606)
T 3vq2_A          282 HCLANVSAMSLAGVS-IKYL----EDVPKHFKWQSLSIIRCQL-KQF--P-TL-DLPFLKSLTLTMNKGSISFK------  345 (606)
T ss_dssp             GGGTTCSEEEEESCC-CCCC----CCCCTTCCCSEEEEESCCC-SSC--C-CC-CCSSCCEEEEESCSSCEECC------
T ss_pred             ccCCCCCEEEecCcc-chhh----hhccccccCCEEEcccccC-ccc--c-cC-CCCccceeeccCCcCccchh------
Confidence            346788888888864 4553    2567788888999988765 555  2 33 78889999988886554432      


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccc--------------------ccccccccc
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYC--------------------SSEITLDIS  144 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~--------------------~~~~~~~~~  144 (311)
                           ...+++|++|+++++ .++...........     ...+..+.+..                    +....+...
T Consensus       346 -----~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          346 -----KVALPSLSYLDLSRN-ALSFSGCCSYSDLG-----TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             -----CCCCTTCCEEECCSS-CEEEEEECCHHHHC-----CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred             -----hccCCCCCEEECcCC-ccCCCcchhhhhcc-----CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence                 346789999999886 34333100000000     00011111111                    000000000


Q ss_pred             cccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510          145 TLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ  224 (311)
Q Consensus       145 ~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  224 (311)
                      . ....+..+++|++|++++|.+...     .|..+..+++|++|+++++.......+. .+..+++|++|++++|. ++
T Consensus       415 ~-~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~  486 (606)
T 3vq2_A          415 T-EFSAFLSLEKLLYLDISYTNTKID-----FDGIFLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKCQ-LE  486 (606)
T ss_dssp             T-TTTTTTTCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CC
T ss_pred             c-ChhhhhccccCCEEECcCCCCCcc-----chhhhcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCCCc-CC
Confidence            0 001223345555666655544443     1334555666666666665322212122 24556666666666665 54


Q ss_pred             eecccccccCcCCcccCCccCeEecccCcccccc-cCCCcccCCCcccEEEEecCCCccccccccccCC-CCCccccccc
Q 021510          225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAADLSQNN-ENDQLGIPAQ  302 (311)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~-~~~~~~~~~~  302 (311)
                      .+... .      +..+++|+.|++++| +++.+ +...  ..+++|++|++++|. ++.+|.++.... ....+.+..+
T Consensus       487 ~~~~~-~------~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          487 QISWG-V------FDTLHRLQLLNMSHN-NLLFLDSSHY--NQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             EECTT-T------TTTCTTCCEEECCSS-CCSCEEGGGT--TTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             ccChh-h------hcccccCCEEECCCC-cCCCcCHHHc--cCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence            44221 1      112677777777776 34443 3222  356777778777764 666776544443 2455555444


Q ss_pred             c
Q 021510          303 Q  303 (311)
Q Consensus       303 ~  303 (311)
                      .
T Consensus       556 ~  556 (606)
T 3vq2_A          556 S  556 (606)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.56  E-value=1.3e-13  Score=123.80  Aligned_cols=86  Identities=14%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+.  ...++.+++|++|+++++. ++.+ ++..++.+++|++|+++++ .+..++.     
T Consensus        66 ~~l~~L~~L~L~~n~-i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~-----  134 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQ-IEEID--TYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERN-DLSSLPR-----  134 (390)
T ss_dssp             HHCCCCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-----
T ss_pred             cccccCcEEECCCCc-ccccC--hhhccCCCCcCEEECCCCC-CCcC-CHHHhcCCCCCCEEECCCC-ccCcCCH-----
Confidence            346889999998864 55532  2356778888899888864 5554 2345677888888888886 3444442     


Q ss_pred             ccccceeeecccceEecCCC
Q 021510           85 DNAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~  104 (311)
                         ..+..+++|++|+++++
T Consensus       135 ---~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A          135 ---GIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             ---TTTTTCTTCCEEECCSS
T ss_pred             ---HHhcCCCCCcEEECCCC
Confidence               11245677777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=2.2e-14  Score=120.17  Aligned_cols=207  Identities=14%  Similarity=0.054  Sum_probs=137.5

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      ++|++|+++++ +++.+.  ...++.+++|++|+++++..++.+. +..+..+++|++|++++|..+..++.        
T Consensus        31 ~~l~~L~l~~n-~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~--------   98 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIP--SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP--------   98 (239)
T ss_dssp             TTCCEEEEESC-CCSEEC--TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT--------
T ss_pred             CcccEEEEeCC-cceEEC--HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH--------
Confidence            47999999996 477652  2346789999999999986677762 34567899999999999777877662        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCcc-EEEeeeee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLE-VLEISEIN  166 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~  166 (311)
                      ..+..+++|++|+++++ .++.++.  .. .. ...+  .+..+.+....  .+..-+  ...+..+++|+ +|++++|+
T Consensus        99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~-~l-~~L~--~L~~L~l~~N~--~l~~i~--~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNT-GLKMFPD--LT-KV-YSTD--IFFILEITDNP--YMTSIP--VNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             TSEECCTTCCEEEEEEE-CCCSCCC--CT-TC-CBCC--SEEEEEEESCT--TCCEEC--TTTTTTTBSSEEEEECCSCC
T ss_pred             HHhCCCCCCCEEeCCCC-CCccccc--cc-cc-cccc--cccEEECCCCc--chhhcC--cccccchhcceeEEEcCCCC
Confidence            24567899999999887 3554442  00 00 0000  00112221110  111100  11234578999 99999998


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhcc-CCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSL-KQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      ++.+      |......++|+.|+++++..++.+ +...+..+ ++|++|++++++ ++.++..    .      +++|+
T Consensus       168 l~~i------~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~----~------~~~L~  229 (239)
T 2xwt_C          168 FTSV------QGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSK----G------LEHLK  229 (239)
T ss_dssp             CCEE------CTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCT----T------CTTCS
T ss_pred             Cccc------CHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChh----H------hccCc
Confidence            8877      333223379999999997667777 44457788 999999999987 7766431    1      89999


Q ss_pred             eEecccCccc
Q 021510          246 TLKLQDLPKL  255 (311)
Q Consensus       246 ~L~l~~c~~L  255 (311)
                      .|.+.+++.|
T Consensus       230 ~L~l~~~~~l  239 (239)
T 2xwt_C          230 ELIARNTWTL  239 (239)
T ss_dssp             EEECTTC---
T ss_pred             eeeccCccCC
Confidence            9999987654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.56  E-value=7.6e-14  Score=123.65  Aligned_cols=228  Identities=16%  Similarity=0.078  Sum_probs=156.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      +-.+++++|+|++. +++.+..  ..++.+++|++|+++++...+.+ +...+.++++++++.+.++..+..++.     
T Consensus        27 ~l~~~l~~L~Ls~N-~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~-----   97 (350)
T 4ay9_X           27 DLPRNAIELRFVLT-KLRVIQK--GAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINP-----   97 (350)
T ss_dssp             TCCTTCSEEEEESC-CCSEECT--TSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECT-----
T ss_pred             CcCCCCCEEEccCC-cCCCcCH--HHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCc-----
Confidence            34568999999995 5777532  24678999999999998655544 334567788888888877788887763     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccC-CCccEEEee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVAL-PNLEVLEIS  163 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~  163 (311)
                         ..+..+++|++|+++++ .++.++.......       ..+..+.+.....  +..-.  ...+..+ ..++.|+++
T Consensus        98 ---~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~-------~~l~~l~l~~~~~--i~~l~--~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           98 ---EAFQNLPNLQYLLISNT-GIKHLPDVHKIHS-------LQKVLLDIQDNIN--IHTIE--RNSFVGLSFESVILWLN  162 (350)
T ss_dssp             ---TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCB-------SSCEEEEEESCTT--CCEEC--TTSSTTSBSSCEEEECC
T ss_pred             ---hhhhhcccccccccccc-ccccCCchhhccc-------chhhhhhhccccc--ccccc--ccchhhcchhhhhhccc
Confidence               23567899999999886 4554443211110       0111111111000  00000  0011122 468899999


Q ss_pred             eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCc
Q 021510          164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQ  243 (311)
Q Consensus       164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  243 (311)
                      +|+++.+      +.......+|+.+.+.+++.++.+ +...+..+++|++|+++++. ++.++.  ..        +.+
T Consensus       163 ~N~i~~i------~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~--------~~~  224 (350)
T 4ay9_X          163 KNGIQEI------HNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPS--YG--------LEN  224 (350)
T ss_dssp             SSCCCEE------CTTSSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSC-CCCCCS--SS--------CTT
T ss_pred             cccccCC------ChhhccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCC-cCccCh--hh--------hcc
Confidence            9999988      445556678999999988899988 65667899999999999996 887743  21        889


Q ss_pred             cCeEecccCcccccccCCCcccCCCcccEEEEec
Q 021510          244 LTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG  277 (311)
Q Consensus       244 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~  277 (311)
                      |++|.+.++..++.++.-   ..+++|+.+++.+
T Consensus       225 L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~  255 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLPTL---EKLVALMEASLTY  255 (350)
T ss_dssp             CCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred             chHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence            999999999999999852   4789999999865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.56  E-value=3.9e-14  Score=127.27  Aligned_cols=91  Identities=15%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+.  +..++.+++|++|+++++ .++.+ +...+..+++|++|+++++. +..++.     
T Consensus        90 ~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~-----  158 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNA-IRYLP--PHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN-LERIED-----  158 (390)
T ss_dssp             TTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCT-----
T ss_pred             cCCCCcCEEECCCCC-CCcCC--HHHhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCc-cCccCh-----
Confidence            467899999999864 65542  234678899999999986 55554 23345789999999999864 333331     


Q ss_pred             ccccceeeecccceEecCCCCCcccc
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                         ..+..+++|++|+++++ .++.+
T Consensus       159 ---~~~~~l~~L~~L~l~~n-~l~~~  180 (390)
T 3o6n_A          159 ---DTFQATTSLQNLQLSSN-RLTHV  180 (390)
T ss_dssp             ---TTTSSCTTCCEEECCSS-CCSBC
T ss_pred             ---hhccCCCCCCEEECCCC-cCCcc
Confidence               12456788888888776 34433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=7.2e-14  Score=132.56  Aligned_cols=257  Identities=16%  Similarity=0.140  Sum_probs=160.5

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +|++|++.++ .++.+.  ...++.+++|++|+++++ .++.+  +..+..+++|++|+++++. +..+++        .
T Consensus       255 ~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~l--p~~l~~l~~L~~L~l~~n~-l~~~~~--------~  319 (606)
T 3t6q_A          255 SVESINLQKH-YFFNIS--SNTFHCFSGLQELDLTAT-HLSEL--PSGLVGLSTLKKLVLSANK-FENLCQ--------I  319 (606)
T ss_dssp             EEEEEECTTC-CCSSCC--TTTTTTCTTCSEEECTTS-CCSCC--CSSCCSCTTCCEEECTTCC-CSBGGG--------G
T ss_pred             ceeEEEeecC-ccCccC--HHHhccccCCCEEeccCC-ccCCC--ChhhcccccCCEEECccCC-cCcCch--------h
Confidence            6778888875 355532  233677889999999886 45555  4556788899999998864 333321        1


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                      .+..+++|++|+++++.....++.....       ....+..+.+..   ..+.........+..+++|++|++++|++.
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------~l~~L~~L~l~~---n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLE-------NLENLRELDLSH---DDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTT-------TCTTCCEEECCS---SCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhh-------ccCcCCEEECCC---CccccccCcchhcccCCCCCEEECCCCcCC
Confidence            3456788888888887433333322111       111112222221   111111111123456899999999999877


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK  248 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  248 (311)
                      .+     .|..+..+++|++|+++++.. ....+...+..+++|++|++++|. +..... ..      +..+++|++|+
T Consensus       390 ~~-----~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~~~l~~L~~L~  455 (606)
T 3t6q_A          390 SL-----KTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QL------FDGLPALQHLN  455 (606)
T ss_dssp             EE-----CTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TT------TTTCTTCCEEE
T ss_pred             cC-----CHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCEEECCCCc-cCCcCH-HH------HhCCCCCCEEE
Confidence            76     245677889999999998643 333233346788999999999997 544321 11      12289999999


Q ss_pred             cccCccccc-ccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          249 LQDLPKLRC-LYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       249 l~~c~~L~~-l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      +++++--.. ++.......+++|++|++++|.--...|..+........+.++.+++
T Consensus       456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            999754321 22222225789999999999854445566666666777777777664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.6e-14  Score=125.11  Aligned_cols=250  Identities=12%  Similarity=0.043  Sum_probs=146.8

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      .....+.++ .+++.++.     +-.++|++|+++++ .++.+ ++..+..+++|++|+++++ .+..+..        .
T Consensus        32 ~~~~c~~~~-~~l~~iP~-----~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~   94 (353)
T 2z80_A           32 RNGICKGSS-GSLNSIPS-----GLTEAVKSLDLSNN-RITYI-SNSDLQRCVNLQALVLTSN-GINTIEE--------D   94 (353)
T ss_dssp             TTSEEECCS-TTCSSCCT-----TCCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCEECT--------T
T ss_pred             CCeEeeCCC-CCcccccc-----cccccCcEEECCCC-cCccc-CHHHhccCCCCCEEECCCC-ccCccCH--------h
Confidence            334455554 23555422     33479999999996 46665 2346788999999999997 4555432        1


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-ec
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NV  167 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l  167 (311)
                      .+..+++|++|+++++ .++.++.....       ....+..+.+..   ..+.. .+....+..+++|++|++++| .+
T Consensus        95 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-------~l~~L~~L~L~~---n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYN-YLSNLSSSWFK-------PLSSLTFLNLLG---NPYKT-LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             TTTTCTTCCEEECCSS-CCSSCCHHHHT-------TCTTCSEEECTT---CCCSS-SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             hcCCCCCCCEEECCCC-cCCcCCHhHhC-------CCccCCEEECCC---CCCcc-cCchhhhccCCCCcEEECCCCccc
Confidence            3457899999999987 45554432110       001111222221   11110 000012345788888888888 56


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      ..+     .+..+..+++|++|+++++. +....+. .+..+++|++|+++++. ++.+...  .     ...+++|+.|
T Consensus       163 ~~~-----~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~--~-----~~~~~~L~~L  227 (353)
T 2z80_A          163 TKI-----QRKDFAGLTFLEELEIDASD-LQSYEPK-SLKSIQNVSHLILHMKQ-HILLLEI--F-----VDVTSSVECL  227 (353)
T ss_dssp             CEE-----CTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCSEEEEEEEECSC-STTHHHH--H-----HHHTTTEEEE
T ss_pred             ccc-----CHHHccCCCCCCEEECCCCC-cCccCHH-HHhccccCCeecCCCCc-cccchhh--h-----hhhcccccEE
Confidence            665     13456778888888888864 4444233 36778888888888876 5443211  0     1126788888


Q ss_pred             ecccCcccccccCCC------------------------------cccCCCcccEEEEecCCCcccccccc-ccCCCCCc
Q 021510          248 KLQDLPKLRCLYPGM------------------------------HSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQ  296 (311)
Q Consensus       248 ~l~~c~~L~~l~~~~------------------------------~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~  296 (311)
                      +++++. ++..+...                              ....+++|++|++++| +++.+|.+. ........
T Consensus       228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             ECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence            887753 33322110                              0125678889999887 566777664 45555666


Q ss_pred             cccccccc
Q 021510          297 LGIPAQQL  304 (311)
Q Consensus       297 ~~~~~~~~  304 (311)
                      +.+..+.+
T Consensus       306 L~L~~N~~  313 (353)
T 2z80_A          306 IWLHTNPW  313 (353)
T ss_dssp             EECCSSCB
T ss_pred             EEeeCCCc
Confidence            66666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=1.2e-13  Score=119.26  Aligned_cols=200  Identities=17%  Similarity=0.160  Sum_probs=147.5

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++++++++.+. +++.++.     +-.+++++|+++++. ++.+. +..+..+++|++|+++++ .+..++.     
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~-----~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-----   72 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPP-----DLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRA-ELTKLQV-----   72 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCS-----CCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTS-CCCEEEC-----
T ss_pred             cccCCccEEECCCC-CCCcCCC-----CCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCC-ccCcccC-----
Confidence            46788999999884 5776532     234799999999964 55542 456788999999999996 4555542     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                           ...+++|++|+++++ .++.++..                                     +..+++|++|++++
T Consensus        73 -----~~~l~~L~~L~Ls~N-~l~~l~~~-------------------------------------~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           73 -----DGTLPVLGTLDLSHN-QLQSLPLL-------------------------------------GQTLPALTVLDVSF  109 (290)
T ss_dssp             -----CSCCTTCCEEECCSS-CCSSCCCC-------------------------------------TTTCTTCCEEECCS
T ss_pred             -----CCCCCcCCEEECCCC-cCCcCchh-------------------------------------hccCCCCCEEECCC
Confidence                 246899999999987 45544321                                     13378999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++.+     .+..+..+++|++|+++++ .++.+ +...+..+++|+.|+++++. ++.++.  +.     +..+++|
T Consensus       110 N~l~~l-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~--~~-----~~~l~~L  174 (290)
T 1p9a_G          110 NRLTSL-----PLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANNN-LTELPA--GL-----LNGLENL  174 (290)
T ss_dssp             SCCCCC-----CSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CSCCCT--TT-----TTTCTTC
T ss_pred             CcCccc-----CHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCCc-CCccCH--HH-----hcCcCCC
Confidence            988876     1345788899999999995 56666 54557789999999999987 776643  11     1228899


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +.|++++ .+++.++.+.  ...++|+.|++.++|
T Consensus       175 ~~L~L~~-N~l~~ip~~~--~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          175 DTLLLQE-NSLYTIPKGF--FGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECCS-SCCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred             CEEECCC-CcCCccChhh--cccccCCeEEeCCCC
Confidence            9999988 4677887765  457789999998755

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.55  E-value=2.7e-14  Score=124.03  Aligned_cols=211  Identities=17%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+...+.....+++|++|+++++ .+..+  +..+..+++|++|+++++. +..++.     
T Consensus        49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~-----  118 (306)
T 2z66_A           49 DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM--SSNFLGLEQLEHLDFQHSN-LKQMSE-----  118 (306)
T ss_dssp             TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEE--EEEEETCTTCCEEECTTSE-EESSTT-----
T ss_pred             hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccC--hhhcCCCCCCCEEECCCCc-cccccc-----
Confidence            467899999999864 5443211234456899999999997 45544  4457789999999999863 333321     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                        ...+..+++|++|+++++. ++........       ....+..+.+..   ..+.. ......+..+++|++|++++
T Consensus       119 --~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~---n~l~~-~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          119 --FSVFLSLRNLIYLDISHTH-TRVAFNGIFN-------GLSSLEVLKMAG---NSFQE-NFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             --TTTTTTCTTCCEEECTTSC-CEECSTTTTT-------TCTTCCEEECTT---CEEGG-GEECSCCTTCTTCCEEECTT
T ss_pred             --chhhhhccCCCEEECCCCc-CCccchhhcc-------cCcCCCEEECCC---Ccccc-ccchhHHhhCcCCCEEECCC
Confidence              0134567899999998873 4333221111       111122222222   11111 00112345589999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccC-Cc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVF-PQ  243 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~  243 (311)
                      |+++.+     .|..+..+++|+.|+++++ .+..+.+. .+..+++|++|++++|. +...... ..      ..+ ++
T Consensus       185 n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~-~~------~~~~~~  249 (306)
T 2z66_A          185 CQLEQL-----SPTAFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQ-EL------QHFPSS  249 (306)
T ss_dssp             SCCCEE-----CTTTTTTCTTCCEEECTTS-CCSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSS-SC------CCCCTT
T ss_pred             CCcCCc-----CHHHhcCCCCCCEEECCCC-ccCccChh-hccCcccCCEeECCCCC-CcccCHH-HH------Hhhhcc
Confidence            988877     2456788999999999996 45555333 37789999999999997 6554321 11      115 48


Q ss_pred             cCeEecccCcc
Q 021510          244 LTTLKLQDLPK  254 (311)
Q Consensus       244 L~~L~l~~c~~  254 (311)
                      |+.|++++++-
T Consensus       250 L~~L~L~~N~~  260 (306)
T 2z66_A          250 LAFLNLTQNDF  260 (306)
T ss_dssp             CCEEECTTCCE
T ss_pred             CCEEEccCCCe
Confidence            99999998653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.54  E-value=2.6e-14  Score=124.45  Aligned_cols=191  Identities=16%  Similarity=0.271  Sum_probs=135.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|++.++ +++.+    +.++.+++|++|++++| .+..+  +. +..+++|++|+++++. +..++      
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l----~~~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~------  101 (308)
T 1h6u_A           38 ADLDGITTLSAFGT-GVTTI----EGVQYLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGNP-LKNVS------  101 (308)
T ss_dssp             HHHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSCC-CSCCG------
T ss_pred             HHcCCcCEEEeeCC-CccCc----hhhhccCCCCEEEccCC-cCCCC--hh-HccCCCCCEEEccCCc-CCCch------
Confidence            35788999999986 46553    35678999999999987 56665  22 7889999999999875 44443      


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                          .+..+++|++|+++++ .++.++.                                      +..+++|++|++++
T Consensus       102 ----~~~~l~~L~~L~l~~n-~l~~~~~--------------------------------------l~~l~~L~~L~l~~  138 (308)
T 1h6u_A          102 ----AIAGLQSIKTLDLTST-QITDVTP--------------------------------------LAGLSNLQVLYLDL  138 (308)
T ss_dssp             ----GGTTCTTCCEEECTTS-CCCCCGG--------------------------------------GTTCTTCCEEECCS
T ss_pred             ----hhcCCCCCCEEECCCC-CCCCchh--------------------------------------hcCCCCCCEEECCC
Confidence                3456789999999887 3444321                                      23378888888888


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |.++.+      + .+..+++|+.|+++++ .+..+ +.  +..+++|++|++++|. ++.+..         +..+++|
T Consensus       139 n~l~~~------~-~l~~l~~L~~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~---------l~~l~~L  197 (308)
T 1h6u_A          139 NQITNI------S-PLAGLTNLQYLSIGNA-QVSDL-TP--LANLSKLTTLKADDNK-ISDISP---------LASLPNL  197 (308)
T ss_dssp             SCCCCC------G-GGGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCGG---------GGGCTTC
T ss_pred             CccCcC------c-cccCCCCccEEEccCC-cCCCC-hh--hcCCCCCCEEECCCCc-cCcChh---------hcCCCCC
Confidence            877765      1 2567788888888886 45544 22  6778888888888886 665532         1228888


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +.|+++++ .++.++. .  ..+++|++|++.+++
T Consensus       198 ~~L~L~~N-~l~~~~~-l--~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          198 IEVHLKNN-QISDVSP-L--ANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CEEECTTS-CCCBCGG-G--TTCTTCCEEEEEEEE
T ss_pred             CEEEccCC-ccCcccc-c--cCCCCCCEEEccCCe
Confidence            88888885 4555542 2  467888888888865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=2.7e-13  Score=128.56  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|++|+++++. ++.+.  +..++.+++|++|+++++. +..+ ++..++.+++|++|++++| .+..++.      
T Consensus        73 ~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~------  140 (597)
T 3oja_B           73 SFRQVELLNLNDLQ-IEEID--TYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVLVLERN-DLSSLPR------  140 (597)
T ss_dssp             HCCCCSEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred             cCCCCcEEECCCCC-CCCCC--hHHhcCCCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEEEeeCC-CCCCCCH------
Confidence            46788999998864 55532  2356788888888888864 5554 2345677888888888886 3444442      


Q ss_pred             cccceeeecccceEecCCC
Q 021510           86 NAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~  104 (311)
                        ..+..+++|++|+++++
T Consensus       141 --~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B          141 --GIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             --TTTTTCTTCCEEECCSS
T ss_pred             --HHhccCCCCCEEEeeCC
Confidence              11245677777777766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=2.6e-13  Score=116.57  Aligned_cols=223  Identities=14%  Similarity=0.134  Sum_probs=153.8

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      ++++..+ .+++.++     .+..++|++|+++++ .++.+. +..+..+++|++|+++++ .+..+..        ..+
T Consensus        14 ~~~~c~~-~~l~~ip-----~~~~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~--------~~~   76 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVP-----VGIPAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSN-VLARIDA--------AAF   76 (285)
T ss_dssp             CEEECCS-SCCSSCC-----TTCCTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECT--------TTT
T ss_pred             eEEEcCc-CCcccCC-----cCCCCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCC-ccceeCH--------hhc
Confidence            3455555 3455542     244589999999986 566552 345788999999999986 4544432        234


Q ss_pred             eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510           91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI  170 (311)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i  170 (311)
                      ..+++|++|+++++..++.+...                                    .+..+++|++|++++|+++.+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~------------------------------------~~~~l~~L~~L~l~~n~l~~~  120 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPA------------------------------------TFHGLGRLHTLHLDRCGLQEL  120 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTT------------------------------------TTTTCTTCCEEECTTSCCCCC
T ss_pred             CCccCCCEEeCCCCCCccccCHH------------------------------------HhcCCcCCCEEECCCCcCCEE
Confidence            56899999999998656654321                                    123479999999999987765


Q ss_pred             eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecc
Q 021510          171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQ  250 (311)
Q Consensus       171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  250 (311)
                           .|..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+... .      +..+++|+.|+++
T Consensus       121 -----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~------~~~l~~L~~L~l~  185 (285)
T 1ozn_A          121 -----GPGLFRGLAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPER-A------FRGLHSLDRLLLH  185 (285)
T ss_dssp             -----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTT-T------TTTCTTCCEEECC
T ss_pred             -----CHhHhhCCcCCCEEECCCC-ccccc-CHhHhccCCCccEEECCCCc-ccccCHH-H------hcCccccCEEECC
Confidence                 2445778999999999996 55555 44447789999999999996 7766431 1      1228999999999


Q ss_pred             cCcccccccCCCcccCCCcccEEEEecCCCccccccc-cccCCCCCccccccccc
Q 021510          251 DLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD-LSQNNENDQLGIPAQQL  304 (311)
Q Consensus       251 ~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~~~~~~~~~~~~~~~  304 (311)
                      ++. ++.+.... ...+++|++|+++++ ++..++.+ +........+.+..+.+
T Consensus       186 ~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          186 QNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             SSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CCc-ccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            964 55553322 146899999999997 45555533 44455566666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.53  E-value=3.8e-14  Score=121.17  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=15.8

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC   71 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c   71 (311)
                      ..+++|+.|++.++. ++.+   ..+..+++|++|+++++
T Consensus        38 ~~l~~L~~L~l~~~~-i~~~---~~l~~l~~L~~L~l~~n   73 (272)
T 3rfs_A           38 NELNSIDQIIANNSD-IKSV---QGIQYLPNVRYLALGGN   73 (272)
T ss_dssp             HHHTTCCEEECTTSC-CCCC---TTGGGCTTCCEEECTTS
T ss_pred             ccccceeeeeeCCCC-cccc---cccccCCCCcEEECCCC
Confidence            344455555554432 2222   22344455555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.52  E-value=3e-13  Score=115.37  Aligned_cols=201  Identities=16%  Similarity=0.175  Sum_probs=135.6

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .+.+.+++++. +++.++.     .-.+++++|+++++ .++.+ ++..+..+++|++|+++++. +..++.        
T Consensus        16 ~~~~~l~~~~~-~l~~ip~-----~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~i~~--------   78 (270)
T 2o6q_A           16 NNKNSVDCSSK-KLTAIPS-----NIPADTKKLDLQSN-KLSSL-PSKAFHRLTKLRLLYLNDNK-LQTLPA--------   78 (270)
T ss_dssp             TTTTEEECTTS-CCSSCCS-----CCCTTCSEEECCSS-CCSCC-CTTSSSSCTTCCEEECCSSC-CSCCCT--------
T ss_pred             CCCCEEEccCC-CCCccCC-----CCCCCCCEEECcCC-CCCee-CHHHhcCCCCCCEEECCCCc-cCeeCh--------
Confidence            35677888774 4666422     22368999999886 45554 23457788999999998853 444432        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV  167 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  167 (311)
                      ..+..+++|++|+++++ .++.++..                                    .+..+++|++|++++|++
T Consensus        79 ~~~~~l~~L~~L~l~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~l~~n~l  121 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDN-KLQALPIG------------------------------------VFDQLVNLAELRLDRNQL  121 (270)
T ss_dssp             TTTSSCTTCCEEECCSS-CCCCCCTT------------------------------------TTTTCSSCCEEECCSSCC
T ss_pred             hhhcCCCCCCEEECCCC-cCCcCCHh------------------------------------HcccccCCCEEECCCCcc
Confidence            12346788999999886 34443321                                    112368899999999877


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      +.+     .+..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+...       .+..+++|+.|
T Consensus       122 ~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L  186 (270)
T 2o6q_A          122 KSL-----PPRVFDSLTKLTYLSLGYN-ELQSL-PKGVFDKLTSLKELRLYNNQ-LKRVPEG-------AFDKLTELKTL  186 (270)
T ss_dssp             CCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCEE
T ss_pred             Cee-----CHHHhCcCcCCCEEECCCC-cCCcc-CHhHccCCcccceeEecCCc-CcEeChh-------HhccCCCcCEE
Confidence            766     1334678889999999885 55555 44446778899999999886 6655321       11227889999


Q ss_pred             ecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          248 KLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +++++ .++.++.... ..+++|+.|++.++|
T Consensus       187 ~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          187 KLDNN-QLKRVPEGAF-DSLEKLKMLQLQENP  216 (270)
T ss_dssp             ECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             ECCCC-cCCcCCHHHh-ccccCCCEEEecCCC
Confidence            99886 6667665432 367889999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=4.4e-15  Score=130.61  Aligned_cols=210  Identities=14%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      ++++.|++.+.. +.+.   .+....+++|++|++++|. +.....+..+..+++|++|++++|......+         
T Consensus        70 ~~l~~L~l~~n~-l~~~---~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---------  135 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQP---LAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV---------  135 (336)
T ss_dssp             TTCSEEECTTCE-ECSC---CCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHH---------
T ss_pred             ccceEEEcCCcc-cccc---chhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHH---------
Confidence            566777776643 3332   2334567888888888874 4432124566778888888888874222221         


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-e
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-N  166 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~  166 (311)
                      ..+..+++|++|++++|..+++....                                   .....+++|++|++++| .
T Consensus       136 ~~l~~~~~L~~L~L~~~~~l~~~~l~-----------------------------------~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          136 NTLAKNSNLVRLNLSGCSGFSEFALQ-----------------------------------TLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             HHHTTCTTCSEEECTTCBSCCHHHHH-----------------------------------HHHHHCTTCCEEECCCCTT
T ss_pred             HHHhcCCCCCEEECCCCCCCCHHHHH-----------------------------------HHHhcCCCCCEEcCCCCCC
Confidence            12345788888888887655531110                                   00122566666666666 5


Q ss_pred             ceeeeccCCCCCCCCCCC-cccEEEEecCC-CCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          167 VDQIWHYNHLPVTFPRFQ-NLTRLIVWHCH-KLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~-~L~~L~i~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      ++....    +..+..++ +|++|++++|. .+++......+..+++|++|++++|..++..... .      +..+++|
T Consensus       181 l~~~~~----~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------l~~l~~L  249 (336)
T 2ast_B          181 FTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E------FFQLNYL  249 (336)
T ss_dssp             CCHHHH----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-G------GGGCTTC
T ss_pred             cChHHH----HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-H------HhCCCCC
Confidence            543100    12233455 66666666664 3331111123455666666666666533321111 1      1115666


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGC  278 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c  278 (311)
                      ++|++++|..+....... ...+++|++|++.+|
T Consensus       250 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             CEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence            666666665433221111 124666666666666

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=5.9e-13  Score=116.93  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=78.8

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|++|++++|.++.+     .+..+..+++|+.|+++++ .+... +...+..+++|++|++++|. ++.++.  ..  
T Consensus       193 ~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp~--~l--  260 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHN-QIRMI-ENGSLSFLPTLRELHLDNNK-LSRVPA--GL--  260 (332)
T ss_dssp             SSCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSS-CCCCC-CTTGGGGCTTCCEEECCSSC-CCBCCT--TG--
T ss_pred             CCCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCC-cCCcC-ChhHhhCCCCCCEEECCCCc-CeecCh--hh--
Confidence            5777777777766654     1345677788888888885 45545 33336778888888888886 665532  12  


Q ss_pred             cCCcccCCccCeEecccCcccccccCCCccc-----CCCcccEEEEecCCCc--cccccccccCCCCCccccc
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSS-----EWPALEILLVYGCDKL--KIFAADLSQNNENDQLGIP  300 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~-----~~~~L~~L~i~~c~~l--~~lp~~~~~~~~~~~~~~~  300 (311)
                          ..+++|+.|+++++ .++.++......     ..++|+.|++.++|-.  ...|..+........+.++
T Consensus       261 ----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          261 ----PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             ----GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             ----hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence                22788888888874 566665433211     2466888888888744  2333333333334444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.51  E-value=2.9e-13  Score=123.90  Aligned_cols=113  Identities=19%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccc
Q 021510          179 TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL  258 (311)
Q Consensus       179 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  258 (311)
                      .+..+++|++|+++++ .+....+. .+..+++|++|++++|. ++.+... .      +..+++|+.|+++++ +++.+
T Consensus       294 ~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~------~~~l~~L~~L~Ls~N-~l~~~  362 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQNF-LGSIDSR-M------FENLDKLEVLDLSYN-HIRAL  362 (455)
T ss_dssp             TTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCEECGG-G------GTTCTTCCEEECCSS-CCCEE
T ss_pred             hcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCCc-cCCcChh-H------hcCcccCCEEECCCC-ccccc
Confidence            3455566666666654 33333222 24556666666666664 4444211 1      112677777777765 34444


Q ss_pred             cCCCcccCCCcccEEEEecCCCcccccccc-ccCCCCCccccccccc
Q 021510          259 YPGMHSSEWPALEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQL  304 (311)
Q Consensus       259 ~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~~  304 (311)
                      .... ...+++|++|+++++ +++.+|.+. ........+.+..+.+
T Consensus       363 ~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          363 GDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             Chhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence            3222 135677777777775 455555432 3344555566655543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.50  E-value=2.8e-13  Score=124.60  Aligned_cols=103  Identities=21%  Similarity=0.231  Sum_probs=52.1

Q ss_pred             CCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccC
Q 021510          181 PRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYP  260 (311)
Q Consensus       181 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~  260 (311)
                      +.+++|+.|+++++ .+..+ +  .+..+++|++|++++|. +..+..         +..+++|+.|+++++ .++.++.
T Consensus       218 ~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~~  282 (466)
T 1o6v_A          218 GILTNLDELSLNGN-QLKDI-G--TLASLTNLTDLDLANNQ-ISNLAP---------LSGLTKLTELKLGAN-QISNISP  282 (466)
T ss_dssp             GGCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSSC-CCCCGG---------GTTCTTCSEEECCSS-CCCCCGG
T ss_pred             cccCCCCEEECCCC-Ccccc-h--hhhcCCCCCEEECCCCc-cccchh---------hhcCCCCCEEECCCC-ccCcccc
Confidence            34455555555554 23322 1  24455566666666654 333321         122667777777764 3333332


Q ss_pred             CCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          261 GMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       261 ~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                         ...+++|++|++.+|. ++.++. +........+.+..++
T Consensus       283 ---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          283 ---LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             ---GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred             ---ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc
Confidence               1357778888887764 333332 3334444455554444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.50  E-value=1.7e-13  Score=125.81  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCS   72 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~   72 (311)
                      ...+++|++|+++++. ++++     +++.+++|++|+++++ .++.+  +  ++.+++|++|+++++.
T Consensus        81 ~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNK-LTNL-----DVTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             CTTCTTCSEEECCSSC-CSCC-----CCTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSC
T ss_pred             cccCCCCCEEECcCCC-Ccee-----ecCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCc
Confidence            3567888888888864 5553     2577888888888886 45554  1  5677888888887753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=6e-13  Score=130.45  Aligned_cols=135  Identities=16%  Similarity=0.129  Sum_probs=83.7

Q ss_pred             cCCCccEEEeeeeeceeeeccCCC--CCCCCCCCcccEEEEecCCCCccccchHHHh--ccCCCcEEEEccccccceecc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHL--PVTFPRFQNLTRLIVWHCHKLKYIFSASMIR--SLKQLQRLEICSCEDLQEIIS  228 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~--p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~  228 (311)
                      .+++|+.|++++|++..+......  +....++++|+.|++++| .+..+ |.. +.  .+++|+.|++++|. ++.++.
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~-l~~~~l~~L~~L~Ls~N~-L~~lp~  770 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDD-FRATTLPYLSNMDVSYNC-FSSFPT  770 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGG-GSTTTCTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccc-hHH-hhhccCCCcCEEEeCCCC-CCccch
Confidence            467888888888877655221110  001223448889998886 55555 544 43  78889999998886 665422


Q ss_pred             cccccCcCCcccCCccCeEecccCc------ccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccc
Q 021510          229 ENRTDQVIPYFVFPQLTTLKLQDLP------KLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQ  302 (311)
Q Consensus       229 ~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~  302 (311)
                        ...      .+++|+.|++++++      -...++...  ..+++|++|++++|.- ..+|..+.  .....+.++.+
T Consensus       771 --~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          771 --QPL------NSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             --GGG------GCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred             --hhh------cCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence              222      27888888887633      233444333  4678888888888754 77887654  34555666555


Q ss_pred             cc
Q 021510          303 QL  304 (311)
Q Consensus       303 ~~  304 (311)
                      .|
T Consensus       838 ~l  839 (876)
T 4ecn_A          838 PN  839 (876)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=8.3e-14  Score=119.01  Aligned_cols=206  Identities=16%  Similarity=0.185  Sum_probs=145.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|++.++. ++.    ...++.+++|++|+++++. +..+   +.+..+++|++|++++|. +..++.     
T Consensus        38 ~~l~~L~~L~l~~~~-i~~----~~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~-----  102 (272)
T 3rfs_A           38 NELNSIDQIIANNSD-IKS----VQGIQYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGNQ-LQSLPN-----  102 (272)
T ss_dssp             HHHTTCCEEECTTSC-CCC----CTTGGGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTSC-CCCCCT-----
T ss_pred             ccccceeeeeeCCCC-ccc----ccccccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCCc-cCccCh-----
Confidence            456889999999864 555    3456889999999999974 5554   467889999999999974 444432     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                         ..+..+++|++|+++++ .++.++..                                    .+..+++|++|++++
T Consensus       103 ---~~~~~l~~L~~L~L~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A          103 ---GVFDKLTNLKELVLVEN-QLQSLPDG------------------------------------VFDKLTNLTYLNLAH  142 (272)
T ss_dssp             ---TTTTTCTTCCEEECTTS-CCCCCCTT------------------------------------TTTTCTTCCEEECCS
T ss_pred             ---hHhcCCcCCCEEECCCC-cCCccCHH------------------------------------HhccCCCCCEEECCC
Confidence               12356799999999987 45443321                                    123478999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++.+     .+..+..+++|+.|+++++ .++.+ +...+..+++|++|++++|. ++.++.. .      +..+++|
T Consensus       143 n~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l~~L  207 (272)
T 3rfs_A          143 NQLQSL-----PKGVFDKLTNLTELDLSYN-QLQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPDG-V------FDRLTSL  207 (272)
T ss_dssp             SCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-T------TTTCTTC
T ss_pred             CccCcc-----CHHHhccCccCCEEECCCC-CcCcc-CHHHhcCCccCCEEECCCCc-CCccCHH-H------HhCCcCC
Confidence            988765     1234678899999999996 55655 44446789999999999997 6665421 1      1228899


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS  289 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~  289 (311)
                      +.|++++++-.         ..++.|+.+++..+.--..+|..+.
T Consensus       208 ~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          208 QYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            99999887432         2466777777766555555665433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=2.6e-13  Score=128.70  Aligned_cols=92  Identities=15%  Similarity=0.076  Sum_probs=62.4

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ...+++|++|+|+++. ++.+.  +..++.+++|++|++++| .++.+ ++..+..+++|++|++++|. +..+++    
T Consensus        95 ~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~----  164 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNA-IRYLP--PHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN-LERIED----  164 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCT----
T ss_pred             hcCCCCCCEEECCCCc-CCCCC--HHHHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCc-CCCCCh----
Confidence            3567899999999864 66642  234578899999999987 55554 23445788999999999874 333331    


Q ss_pred             cccccceeeecccceEecCCCCCcccc
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                          ..+..+++|++|+++++ .++.+
T Consensus       165 ----~~~~~l~~L~~L~L~~N-~l~~~  186 (597)
T 3oja_B          165 ----DTFQATTSLQNLQLSSN-RLTHV  186 (597)
T ss_dssp             ----TTTTTCTTCCEEECTTS-CCSBC
T ss_pred             ----hhhhcCCcCcEEECcCC-CCCCc
Confidence                12446778888888776 34433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=4.1e-13  Score=126.33  Aligned_cols=227  Identities=17%  Similarity=0.144  Sum_probs=131.4

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +|++|++.++. +..+    + ...+++|++|++.++......   . ...+++|++|+++++.- ......      ..
T Consensus       305 ~L~~L~l~~n~-~~~l----~-~~~l~~L~~L~l~~n~~~~~~---~-~~~~~~L~~L~l~~n~l-~~~~~~------~~  367 (570)
T 2z63_A          305 GWQHLELVNCK-FGQF----P-TLKLKSLKRLTFTSNKGGNAF---S-EVDLPSLEFLDLSRNGL-SFKGCC------SQ  367 (570)
T ss_dssp             CCSEEEEESCB-CSSC----C-BCBCSSCCEEEEESCBSCCBC---C-CCBCTTCCEEECCSSCC-BEEEEE------EH
T ss_pred             CccEEeeccCc-cccc----C-cccccccCEEeCcCCcccccc---c-cccCCCCCEEeCcCCcc-Cccccc------cc
Confidence            78888888864 4442    1 256778888888876543322   1 15677888888877642 221100      01


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                      .+..+++|++|+++++ .+..++.. ..       ....+..+.+..   ....... ....+..+++|++|++++|.+.
T Consensus       368 ~~~~~~~L~~L~l~~n-~l~~~~~~-~~-------~l~~L~~L~l~~---n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFN-GVITMSSN-FL-------GLEQLEHLDFQH---SNLKQMS-EFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             HHHTCSCCCEEECCSC-SEEEEEEE-EE-------TCTTCCEEECTT---SEEESCT-TSCTTTTCTTCCEEECTTSCCE
T ss_pred             cccccCccCEEECCCC-cccccccc-cc-------ccCCCCEEEccC---Ccccccc-chhhhhcCCCCCEEeCcCCccc
Confidence            2335677777777776 33333321 00       000111111111   0010000 0112345788999999988776


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK  248 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  248 (311)
                      .+     .|..+..+++|+.|++.+|.......|. .+..+++|++|++++|. ++.+... ..      ..+++|+.|+
T Consensus       435 ~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~-l~~~~~~-~~------~~l~~L~~L~  500 (570)
T 2z63_A          435 VA-----FNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT-AF------NSLSSLQVLN  500 (570)
T ss_dssp             EC-----CTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-TT------TTCTTCCEEE
T ss_pred             cc-----chhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCc-cccCChh-hh------hcccCCCEEe
Confidence            65     2455678889999999887543222243 36778899999999887 6655321 11      1278899999


Q ss_pred             cccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                      +++| +++.++.... ..+++|++|++.+++--
T Consensus       501 l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          501 MASN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred             CCCC-cCCCCCHHHh-hcccCCcEEEecCCccc
Confidence            9886 5666654331 46788999999886533

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.48  E-value=1.3e-12  Score=114.60  Aligned_cols=228  Identities=11%  Similarity=0.124  Sum_probs=141.6

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+  .+..++.+++|++|+++++ .++.+  +..  ..++|++|+++++. +..++.     
T Consensus        73 ~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n-~l~~l--~~~--~~~~L~~L~l~~n~-l~~~~~-----  138 (330)
T 1xku_A           73 KNLKNLHTLILINNK-ISKI--SPGAFAPLVKLERLYLSKN-QLKEL--PEK--MPKTLQELRVHENE-ITKVRK-----  138 (330)
T ss_dssp             TTCTTCCEEECCSSC-CCCB--CTTTTTTCTTCCEEECCSS-CCSBC--CSS--CCTTCCEEECCSSC-CCBBCH-----
T ss_pred             ccCCCCCEEECCCCc-CCee--CHHHhcCCCCCCEEECCCC-cCCcc--Chh--hcccccEEECCCCc-ccccCH-----
Confidence            467899999999864 5553  1345688999999999986 45554  222  23789999998864 333321     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                         ..+..+++|++|+++++. ++........     ......+..+.+..   ..+..-+     ....++|++|++++
T Consensus       139 ---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~~~l~~L~~L~l~~---n~l~~l~-----~~~~~~L~~L~l~~  201 (330)
T 1xku_A          139 ---SVFNGLNQMIVVELGTNP-LKSSGIENGA-----FQGMKKLSYIRIAD---TNITTIP-----QGLPPSLTELHLDG  201 (330)
T ss_dssp             ---HHHTTCTTCCEEECCSSC-CCGGGBCTTG-----GGGCTTCCEEECCS---SCCCSCC-----SSCCTTCSEEECTT
T ss_pred             ---hHhcCCccccEEECCCCc-CCccCcChhh-----ccCCCCcCEEECCC---CccccCC-----ccccccCCEEECCC
Confidence               123467888888888763 3221110000     00011111122211   1111100     01137899999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++.+     .|..+..+++|++|+++++ .+... +...+..+++|++|++++|. ++.++.  ...      .+++|
T Consensus       202 n~l~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp~--~l~------~l~~L  265 (330)
T 1xku_A          202 NKITKV-----DAASLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNNK-LVKVPG--GLA------DHKYI  265 (330)
T ss_dssp             SCCCEE-----CTGGGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSSC-CSSCCT--TTT------TCSSC
T ss_pred             CcCCcc-----CHHHhcCCCCCCEEECCCC-cCcee-ChhhccCCCCCCEEECCCCc-CccCCh--hhc------cCCCc
Confidence            988776     2345778889999999986 45555 33347789999999999996 665532  222      28899


Q ss_pred             CeEecccCcccccccCCCcc-----cCCCcccEEEEecCCC
Q 021510          245 TTLKLQDLPKLRCLYPGMHS-----SEWPALEILLVYGCDK  280 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~-----~~~~~L~~L~i~~c~~  280 (311)
                      +.|+++++ .++.++...+.     ...++++.|++.+.|-
T Consensus       266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence            99999985 56666544321     1347788999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=5.9e-13  Score=122.12  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ...+++|++|+++++. ++++     +++.+++|++|+++++. ++.+   + ++.+++|++|+++++. +..++     
T Consensus        60 l~~l~~L~~L~Ls~n~-l~~~-----~~~~l~~L~~L~Ls~N~-l~~~---~-~~~l~~L~~L~L~~N~-l~~l~-----  122 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNN-ITTL-----DLSQNTNLTYLACDSNK-LTNL---D-VTPLTKLTYLNCDTNK-LTKLD-----  122 (457)
T ss_dssp             GGGCTTCSEEECCSSC-CSCC-----CCTTCTTCSEEECCSSC-CSCC---C-CTTCTTCCEEECCSSC-CSCCC-----
T ss_pred             hcccCCCCEEEccCCc-CCeE-----ccccCCCCCEEECcCCC-Ccee---e-cCCCCcCCEEECCCCc-CCeec-----
Confidence            3567899999999964 6664     26889999999999974 6665   2 6789999999999873 43332     


Q ss_pred             cccccceeeecccceEecCCC
Q 021510           84 VDNAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~  104 (311)
                            +..+++|++|+++++
T Consensus       123 ------~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          123 ------VSQNPLLTYLNCARN  137 (457)
T ss_dssp             ------CTTCTTCCEEECTTS
T ss_pred             ------CCCCCcCCEEECCCC
Confidence                  234555666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=9.3e-13  Score=121.13  Aligned_cols=102  Identities=21%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT  232 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  232 (311)
                      .+++|++|++++|+++.+       ..+..+++|+.|++++| .+....+   +..+++|++|++++|. ++.+.   . 
T Consensus       285 ~l~~L~~L~L~~n~l~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~-  348 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDI-------SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS---S-  348 (466)
T ss_dssp             TCTTCSEEECCSSCCSCC-------GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG---G-
T ss_pred             CCCccCeEEcCCCcccCc-------hhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch---h-
Confidence            345555555555544443       11345556666666664 2333312   3456666666666664 44331   1 


Q ss_pred             cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                           +..+++|+.|++++|+ +..+.. .  ..+++|++|++.+|+
T Consensus       349 -----l~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          349 -----LANLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA  386 (466)
T ss_dssp             -----GTTCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE
T ss_pred             -----hccCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc
Confidence                 1126666667666653 333322 1  356677777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=7.9e-13  Score=114.04  Aligned_cols=201  Identities=18%  Similarity=0.189  Sum_probs=146.9

Q ss_pred             ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510           31 VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        31 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                      ++.+++++++++.++ .++.+  |..+  .+++++|+++++. +..+..        ..+..+++|++|+++++ .++.+
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~i--p~~~--~~~l~~L~L~~N~-l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTAL--PPDL--PKDTTILHLSENL-LYTFSL--------ATLMPYTRLTQLNLDRA-ELTKL   70 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSC--CSCC--CTTCCEEECTTSC-CSEEEG--------GGGTTCTTCCEEECTTS-CCCEE
T ss_pred             ccccCCccEEECCCC-CCCcC--CCCC--CCCCCEEEcCCCc-CCccCH--------HHhhcCCCCCEEECCCC-ccCcc
Confidence            367889999999874 56665  2222  4789999999965 444432        23457899999999987 45554


Q ss_pred             ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEE
Q 021510          111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLI  190 (311)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~  190 (311)
                      +..                                      ..+++|++|++++|+++.+      |..+..+++|+.|+
T Consensus        71 ~~~--------------------------------------~~l~~L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           71 QVD--------------------------------------GTLPVLGTLDLSHNQLQSL------PLLGQTLPALTVLD  106 (290)
T ss_dssp             ECC--------------------------------------SCCTTCCEEECCSSCCSSC------CCCTTTCTTCCEEE
T ss_pred             cCC--------------------------------------CCCCcCCEEECCCCcCCcC------chhhccCCCCCEEE
Confidence            331                                      2378999999999988865      56678899999999


Q ss_pred             EecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcc
Q 021510          191 VWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPAL  270 (311)
Q Consensus       191 i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L  270 (311)
                      ++++ .++.+ +...+..+++|++|+++++. ++.++..  .     +..+++|+.|+++++ +++.++.+.. ..+++|
T Consensus       107 l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~-----~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L  174 (290)
T 1p9a_G          107 VSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPPG--L-----LTPTPKLEKLSLANN-NLTELPAGLL-NGLENL  174 (290)
T ss_dssp             CCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCTT--T-----TTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTC
T ss_pred             CCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccChh--h-----cccccCCCEEECCCC-cCCccCHHHh-cCcCCC
Confidence            9995 66666 43447889999999999997 7766421  1     122889999999984 6778776542 368999


Q ss_pred             cEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          271 EILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       271 ~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      ++|+++++ +++.+|.+.........+.+.++.
T Consensus       175 ~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          175 DTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            99999886 577888877766666666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.46  E-value=9.4e-13  Score=122.64  Aligned_cols=67  Identities=21%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc-hHHHhccCCCcEEEEccccccce
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS-ASMIRSLKQLQRLEICSCEDLQE  225 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~  225 (311)
                      ..+++|++|++++|+++..     .|..+..+++|++|+++++ .+..+.. ...+..+++|++|++++|. +..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~  388 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDT-----VFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSY  388 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTT-----TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBC
T ss_pred             hhCCcccEEEeECCccChh-----hhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCc
Confidence            3466777777777766542     2456778889999999886 3443211 1236788899999999887 554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.45  E-value=9.7e-13  Score=123.26  Aligned_cols=62  Identities=13%  Similarity=0.068  Sum_probs=35.2

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC   71 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c   71 (311)
                      ..+++|++|+++++. ++++.  +..++.+++|++|+++++ +++.+. +..+..+++|++|+++++
T Consensus        23 ~~~~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           23 GLTAAMKSLDLSFNK-ITYIG--HGDLRACANLQVLILKSS-RINTIE-GDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             CCCTTCCEEECCSSC-CCEEC--SSTTSSCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS
T ss_pred             cCCCCccEEECcCCc-cCccC--hhhhhcCCcccEEECCCC-CcCccC-hhhccccccCCEEECCCC
Confidence            334577777777753 54431  233466667777777665 344431 234556666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=1.6e-12  Score=110.88  Aligned_cols=181  Identities=18%  Similarity=0.189  Sum_probs=129.9

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      .+++++|+++++. ++.+.  ...++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..++.       
T Consensus        36 ~~~l~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~-------  102 (270)
T 2o6q_A           36 PADTKKLDLQSNK-LSSLP--SKAFHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNK-LQALPI-------  102 (270)
T ss_dssp             CTTCSEEECCSSC-CSCCC--TTSSSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCT-------
T ss_pred             CCCCCEEECcCCC-CCeeC--HHHhcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCc-CCcCCH-------
Confidence            4579999999964 66642  235688999999999986 45554 23455789999999999864 444442       


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                       ..+..+++|++|+++++ .++.++..                                    .+..+++|++|++++|+
T Consensus       103 -~~~~~l~~L~~L~l~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          103 -GVFDQLVNLAELRLDRN-QLKSLPPR------------------------------------VFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             -TTTTTCSSCCEEECCSS-CCCCCCTT------------------------------------TTTTCTTCCEEECCSSC
T ss_pred             -hHcccccCCCEEECCCC-ccCeeCHH------------------------------------HhCcCcCCCEEECCCCc
Confidence             12356789999999986 44443321                                    12347999999999998


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      ++.+.     +..+..+++|++|+++++ .+..+ +...+..+++|++|+++++. ++.+...       .+..+++|+.
T Consensus       145 l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~  209 (270)
T 2o6q_A          145 LQSLP-----KGVFDKLTSLKELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNNQ-LKRVPEG-------AFDSLEKLKM  209 (270)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCE
T ss_pred             CCccC-----HhHccCCcccceeEecCC-cCcEe-ChhHhccCCCcCEEECCCCc-CCcCCHH-------HhccccCCCE
Confidence            88761     233678899999999996 55655 44447789999999999996 7765321       1222889999


Q ss_pred             EecccCc
Q 021510          247 LKLQDLP  253 (311)
Q Consensus       247 L~l~~c~  253 (311)
                      |++.+++
T Consensus       210 L~l~~N~  216 (270)
T 2o6q_A          210 LQLQENP  216 (270)
T ss_dssp             EECCSSC
T ss_pred             EEecCCC
Confidence            9998765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.44  E-value=8.7e-13  Score=124.05  Aligned_cols=247  Identities=17%  Similarity=0.224  Sum_probs=141.9

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +++|++|++.++. ++++   +..+..+ +|++|++++|. +..+  +.  ..+++|++|++.++.....++        
T Consensus       281 l~~L~~L~l~~~~-l~~l---~~~~~~~-~L~~L~l~~n~-~~~l--~~--~~l~~L~~L~l~~n~~~~~~~--------  342 (570)
T 2z63_A          281 LTNVSSFSLVSVT-IERV---KDFSYNF-GWQHLELVNCK-FGQF--PT--LKLKSLKRLTFTSNKGGNAFS--------  342 (570)
T ss_dssp             GTTCSEEEEESCE-ECSC---CBCCSCC-CCSEEEEESCB-CSSC--CB--CBCSSCCEEEEESCBSCCBCC--------
T ss_pred             cCcccEEEecCcc-chhh---hhhhccC-CccEEeeccCc-cccc--Cc--ccccccCEEeCcCCccccccc--------
Confidence            4666666666653 4443   2333445 67777777653 3333  11  356677777777654332221        


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                         ...+++|++|+++++ .++..........     ....+..+.+..   ..+..-.   ..+..+++|++|++++|.
T Consensus       343 ---~~~~~~L~~L~l~~n-~l~~~~~~~~~~~-----~~~~L~~L~l~~---n~l~~~~---~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          343 ---EVDLPSLEFLDLSRN-GLSFKGCCSQSDF-----GTTSLKYLDLSF---NGVITMS---SNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             ---CCBCTTCCEEECCSS-CCBEEEEEEHHHH-----TCSCCCEEECCS---CSEEEEE---EEEETCTTCCEEECTTSE
T ss_pred             ---cccCCCCCEEeCcCC-ccCcccccccccc-----ccCccCEEECCC---Ccccccc---ccccccCCCCEEEccCCc
Confidence               146778888888776 3332210000000     000111122211   1111111   113457889999999887


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc-eecccccccCcCCcccCCccC
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ-EIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +.....    +..+..+++|++|++++|. +....+. .+..+++|++|++++|. +. ..+ +...      ..+++|+
T Consensus       408 l~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-p~~~------~~l~~L~  473 (570)
T 2z63_A          408 LKQMSE----FSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNS-FQENFL-PDIF------TELRNLT  473 (570)
T ss_dssp             EESCTT----SCTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCE-EGGGEE-CSCC------TTCTTCC
T ss_pred             cccccc----hhhhhcCCCCCEEeCcCCc-ccccchh-hhhcCCcCcEEECcCCc-Cccccc-hhhh------hcccCCC
Confidence            765411    1346788999999999974 4434243 36789999999999997 43 221 1122      2289999


Q ss_pred             eEecccCcccccc-cCCCcccCCCcccEEEEecCCCcccccc-ccccCCCCCccccccccc
Q 021510          246 TLKLQDLPKLRCL-YPGMHSSEWPALEILLVYGCDKLKIFAA-DLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       246 ~L~l~~c~~L~~l-~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~~~~~~~~~~~~~~~  304 (311)
                      .|++++|. ++.+ +...  ..+++|++|++++| ++..++. .+........+.+..+.+
T Consensus       474 ~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          474 FLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             EEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCc-cccCChhhh--hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999974 5555 3333  46899999999998 5665554 345555667777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.44  E-value=4.2e-12  Score=120.40  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC   71 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c   71 (311)
                      .++|++|+++++ +++.+   + .  .+++|++|++++|. ++.+  +.   .+++|++|+++++
T Consensus        60 ~~~L~~L~L~~N-~l~~l---p-~--~l~~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           60 PAHITTLVIPDN-NLTSL---P-A--LPPELRTLEVSGNQ-LTSL--PV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CTTCSEEEECSC-CCSCC---C-C--CCTTCCEEEECSCC-CSCC--CC---CCTTCCEEEECSC
T ss_pred             CCCCcEEEecCC-CCCCC---C-C--cCCCCCEEEcCCCc-CCcC--CC---CCCCCCEEECcCC
Confidence            367777777775 35553   1 1  45777777777753 5544  22   5677777777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=2.1e-14  Score=126.26  Aligned_cols=217  Identities=20%  Similarity=0.166  Sum_probs=140.9

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccce--eccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKE--IFSIGE   82 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~--~~~~~~   82 (311)
                      ..+++|++|+++++. +.... .+..++.+++|++|++++|. +.... +..+..+++|++|++++|..+..  ++    
T Consensus        90 ~~~~~L~~L~L~~~~-l~~~~-~~~~~~~~~~L~~L~L~~~~-l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~----  161 (336)
T 2ast_B           90 FSPFRVQHMDLSNSV-IEVST-LHGILSQCSKLQNLSLEGLR-LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQ----  161 (336)
T ss_dssp             CCCBCCCEEECTTCE-ECHHH-HHHHHTTBCCCSEEECTTCB-CCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHH----
T ss_pred             ccCCCCCEEEccCCC-cCHHH-HHHHHhhCCCCCEEeCcCcc-cCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHH----
Confidence            457999999999975 44310 12345788999999999984 44322 45667799999999999966553  22    


Q ss_pred             ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCC-CccEEE
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALP-NLEVLE  161 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~  161 (311)
                           ..+..+++|++|++++|..+++...                                   ......++ +|++|+
T Consensus       162 -----~~~~~~~~L~~L~l~~~~~l~~~~~-----------------------------------~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          162 -----TLLSSCSRLDELNLSWCFDFTEKHV-----------------------------------QVAVAHVSETITQLN  201 (336)
T ss_dssp             -----HHHHHCTTCCEEECCCCTTCCHHHH-----------------------------------HHHHHHSCTTCCEEE
T ss_pred             -----HHHhcCCCCCEEcCCCCCCcChHHH-----------------------------------HHHHHhcccCCCEEE
Confidence                 1245689999999999977664211                                   01123368 999999


Q ss_pred             eeee--eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcc
Q 021510          162 ISEI--NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYF  239 (311)
Q Consensus       162 l~~~--~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  239 (311)
                      +++|  .++..    ..+..+..+++|++|++++|..++...+. .+..+++|++|++++|..+.....       ..+.
T Consensus       202 l~~~~~~~~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~  269 (336)
T 2ast_B          202 LSGYRKNLQKS----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELG  269 (336)
T ss_dssp             CCSCGGGSCHH----HHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGG
T ss_pred             eCCCcccCCHH----HHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHh
Confidence            9999  34311    01223456789999999999766654343 367889999999999974432210       1112


Q ss_pred             cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccc-cccc
Q 021510          240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKI-FAAD  287 (311)
Q Consensus       240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~-lp~~  287 (311)
                      .+++|+.|++++|  +   +......-...+..|++ +|.++.. .|..
T Consensus       270 ~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l-~~n~l~~~~~~~  312 (336)
T 2ast_B          270 EIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQI-NCSHFTTIARPT  312 (336)
T ss_dssp             GCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEE-SCCCSCCTTCSS
T ss_pred             cCCCCCEEeccCc--c---CHHHHHHHHhhCcceEE-ecccCccccCCc
Confidence            3899999999998  3   22221111123555556 5566653 4433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=1.1e-11  Score=122.17  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|+.|++++|.+..+     .+..+..+++|+.|++.++ .+....+. .+..+++|++|++++|. ++.+... .   
T Consensus       266 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~---  333 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-----NSRVFETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVLNLSYNL-LGELYSS-N---  333 (844)
T ss_dssp             SCCCEEECTTCCCCEE-----CSCCSSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEEEEESCC-CSCCCSC-S---
T ss_pred             CCccEEECCCCccccc-----ChhhhhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEEECCCCC-CCccCHH-H---
Confidence            6788888888876665     2345677788888888885 44444233 36778888888888876 5544221 1   


Q ss_pred             cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                         +..+++|+.|+++++ .++.++.... ..+++|++|+++++.
T Consensus       334 ---~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          334 ---FYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNA  373 (844)
T ss_dssp             ---CSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCC
T ss_pred             ---hcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCC
Confidence               122777788877775 4555543321 356777777776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=8.1e-12  Score=123.06  Aligned_cols=86  Identities=14%  Similarity=0.018  Sum_probs=64.5

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      -.++|++|+|+++. ++.+.  +..++.+++|++|++++|.....+ ++..+.++++|++|+++++. +..+.+      
T Consensus        22 lp~~l~~LdLs~N~-i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~-l~~~~p------   90 (844)
T 3j0a_A           22 VLNTTERLLLSFNY-IRTVT--ASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSK-IYFLHP------   90 (844)
T ss_dssp             SCTTCCEEEEESCC-CCEEC--SSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCC-CCEECT------
T ss_pred             CCCCcCEEECCCCc-CCccC--hhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCc-CcccCH------
Confidence            45789999999964 66642  345688999999999998665554 24667889999999999874 444321      


Q ss_pred             cccceeeecccceEecCCC
Q 021510           86 NAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~  104 (311)
                        ..+..+++|++|+++++
T Consensus        91 --~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           91 --DAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             --TSSCSCSSCCCEECTTC
T ss_pred             --hHccCCcccCEeeCcCC
Confidence              24567899999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=1.1e-12  Score=114.63  Aligned_cols=219  Identities=15%  Similarity=0.129  Sum_probs=151.9

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      ..+++|++|+++++ +++.+ ++..+..+++|++|+++++. +...+          .+..+++|++|+++++ .++.++
T Consensus        31 ~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~----------~~~~l~~L~~L~Ls~n-~l~~l~   96 (317)
T 3o53_A           31 QSAWNVKELDLSGN-PLSQI-SAADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELL   96 (317)
T ss_dssp             TTGGGCSEEECTTS-CCCCC-CHHHHTTCTTCCEEECTTSC-CEEEE----------EETTCTTCCEEECCSS-EEEEEE
T ss_pred             ccCCCCCEEECcCC-ccCcC-CHHHhhCCCcCCEEECCCCc-CCcch----------hhhhcCCCCEEECcCC-cccccc
Confidence            45679999999997 56654 24577899999999999975 33333          2456899999999987 465554


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV  191 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i  191 (311)
                      ..            ..+..+.+..   ..+..-     ....+++|++|++++|+++.+.     +..+..+++|++|++
T Consensus        97 ~~------------~~L~~L~l~~---n~l~~~-----~~~~~~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           97 VG------------PSIETLHAAN---NNISRV-----SCSRGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDL  151 (317)
T ss_dssp             EC------------TTCCEEECCS---SCCSEE-----EECCCSSCEEEECCSSCCCSGG-----GBCTGGGSSEEEEEC
T ss_pred             CC------------CCcCEEECCC---CccCCc-----CccccCCCCEEECCCCCCCCcc-----chhhhccCCCCEEEC
Confidence            31            0111122211   111110     0123688999999999877652     234567889999999


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCccc
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALE  271 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  271 (311)
                      +++ .+....+..+...+++|++|++++|. ++.+..   ..      .+++|+.|+++++ +++.++...  ..+++|+
T Consensus       152 s~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~  217 (317)
T 3o53_A          152 KLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QV------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVT  217 (317)
T ss_dssp             TTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CC------CCTTCCEEECCSS-CCCEECGGG--GGGTTCS
T ss_pred             CCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc---cc------ccccCCEEECCCC-cCCcchhhh--cccCccc
Confidence            996 55555344444578999999999997 776632   11      2899999999985 667776553  5689999


Q ss_pred             EEEEecCCCccccccccccCCCCCccccccccc
Q 021510          272 ILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       272 ~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      +|++++| +++.+|..+........+.+..+.+
T Consensus       218 ~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          218 WISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             EEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             EEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence            9999997 6778887776666777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.43  E-value=2.7e-12  Score=123.39  Aligned_cols=39  Identities=13%  Similarity=0.067  Sum_probs=25.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCC
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCD   46 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~   46 (311)
                      ..+++|++|+++++. +..+  ....++.+++|++|++++|.
T Consensus       326 ~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          326 QWLKCLEHLNMEDND-IPGI--KSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             TTCTTCCEEECCSCC-BCCC--CTTTTTTCTTCCEEECTTCB
T ss_pred             ccCCCCCEEECCCCc-cCCC--ChhHhccccCCcEEECCCCc
Confidence            456788888888864 4443  12335677788888877653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.42  E-value=1.6e-13  Score=119.56  Aligned_cols=206  Identities=17%  Similarity=0.155  Sum_probs=106.7

Q ss_pred             CCCCccEEEEcCCCCCcccccchh-hhccCcccEEEEccccccceecccccccccccceeee-----cccceEecCCCCC
Q 021510           33 SFNQLKNIEAYNCDKLSNIFWFST-TKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEF-----AQLRSLSLGNLPE  106 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~  106 (311)
                      .+++|++|+++++. ++...+... ...+++|++|+++++. +..++.         .+..+     ++|++|+++++ .
T Consensus        93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~l~~~~~~~L~~L~L~~N-~  160 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDA---------WLAELQQWLKPGLKVLSIAQA-H  160 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSS---------HHHHHHTTCCTTCCEEEEESC-S
T ss_pred             CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhH---------HHHHHHHhhcCCCcEEEeeCC-C
Confidence            46777777777753 333222221 2567777777777753 322221         11222     67777777776 3


Q ss_pred             ccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCC--CCCCCC
Q 021510          107 VTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPV--TFPRFQ  184 (311)
Q Consensus       107 l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~--~~~~l~  184 (311)
                      ++.++.                                    ..+..+++|++|++++|++.+...   .+.  .+..++
T Consensus       161 l~~~~~------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~  201 (312)
T 1wwl_A          161 SLNFSC------------------------------------EQVRVFPALSTLDLSDNPELGERG---LISALCPLKFP  201 (312)
T ss_dssp             CCCCCT------------------------------------TTCCCCSSCCEEECCSCTTCHHHH---HHHHSCTTSCT
T ss_pred             CccchH------------------------------------HHhccCCCCCEEECCCCCcCcchH---HHHHHHhccCC
Confidence            333321                                    111235677777777774332100   011  124566


Q ss_pred             cccEEEEecCCCCcccc--chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCC
Q 021510          185 NLTRLIVWHCHKLKYIF--SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGM  262 (311)
Q Consensus       185 ~L~~L~i~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  262 (311)
                      +|++|+++++ .++.+.  +...+..+++|++|+++++. ++........      ..+++|+.|+++++ +++.++...
T Consensus       202 ~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~~  272 (312)
T 1wwl_A          202 TLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC------DWPSQLNSLNLSFT-GLKQVPKGL  272 (312)
T ss_dssp             TCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC------CCCTTCCEEECTTS-CCSSCCSSC
T ss_pred             CCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh------hhcCCCCEEECCCC-ccChhhhhc
Confidence            7777777775 333211  22334556777777777775 4443211111      11567777777764 455555433


Q ss_pred             cccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          263 HSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       263 ~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                          .++|++|+++++ +++.+|. +........+.+..+.|
T Consensus       273 ----~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          273 ----PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             ----CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             ----cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence                166777777665 4555554 44444455555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=7e-12  Score=117.93  Aligned_cols=67  Identities=18%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc-hHHHhccCCCcEEEEccccccce
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS-ASMIRSLKQLQRLEICSCEDLQE  225 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~  225 (311)
                      ..+++|++|++++|+++..     .|..+..+++|+.|+++++ .++.+.. ...+..+++|++|++++|. ++.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~  417 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-----VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNS  417 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-----TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBS
T ss_pred             cCCCCceEEECCCCccccc-----hhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCC
Confidence            3467788888888766642     2456778888999988885 4554311 1235678888899888887 544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=4.5e-12  Score=108.28  Aligned_cols=203  Identities=18%  Similarity=0.206  Sum_probs=141.7

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCC
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV  114 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  114 (311)
                      ++|++|+++++ .++.+. +..+..+++|++|+++++ .+..++.        ..+..+++|++|+++++ .++.++.  
T Consensus        28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~--   93 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRC-EIQTIED--------GAYQSLSHLSTLILTGN-PIQSLAL--   93 (276)
T ss_dssp             TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTC-CCCEECT--------TTTTTCTTCCEEECTTC-CCCEECT--
T ss_pred             CCccEEECCCC-cccccC-HhHhccccCCcEEECCCC-cCCccCH--------HHccCCcCCCEEECCCC-ccCccCh--
Confidence            67999999986 566652 346778999999999997 4555442        23456899999999987 4444432  


Q ss_pred             CCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecC
Q 021510          115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHC  194 (311)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c  194 (311)
                                                        ..+..+++|++|++++|++..+.     +..+..+++|++|+++++
T Consensus        94 ----------------------------------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           94 ----------------------------------GAFSGLSSLQKLVAVETNLASLE-----NFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             ----------------------------------TTTTTCTTCCEEECTTSCCCCST-----TCCCTTCTTCCEEECCSS
T ss_pred             ----------------------------------hhhcCCccccEEECCCCCccccC-----chhcccCCCCCEEECcCC
Confidence                                              11234799999999999877651     234778999999999996


Q ss_pred             CCCcccc-chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC----eEecccCcccccccCCCcccCCCc
Q 021510          195 HKLKYIF-SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT----TLKLQDLPKLRCLYPGMHSSEWPA  269 (311)
Q Consensus       195 ~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~c~~L~~l~~~~~~~~~~~  269 (311)
                       .+.... +. .+..+++|++|++++|. ++.+....       +..+++|+    +|+++++ .++.++...  ....+
T Consensus       135 -~l~~~~l~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~  201 (276)
T 2z62_A          135 -LIQSFKLPE-YFSNLTNLEHLDLSSNK-IQSIYCTD-------LRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIR  201 (276)
T ss_dssp             -CCCCCCCCG-GGGGCTTCCEEECCSSC-CCEECGGG-------GHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCC
T ss_pred             -ccceecCch-hhccCCCCCEEECCCCC-CCcCCHHH-------hhhhhhccccceeeecCCC-cccccCccc--cCCCc
Confidence             444431 43 37889999999999997 77664211       11145555    7888874 566776554  34558


Q ss_pred             ccEEEEecCCCcccccccc-ccCCCCCccccccccc
Q 021510          270 LEILLVYGCDKLKIFAADL-SQNNENDQLGIPAQQL  304 (311)
Q Consensus       270 L~~L~i~~c~~l~~lp~~~-~~~~~~~~~~~~~~~~  304 (311)
                      |++|+++++. ++.+|.+. ........+.+..+.+
T Consensus       202 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          202 LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             EEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             ccEEECCCCc-eeecCHhHhcccccccEEEccCCcc
Confidence            9999999875 77777653 4455566677766654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.39  E-value=2.1e-12  Score=119.36  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=149.5

Q ss_pred             CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510           33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC  112 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  112 (311)
                      .+++|++|+++++ .+..+ ++..+..+++|++|++++|. +...+          .+..+++|++|+++++ .++.++.
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~   97 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQI-SAADLAPFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV   97 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCC-CGGGGTTCTTCCEEECTTSC-CEEEE----------ECTTCTTCCEEECCSS-EEEEEEE
T ss_pred             cCCCccEEEeeCC-cCCCC-CHHHHhCCCCCCEEEeeCCC-CCCCc----------ccccCCCCCEEEecCC-cCCCCCC
Confidence            4569999999997 56654 34677899999999999975 33333          2456899999999998 5666553


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEe
Q 021510          113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVW  192 (311)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~  192 (311)
                      .            ..+..+.+..   +.+...     ....+++|+.|++++|.++.+.     |..+..+++|+.|+++
T Consensus        98 ~------------~~L~~L~L~~---N~l~~~-----~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           98 G------------PSIETLHAAN---NNISRV-----SCSRGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             C------------TTCCEEECCS---SCCCCE-----EECCCSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECT
T ss_pred             C------------CCcCEEECcC---CcCCCC-----CccccCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECC
Confidence            2            0111122211   111110     0123688999999999777652     3456778899999999


Q ss_pred             cCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccE
Q 021510          193 HCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEI  272 (311)
Q Consensus       193 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~  272 (311)
                      ++ .+....+..+...+++|++|++++|. ++.+..   ..      .+++|+.|+++++ .++.++...  ..+++|+.
T Consensus       153 ~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~------~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~  218 (487)
T 3oja_A          153 LN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QV------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTW  218 (487)
T ss_dssp             TS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CC------CCTTCCEEECCSS-CCCEECGGG--GGGTTCSE
T ss_pred             CC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc---cc------cCCCCCEEECCCC-CCCCCCHhH--cCCCCccE
Confidence            96 55555355544578999999999997 776632   11      2899999999985 567776553  56899999


Q ss_pred             EEEecCCCccccccccccCCCCCccccccccc
Q 021510          273 LLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       273 L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      |++++| ++..+|..+........+.+..+.+
T Consensus       219 L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             EEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence            999986 4666887766666666677766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=3.5e-12  Score=111.97  Aligned_cols=228  Identities=16%  Similarity=0.176  Sum_probs=127.6

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +++.++++++ +++.++.     .-.++|++|+++++. ++.+. +..+..+++|++|+++++. +..+.+        .
T Consensus        34 ~l~~l~~~~~-~l~~ip~-----~~~~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------~   96 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPK-----EISPDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNK-ISKIHE--------K   96 (332)
T ss_dssp             ETTEEECCSS-CCSSCCS-----CCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECG--------G
T ss_pred             cCCEEECCCC-CccccCC-----CCCCCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCc-cCccCH--------h
Confidence            5777777774 3555421     224688888888863 55542 3456778888888888764 444321        1


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                      .+..+++|++|+++++ .++.++....          ..+..+.+...   .+..-+  ...+..+++|++|++++|.++
T Consensus        97 ~~~~l~~L~~L~L~~n-~l~~l~~~~~----------~~L~~L~l~~n---~i~~~~--~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKN-HLVEIPPNLP----------SSLVELRIHDN---RIRKVP--KGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             GSTTCTTCCEEECCSS-CCCSCCSSCC----------TTCCEEECCSS---CCCCCC--SGGGSSCSSCCEEECCSCCCB
T ss_pred             HhhCcCCCCEEECCCC-cCCccCcccc----------ccCCEEECCCC---ccCccC--HhHhCCCccCCEEECCCCccc
Confidence            3456788888888876 4555443221          11111222211   111000  112345899999999999665


Q ss_pred             eeeccCCCCCCCCCC--------------------CcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecc
Q 021510          169 QIWHYNHLPVTFPRF--------------------QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIIS  228 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l--------------------~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  228 (311)
                      ....   .+..+..+                    ++|++|+++++ .+... +...+..+++|++|+++++. ++.+..
T Consensus       161 ~~~~---~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~N~-l~~~~~  234 (332)
T 2ft3_A          161 NSGF---EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAI-ELEDLLRYSKLYRLGLGHNQ-IRMIEN  234 (332)
T ss_dssp             GGGS---CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCC-CTTSSTTCTTCSCCBCCSSC-CCCCCT
T ss_pred             cCCC---CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCc-CCcCCh
Confidence            3211   12222222                    34555555553 33333 22225566777777777765 544421


Q ss_pred             cccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510          229 ENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       229 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                             ..+..+++|+.|+++++ +++.++...  ..+++|++|+++++ +++.++.
T Consensus       235 -------~~~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          235 -------GSLSFLPTLRELHLDNN-KLSRVPAGL--PDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             -------TGGGGCTTCCEEECCSS-CCCBCCTTG--GGCTTCCEEECCSS-CCCBCCT
T ss_pred             -------hHhhCCCCCCEEECCCC-cCeecChhh--hcCccCCEEECCCC-CCCccCh
Confidence                   11223788888888875 566776654  56788888888876 4555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=3.5e-12  Score=110.90  Aligned_cols=169  Identities=17%  Similarity=0.245  Sum_probs=124.7

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++ .++.+    ..++.+++|++|+++++. ++.+   +.+..+++|++|++++|. +..++      
T Consensus        60 ~~l~~L~~L~L~~n-~i~~~----~~~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~------  123 (308)
T 1h6u_A           60 QYLNNLIGLELKDN-QITDL----APLKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQ-ITDVT------  123 (308)
T ss_dssp             GGCTTCCEEECCSS-CCCCC----GGGTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSC-CCCCG------
T ss_pred             hccCCCCEEEccCC-cCCCC----hhHccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCC-CCCch------
Confidence            45789999999997 46664    237899999999999975 6665   457889999999999974 44443      


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                          .+..+++|++|+++++ .++.++.                                      +..+++|++|++++
T Consensus       124 ----~l~~l~~L~~L~l~~n-~l~~~~~--------------------------------------l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          124 ----PLAGLSNLQVLYLDLN-QITNISP--------------------------------------LAGLTNLQYLSIGN  160 (308)
T ss_dssp             ----GGTTCTTCCEEECCSS-CCCCCGG--------------------------------------GGGCTTCCEEECCS
T ss_pred             ----hhcCCCCCCEEECCCC-ccCcCcc--------------------------------------ccCCCCccEEEccC
Confidence                2457899999999987 4443321                                      23478899999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++.+      +. +..+++|+.|+++++ .+..+.+   +..+++|++|++++|. ++.+..         +..+++|
T Consensus       161 n~l~~~------~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~---------l~~l~~L  219 (308)
T 1h6u_A          161 AQVSDL------TP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVSP---------LANTSNL  219 (308)
T ss_dssp             SCCCCC------GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCGG---------GTTCTTC
T ss_pred             CcCCCC------hh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCcccc---------ccCCCCC
Confidence            877765      22 667888999999885 4555522   6778899999999886 665532         1228889


Q ss_pred             CeEecccCc
Q 021510          245 TTLKLQDLP  253 (311)
Q Consensus       245 ~~L~l~~c~  253 (311)
                      +.|++++++
T Consensus       220 ~~L~l~~N~  228 (308)
T 1h6u_A          220 FIVTLTNQT  228 (308)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEccCCe
Confidence            999888754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.38  E-value=2.3e-12  Score=119.97  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=69.2

Q ss_pred             ccCCCccEEEeeeeecee-eeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccc
Q 021510          152 VALPNLEVLEISEINVDQ-IWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISE  229 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~-i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  229 (311)
                      ..+++|++|++++|.++. +      |. .+..+++|+.|+++++.-.... +.. +  .++|++|++++|. ++.++. 
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l------~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-l--~~~L~~L~Ls~N~-l~~ip~-  438 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDE------KKGDCSWTKSLLSLNMSSNILTDTI-FRC-L--PPRIKVLDLHSNK-IKSIPK-  438 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCG------GGCSCCCCTTCCEEECCSSCCCGGG-GGS-C--CTTCCEEECCSSC-CCCCCG-
T ss_pred             hhCCCCCEEECCCCcCCccc------ccchhccCccCCEEECcCCCCCcch-hhh-h--cccCCEEECCCCc-ccccch-
Confidence            457788888888886665 4      22 2456678888888876433322 221 1  1578888888886 665532 


Q ss_pred             ccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCc
Q 021510          230 NRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKL  281 (311)
Q Consensus       230 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l  281 (311)
                       ....      +++|+.|+++++ +++.++... ...+++|++|++.+++--
T Consensus       439 -~~~~------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          439 -QVVK------LEALQELNVASN-QLKSVPDGI-FDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             -GGGG------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCBC
T ss_pred             -hhhc------CCCCCEEECCCC-cCCccCHHH-hccCCcccEEECcCCCCc
Confidence             1112      788888888875 566766542 146778888888887643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=3.5e-11  Score=113.14  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceec
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIF   78 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~   78 (311)
                      ...++|++|+++++. ++++.  +..++.+++|++|+++++ .++.+. +..+..+++|++|+++++. +..++
T Consensus        49 ~~~~~L~~L~Ls~N~-i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp  116 (562)
T 3a79_B           49 DLPPRTKALSLSQNS-ISELR--MPDISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHNR-LQNIS  116 (562)
T ss_dssp             TSCTTCCEEECCSSC-CCCCC--GGGTTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred             CCCCCcCEEECCCCC-ccccC--hhhhccCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCCc-CCccC
Confidence            344678888887753 55531  234567777888888775 455442 3456667777777777753 44444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=1.1e-11  Score=109.69  Aligned_cols=192  Identities=16%  Similarity=0.122  Sum_probs=107.2

Q ss_pred             CCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccC
Q 021510           34 FNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCE  113 (311)
Q Consensus        34 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  113 (311)
                      .+++++|+++++ +++.+ ++..+.++++|++|+++++..++.++.        ..+..+++++++.+.++.+++.++..
T Consensus        29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~--------~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA--------DVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECT--------TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccCh--------hHhhcchhhhhhhcccCCcccccCch
Confidence            478999999985 67776 234578899999999999876665552        12346677777666665567666442


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCC-----------------
Q 021510          114 VETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHL-----------------  176 (311)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~-----------------  176 (311)
                      ..                                    ..+++|++|++++|+++.+......                 
T Consensus        99 ~f------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           99 AF------------------------------------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             SB------------------------------------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             hh------------------------------------hhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence            11                                    2245555555555544433110000                 


Q ss_pred             --C-CCCCCC-CcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510          177 --P-VTFPRF-QNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       177 --p-~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  252 (311)
                        + ..+..+ ..++.|++++ +.++.+ +.. +...++|+++.+.++..++.+..       ..+..+++|+.|+++++
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~-N~i~~i-~~~-~f~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNK-NGIQEI-HNS-AFNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT  212 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCS-SCCCEE-CTT-SSTTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS
T ss_pred             cccccchhhcchhhhhhcccc-ccccCC-Chh-hccccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC
Confidence              1 111222 2344444444 233333 222 12233455555555444544421       11222677777777764


Q ss_pred             cccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510          253 PKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       253 ~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                       ++++++.+.    +..|++|++.++.+++.+|.
T Consensus       213 -~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          213 -RIHSLPSYG----LENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             -CCCCCCSSS----CTTCCEEECTTCTTCCCCCC
T ss_pred             -CcCccChhh----hccchHhhhccCCCcCcCCC
Confidence             567766533    56777777777777777773

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.35  E-value=3.4e-11  Score=115.73  Aligned_cols=38  Identities=24%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      .+++|+.|+++++ +++.++.... ..+++|++|+++++.
T Consensus       478 ~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          478 PLRNLTILDLSNN-NIANINDDML-EGLEKLEILDLQHNN  515 (680)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCC-CCCcCChhhh-ccccccCEEeCCCCC
Confidence            3677888888774 4555554321 367888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.35  E-value=2.2e-12  Score=112.36  Aligned_cols=207  Identities=18%  Similarity=0.121  Sum_probs=113.4

Q ss_pred             cCCcccEEeecccccccccccccccc--cCCCCccEEEEcCCCCCcccccchhhhcc-----CcccEEEEccccccceec
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKV--ESFNQLKNIEAYNCDKLSNIFWFSTTKCL-----PRLERIAVINCSKMKEIF   78 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~~~   78 (311)
                      .+++|++|+++++. +++.  .+..+  +.+++|++|+++++ .++..  +..+..+     ++|++|+++++. +..++
T Consensus        93 ~l~~L~~L~L~~n~-l~~~--~~~~~~~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~  165 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGT--APPPLLEATGPDLNILNLRNV-SWATR--DAWLAELQQWLKPGLKVLSIAQAH-SLNFS  165 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSC--CCCCSSSCCSCCCSEEEEESC-BCSSS--SSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred             CcCCccEEEccCCc-ccch--hHHHHHHhcCCCccEEEccCC-CCcch--hHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence            36777777777754 4431  12222  66777777777775 34444  2444444     777777777754 33332


Q ss_pred             ccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCcc
Q 021510           79 SIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLE  158 (311)
Q Consensus        79 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~  158 (311)
                      .        ..+..+++|++|+++++.-.+..+...                                 ......+++|+
T Consensus       166 ~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------------------~~~~~~l~~L~  204 (312)
T 1wwl_A          166 C--------EQVRVFPALSTLDLSDNPELGERGLIS---------------------------------ALCPLKFPTLQ  204 (312)
T ss_dssp             T--------TTCCCCSSCCEEECCSCTTCHHHHHHH---------------------------------HSCTTSCTTCC
T ss_pred             H--------HHhccCCCCCEEECCCCCcCcchHHHH---------------------------------HHHhccCCCCC
Confidence            1        234567777777777764322211000                                 00002357777


Q ss_pred             EEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCC
Q 021510          159 VLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIP  237 (311)
Q Consensus       159 ~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  237 (311)
                      +|++++|+++.+...   +. .+..+++|++|+++++ .+....+......+++|++|++++|. ++.++.  ..     
T Consensus       205 ~L~L~~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~--~~-----  272 (312)
T 1wwl_A          205 VLALRNAGMETPSGV---CSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK--GL-----  272 (312)
T ss_dssp             EEECTTSCCCCHHHH---HHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS--SC-----
T ss_pred             EEECCCCcCcchHHH---HHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh--hc-----
Confidence            777777766533110   11 1234567777777775 34433222224456777777777776 554421  11     


Q ss_pred             cccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          238 YFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       238 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                         +++|+.|+++++ +++.++. .  ..+++|++|++.+++
T Consensus       273 ---~~~L~~L~Ls~N-~l~~~p~-~--~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          273 ---PAKLSVLDLSYN-RLDRNPS-P--DELPQVGNLSLKGNP  307 (312)
T ss_dssp             ---CSEEEEEECCSS-CCCSCCC-T--TTSCEEEEEECTTCT
T ss_pred             ---cCCceEEECCCC-CCCCChh-H--hhCCCCCEEeccCCC
Confidence               367777777764 5555543 2  456777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=2.6e-12  Score=110.81  Aligned_cols=167  Identities=19%  Similarity=0.276  Sum_probs=88.4

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|++|+++++ .++.+    +.++.+++|++|+++++ .++.+  +. +..+++|++|+++++. +..++       
T Consensus        44 ~l~~L~~L~l~~~-~i~~~----~~~~~l~~L~~L~L~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~-------  106 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSV----QGIQYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENK-VKDLS-------  106 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCCGG-------
T ss_pred             hcCcccEEEccCC-CcccC----hhHhcCCCCCEEEccCC-ccCCC--cc-cccCCCCCEEECCCCc-CCCCh-------
Confidence            4566677777665 34442    33466677777777665 34444  12 5666777777776653 33332       


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                         .+..+++|++|+++++ .++.++                                      .+..+++|+.|++++|
T Consensus       107 ---~l~~l~~L~~L~L~~n-~i~~~~--------------------------------------~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          107 ---SLKDLKKLKSLSLEHN-GISDIN--------------------------------------GLVHLPQLESLYLGNN  144 (291)
T ss_dssp             ---GGTTCTTCCEEECTTS-CCCCCG--------------------------------------GGGGCTTCCEEECCSS
T ss_pred             ---hhccCCCCCEEECCCC-cCCCCh--------------------------------------hhcCCCCCCEEEccCC
Confidence               2345666777776665 333321                                      1122556666666666


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +++.+       ..+..+++|+.|+++++ .+..+.+   +..+++|++|++++|. ++.+..   .      ..+++|+
T Consensus       145 ~l~~~-------~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~---l------~~l~~L~  203 (291)
T 1h6t_A          145 KITDI-------TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---L------AGLKNLD  203 (291)
T ss_dssp             CCCCC-------GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---G------TTCTTCS
T ss_pred             cCCcc-------hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCChh---h------ccCCCCC
Confidence            55543       22345556666666664 3333312   4556666666666664 444311   1      1155666


Q ss_pred             eEecccC
Q 021510          246 TLKLQDL  252 (311)
Q Consensus       246 ~L~l~~c  252 (311)
                      .|+++++
T Consensus       204 ~L~l~~n  210 (291)
T 1h6t_A          204 VLELFSQ  210 (291)
T ss_dssp             EEEEEEE
T ss_pred             EEECcCC
Confidence            6666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.33  E-value=1.5e-11  Score=115.17  Aligned_cols=211  Identities=16%  Similarity=0.151  Sum_probs=120.3

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. ++.+.  +..++.+++|++|+++++ .++.+ ++..++.+++|++|+++++. +..+..     
T Consensus        47 ~~l~~L~~L~Ls~n~-i~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----  115 (549)
T 2z81_A           47 RACANLQVLILKSSR-INTIE--GDAFYSLGSLEHLDLSDN-HLSSL-SSSWFGPLSSLKYLNLMGNP-YQTLGV-----  115 (549)
T ss_dssp             SSCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCSC-CHHHHTTCTTCCEEECTTCC-CSSSCS-----
T ss_pred             hcCCcccEEECCCCC-cCccC--hhhccccccCCEEECCCC-ccCcc-CHHHhccCCCCcEEECCCCc-ccccch-----
Confidence            345667777777653 44421  233566677777777665 34443 12345666777777776653 221110     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                        ...+..+++|++|+++++..++.++.                                    ..+..+++|++|++++
T Consensus       116 --~~~~~~l~~L~~L~L~~n~~~~~~~~------------------------------------~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          116 --TSLFPNLTNLQTLRIGNVETFSEIRR------------------------------------IDFAGLTSLNELEIKA  157 (549)
T ss_dssp             --SCSCTTCTTCCEEEEEESSSCCEECT------------------------------------TTTTTCCEEEEEEEEE
T ss_pred             --hhhhhccCCccEEECCCCccccccCH------------------------------------hhhhcccccCeeeccC
Confidence              01234566677777766644443322                                    1123367888888888


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |+++..     .|..+..+++|+.|++.++. .... +...+..+++|++|+++++. ++.......    .....+++|
T Consensus       158 n~l~~~-----~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----~~~~~~~~L  225 (549)
T 2z81_A          158 LSLRNY-----QSQSLKSIRDIHHLTLHLSE-SAFL-LEIFADILSSVRYLELRDTN-LARFQFSPL----PVDEVSSPM  225 (549)
T ss_dssp             TTCCEE-----CTTTTTTCSEEEEEEEECSB-STTH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCC----SSCCCCCCC
T ss_pred             Cccccc-----ChhhhhccccCceEecccCc-cccc-chhhHhhcccccEEEccCCc-ccccccccc----chhhhhhcc
Confidence            866654     24566777888888888753 3333 44445668888888888876 544311100    011126788


Q ss_pred             CeEecccCccccc-----ccCCCcccCCCcccEEEEecCC
Q 021510          245 TTLKLQDLPKLRC-----LYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       245 ~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +.|.+.++. ++.     +....  ..+++|+.+++.+|.
T Consensus       226 ~~L~l~~n~-l~~~~~~~l~~~~--~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          226 KKLAFRGSV-LTDESFNELLKLL--RYILELSEVEFDDCT  262 (549)
T ss_dssp             CEEEEESCE-EEHHHHHHHHGGG--GGCTTCCEEEEESCE
T ss_pred             cceeccccc-cchhHHHHHHHHh--hhhcccccccccccc
Confidence            888887753 222     11111  356788999998886

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.4e-12  Score=113.47  Aligned_cols=238  Identities=15%  Similarity=0.153  Sum_probs=137.1

Q ss_pred             cccEEeeccccccccc-ccccccccCCCCccEEEEcCCCCCcccccchhh-hccCcccEEEEccccccceeccccccccc
Q 021510            9 LLQSLILHNLINMERL-CIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTT-KCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      .++.+.+.++. +..- .......-.+++|++|++++|. +....+...+ ..+++|++|+++++.-....+...     
T Consensus        65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-----  137 (310)
T 4glp_A           65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-----  137 (310)
T ss_dssp             CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-----
T ss_pred             ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhH-----
Confidence            45667777653 2210 0001112234679999999874 4443332222 778999999999875332211000     


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                      ......+++|++|+++++ .++..+.                                    ..+..+++|++|++++|+
T Consensus       138 ~~~~~~~~~L~~L~Ls~n-~l~~~~~------------------------------------~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          138 ELQQWLKPGLKVLSIAQA-HSPAFSC------------------------------------EQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             HHHTTBCSCCCEEEEECC-SSCCCCT------------------------------------TSCCCCTTCCEEECCSCT
T ss_pred             HHHhhhccCCCEEEeeCC-CcchhhH------------------------------------HHhccCCCCCEEECCCCC
Confidence            012235788999999887 3443322                                    112347889999999986


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCcccc--chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIF--SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      +...... ..+..+..+++|++|++++| .++.+.  +...+..+++|++|+++++. ++..... ....   ...+++|
T Consensus       181 l~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~-~~~~---~~~~~~L  253 (310)
T 4glp_A          181 GLGERGL-MAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP-SAPR---CMWSSAL  253 (310)
T ss_dssp             TCHHHHH-HTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS-CCSS---CCCCTTC
T ss_pred             Cccchhh-hHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh-hHHh---ccCcCcC
Confidence            5431000 00122357788999999986 444331  11234678899999999987 6554211 1111   1113789


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      ++|+++++ +++.++...    +++|++|+++++ +++.+|. .........+.+..+.|
T Consensus       254 ~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          254 NSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             CEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence            99999874 566776543    378999999876 4554443 33344556666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.32  E-value=1.3e-12  Score=112.66  Aligned_cols=172  Identities=17%  Similarity=0.284  Sum_probs=129.3

Q ss_pred             ccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcc
Q 021510           29 LKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVT  108 (311)
Q Consensus        29 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  108 (311)
                      .....+++|++|++++| .+..+   +.+..+++|++|+++++. +..++          .+..+++|++|+++++ .++
T Consensus        40 ~~~~~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n~-l~~~~----------~l~~l~~L~~L~l~~n-~l~  103 (291)
T 1h6t_A           40 VTQNELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGNK-LTDIK----------PLANLKNLGWLFLDEN-KVK  103 (291)
T ss_dssp             ECHHHHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCCG----------GGTTCTTCCEEECCSS-CCC
T ss_pred             cchhhcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCCc-cCCCc----------ccccCCCCCEEECCCC-cCC
Confidence            34467899999999997 55655   347789999999999864 44443          2457889999999887 344


Q ss_pred             ccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccE
Q 021510          109 SFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTR  188 (311)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~  188 (311)
                      .++.                                      +..+++|++|++++|+++.+       ..+..+++|+.
T Consensus       104 ~~~~--------------------------------------l~~l~~L~~L~L~~n~i~~~-------~~l~~l~~L~~  138 (291)
T 1h6t_A          104 DLSS--------------------------------------LKDLKKLKSLSLEHNGISDI-------NGLVHLPQLES  138 (291)
T ss_dssp             CGGG--------------------------------------GTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCE
T ss_pred             CChh--------------------------------------hccCCCCCEEECCCCcCCCC-------hhhcCCCCCCE
Confidence            4321                                      23479999999999988765       34567889999


Q ss_pred             EEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCC
Q 021510          189 LIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWP  268 (311)
Q Consensus       189 L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~  268 (311)
                      |+++++ .+..+   ..+..+++|++|++++|. ++.+..   .      ..+++|+.|+++++ .++.++. .  ..++
T Consensus       139 L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l------~~l~~L~~L~L~~N-~i~~l~~-l--~~l~  200 (291)
T 1h6t_A          139 LYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L------AGLTKLQNLYLSKN-HISDLRA-L--AGLK  200 (291)
T ss_dssp             EECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---G------TTCTTCCEEECCSS-CCCBCGG-G--TTCT
T ss_pred             EEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---h------cCCCccCEEECCCC-cCCCChh-h--ccCC
Confidence            999996 45544   237789999999999997 766532   1      22899999999986 6666643 2  5789


Q ss_pred             cccEEEEecCC
Q 021510          269 ALEILLVYGCD  279 (311)
Q Consensus       269 ~L~~L~i~~c~  279 (311)
                      +|+.|++.+++
T Consensus       201 ~L~~L~l~~n~  211 (291)
T 1h6t_A          201 NLDVLELFSQE  211 (291)
T ss_dssp             TCSEEEEEEEE
T ss_pred             CCCEEECcCCc
Confidence            99999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=4.7e-12  Score=119.81  Aligned_cols=168  Identities=18%  Similarity=0.269  Sum_probs=97.3

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|+.|++.++. +..+    +.++.+++|++|++++| .+..+.   .+..+++|++|++++|. +..++      
T Consensus        40 ~~L~~L~~L~l~~n~-i~~l----~~l~~l~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~-l~~l~------  103 (605)
T 1m9s_A           40 NELNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGN-KLTDIK---PLTNLKNLGWLFLDENK-IKDLS------  103 (605)
T ss_dssp             HHHTTCCCCBCTTCC-CCCC----TTGGGCTTCCEEECTTS-CCCCCG---GGGGCTTCCEEECCSSC-CCCCT------
T ss_pred             hcCCCCCEEECcCCC-CCCC----hHHccCCCCCEEEeeCC-CCCCCh---hhccCCCCCEEECcCCC-CCCCh------
Confidence            346677777777753 5443    34577788888888776 455542   26677788888887763 33332      


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                          .+..+++|++|+++++ .+..++                                      .+..+++|+.|++++
T Consensus       104 ----~l~~l~~L~~L~Ls~N-~l~~l~--------------------------------------~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A          104 ----SLKDLKKLKSLSLEHN-GISDIN--------------------------------------GLVHLPQLESLYLGN  140 (605)
T ss_dssp             ----TSTTCTTCCEEECTTS-CCCCCG--------------------------------------GGGGCTTCSEEECCS
T ss_pred             ----hhccCCCCCEEEecCC-CCCCCc--------------------------------------cccCCCccCEEECCC
Confidence                2445677777777776 333321                                      112356666666666


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      |.+..+       ..+..+++|+.|++++| .+..+.+   +..+++|++|++++|. +..+..   .      ..+++|
T Consensus       141 N~l~~l-------~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~~---l------~~l~~L  199 (605)
T 1m9s_A          141 NKITDI-------TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA---L------AGLKNL  199 (605)
T ss_dssp             SCCCCC-------GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG---G------TTCTTC
T ss_pred             CccCCc-------hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCCC-CCCChH---H------ccCCCC
Confidence            655544       23445566666666664 3333322   4556666666666664 544311   1      116666


Q ss_pred             CeEecccC
Q 021510          245 TTLKLQDL  252 (311)
Q Consensus       245 ~~L~l~~c  252 (311)
                      +.|++++|
T Consensus       200 ~~L~L~~N  207 (605)
T 1m9s_A          200 DVLELFSQ  207 (605)
T ss_dssp             SEEECCSE
T ss_pred             CEEEccCC
Confidence            66666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.30  E-value=2.8e-11  Score=101.91  Aligned_cols=176  Identities=16%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +.+++++++. +++.++.     +-.+++++|+++++ .+..+. +..+..+++|++|+++++ .+..++.        .
T Consensus        15 ~~~~l~~~~~-~l~~~p~-----~~~~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~--------~   77 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPS-----GIPADTEKLDLQST-GLATLS-DATFRGLTKLTWLNLDYN-QLQTLSA--------G   77 (251)
T ss_dssp             GGTEEECTTC-CCSSCCS-----CCCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCCT--------T
T ss_pred             CCeEEecCCC-CccccCC-----CCCCCCCEEEccCC-CcCccC-HhHhcCcccCCEEECCCC-cCCccCH--------h
Confidence            4567777764 4555422     22367888888875 344442 345677888888888885 3443331        1


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                      .+..+++|++|+++++ .++.++..                                    .+..+++|++|++++|+++
T Consensus        78 ~~~~l~~L~~L~L~~n-~l~~~~~~------------------------------------~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           78 VFDDLTELGTLGLANN-QLASLPLG------------------------------------VFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTT------------------------------------TTTTCTTCCEEECCSSCCC
T ss_pred             HhccCCcCCEEECCCC-cccccChh------------------------------------HhcccCCCCEEEcCCCcCC
Confidence            2345678888888776 34433321                                    1123678888888888776


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK  248 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  248 (311)
                      .+.     +..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+... .      +..+++|+.|+
T Consensus       121 ~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~------~~~l~~L~~L~  185 (251)
T 3m19_A          121 SLP-----SGVFDRLTKLKELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPHG-A------FDRLGKLQTIT  185 (251)
T ss_dssp             CCC-----TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT-T------TTTCTTCCEEE
T ss_pred             CcC-----hhHhccCCcccEEECcCC-cCCcc-CHHHcCcCcCCCEEECCCCc-CCccCHH-H------HhCCCCCCEEE
Confidence            551     223566778888888875 55555 33336677888888888876 5554321 1      11267788888


Q ss_pred             cccCc
Q 021510          249 LQDLP  253 (311)
Q Consensus       249 l~~c~  253 (311)
                      +++++
T Consensus       186 l~~N~  190 (251)
T 3m19_A          186 LFGNQ  190 (251)
T ss_dssp             CCSCC
T ss_pred             eeCCc
Confidence            77644

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.29  E-value=6.4e-11  Score=112.31  Aligned_cols=232  Identities=15%  Similarity=0.105  Sum_probs=119.6

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      ++++|+++++ +++.++..     -.++|++|++++| +++.+  +.   .+++|++|++++|. +..++.         
T Consensus        41 ~l~~L~ls~n-~L~~lp~~-----l~~~L~~L~L~~N-~l~~l--p~---~l~~L~~L~Ls~N~-l~~lp~---------   98 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDC-----LPAHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGNQ-LTSLPV---------   98 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSC-----CCTTCSEEEECSC-CCSCC--CC---CCTTCCEEEECSCC-CSCCCC---------
T ss_pred             CCcEEEecCC-CcCccChh-----hCCCCcEEEecCC-CCCCC--CC---cCCCCCEEEcCCCc-CCcCCC---------
Confidence            5889999985 47765321     2389999999997 56665  22   57999999999975 555542         


Q ss_pred             ceeeecccceEecCCCCCccccccCCC----------CCCCCCCccccccccccccccccccccccccccccc-------
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVE----------TPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEK-------  151 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~----------~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~-------  151 (311)
                         .+++|++|+++++ +++.++....          .....+ .....+..+.+..   +.+..-+..+..+       
T Consensus        99 ---~l~~L~~L~Ls~N-~l~~l~~~l~~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~---N~l~~l~~~~~~L~~L~L~~  170 (622)
T 3g06_A           99 ---LPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLP-VLPPGLQELSVSD---NQLASLPALPSELCKLWAYN  170 (622)
T ss_dssp             ---CCTTCCEEEECSC-CCCCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS---SCCSCCCCCCTTCCEEECCS
T ss_pred             ---CCCCCCEEECcCC-cCCCCCCCCCCcCEEECCCCCCCcCC-CCCCCCCEEECcC---CcCCCcCCccCCCCEEECCC
Confidence               5577888887776 3444332100          000000 0000111111111   0000000000000       


Q ss_pred             -------ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccc
Q 021510          152 -------VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQ  224 (311)
Q Consensus       152 -------~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  224 (311)
                             ..+++|+.|++++|+++.+      |.   .+++|+.|++.++ .+..+ +    ..+++|++|++++|. ++
T Consensus       171 N~l~~l~~~~~~L~~L~Ls~N~l~~l------~~---~~~~L~~L~L~~N-~l~~l-~----~~~~~L~~L~Ls~N~-L~  234 (622)
T 3g06_A          171 NQLTSLPMLPSGLQELSVSDNQLASL------PT---LPSELYKLWAYNN-RLTSL-P----ALPSGLKELIVSGNR-LT  234 (622)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSCC------CC---CCTTCCEEECCSS-CCSSC-C----CCCTTCCEEECCSSC-CS
T ss_pred             CCCCCCcccCCCCcEEECCCCCCCCC------CC---ccchhhEEECcCC-ccccc-C----CCCCCCCEEEccCCc-cC
Confidence                   0112333333333332222      11   1133444444442 22222 1    123556666666654 44


Q ss_pred             eecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          225 EIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      .++           ..+++|+.|+++++ +++.++.     .+++|++|++++| +++.+|..+........+.+..+.+
T Consensus       235 ~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          235 SLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             cCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            432           11677888888775 5666654     3577888888887 6667787777766777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.29  E-value=7.6e-12  Score=101.49  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=102.0

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      +.+++|++|+++++ .++.+   +.+..+++|++|++++| .+..++          .+..+++|++|+++++ .++...
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~l~~n-~~~~~~----------~l~~l~~L~~L~l~~n-~l~~~~  104 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDL---TGIEYAHNIKDLTINNI-HATNYN----------PISGLSNLERLRIMGK-DVTSDK  104 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCC---TTGGGCTTCSEEEEESC-CCSCCG----------GGTTCTTCCEEEEECT-TCBGGG
T ss_pred             hhcCCccEEeccCC-CccCh---HHHhcCCCCCEEEccCC-CCCcch----------hhhcCCCCCEEEeECC-ccCccc
Confidence            56778888888875 45554   24677888888888887 444332          3456788888888876 343311


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV  191 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i  191 (311)
                      .                                    ..+..+++|++|++++|+++..     .+..+..+++|++|++
T Consensus       105 ~------------------------------------~~l~~l~~L~~L~Ls~n~i~~~-----~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          105 I------------------------------------PNLSGLTSLTLLDISHSAHDDS-----ILTKINTLPKVNSIDL  143 (197)
T ss_dssp             S------------------------------------CCCTTCTTCCEEECCSSBCBGG-----GHHHHTTCSSCCEEEC
T ss_pred             C------------------------------------hhhcCCCCCCEEEecCCccCcH-----hHHHHhhCCCCCEEEc
Confidence            1                                    1123368888888888876642     1234567788999999


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  252 (311)
                      ++|..+..+ +  .+..+++|++|++++|. ++.+.   .      ...+++|+.|++++.
T Consensus       144 ~~n~~i~~~-~--~l~~l~~L~~L~l~~n~-i~~~~---~------l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          144 SYNGAITDI-M--PLKTLPELKSLNIQFDG-VHDYR---G------IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSCTBCCCC-G--GGGGCSSCCEEECTTBC-CCCCT---T------GGGCSSCCEEEECBC
T ss_pred             cCCCCcccc-H--hhcCCCCCCEEECCCCC-CcChH---H------hccCCCCCEEEeeCc
Confidence            887656665 3  36778899999998886 66542   1      122888999988874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=4.7e-12  Score=110.17  Aligned_cols=136  Identities=18%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCcc--ccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKY--IFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      +++|++|++++|++..+     .+..+..+++|++|+++++.-...  +.+...+..+++|++|++++|. ++.+.....
T Consensus       144 ~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~  217 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA  217 (310)
T ss_dssp             CSCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred             ccCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence            56777777777766544     134456677777777777543321  1011113456777777777775 543321000


Q ss_pred             ccCcCCcccCCccCeEecccCcccccc-cCCCcc-cCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCL-YPGMHS-SEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~-~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      .    .+..+++|++|+++++ .++.. +..... ..+++|++|++++| +++.+|..+.  .....+.++.++
T Consensus       218 ~----l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          218 A----LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             H----HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC
T ss_pred             H----HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc
Confidence            0    0011567777777764 34443 322200 11256777777665 4456665543  334444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=5.9e-12  Score=102.15  Aligned_cols=152  Identities=18%  Similarity=0.275  Sum_probs=109.4

Q ss_pred             hccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccc
Q 021510           58 KCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSS  137 (311)
Q Consensus        58 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~  137 (311)
                      ..+++|++|+++++ .+..++          ++..+++|++|+++++ .++.++                          
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~----------~l~~l~~L~~L~l~~n-~~~~~~--------------------------   82 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT----------GIEYAHNIKDLTINNI-HATNYN--------------------------   82 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT----------TGGGCTTCSEEEEESC-CCSCCG--------------------------
T ss_pred             hhcCCccEEeccCC-CccChH----------HHhcCCCCCEEEccCC-CCCcch--------------------------
Confidence            56889999999886 344443          3457889999999988 444332                          


Q ss_pred             ccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEE
Q 021510          138 EITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEI  217 (311)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l  217 (311)
                                  .+..+++|++|++++|+++..     .+..++.+++|+.|+++++ .+....+ ..+..+++|++|++
T Consensus        83 ------------~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n-~i~~~~~-~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           83 ------------PISGLSNLERLRIMGKDVTSD-----KIPNLSGLTSLTLLDISHS-AHDDSIL-TKINTLPKVNSIDL  143 (197)
T ss_dssp             ------------GGTTCTTCCEEEEECTTCBGG-----GSCCCTTCTTCCEEECCSS-BCBGGGH-HHHTTCSSCCEEEC
T ss_pred             ------------hhhcCCCCCEEEeECCccCcc-----cChhhcCCCCCCEEEecCC-ccCcHhH-HHHhhCCCCCEEEc
Confidence                        123478999999999977652     1456778899999999996 4444323 34788999999999


Q ss_pred             ccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          218 CSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       218 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      ++|..++.+..         +..+++|+.|++++| .++.++ ..  ..+++|++|++.+++
T Consensus       144 ~~n~~i~~~~~---------l~~l~~L~~L~l~~n-~i~~~~-~l--~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          144 SYNGAITDIMP---------LKTLPELKSLNIQFD-GVHDYR-GI--EDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSCTBCCCCGG---------GGGCSSCCEEECTTB-CCCCCT-TG--GGCSSCCEEEECBC-
T ss_pred             cCCCCccccHh---------hcCCCCCCEEECCCC-CCcChH-Hh--ccCCCCCEEEeeCcc
Confidence            99975666531         122899999999986 456654 22  468999999998865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.27  E-value=8.2e-11  Score=107.77  Aligned_cols=83  Identities=22%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+++|++|+++++ .++.+    +.++.+++|++|++++|. ++.+  +.   ..++|++|++++| .+..++       
T Consensus       171 ~~~~L~~L~L~~n-~l~~l----~~~~~l~~L~~L~l~~N~-l~~l--~~---~~~~L~~L~l~~n-~l~~lp-------  231 (454)
T 1jl5_A          171 LPPSLEFIAAGNN-QLEEL----PELQNLPFLTAIYADNNS-LKKL--PD---LPLSLESIVAGNN-ILEELP-------  231 (454)
T ss_dssp             CCTTCCEEECCSS-CCSSC----CCCTTCTTCCEEECCSSC-CSSC--CC---CCTTCCEEECCSS-CCSSCC-------
T ss_pred             CcccccEEECcCC-cCCcC----ccccCCCCCCEEECCCCc-CCcC--CC---CcCcccEEECcCC-cCCccc-------
Confidence            3468999999996 46664    356889999999998864 4444  11   2358999999887 344544       


Q ss_pred             cccceeeecccceEecCCCCCccccc
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                         .+..+++|++|+++++ .++.++
T Consensus       232 ---~~~~l~~L~~L~l~~N-~l~~l~  253 (454)
T 1jl5_A          232 ---ELQNLPFLTTIYADNN-LLKTLP  253 (454)
T ss_dssp             ---CCTTCTTCCEEECCSS-CCSSCC
T ss_pred             ---ccCCCCCCCEEECCCC-cCCccc
Confidence               2446788888888876 444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.26  E-value=2.6e-12  Score=121.54  Aligned_cols=190  Identities=17%  Similarity=0.259  Sum_probs=137.4

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .|..+..+.+.+. .+.+    ......+++|+.|++++|. +..+   +.+..+++|++|++++|. +..++       
T Consensus        19 ~l~~l~~l~l~~~-~i~~----~~~~~~L~~L~~L~l~~n~-i~~l---~~l~~l~~L~~L~Ls~N~-l~~~~-------   81 (605)
T 1m9s_A           19 AFAETIKDNLKKK-SVTD----AVTQNELNSIDQIIANNSD-IKSV---QGIQYLPNVTKLFLNGNK-LTDIK-------   81 (605)
T ss_dssp             HHHHHHHHHTTCS-CTTS----EECHHHHTTCCCCBCTTCC-CCCC---TTGGGCTTCCEEECTTSC-CCCCG-------
T ss_pred             HHHHHHHHhccCC-Cccc----ccchhcCCCCCEEECcCCC-CCCC---hHHccCCCCCEEEeeCCC-CCCCh-------
Confidence            3344445555542 2333    2345678999999999864 5555   357889999999999974 44443       


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                         .+..+++|+.|+++++ .+..++                                      .+..+++|+.|++++|
T Consensus        82 ---~l~~l~~L~~L~Ls~N-~l~~l~--------------------------------------~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           82 ---PLTNLKNLGWLFLDEN-KIKDLS--------------------------------------SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             ---GGGGCTTCCEEECCSS-CCCCCT--------------------------------------TSTTCTTCCEEECTTS
T ss_pred             ---hhccCCCCCEEECcCC-CCCCCh--------------------------------------hhccCCCCCEEEecCC
Confidence               2457899999999987 444432                                      1234799999999999


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      .+..+       ..+..+++|+.|++++| .+..+   ..+..+++|+.|++++|. +..+..   .      ..+++|+
T Consensus       120 ~l~~l-------~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l------~~l~~L~  178 (605)
T 1m9s_A          120 GISDI-------NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---L------AGLTKLQ  178 (605)
T ss_dssp             CCCCC-------GGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---G------TTCTTCC
T ss_pred             CCCCC-------ccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---h------ccCCCCC
Confidence            87765       34678899999999996 45544   247889999999999997 666532   1      2289999


Q ss_pred             eEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          246 TLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       246 ~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      .|++++| .+..++.   ...+++|+.|++.+|+
T Consensus       179 ~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          179 NLYLSKN-HISDLRA---LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSS-CCCBCGG---GTTCTTCSEEECCSEE
T ss_pred             EEECcCC-CCCCChH---HccCCCCCEEEccCCc
Confidence            9999986 5666532   2578999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.25  E-value=5.2e-11  Score=100.29  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=117.5

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      +-.+++++|+++++. ++.+.  ...++.+++|++|+++++ .++.+ ++..+..+++|++|+++++. +..++.     
T Consensus        32 ~~~~~l~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-----  100 (251)
T 3m19_A           32 GIPADTEKLDLQSTG-LATLS--DATFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL-----  100 (251)
T ss_dssp             CCCTTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT-----
T ss_pred             CCCCCCCEEEccCCC-cCccC--HhHhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCc-ccccCh-----
Confidence            334689999999964 66642  335688999999999996 56654 24557889999999999964 444442     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                         ..+..+++|++|+++++ .++.++..                                    .+..+++|++|++++
T Consensus       101 ---~~~~~l~~L~~L~L~~N-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A          101 ---GVFDHLTQLDKLYLGGN-QLKSLPSG------------------------------------VFDRLTKLKELRLNT  140 (251)
T ss_dssp             ---TTTTTCTTCCEEECCSS-CCCCCCTT------------------------------------TTTTCTTCCEEECCS
T ss_pred             ---hHhcccCCCCEEEcCCC-cCCCcChh------------------------------------HhccCCcccEEECcC
Confidence               13356799999999987 56554431                                    113378999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      |+++.+     .+..+..+++|+.|+++++ .+..+ +...+..+++|++|++++++
T Consensus       141 N~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          141 NQLQSI-----PAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             SCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred             CcCCcc-----CHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCc
Confidence            988876     1235778899999999995 56656 44447889999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.22  E-value=1.8e-10  Score=105.50  Aligned_cols=33  Identities=21%  Similarity=0.108  Sum_probs=22.0

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccc
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINC   71 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c   71 (311)
                      ++|++|+++++ .++.+  + .++.+++|++|+++++
T Consensus       131 ~~L~~L~L~~n-~l~~l--p-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKL--P-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCCEEECCSS-CCSSC--C-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCC-CCCCC--c-ccCCCCCCCEEECCCC
Confidence            57777777775 44444  2 3667777777777775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.22  E-value=5e-13  Score=126.35  Aligned_cols=118  Identities=13%  Similarity=0.080  Sum_probs=64.9

Q ss_pred             CCCccEEEeeee----eceeeeccCCCCCCCCCCCcccEEEEecCCC-CccccchHHHhccCCCcEEEEccccccceecc
Q 021510          154 LPNLEVLEISEI----NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHK-LKYIFSASMIRSLKQLQRLEICSCEDLQEIIS  228 (311)
Q Consensus       154 l~~L~~L~l~~~----~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  228 (311)
                      +++|++|++.++    .++........+..+..+++|++|++++|.+ +...........+++|++|++++|. +++...
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~  480 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL  480 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence            677888887642    3433200000001123467888888877653 3333233333457788888888776 433111


Q ss_pred             cccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          229 ENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       229 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      ......      +++|+.|++++|+ ++..........+++|++|++++|.
T Consensus       481 ~~~~~~------~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          481 MEFSRG------CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHTC------CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHhc------CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            111111      7888888888887 4432211112357888888888887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=2.3e-12  Score=121.83  Aligned_cols=93  Identities=14%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             cCCcccEEeeccccccccccccc------------ccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDR------------LKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSK   73 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~------------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~   73 (311)
                      .|++|++|++.++....+....+            .-...+++|++|++++|. +....+......+++|++|++.+|..
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            47899999999987665432110            012467899999999985 54432223333689999999999865


Q ss_pred             cce--ecccccccccccceeeecccceEecCCCCCccc
Q 021510           74 MKE--IFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTS  109 (311)
Q Consensus        74 l~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  109 (311)
                      +..  +..         ....+++|++|++++|. +++
T Consensus       143 ~~~~~l~~---------~~~~~~~L~~L~L~~~~-i~~  170 (594)
T 2p1m_B          143 FSTDGLAA---------IAATCRNLKELDLRESD-VDD  170 (594)
T ss_dssp             EEHHHHHH---------HHHHCTTCCEEECTTCE-EEC
T ss_pred             CCHHHHHH---------HHHhCCCCCEEeCcCCc-cCC
Confidence            543  211         12367899999999885 443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.18  E-value=3.6e-10  Score=107.24  Aligned_cols=111  Identities=23%  Similarity=0.284  Sum_probs=77.8

Q ss_pred             ccCCCccEEEeeeee-ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccc
Q 021510          152 VALPNLEVLEISEIN-VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISEN  230 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~-l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  230 (311)
                      ..+++|+.|++++|+ ...+     .|..+..+++|++|++++| .++.+.+ ..+..+++|++|+++++. ++.+... 
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~-----~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~-  536 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENF-----LPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF-  536 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGE-----ECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBCCCG-
T ss_pred             ccchhhhhhhhhhccccccc-----CchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCCChh-
Confidence            346888999998883 3333     1456778889999999996 5666634 347889999999999986 7666321 


Q ss_pred             cccCcCCcccCCccCeEecccCcccccccCCCcccCC-CcccEEEEecCC
Q 021510          231 RTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEW-PALEILLVYGCD  279 (311)
Q Consensus       231 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~i~~c~  279 (311)
                      .      +..+++|+.|+++++ +++.++..... .+ ++|++|++.++|
T Consensus       537 ~------~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          537 P------YKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND  578 (635)
T ss_dssp             G------GTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCC
T ss_pred             H------HhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCC
Confidence            1      122889999999884 56666554422 34 679999998744

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.17  E-value=1.8e-11  Score=103.89  Aligned_cols=166  Identities=14%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+.++..+++.+. .++++    ..+..+++|++|+++++ .++.+   +.+..+++|++|+++++ .+..++       
T Consensus        17 ~l~~l~~l~l~~~-~i~~~----~~~~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N-~i~~~~-------   79 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTDL----VSQKELSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHN-QISDLS-------   79 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTSE----ECHHHHTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCG-------
T ss_pred             HHHHHHHHHhcCC-Ccccc----cchhhcCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCC-ccCCCh-------
Confidence            3445555555553 34443    23456677777777775 45554   24566777777777765 344333       


Q ss_pred             cccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee
Q 021510           86 NAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI  165 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  165 (311)
                         .+..+++|++|+++++ .++.++..                                      . .++|++|++++|
T Consensus        80 ---~l~~l~~L~~L~L~~N-~l~~l~~~--------------------------------------~-~~~L~~L~L~~N  116 (263)
T 1xeu_A           80 ---PLKDLTKLEELSVNRN-RLKNLNGI--------------------------------------P-SACLSRLFLDNN  116 (263)
T ss_dssp             ---GGTTCSSCCEEECCSS-CCSCCTTC--------------------------------------C-CSSCCEEECCSS
T ss_pred             ---hhccCCCCCEEECCCC-ccCCcCcc--------------------------------------c-cCcccEEEccCC
Confidence               1345667777777765 34333210                                      0 155666666666


Q ss_pred             eceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccC
Q 021510          166 NVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLT  245 (311)
Q Consensus       166 ~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~  245 (311)
                      +++.+       +.+..+++|+.|+++++ .++.+ +  .+..+++|++|++++|. ++.+   ...      ..+++|+
T Consensus       117 ~l~~~-------~~l~~l~~L~~L~Ls~N-~i~~~-~--~l~~l~~L~~L~L~~N~-i~~~---~~l------~~l~~L~  175 (263)
T 1xeu_A          117 ELRDT-------DSLIHLKNLEILSIRNN-KLKSI-V--MLGFLSKLEVLDLHGNE-ITNT---GGL------TRLKKVN  175 (263)
T ss_dssp             CCSBS-------GGGTTCTTCCEEECTTS-CCCBC-G--GGGGCTTCCEEECTTSC-CCBC---TTS------TTCCCCC
T ss_pred             ccCCC-------hhhcCcccccEEECCCC-cCCCC-h--HHccCCCCCEEECCCCc-Ccch---HHh------ccCCCCC
Confidence            55543       12445556666666663 34433 2  24556666666666664 4433   111      1155666


Q ss_pred             eEecccC
Q 021510          246 TLKLQDL  252 (311)
Q Consensus       246 ~L~l~~c  252 (311)
                      .|+++++
T Consensus       176 ~L~l~~N  182 (263)
T 1xeu_A          176 WIDLTGQ  182 (263)
T ss_dssp             EEEEEEE
T ss_pred             EEeCCCC
Confidence            6666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=4.2e-12  Score=119.96  Aligned_cols=95  Identities=13%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceeccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      .+++|++|++.+|..+..... ......+++|++|++++|. +++..+   ......+++|++|++++|.  ..+.....
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l  203 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSAL  203 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHH
Confidence            478999999999866554110 1122467899999998876 443211   2233467788999888875  11110000


Q ss_pred             ccccccceeeecccceEecCCCCCcc
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVT  108 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~  108 (311)
                          ......+++|++|++.+|..++
T Consensus       204 ----~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          204 ----ERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             ----HHHHHHCTTCCEEECCTTSCHH
T ss_pred             ----HHHHHhCCCCcEEecCCCCcHH
Confidence                0011246888888888774433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=8.2e-12  Score=111.95  Aligned_cols=251  Identities=13%  Similarity=0.039  Sum_probs=134.5

Q ss_pred             cCCcccEEeeccccccccccc--ccccccCCCCccEEEEcCC--CCCcccccch------hhhccCcccEEEEccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCI--DRLKVESFNQLKNIEAYNC--DKLSNIFWFS------TTKCLPRLERIAVINCSKMK   75 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~--~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~------~~~~l~~L~~L~i~~c~~l~   75 (311)
                      .+++|++|+++++. +.....  ....+..+++|++|++++|  .++....|..      .+..+++|++|+++++.--.
T Consensus        30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            45789999999874 444211  0123567899999999887  3333322211      23578899999998874322


Q ss_pred             ----eecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccc---------ccccccccccccccccc
Q 021510           76 ----EIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQV---------SQEESTAMYCSSEITLD  142 (311)
Q Consensus        76 ----~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~---------~~~~~l~l~~~~~~~~~  142 (311)
                          .++         ..+..+++|++|++++|. ++...........   ...         ..+..+.+..   +.+.
T Consensus       109 ~~~~~l~---------~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l---~~l~~~~~~~~~~~L~~L~L~~---n~l~  172 (386)
T 2ca6_A          109 TAQEPLI---------DFLSKHTPLEHLYLHNNG-LGPQAGAKIARAL---QELAVNKKAKNAPPLRSIICGR---NRLE  172 (386)
T ss_dssp             TTHHHHH---------HHHHHCTTCCEEECCSSC-CHHHHHHHHHHHH---HHHHHHHHHHTCCCCCEEECCS---SCCT
T ss_pred             HHHHHHH---------HHHHhCCCCCEEECcCCC-CCHHHHHHHHHHH---HHHhhhhhcccCCCCcEEECCC---CCCC
Confidence                111         133567889999998873 4322110000000   000         0111122211   1111


Q ss_pred             --cccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCc----cccchHHHhccCCCcEEE
Q 021510          143 --ISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLK----YIFSASMIRSLKQLQRLE  216 (311)
Q Consensus       143 --~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~~~l~~L~~L~  216 (311)
                        ....+...+..+++|++|++++|+++........+..+..+++|+.|++++|. ++    ...+. .+..+++|++|+
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l~~~~~L~~L~  250 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELG  250 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEE
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HHccCCCcCEEE
Confidence              11111123345788999999988665211000012255677889999998864 42    11133 367788899999


Q ss_pred             EccccccceecccccccCcCCcccCCccCeEecccCccccc-----ccCCCcccCCCcccEEEEecCC
Q 021510          217 ICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC-----LYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       217 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +++|. +....... .........+++|+.|++++|. ++.     ++... ...+++|++|++.+|+
T Consensus       251 L~~n~-i~~~~~~~-l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDCL-LSARGAAA-VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTCC-CCHHHHHH-HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred             CCCCC-CchhhHHH-HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence            99887 54331000 0000000117889999998864 444     43221 1247889999998875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.12  E-value=3.5e-10  Score=107.31  Aligned_cols=87  Identities=21%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|++|++++|+++.+     .|..+..+++|+.|+++++ +++.+.+ ..+..+++|++|+++++. +..+... .
T Consensus       491 ~~l~~L~~L~Ls~N~L~~l-----~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~-~  561 (635)
T 4g8a_A          491 TELRNLTFLDLSQCQLEQL-----SPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQ-E  561 (635)
T ss_dssp             TTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCSS-C
T ss_pred             hhccccCEEECCCCccCCc-----ChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCHH-H
Confidence            4467777777777777666     2344667777777777774 5555533 336667777777777775 5554321 1


Q ss_pred             ccCcCCcccCCccCeEecccC
Q 021510          232 TDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c  252 (311)
                      ...     ..++|+.|+++++
T Consensus       562 l~~-----l~~~L~~L~L~~N  577 (635)
T 4g8a_A          562 LQH-----FPSSLAFLNLTQN  577 (635)
T ss_dssp             TTC-----CCTTCCEEECTTC
T ss_pred             HHh-----hhCcCCEEEeeCC
Confidence            111     0256777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.06  E-value=4.8e-10  Score=95.10  Aligned_cols=146  Identities=22%  Similarity=0.275  Sum_probs=111.9

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++ +++.+    +.++.+++|++|+++++ .++.+.  . +..+++|++|+++++ .+..++.     
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l----~~l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N-~l~~l~~-----  102 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSL----AGMQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRN-RLKNLNG-----  102 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSS-CCSCCTT-----
T ss_pred             hhcCcCcEEECcCC-Ccccc----hHHhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCC-ccCCcCc-----
Confidence            45789999999997 46664    35688999999999996 566662  2 788999999999996 4444442     


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                           ... ++|++|+++++ .++.++.                                      +..+++|++|++++
T Consensus       103 -----~~~-~~L~~L~L~~N-~l~~~~~--------------------------------------l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A          103 -----IPS-ACLSRLFLDNN-ELRDTDS--------------------------------------LIHLKNLEILSIRN  137 (263)
T ss_dssp             -----CCC-SSCCEEECCSS-CCSBSGG--------------------------------------GTTCTTCCEEECTT
T ss_pred             -----ccc-CcccEEEccCC-ccCCChh--------------------------------------hcCcccccEEECCC
Confidence                 223 89999999997 4554321                                      23479999999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      |+++.+       +.+..+++|+.|+++++ .+..+   ..+..+++|+.|++++++
T Consensus       138 N~i~~~-------~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          138 NKLKSI-------VMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             SCCCBC-------GGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             CcCCCC-------hHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence            988876       24667889999999996 55544   236789999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=5.3e-11  Score=112.43  Aligned_cols=252  Identities=10%  Similarity=-0.051  Sum_probs=121.2

Q ss_pred             CCc-ccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccc---cchhhhccCcccEEEEccccccceeccccc
Q 021510            7 FPL-LQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIF---WFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         7 l~~-L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      ++. |++|++.+|........ ......+++|++|++++|. +.+..   .......+++|++|+++++..- .+.....
T Consensus       136 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~-~~~~~~l  212 (592)
T 3ogk_B          136 RADDLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFA-KISPKDL  212 (592)
T ss_dssp             HGGGCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCS-SCCHHHH
T ss_pred             ccccCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCC-ccCHHHH
Confidence            445 88888888764432100 1112367888888888874 22221   1234556778888887665321 1000000


Q ss_pred             ccccccceeeecccceEecCCCCCccccc-------------cCCCCCC---CC---CCccccccccccccccccccccc
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFC-------------CEVETPS---AS---PNRQVSQEESTAMYCSSEITLDI  143 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-------------~~~~~~~---~~---~~~~~~~~~~l~l~~~~~~~~~~  143 (311)
                          ......+++|++|++.+|. +..++             .+.....   ..   .......+..+.+....      
T Consensus       213 ----~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------  281 (592)
T 3ogk_B          213 ----ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG------  281 (592)
T ss_dssp             ----HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC------
T ss_pred             ----HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc------
Confidence                0012345777777777652 22211             1100000   00   00000001111111100      


Q ss_pred             ccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcc----
Q 021510          144 STLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICS----  219 (311)
Q Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~----  219 (311)
                      ...+......+++|++|++++|.++....    +..+..+++|++|++.++  +.+.........+++|++|++++    
T Consensus       282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~----~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~  355 (592)
T 3ogk_B          282 PNEMPILFPFAAQIRKLDLLYALLETEDH----CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADE  355 (592)
T ss_dssp             TTTGGGGGGGGGGCCEEEETTCCCCHHHH----HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred             hhHHHHHHhhcCCCcEEecCCCcCCHHHH----HHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccc
Confidence            00011112346778888887775332100    111346677888888742  22221223345677888888885    


Q ss_pred             ------ccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEec---CCCccccc
Q 021510          220 ------CEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG---CDKLKIFA  285 (311)
Q Consensus       220 ------c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~---c~~l~~lp  285 (311)
                            |..++.......      ...+++|++|.+ .|..++..........+++|++|++.+   |.+++..|
T Consensus       356 ~~~~~~~~~~~~~~~~~l------~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p  423 (592)
T 3ogk_B          356 QGMEDEEGLVSQRGLIAL------AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP  423 (592)
T ss_dssp             STTSSTTCCCCHHHHHHH------HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred             cccccccCccCHHHHHHH------HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence                  654543211100      012788888888 556665543222223478899999984   66777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.04  E-value=5.5e-10  Score=91.12  Aligned_cols=134  Identities=15%  Similarity=0.132  Sum_probs=71.5

Q ss_pred             CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccccc
Q 021510           33 SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC  112 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  112 (311)
                      ..++|++|+++++ .++.+ ++..+..+++|++|+++++ .+..++.        ..+..+++|++|+++++ .++.++.
T Consensus        26 ~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~   93 (208)
T 2o6s_A           26 IPAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGN-KLQSLPN--------GVFNKLTSLTYLNLSTN-QLQSLPN   93 (208)
T ss_dssp             CCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCC-ccCccCh--------hhcCCCCCcCEEECCCC-cCCccCH
Confidence            3467777777775 34443 2234556777777777764 3333331        11234566777776665 3333222


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEe
Q 021510          113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVW  192 (311)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~  192 (311)
                      .                                    .+..+++|++|++++|+++.+     .+..+..+++|+.|+++
T Consensus        94 ~------------------------------------~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           94 G------------------------------------VFDKLTQLKELALNTNQLQSL-----PDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             T------------------------------------TTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECC
T ss_pred             h------------------------------------HhcCccCCCEEEcCCCcCccc-----CHhHhccCCcCCEEECC
Confidence            1                                    012256666677666655544     11224556666666666


Q ss_pred             cCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          193 HCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       193 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      ++ .+..+ +...+..+++|++|++++++
T Consensus       133 ~N-~l~~~-~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          133 QN-QLKSV-PDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SS-CCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred             CC-cccee-CHHHhccCCCccEEEecCCC
Confidence            64 34434 33334556666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=89.87  Aligned_cols=151  Identities=12%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      +++++++. +++.++.     .-.+.+++|+++++ .++.+.+...+..+++|++|+++++. +..++.        ..+
T Consensus        14 ~~l~~s~n-~l~~iP~-----~~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~--------~~~   77 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPE-----HIPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE--------GAF   77 (220)
T ss_dssp             TEEECCSS-CCSSCCS-----CCCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT--------TTT
T ss_pred             CEeEeCCC-CcccCcc-----CCCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH--------HHh
Confidence            45666663 3555421     22356788888875 45555333456778888888887753 444442        124


Q ss_pred             eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510           91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI  170 (311)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i  170 (311)
                      ..+++|++|+++++ .++.++..                                    .+..+++|++|++++|+++.+
T Consensus        78 ~~l~~L~~L~Ls~N-~l~~~~~~------------------------------------~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           78 EGASGVNEILLTSN-RLENVQHK------------------------------------MFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCGG------------------------------------GGTTCSSCCEEECTTSCCCCB
T ss_pred             CCCCCCCEEECCCC-ccCccCHh------------------------------------HhcCCcCCCEEECCCCcCCeE
Confidence            45677888888776 34433221                                    123367888888888877665


Q ss_pred             eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                           .|..+..+++|+.|+++++ .++.+.+ ..+..+++|++|++++++
T Consensus       121 -----~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          121 -----GNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             -----CTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred             -----CHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecCcC
Confidence                 2345667778888888774 5554523 336677788888887776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.03  E-value=1.2e-09  Score=102.45  Aligned_cols=191  Identities=14%  Similarity=0.126  Sum_probs=123.9

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +|++|+++++ +++.++.     +-+++|++|+++++ +++.+  +   ..+++|++|+++++ .+..++.         
T Consensus        60 ~L~~L~Ls~n-~L~~lp~-----~l~~~L~~L~Ls~N-~l~~i--p---~~l~~L~~L~Ls~N-~l~~ip~---------  117 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPD-----NLPPQITVLEITQN-ALISL--P---ELPASLEYLDACDN-RLSTLPE---------  117 (571)
T ss_dssp             TCSEEECCSS-CCSCCCS-----CCCTTCSEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSCCCC---------
T ss_pred             CccEEEeCCC-CCCccCH-----hHcCCCCEEECcCC-CCccc--c---cccCCCCEEEccCC-CCCCcch---------
Confidence            7888888885 4665422     12478888888886 45554  2   45788888888886 4444441         


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                         ...+|++|+++++ +++.++.                                        .+++|+.|++++|+++
T Consensus       118 ---l~~~L~~L~Ls~N-~l~~lp~----------------------------------------~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          118 ---LPASLKHLDVDNN-QLTMLPE----------------------------------------LPALLEYINADNNQLT  153 (571)
T ss_dssp             ---CCTTCCEEECCSS-CCSCCCC----------------------------------------CCTTCCEEECCSSCCS
T ss_pred             ---hhcCCCEEECCCC-cCCCCCC----------------------------------------cCccccEEeCCCCccC
Confidence               1127888888876 4443322                                        1688999999999887


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEe
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLK  248 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~  248 (311)
                      .+      |.   .+++|+.|+++++ .++.+ |.  +.  ++|+.|++++|. ++.++.   ... .-....+.|+.|+
T Consensus       154 ~l------p~---~l~~L~~L~Ls~N-~L~~l-p~--l~--~~L~~L~Ls~N~-L~~lp~---~~~-~L~~~~~~L~~L~  213 (571)
T 3cvr_A          154 ML------PE---LPTSLEVLSVRNN-QLTFL-PE--LP--ESLEALDVSTNL-LESLPA---VPV-RNHHSEETEIFFR  213 (571)
T ss_dssp             CC------CC---CCTTCCEEECCSS-CCSCC-CC--CC--TTCCEEECCSSC-CSSCCC---CC---------CCEEEE
T ss_pred             cC------CC---cCCCcCEEECCCC-CCCCc-ch--hh--CCCCEEECcCCC-CCchhh---HHH-hhhcccccceEEe
Confidence            66      33   4678999999986 45555 43  23  789999999986 765532   100 0000122238999


Q ss_pred             cccCcccccccCCCcccCCCcccEEEEecCCCcccccccc
Q 021510          249 LQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADL  288 (311)
Q Consensus       249 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~  288 (311)
                      ++++ .++.++...  ..+++|+.|++.+++--...|..+
T Consensus       214 Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          214 CREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             cCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHH
Confidence            9884 677777655  458899999999987655555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.03  E-value=1e-09  Score=91.13  Aligned_cols=60  Identities=22%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +++|++|++++|+++.+      |..+..+++|+.|+++++ .+..+ +...+..+++|++|++++++
T Consensus       111 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          111 LVHLKELFMCCNKLTEL------PRGIERLTHLTHLALDQN-QLKSI-PHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTCCEEECCSSCCCSC------CTTGGGCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred             chhhCeEeccCCccccc------CcccccCCCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCC
Confidence            45566666666655543      444455555666666553 44434 22334555556666555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.02  E-value=5.8e-12  Score=115.37  Aligned_cols=89  Identities=17%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             CcccEEEEecCCCCcccc---chHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccc---
Q 021510          184 QNLTRLIVWHCHKLKYIF---SASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRC---  257 (311)
Q Consensus       184 ~~L~~L~i~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~---  257 (311)
                      ++|++|++++| .++...   -...+..+++|++|++++|. +.......-..  .....+++|++|++++| .++.   
T Consensus       199 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~--~~~~~~~~L~~L~L~~n-~l~~~~~  273 (461)
T 1z7x_W          199 CQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCP--GLLHPSSRLRTLWIWEC-GITAKGC  273 (461)
T ss_dssp             CCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred             CCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHH--HHhcCCCCceEEECcCC-CCCHHHH
Confidence            35666666665 222210   01124455666666666664 33221000000  00001566777777765 4444   


Q ss_pred             --ccCCCcccCCCcccEEEEecCC
Q 021510          258 --LYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       258 --l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                        ++...  ..+++|++|++++|.
T Consensus       274 ~~l~~~l--~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          274 GDLCRVL--RAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHH--HHCTTCCEEECTTCC
T ss_pred             HHHHHHH--hhCCCcceEECCCCC
Confidence              22211  236677777777663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.00  E-value=3.7e-09  Score=87.11  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=45.8

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT  232 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  232 (311)
                      +++|++|++++|+++.+      |. .+..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. ++.+...   
T Consensus        79 l~~L~~L~Ls~N~l~~l------~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~---  146 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITEL------PKSLFEGLFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAKG---  146 (220)
T ss_dssp             CSSCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT---
T ss_pred             CcCCCEEECCCCcCCcc------CHhHccCCCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECHH---
Confidence            56667777777666654      22 2455666777766663 4444422 235566667777766665 5444211   


Q ss_pred             cCcCCcccCCccCeEecccC
Q 021510          233 DQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~c  252 (311)
                          .+..+++|+.|++.+.
T Consensus       147 ----~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          147 ----TFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             ----TTTTCTTCCEEECCSS
T ss_pred             ----HHhCCCCCCEEEeCCC
Confidence                1112566666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=4.8e-11  Score=106.04  Aligned_cols=94  Identities=10%  Similarity=-0.091  Sum_probs=56.1

Q ss_pred             CcccEEeecccccccccccc--cccccCCC-CccEEEEcCCCCCcccccchhhhcc-----CcccEEEEccccccceecc
Q 021510            8 PLLQSLILHNLINMERLCID--RLKVESFN-QLKNIEAYNCDKLSNIFWFSTTKCL-----PRLERIAVINCSKMKEIFS   79 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~--~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~~~~   79 (311)
                      ++|++|+++++. ++.....  ...+..++ +|++|++++| .+....+ ..+..+     ++|++|++++|. +.....
T Consensus        22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~   97 (362)
T 3goz_A           22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS-DELVQILAAIPANVTSLNLSGNF-LSYKSS   97 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH-HHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH-HHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence            459999999975 5553210  03345677 8999999987 5555432 233333     899999999875 332211


Q ss_pred             cccccccccceeee-cccceEecCCCCCcccc
Q 021510           80 IGEEVDNAIEKIEF-AQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        80 ~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l  110 (311)
                      ...    ...+..+ ++|++|+++++. ++..
T Consensus        98 ~~l----~~~l~~~~~~L~~L~Ls~N~-l~~~  124 (362)
T 3goz_A           98 DEL----VKTLAAIPFTITVLDLGWND-FSSK  124 (362)
T ss_dssp             HHH----HHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred             HHH----HHHHHhCCCCccEEECcCCc-CCcH
Confidence            000    0012233 789999998873 5544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.98  E-value=7.8e-10  Score=87.04  Aligned_cols=137  Identities=21%  Similarity=0.278  Sum_probs=78.0

Q ss_pred             cCCCCccEEEEcCCCCCc--ccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccc
Q 021510           32 ESFNQLKNIEAYNCDKLS--NIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTS  109 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  109 (311)
                      ...++|++|++++|. ++  .+  +..+..+++|++|++++|. +..+.          .+..+++|++|+++++. ++.
T Consensus        21 ~~~~~L~~L~l~~n~-l~~~~i--~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~l~~L~~L~Ls~N~-l~~   85 (168)
T 2ell_A           21 RTPAAVRELVLDNCK-SNDGKI--EGLTAEFVNLEFLSLINVG-LISVS----------NLPKLPKLKKLELSENR-IFG   85 (168)
T ss_dssp             SCTTSCSEEECCSCB-CBTTBC--SSCCGGGGGCCEEEEESSC-CCCCS----------SCCCCSSCCEEEEESCC-CCS
T ss_pred             CCcccCCEEECCCCC-CChhhH--HHHHHhCCCCCEEeCcCCC-CCChh----------hhccCCCCCEEECcCCc-Cch
Confidence            345778888887764 43  33  3345667777777777764 33331          34456777777777662 332


Q ss_pred             -cccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccE
Q 021510          110 -FCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTR  188 (311)
Q Consensus       110 -l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~  188 (311)
                       ++.                                     ....+++|+.|++++|+++.+..    +..+..+++|+.
T Consensus        86 ~~~~-------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~l~~L~~  124 (168)
T 2ell_A           86 GLDM-------------------------------------LAEKLPNLTHLNLSGNKLKDIST----LEPLKKLECLKS  124 (168)
T ss_dssp             CCCH-------------------------------------HHHHCTTCCEEECBSSSCCSSGG----GGGGSSCSCCCE
T ss_pred             HHHH-------------------------------------HHhhCCCCCEEeccCCccCcchh----HHHHhcCCCCCE
Confidence             111                                     01225677777777776655411    133556667777


Q ss_pred             EEEecCCCCccccc--hHHHhccCCCcEEEEcccccccee
Q 021510          189 LIVWHCHKLKYIFS--ASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       189 L~i~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      |+++++ .+....+  ...+..+++|++|++++|. ++++
T Consensus       125 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~  162 (168)
T 2ell_A          125 LDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEA  162 (168)
T ss_dssp             EECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBC
T ss_pred             EEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhc
Confidence            777775 3333312  1235667777777777775 4444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.98  E-value=6.2e-10  Score=87.62  Aligned_cols=134  Identities=16%  Similarity=0.206  Sum_probs=98.3

Q ss_pred             CccCCcccEEeeccccccc--ccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccc
Q 021510            4 CDAFPLLQSLILHNLINME--RLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIG   81 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~--~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~   81 (311)
                      ....++|++|+++++. ++  .+   +..++.+++|++|++++|. ++.+   ..+..+++|++|++++|.-...++.  
T Consensus        20 ~~~~~~L~~L~l~~n~-l~~~~i---~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~--   89 (168)
T 2ell_A           20 NRTPAAVRELVLDNCK-SNDGKI---EGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDM--   89 (168)
T ss_dssp             TSCTTSCSEEECCSCB-CBTTBC---SSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCH--
T ss_pred             cCCcccCCEEECCCCC-CChhhH---HHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHH--
Confidence            3456899999999975 55  43   3345789999999999975 6665   5677899999999999754332331  


Q ss_pred             cccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEE
Q 021510           82 EEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLE  161 (311)
Q Consensus        82 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~  161 (311)
                             ....+++|++|+++++ .++.++.                                   ...+..+++|+.|+
T Consensus        90 -------~~~~l~~L~~L~Ls~N-~l~~~~~-----------------------------------~~~l~~l~~L~~L~  126 (168)
T 2ell_A           90 -------LAEKLPNLTHLNLSGN-KLKDIST-----------------------------------LEPLKKLECLKSLD  126 (168)
T ss_dssp             -------HHHHCTTCCEEECBSS-SCCSSGG-----------------------------------GGGGSSCSCCCEEE
T ss_pred             -------HHhhCCCCCEEeccCC-ccCcchh-----------------------------------HHHHhcCCCCCEEE
Confidence                   2335899999999998 5555432                                   01224479999999


Q ss_pred             eeeeeceeeeccCCCCC----CCCCCCcccEEEEecCCC
Q 021510          162 ISEINVDQIWHYNHLPV----TFPRFQNLTRLIVWHCHK  196 (311)
Q Consensus       162 l~~~~l~~i~~~~~~p~----~~~~l~~L~~L~i~~c~~  196 (311)
                      +++|.++.+      |.    .+..+++|++|++.+|..
T Consensus       127 l~~N~l~~~------~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          127 LFNCEVTNL------NDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CCSSGGGTS------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eeCCcCcch------HHHHHHHHHhCccCcEecCCCCCh
Confidence            999977765      33    467889999999998743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.98  E-value=1.2e-09  Score=89.14  Aligned_cols=160  Identities=17%  Similarity=0.181  Sum_probs=101.1

Q ss_pred             cCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccccc
Q 021510           60 LPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEI  139 (311)
Q Consensus        60 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~  139 (311)
                      .++|++|+++++. +..++.        ..+..+++|++|+++++ +++.++..                          
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~--------------------------   70 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPN--------GVFDELTSLTQLYLGGN-KLQSLPNG--------------------------   70 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCT--------TTTTTCTTCSEEECCSS-CCCCCCTT--------------------------
T ss_pred             CCCCcEEEcCCCc-cCcCCh--------hhhcccccCcEEECCCC-ccCccChh--------------------------
Confidence            4678888888863 444432        12346788888888876 45443321                          


Q ss_pred             ccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcc
Q 021510          140 TLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICS  219 (311)
Q Consensus       140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~  219 (311)
                                .+..+++|++|++++|+++.+     .+..+..+++|++|+++++ .+..+ +...+..+++|++|++++
T Consensus        71 ----------~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           71 ----------VFNKLTSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTN-QLQSL-PDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             ----------TTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             ----------hcCCCCCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCC-cCccc-CHhHhccCCcCCEEECCC
Confidence                      112368888899888877765     1233567888888888885 55555 434467788888888888


Q ss_pred             ccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccc
Q 021510          220 CEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLS  289 (311)
Q Consensus       220 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~  289 (311)
                      +. ++.+... .      +..+++|+.|++++++-.         ..++.|++|.+..+.--..+|..+.
T Consensus       134 N~-l~~~~~~-~------~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          134 NQ-LKSVPDG-V------FDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             SC-CSCCCTT-T------TTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             Cc-cceeCHH-H------hccCCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceeeccCc
Confidence            86 6655321 1      122778888888876321         2356677776666554455665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.98  E-value=2.3e-09  Score=95.15  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=77.2

Q ss_pred             CCccEEEEcCCCCCcccccchhhh-ccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccC
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTK-CLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCE  113 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  113 (311)
                      +++++|+++++ +++.+. +..+. .+++|++|+++++ .+..++.        ..+..+++|++|+++++ +++.++..
T Consensus        39 ~~l~~L~Ls~N-~l~~l~-~~~~~~~l~~L~~L~L~~N-~i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~  106 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHN-HLNFISS--------EAFVPVPNLRYLDLSSN-HLHTLDEF  106 (361)
T ss_dssp             TTCSEEECCSS-CCCEEC-TTSSSSCCTTCCEEECCSS-CCCEECT--------TTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred             CCCCEEECCCC-CCCccC-hhhhhhcccccCEEECCCC-cCCccCh--------hhccCCCCCCEEECCCC-cCCcCCHH
Confidence            45777777774 455542 22333 6777777777764 3444432        12345677777777775 34443321


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEec
Q 021510          114 VETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWH  193 (311)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~  193 (311)
                                                          .+..+++|++|++++|+++.+     .|..+..+++|+.|++++
T Consensus       107 ------------------------------------~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A          107 ------------------------------------LFSDLQALEVLLLYNNHIVVV-----DRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             ------------------------------------TTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS
T ss_pred             ------------------------------------HhCCCcCCCEEECCCCcccEE-----CHHHhCCcccCCEEECCC
Confidence                                                112356777777777766665     134456667777777777


Q ss_pred             CCCCccccchHHH---hccCCCcEEEEcccccccee
Q 021510          194 CHKLKYIFSASMI---RSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       194 c~~l~~~~~~~~~---~~l~~L~~L~l~~c~~l~~~  226 (311)
                      + .+..+ +...+   ..+++|+.|+++++. ++.+
T Consensus       146 N-~l~~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~l  178 (361)
T 2xot_A          146 N-QISRF-PVELIKDGNKLPKLMLLDLSSNK-LKKL  178 (361)
T ss_dssp             S-CCCSC-CGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred             C-cCCee-CHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence            4 44444 33323   456777777777765 5544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.96  E-value=3.5e-09  Score=87.23  Aligned_cols=150  Identities=16%  Similarity=0.167  Sum_probs=100.8

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      +.++..+. +++.++.     .-.++|++|+++++ .++.+. +..+..+++|++|+++++. +..+..        ..+
T Consensus        14 ~~v~c~~~-~l~~iP~-----~l~~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~-i~~~~~--------~~~   76 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPT-----NLPETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQ-ISELAP--------DAF   76 (220)
T ss_dssp             TEEECTTS-CCSSCCS-----SCCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSC-CCEECT--------TTT
T ss_pred             CEEEcCCC-CcCcCCC-----ccCcCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCc-CCCcCH--------HHh
Confidence            34555552 3555422     22368999999885 555542 3456778899999998863 444431        234


Q ss_pred             eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510           91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI  170 (311)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i  170 (311)
                      ..+++|++|+++++ .++.++...                                    +..+++|++|++++|+++.+
T Consensus        77 ~~l~~L~~L~Ls~N-~l~~l~~~~------------------------------------f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           77 QGLRSLNSLVLYGN-KITELPKSL------------------------------------FEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTT------------------------------------TTTCTTCCEEECCSSCCCCC
T ss_pred             hCCcCCCEEECCCC-cCCccCHhH------------------------------------ccCCCCCCEEECCCCCCCEe
Confidence            56788999999886 455444311                                    12368899999999987766


Q ss_pred             eccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          171 WHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       171 ~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                           .|..+..+++|+.|+++++ .++.+ +...+..+++|++|++++++
T Consensus       120 -----~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          120 -----RVDAFQDLHNLNLLSLYDN-KLQTI-AKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             -----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             -----CHHHcCCCCCCCEEECCCC-cCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence                 2345778889999999985 55655 33446778899999998876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.95  E-value=3.9e-09  Score=98.99  Aligned_cols=160  Identities=20%  Similarity=0.184  Sum_probs=105.0

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ...+++|++|+++++ +++.+    +  +.+++|++|+++++ .++.+  +. +..  +|++|+++++ .+..++     
T Consensus        76 ~~l~~~L~~L~Ls~N-~l~~i----p--~~l~~L~~L~Ls~N-~l~~i--p~-l~~--~L~~L~Ls~N-~l~~lp-----  136 (571)
T 3cvr_A           76 DNLPPQITVLEITQN-ALISL----P--ELPASLEYLDACDN-RLSTL--PE-LPA--SLKHLDVDNN-QLTMLP-----  136 (571)
T ss_dssp             SCCCTTCSEEECCSS-CCSCC----C--CCCTTCCEEECCSS-CCSCC--CC-CCT--TCCEEECCSS-CCSCCC-----
T ss_pred             HhHcCCCCEEECcCC-CCccc----c--cccCCCCEEEccCC-CCCCc--ch-hhc--CCCEEECCCC-cCCCCC-----
Confidence            334688999999996 46654    2  56899999999997 56665  23 333  9999999996 455554     


Q ss_pred             cccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS  163 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  163 (311)
                           .  .+++|+.|+++++ .++.++.                                        .+++|++|+++
T Consensus       137 -----~--~l~~L~~L~Ls~N-~l~~lp~----------------------------------------~l~~L~~L~Ls  168 (571)
T 3cvr_A          137 -----E--LPALLEYINADNN-QLTMLPE----------------------------------------LPTSLEVLSVR  168 (571)
T ss_dssp             -----C--CCTTCCEEECCSS-CCSCCCC----------------------------------------CCTTCCEEECC
T ss_pred             -----C--cCccccEEeCCCC-ccCcCCC----------------------------------------cCCCcCEEECC
Confidence                 1  5789999999987 4554332                                        14677888888


Q ss_pred             eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCC-------cEEEEccccccceecccccccCcC
Q 021510          164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQL-------QRLEICSCEDLQEIISENRTDQVI  236 (311)
Q Consensus       164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~  236 (311)
                      +|+++.+      |. +.  ++|+.|+++++ .++.+ |.  +..  +|       ++|++++|. ++.++.  ....  
T Consensus       169 ~N~L~~l------p~-l~--~~L~~L~Ls~N-~L~~l-p~--~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~--~l~~--  228 (571)
T 3cvr_A          169 NNQLTFL------PE-LP--ESLEALDVSTN-LLESL-PA--VPV--RNHHSEETEIFFRCRENR-ITHIPE--NILS--  228 (571)
T ss_dssp             SSCCSCC------CC-CC--TTCCEEECCSS-CCSSC-CC--CC----------CCEEEECCSSC-CCCCCG--GGGG--
T ss_pred             CCCCCCc------ch-hh--CCCCEEECcCC-CCCch-hh--HHH--hhhcccccceEEecCCCc-ceecCH--HHhc--
Confidence            8776665      33 33  67888888774 45544 32  111  45       778887775 665532  1111  


Q ss_pred             CcccCCccCeEecccCcc
Q 021510          237 PYFVFPQLTTLKLQDLPK  254 (311)
Q Consensus       237 ~~~~~~~L~~L~l~~c~~  254 (311)
                          +++|+.|++++++-
T Consensus       229 ----l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          229 ----LDPTCTIILEDNPL  242 (571)
T ss_dssp             ----SCTTEEEECCSSSC
T ss_pred             ----CCCCCEEEeeCCcC
Confidence                77778888777543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.95  E-value=5.4e-09  Score=86.65  Aligned_cols=150  Identities=16%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             ccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCC
Q 021510           37 LKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVET  116 (311)
Q Consensus        37 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  116 (311)
                      -+.++.++ ..+..+  |.  +-.++|++|+++++. +..+..        ..+..+++|++|+++++ .++.++..   
T Consensus        21 ~~~v~c~~-~~l~~i--p~--~~~~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~~~---   82 (229)
T 3e6j_A           21 GTTVDCRS-KRHASV--PA--GIPTNAQILYLHDNQ-ITKLEP--------GVFDSLINLKELYLGSN-QLGALPVG---   82 (229)
T ss_dssp             TTEEECTT-SCCSSC--CS--CCCTTCSEEECCSSC-CCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred             CCEeEccC-CCcCcc--CC--CCCCCCCEEEcCCCc-cCccCH--------HHhhCccCCcEEECCCC-CCCCcChh---
Confidence            34566554 344444  22  123678888887753 333321        12345677777777776 34433321   


Q ss_pred             CCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCC
Q 021510          117 PSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHK  196 (311)
Q Consensus       117 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~  196 (311)
                                                       .+..+++|+.|++++|+++.+.     +..+..+++|+.|+++++ .
T Consensus        83 ---------------------------------~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~~l~~L~~L~Ls~N-~  123 (229)
T 3e6j_A           83 ---------------------------------VFDSLTQLTVLDLGTNQLTVLP-----SAVFDRLVHLKELFMCCN-K  123 (229)
T ss_dssp             ---------------------------------TTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSS-C
T ss_pred             ---------------------------------hcccCCCcCEEECCCCcCCccC-----hhHhCcchhhCeEeccCC-c
Confidence                                             1123677788888877776551     223566777788877774 4


Q ss_pred             CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCc
Q 021510          197 LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       197 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  253 (311)
                      +..+ |.. +..+++|++|+++++. ++.+.. ..      +..+++|+.|++.+.+
T Consensus       124 l~~l-p~~-~~~l~~L~~L~L~~N~-l~~~~~-~~------~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          124 LTEL-PRG-IERLTHLTHLALDQNQ-LKSIPH-GA------FDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCSC-CTT-GGGCTTCSEEECCSSC-CCCCCT-TT------TTTCTTCCEEECTTSC
T ss_pred             cccc-Ccc-cccCCCCCEEECCCCc-CCccCH-HH------HhCCCCCCEEEeeCCC
Confidence            5544 444 4667777888877775 655432 11      1126777777776643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.93  E-value=3.1e-09  Score=94.34  Aligned_cols=163  Identities=15%  Similarity=0.052  Sum_probs=113.0

Q ss_pred             CccCCcccEEeeccccccccccccccccc-CCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVE-SFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGE   82 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~   82 (311)
                      ....+.+++|+|++. +++++..  ..+. .+++|++|+++++ +++.+. +..+..+++|++|+++++. +..++.   
T Consensus        35 ~~~~~~l~~L~Ls~N-~l~~l~~--~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~---  105 (361)
T 2xot_A           35 QSLPSYTALLDLSHN-NLSRLRA--EWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDE---  105 (361)
T ss_dssp             SSCCTTCSEEECCSS-CCCEECT--TSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECT---
T ss_pred             ccCCCCCCEEECCCC-CCCccCh--hhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCc-CCcCCH---
Confidence            344567999999995 5777532  2234 7899999999986 566652 3467889999999999964 665542   


Q ss_pred             ccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe
Q 021510           83 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI  162 (311)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  162 (311)
                           ..+..+++|++|+++++ .++.+...                                    .+..+++|+.|++
T Consensus       106 -----~~~~~l~~L~~L~L~~N-~i~~~~~~------------------------------------~~~~l~~L~~L~L  143 (361)
T 2xot_A          106 -----FLFSDLQALEVLLLYNN-HIVVVDRN------------------------------------AFEDMAQLQKLYL  143 (361)
T ss_dssp             -----TTTTTCTTCCEEECCSS-CCCEECTT------------------------------------TTTTCTTCCEEEC
T ss_pred             -----HHhCCCcCCCEEECCCC-cccEECHH------------------------------------HhCCcccCCEEEC
Confidence                 23456899999999987 45544321                                    1234799999999


Q ss_pred             eeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCC--CcEEEEcccc
Q 021510          163 SEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQ--LQRLEICSCE  221 (311)
Q Consensus       163 ~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c~  221 (311)
                      ++|+++.+.....  ..+..+++|+.|+++++ .++.+ +...+..++.  ++.|++.+++
T Consensus       144 ~~N~l~~l~~~~~--~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          144 SQNQISRFPVELI--KDGNKLPKLMLLDLSSN-KLKKL-PLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CSSCCCSCCGGGT--C----CTTCCEEECCSS-CCCCC-CHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCcCCeeCHHHh--cCcccCCcCCEEECCCC-CCCcc-CHHHhhhccHhhcceEEecCCC
Confidence            9998887621110  11156889999999994 67766 5555777776  4889999865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.92  E-value=1.7e-08  Score=83.11  Aligned_cols=109  Identities=17%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +++|++|++++|+++.+.     +..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.+... .  
T Consensus        56 l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~--  124 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIE-----EGAFEGASGVNEILLTSN-RLENV-QHKMFKGLESLKTLMLRSNR-ITCVGND-S--  124 (220)
T ss_dssp             CTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSS-CCCCC-CGGGGTTCSSCCEEECTTSC-CCCBCTT-S--
T ss_pred             CCCCCEEECCCCcCCEEC-----HHHhCCCCCCCEEECCCC-ccCcc-CHhHhcCCcCCCEEECCCCc-CCeECHh-H--
Confidence            445555555555444441     123444555555555553 33333 22224445555555555554 3333210 1  


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                          +..+++|+.|+++++ +++.+..... ..+++|++|++.+++
T Consensus       125 ----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          125 ----FIGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP  164 (220)
T ss_dssp             ----STTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred             ----cCCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence                111455555555542 3333322111 234555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.90  E-value=2.9e-11  Score=113.62  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +++|+.|++++|+++.+      |..++.+++|+.|+++++ .++.+ |  .+..+++|++|++++|.
T Consensus       462 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N-~l~~l-p--~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN-ALENV-D--GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             GTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSS-CCCCC-G--GGTTCSSCCEEECCSSC
T ss_pred             cccCcEeecCccccccc------chhhhcCCCCCEEECCCC-CCCCC-c--ccCCCCCCcEEECCCCC
Confidence            45555555555544433      334445555555555553 33333 3  24455555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.87  E-value=6.9e-10  Score=85.51  Aligned_cols=61  Identities=21%  Similarity=0.375  Sum_probs=37.7

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc--hHHHhccCCCcEEEEcc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS--ASMIRSLKQLQRLEICS  219 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~--~~~~~~l~~L~~L~l~~  219 (311)
                      +++|++|++++|.++.+..    +..+..+++|++|+++++ .+....+  ...+..+++|++|++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEECCCCcCCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            5667777777776554311    133556677888888775 4444422  13467788888887653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.86  E-value=6.8e-11  Score=108.23  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             ccCCcccEEeeccccccccccccc---ccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEcccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDR---LKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCS   72 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~   72 (311)
                      ..+++|++|+++++. +.......   .-....++|++|++++| .++....   +..+..+++|++|+++++.
T Consensus       110 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          110 RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            456889999999865 44311000   00123467888888887 3443211   3445567888888888765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.85  E-value=1.1e-09  Score=98.07  Aligned_cols=226  Identities=14%  Similarity=0.054  Sum_probs=123.8

Q ss_pred             ccCCcccEEeecccc--cccc-cccc----cccccCCCCccEEEEcCCCCCcccc---cchhhhccCcccEEEEcccccc
Q 021510            5 DAFPLLQSLILHNLI--NMER-LCID----RLKVESFNQLKNIEAYNCDKLSNIF---WFSTTKCLPRLERIAVINCSKM   74 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~--~l~~-l~~~----~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~~l   74 (311)
                      ..+++|++|+++++.  .+.. ++.+    ...+..+++|++|+++++. +....   .+..+..+++|++|++++|.. 
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-  134 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-  134 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence            357899999999873  2221 1000    1123678999999999974 44411   145667899999999999853 


Q ss_pred             ceecccccccccccceeee---------cccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccc--c
Q 021510           75 KEIFSIGEEVDNAIEKIEF---------AQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLD--I  143 (311)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~  143 (311)
                      ........    ...+..+         ++|++|+++++. ++..........   ......+..+.+..   +.+.  .
T Consensus       135 ~~~~~~~l----~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---l~~~~~L~~L~L~~---n~l~~~g  203 (386)
T 2ca6_A          135 GPQAGAKI----ARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT---FQSHRLLHTVKMVQ---NGIRPEG  203 (386)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHH---HHHCTTCCEEECCS---SCCCHHH
T ss_pred             CHHHHHHH----HHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHH---HHhCCCcCEEECcC---CCCCHhH
Confidence            21110000    0011223         789999998873 431111000000   00000111122221   1111  0


Q ss_pred             cccccc-ccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccch---HHH--hccCCCcEEEE
Q 021510          144 STLLFN-EKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSA---SMI--RSLKQLQRLEI  217 (311)
Q Consensus       144 ~~~~~~-~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~---~~~--~~l~~L~~L~l  217 (311)
                      ...+.. .+..+++|+.|++++|.++..... .+|..+..+++|++|++++|. +......   ..+  ..+++|++|++
T Consensus       204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             HHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEEC
Confidence            001112 345689999999999976321000 013446678899999999975 4433111   123  23899999999


Q ss_pred             ccccccce-----ecccccccCcCCcccCCccCeEecccCc
Q 021510          218 CSCEDLQE-----IISENRTDQVIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       218 ~~c~~l~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~c~  253 (311)
                      ++|. +..     ++.  ..     ...+++|+.|++++|+
T Consensus       282 ~~n~-i~~~g~~~l~~--~l-----~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          282 QYNE-IELDAVRTLKT--VI-----DEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CSSC-CBHHHHHHHHH--HH-----HHHCTTCCEEECTTSB
T ss_pred             cCCc-CCHHHHHHHHH--HH-----HhcCCCceEEEccCCc
Confidence            9997 655     221  11     0117999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=4.7e-08  Score=85.47  Aligned_cols=103  Identities=21%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCc-EEEEccccccceecccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQ-RLEICSCEDLQEIISENRT  232 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~  232 (311)
                      +++|+++++.+++++.+.     +..+..+++|+.+++.+.  ++.+ +...+..+++|+ ++.+.+  .++.+..    
T Consensus       225 ~~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n--i~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~~----  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN--LKTI-GQRVFSNCGRLAGTLELPA--SVTAIEF----  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT--CCEE-CTTTTTTCTTCCEEEEECT--TCCEECT----
T ss_pred             cCCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc--ccee-hHHHhhCChhccEEEEEcc--cceEEch----
Confidence            678888888888888872     234678888888888773  6666 445578888888 888887  3666632    


Q ss_pred             cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510          233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV  275 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i  275 (311)
                         .++..+++|+.+.+.+ ..++.++...+ ..+++|+.++.
T Consensus       291 ---~aF~~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly~  328 (329)
T 3sb4_A          291 ---GAFMGCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIYK  328 (329)
T ss_dssp             ---TTTTTCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEEC
T ss_pred             ---hhhhCCccCCEEEeCC-CccCccchhhh-cCCcchhhhcc
Confidence               1222378888888755 56777766542 36777777754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.82  E-value=2.3e-10  Score=101.60  Aligned_cols=223  Identities=14%  Similarity=0.018  Sum_probs=120.9

Q ss_pred             cCC-cccEEeecccccccccccccccccC-----CCCccEEEEcCCCCCcccccch---hhhcc-CcccEEEEccccccc
Q 021510            6 AFP-LLQSLILHNLINMERLCIDRLKVES-----FNQLKNIEAYNCDKLSNIFWFS---TTKCL-PRLERIAVINCSKMK   75 (311)
Q Consensus         6 ~l~-~L~~L~L~~~~~l~~l~~~~~~~~~-----l~~L~~L~l~~c~~l~~~~~~~---~~~~l-~~L~~L~i~~c~~l~   75 (311)
                      .++ +|++|+++++. +....  +..+..     +++|++|++++|. ++...+..   .+..+ ++|++|++++|. +.
T Consensus        48 ~~~~~L~~L~Ls~N~-l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~  122 (362)
T 3goz_A           48 NTPASVTSLNLSGNS-LGFKN--SDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FS  122 (362)
T ss_dssp             TCCTTCCEEECCSSC-GGGSC--HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred             hCCCceeEEECcCCC-CCHHH--HHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CC
Confidence            356 89999999974 55521  122233     3899999999975 55442211   23344 899999999975 33


Q ss_pred             eecccccccccccceee-ecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccC
Q 021510           76 EIFSIGEEVDNAIEKIE-FAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVAL  154 (311)
Q Consensus        76 ~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l  154 (311)
                      .......    ...+.. .++|++|+++++ .+++.....                                +...+...
T Consensus       123 ~~~~~~l----~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~--------------------------------l~~~l~~~  165 (362)
T 3goz_A          123 SKSSSEF----KQAFSNLPASITSLNLRGN-DLGIKSSDE--------------------------------LIQILAAI  165 (362)
T ss_dssp             GSCHHHH----HHHHTTSCTTCCEEECTTS-CGGGSCHHH--------------------------------HHHHHHTS
T ss_pred             cHHHHHH----HHHHHhCCCceeEEEccCC-cCCHHHHHH--------------------------------HHHHHhcC
Confidence            3221000    001112 258999999987 454321100                                00111223


Q ss_pred             C-CccEEEeeeeeceeeeccCCCCCCCCCC-CcccEEEEecCCCCcccc----chHHHhc-cCCCcEEEEccccccceec
Q 021510          155 P-NLEVLEISEINVDQIWHYNHLPVTFPRF-QNLTRLIVWHCHKLKYIF----SASMIRS-LKQLQRLEICSCEDLQEII  227 (311)
Q Consensus       155 ~-~L~~L~l~~~~l~~i~~~~~~p~~~~~l-~~L~~L~i~~c~~l~~~~----~~~~~~~-l~~L~~L~l~~c~~l~~~~  227 (311)
                      + +|++|++++|+++....... ...+..+ ++|+.|+++++ .+....    +.. +.. .++|++|++++|. +....
T Consensus       166 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-l~~~~  241 (362)
T 3goz_A          166 PANVNSLNLRGNNLASKNCAEL-AKFLASIPASVTSLDLSAN-LLGLKSYAELAYI-FSSIPNHVVSLNLCLNC-LHGPS  241 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHHSCTTCCEEECCSSC-CCCCC
T ss_pred             CccccEeeecCCCCchhhHHHH-HHHHHhCCCCCCEEECCCC-CCChhHHHHHHHH-HhcCCCCceEEECcCCC-CCcHH
Confidence            3 78888888886654311000 0112233 47888888885 344421    222 233 4578888888886 54432


Q ss_pred             ccccccCcCCcccCCccCeEecccCc-------ccccccCCCcccCCCcccEEEEecCC
Q 021510          228 SENRTDQVIPYFVFPQLTTLKLQDLP-------KLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       228 ~~~~~~~~~~~~~~~~L~~L~l~~c~-------~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      ...-   ......+++|+.|++++|.       .+..+....  ..+++|++|++++++
T Consensus       242 ~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          242 LENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred             HHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence            1000   0011126778888888764       122232222  356777778777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.80  E-value=6.9e-09  Score=79.81  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +++|++|++++|+++.+       ..+..+++|++|+++++ .+....+. .+..+++|++|++++|. ++.+...... 
T Consensus        41 l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~ls~N~-i~~~~~~~~~-  109 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDN-RVSGGLEV-LAEKCPNLTHLNLSGNK-IKDLSTIEPL-  109 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSS-CCCSCTHH-HHHHCTTCCEEECTTSC-CCSHHHHGGG-
T ss_pred             cCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCC-cccchHHH-HhhhCCCCCEEECCCCc-CCChHHHHHH-
Confidence            56666666666655544       23445666777777664 33332132 24556777777777765 5543211111 


Q ss_pred             CcCCcccCCccCeEecccCcccccccCC--CcccCCCcccEEEEe
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPG--MHSSEWPALEILLVY  276 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~L~~L~i~  276 (311)
                           ..+++|++|+++++ .++.++..  .....+++|++|+++
T Consensus       110 -----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          110 -----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence                 12667777777765 34444330  011345666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.77  E-value=1.1e-08  Score=81.02  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|+.|++++|.++.+       ..+..+++|+.|+++++ .+..+ +...+..+++|++|++++|. +..+...+.   
T Consensus        42 ~~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~---  108 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDP---  108 (176)
T ss_dssp             TCCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGG---
T ss_pred             CCCCEEECCCCCCCcc-------cccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHh---
Confidence            3666666666655554       23445566666666664 34444 33334556666666666665 444321111   


Q ss_pred             cCCcccCCccCeEecccCcccccccCC--CcccCCCcccEEEEecCCC
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLYPG--MHSSEWPALEILLVYGCDK  280 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~L~~L~i~~c~~  280 (311)
                         +..+++|+.|++++++ +..++..  .....+++|+.|++.++..
T Consensus       109 ---l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          109 ---LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ---GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ---hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence               1126666666666643 3333321  0013466666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.76  E-value=9.4e-09  Score=81.50  Aligned_cols=134  Identities=13%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510           31 VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        31 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                      +....+|++|+++++ .++.+  +......++|++|+++++. +..+.          .+..+++|++|+++++ .++.+
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~~   79 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE-IRKLD----------GFPLLRRLKTLLVNNN-RICRI   79 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC-CCEEC----------CCCCCSSCCEEECCSS-CCCEE
T ss_pred             cCCcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCC-CCccc----------ccccCCCCCEEECCCC-ccccc
Confidence            345677777777775 44444  2222233477777777753 33331          2345566666666665 34333


Q ss_pred             ccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEE
Q 021510          111 CCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLI  190 (311)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~  190 (311)
                      +..                                    .+..+++|++|++++|.+..+..    ...+..+++|+.|+
T Consensus        80 ~~~------------------------------------~~~~l~~L~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           80 GEG------------------------------------LDQALPDLTELILTNNSLVELGD----LDPLASLKSLTYLC  119 (176)
T ss_dssp             CSC------------------------------------HHHHCTTCCEEECCSCCCCCGGG----GGGGGGCTTCCEEE
T ss_pred             Ccc------------------------------------hhhcCCCCCEEECCCCcCCcchh----hHhhhcCCCCCEEE
Confidence            211                                    00225666666666665544311    01344555666666


Q ss_pred             EecCCCCccccchH---HHhccCCCcEEEEcccc
Q 021510          191 VWHCHKLKYIFSAS---MIRSLKQLQRLEICSCE  221 (311)
Q Consensus       191 i~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~  221 (311)
                      +++++ +... +..   .+..+++|+.|+++++.
T Consensus       120 l~~N~-i~~~-~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          120 ILRNP-VTNK-KHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSSG-GGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred             ecCCC-CCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence            66642 2322 221   24556666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.64  E-value=1.5e-08  Score=79.79  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhc----cCcccEEEEccccccceeccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKC----LPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      .|++|++++|. ++.  .+...+..+++|++|++++|..+++... ..+..    +++|++|++++|+.+..--.     
T Consensus        62 ~L~~LDLs~~~-Itd--~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-----  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMS--IGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI-----  132 (176)
T ss_dssp             CEEEEEEESCC-CCG--GGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH-----
T ss_pred             eEeEEeCcCCC-ccH--HHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH-----
Confidence            59999999987 666  3345567899999999999999988532 22333    35899999999998765211     


Q ss_pred             ccccceeeecccceEecCCCCCcccc
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                         ..+..+++|++|++++|+.+++.
T Consensus       133 ---~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 ---IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             ---HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             ---HHHhcCCCCCEEECCCCCCCCch
Confidence               12456899999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.63  E-value=5.1e-10  Score=105.17  Aligned_cols=107  Identities=19%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ..|+.|++++|+++.+      |. ++.+++|+.|+++++ .++.+ |.. +..+++|+.|+++++. ++.++   ....
T Consensus       441 ~~L~~L~Ls~n~l~~l------p~-~~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~~lp---~l~~  506 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVL------CH-LEQLLLVTHLDLSHN-RLRAL-PPA-LAALRCLEVLQASDNA-LENVD---GVAN  506 (567)
T ss_dssp             TTCSEEECTTSCCSSC------CC-GGGGTTCCEEECCSS-CCCCC-CGG-GGGCTTCCEEECCSSC-CCCCG---GGTT
T ss_pred             cCceEEEecCCCCCCC------cC-ccccccCcEeecCcc-ccccc-chh-hhcCCCCCEEECCCCC-CCCCc---ccCC
Confidence            4689999999988876      44 788999999999995 56656 654 7899999999999997 77653   2222


Q ss_pred             cCCcccCCccCeEecccCcccccc--cCCCcccCCCcccEEEEecCCCccccc
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCL--YPGMHSSEWPALEILLVYGCDKLKIFA  285 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l--~~~~~~~~~~~L~~L~i~~c~~l~~lp  285 (311)
                            +++|+.|+++++ +++.+  +...  ..+++|+.|++++++ +..+|
T Consensus       507 ------l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          507 ------LPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             ------CSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSS
T ss_pred             ------CCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCc
Confidence                  899999999985 66666  3333  578999999999875 44444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.62  E-value=1.9e-07  Score=75.03  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      +++++++. ++++++.     .-..+|++|+++++ +++.+.+...+..+++|++|+++++. +..+.+        ..+
T Consensus        11 ~~l~~s~~-~l~~ip~-----~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~   74 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPR-----DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------NAF   74 (192)
T ss_dssp             TEEECTTS-CCSSCCS-----CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------TTT
T ss_pred             CEEEcCCC-CcCcCcc-----CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH--------hHc
Confidence            45666663 3444421     12236777777764 45544222235666777777776642 333321        123


Q ss_pred             eeecccceEecCCC
Q 021510           91 IEFAQLRSLSLGNL  104 (311)
Q Consensus        91 ~~l~~L~~L~l~~~  104 (311)
                      ..+++|++|+++++
T Consensus        75 ~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           75 EGASHIQELQLGEN   88 (192)
T ss_dssp             TTCTTCCEEECCSC
T ss_pred             CCcccCCEEECCCC
Confidence            34566666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.60  E-value=1.7e-07  Score=75.47  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|++|++++|+++.+      |..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+...     
T Consensus        31 ~~l~~L~L~~n~i~~i------p~~~~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~-----   96 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLV------PKELSNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPR-----   96 (193)
T ss_dssp             TTCCEEECCSSCCCSC------CGGGGGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTT-----
T ss_pred             CCCCEEECCCCcCchh------HHHhhcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHH-----
Confidence            4566666666655544      334556666666666663 44444 22235566666666666665 5544321     


Q ss_pred             cCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          235 VIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                        .+..+++|+.|++++ ..++.++.+.. ..+++|+.|++.++|
T Consensus        97 --~f~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           97 --TFDGLKSLRLLSLHG-NDISVVPEGAF-NDLSALSHLAIGANP  137 (193)
T ss_dssp             --TTTTCTTCCEEECCS-SCCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred             --HhCCCCCCCEEECCC-CCCCeeChhhh-hcCccccEEEeCCCC
Confidence              111256666666665 34555544321 245666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.57  E-value=4.1e-07  Score=71.89  Aligned_cols=110  Identities=16%  Similarity=0.227  Sum_probs=78.6

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      .++|++|++++++++.+     .+..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.++.. .  
T Consensus        27 ~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~--   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNG-V--   95 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-T--
T ss_pred             CCCCcEEEeCCCcccEe-----CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCC-ccccCHH-H--
Confidence            46889999999877765     1234677889999999885 56655 44446788999999999886 6655321 1  


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCC
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDK  280 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~  280 (311)
                          +..+++|+.|+++++ .++.++... ...+++|++|++.+++-
T Consensus        96 ----~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           96 ----FDKLTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ----TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred             ----hhCCcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCCe
Confidence                122788999999885 667766543 13578899999988763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.55  E-value=2e-07  Score=75.01  Aligned_cols=33  Identities=9%  Similarity=0.065  Sum_probs=16.1

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEcc
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVIN   70 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~   70 (311)
                      ++|++|+++++ .++.+  +..+..+++|++|++++
T Consensus        31 ~~l~~L~L~~n-~i~~i--p~~~~~l~~L~~L~Ls~   63 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLV--PKELSNYKHLTLIDLSN   63 (193)
T ss_dssp             TTCCEEECCSS-CCCSC--CGGGGGCTTCCEEECCS
T ss_pred             CCCCEEECCCC-cCchh--HHHhhcccCCCEEECCC
Confidence            45555555553 33333  23444555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.52  E-value=5.4e-07  Score=72.31  Aligned_cols=108  Identities=21%  Similarity=0.306  Sum_probs=59.4

Q ss_pred             CCccEEEeeeeeceeeeccCCCCC-CCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPV-TFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      .+|++|++++|+++.+.     +. .+..+++|++|+++++ .++.+.+. .+..+++|++|+++++. ++.+... .  
T Consensus        29 ~~l~~L~l~~n~i~~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~--   97 (192)
T 1w8a_A           29 LHTTELLLNDNELGRIS-----SDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGENK-IKEISNK-M--   97 (192)
T ss_dssp             TTCSEEECCSCCCCSBC-----CSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSCC-CCEECSS-S--
T ss_pred             CCCCEEECCCCcCCccC-----CccccccCCCCCEEECCCC-CCCCcCHh-HcCCcccCCEEECCCCc-CCccCHH-H--
Confidence            36667777777665541     11 2456667777777664 44444232 25666777777777765 5555321 1  


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                          +..+++|+.|+++++ +++.+..... ..+++|++|++.+++
T Consensus        98 ----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           98 ----FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP  137 (192)
T ss_dssp             ----STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred             ----hcCCCCCCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCCC
Confidence                111666777777663 4444432221 356667777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.47  E-value=6.1e-07  Score=70.88  Aligned_cols=61  Identities=20%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +++|++|++++|+++.+     .+..+..+++|++|+++++ .++.+ +...+..+++|++|++++++
T Consensus        75 l~~L~~L~l~~N~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSL-----PNGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEEECCCCCcccc-----CHHHhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCC
Confidence            45666666666655544     1122445556666666653 34433 33334455566666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=1.6e-07  Score=73.92  Aligned_cols=89  Identities=19%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             CccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhcc----CCCcEEEEccccccceeccccc
Q 021510          156 NLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSL----KQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       156 ~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l----~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      +|++|++++|.++...-     ..+..+++|++|++++|..+++. ....+..+    ++|++|++++|.++++.-.. .
T Consensus        62 ~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~  134 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII-A  134 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-H
T ss_pred             eEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-H
Confidence            46666666664332211     12345556666666666655554 22223322    34666666666555432100 0


Q ss_pred             ccCcCCcccCCccCeEecccCccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRC  257 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~  257 (311)
                      .      ..+++|++|++++|+++++
T Consensus       135 L------~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 L------HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             G------GGCTTCCEEEEESCTTCCC
T ss_pred             H------hcCCCCCEEECCCCCCCCc
Confidence            0      1155555555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.42  E-value=8.9e-08  Score=92.62  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +++|+.|++++|+++.+      |..+..+++|++|+++++ .++.+ |.. +..+++|++|+++++.
T Consensus       269 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLTSL------PAELGSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GTTCCEEECTTSCCSSC------CSSGGGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSC
T ss_pred             CCCCCEEeCcCCcCCcc------ChhhcCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCc
Confidence            45555555555554433      444455555555555553 33433 333 4555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.38  E-value=5.9e-09  Score=84.33  Aligned_cols=59  Identities=20%  Similarity=0.202  Sum_probs=27.5

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      ++|++|++++|+++.+      | .+..+++|+.|+++++ .+..+.....+..+++|++|++++|+
T Consensus        93 ~~L~~L~L~~N~l~~l------~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           93 DTLEELWISYNQIASL------S-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHCSEEEEEEEECCCH------H-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CcCCEEECcCCcCCcC------C-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence            4555555555544443      1 2334445555555553 23322111234455555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=3.1e-06  Score=73.83  Aligned_cols=66  Identities=11%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCccc-EEEEecCCCCccccchHHHhccCCCcEEEEccccccceec
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLT-RLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEII  227 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  227 (311)
                      ..+.+|+++++.++ ++.+.     +..+..+++|+ .+.+.+  .++.+ +...+..+++|+++++.+.. ++.+.
T Consensus       247 ~~~~~L~~l~l~~n-i~~I~-----~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF~~c~~L~~l~l~~n~-i~~I~  313 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKTIG-----QRVFSNCGRLAGTLELPA--SVTAI-EFGAFMGCDNLRYVLATGDK-ITTLG  313 (329)
T ss_dssp             TTCTTCCEEECCTT-CCEEC-----TTTTTTCTTCCEEEEECT--TCCEE-CTTTTTTCTTEEEEEECSSC-CCEEC
T ss_pred             hCCCCCCEEECCcc-cceeh-----HHHhhCChhccEEEEEcc--cceEE-chhhhhCCccCCEEEeCCCc-cCccc
Confidence            44789999999987 77772     24578899999 999988  66666 44458899999999997765 77663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.26  E-value=6.1e-05  Score=67.50  Aligned_cols=216  Identities=10%  Similarity=0.083  Sum_probs=108.3

Q ss_pred             cccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccccc
Q 021510            9 LLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAI   88 (311)
Q Consensus         9 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~   88 (311)
                      +|+++.+.+  +++.+..  ..+.. .+|+.+.+.+  .++.+. ...+..|++|+++.+.+. .+..++...       
T Consensus       136 ~L~~i~l~~--~i~~I~~--~aF~~-~~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~n-~l~~I~~~a-------  199 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGD--MAFFN-STVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSKT-KITKLPAST-------  199 (401)
T ss_dssp             CCSEEECCT--TCCEECT--TTTTT-CCCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTTS-CCSEECTTT-------
T ss_pred             CccEEEeCC--CccEECH--HhcCC-CCceEEEeCC--CccEeh-HHHhhCcccCCeeecCCC-cceEechhh-------
Confidence            567777654  3555422  22233 3688888865  555542 345677888888888752 444444211       


Q ss_pred             ceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeece
Q 021510           89 EKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVD  168 (311)
Q Consensus        89 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  168 (311)
                        ....+|+.+.+.+  +++.+.........       .+..+.+...  ......    ..+.. .+|+.+.+.+ +++
T Consensus       200 --F~~~~L~~l~lp~--~l~~I~~~aF~~~~-------~L~~l~l~~~--l~~I~~----~aF~~-~~L~~i~lp~-~i~  260 (401)
T 4fdw_A          200 --FVYAGIEEVLLPV--TLKEIGSQAFLKTS-------QLKTIEIPEN--VSTIGQ----EAFRE-SGITTVKLPN-GVT  260 (401)
T ss_dssp             --TTTCCCSEEECCT--TCCEECTTTTTTCT-------TCCCEECCTT--CCEECT----TTTTT-CCCSEEEEET-TCC
T ss_pred             --EeecccCEEEeCC--chheehhhHhhCCC-------CCCEEecCCC--ccCccc----ccccc-CCccEEEeCC-Ccc
Confidence              1135566666643  23333332211100       0000111100  000000    01111 4677777733 344


Q ss_pred             eeeccCCCCCCCCCCCcccEEEEecCCC----CccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          169 QIWHYNHLPVTFPRFQNLTRLIVWHCHK----LKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       169 ~i~~~~~~p~~~~~l~~L~~L~i~~c~~----l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      .+.     ...+.++++|+.+.+.+...    ...+ +...+..+++|+++.+.+  .++.+..       .++..+++|
T Consensus       261 ~I~-----~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~-------~aF~~c~~L  325 (401)
T 4fdw_A          261 NIA-----SRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILGQ-------GLLGGNRKV  325 (401)
T ss_dssp             EEC-----TTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEECT-------TTTTTCCSC
T ss_pred             EEC-----hhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEhh-------hhhcCCCCc
Confidence            441     23466777888887766321    1123 333466777888877763  2555421       122226778


Q ss_pred             CeEecccCcccccccCCCcccCCCcccEEEEecC
Q 021510          245 TTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGC  278 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c  278 (311)
                      +.+.+.+  .++.+....+ ..| +|+.+++.+.
T Consensus       326 ~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          326 TQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGT  355 (401)
T ss_dssp             CEEEECT--TCCEECTTSS-SSS-CCCEEEECCS
T ss_pred             cEEEECc--cccEEcHHhC-CCC-CCCEEEEcCC
Confidence            8887753  3666655443 355 7888888664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.25  E-value=3e-08  Score=80.09  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +++|++|++++|.++.+      |..+..+++|+.|+++++ .+..+ +  .+..+++|++|++++|. ++.+...+...
T Consensus        69 l~~L~~L~l~~n~l~~l------~~~~~~~~~L~~L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N~-i~~~~~~~~l~  137 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKI------ENLDAVADTLEELWISYN-QIASL-S--GIEKLVNLRVLYMSNNK-ITNWGEIDKLA  137 (198)
T ss_dssp             HTTCCEEEEEEEEECSC------SSHHHHHHHCSEEEEEEE-ECCCH-H--HHHHHHHSSEEEESEEE-CCCHHHHHHHT
T ss_pred             CCCCCEEECCCCCcccc------cchhhcCCcCCEEECcCC-cCCcC-C--ccccCCCCCEEECCCCc-CCchhHHHHHh
Confidence            68889999999977755      444456689999999996 55555 3  36788999999999987 66543211111


Q ss_pred             CcCCcccCCccCeEecccCcccccccCC--------CcccCCCcccEEE
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPG--------MHSSEWPALEILL  274 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--------~~~~~~~~L~~L~  274 (311)
                            .+++|+.|++++++--...+..        .....+++|++|+
T Consensus       138 ------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          138 ------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ------TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ------cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                  2889999999987542222221        0113567777775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.22  E-value=6.3e-05  Score=67.41  Aligned_cols=237  Identities=12%  Similarity=0.084  Sum_probs=137.5

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      ..++++.+.+  +++.+..  ..+.. .+|+.+.+.+  +++.+.. ..+.+ .+|+++.+.+  .++.+..        
T Consensus       113 ~~l~~i~ip~--~i~~I~~--~aF~~-~~L~~i~l~~--~i~~I~~-~aF~~-~~L~~i~lp~--~l~~I~~--------  173 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPK--DAFRN-SQIAKVVLNE--GLKSIGD-MAFFN-STVQEIVFPS--TLEQLKE--------  173 (401)
T ss_dssp             SSCSEEECCT--TCCEECT--TTTTT-CCCSEEECCT--TCCEECT-TTTTT-CCCCEEECCT--TCCEECS--------
T ss_pred             CCccEEEECC--ccCEehH--hhccc-CCccEEEeCC--CccEECH-HhcCC-CCceEEEeCC--CccEehH--------
Confidence            4566666655  3455432  22333 3799999865  3665532 33444 4799999875  4555542        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccc----ccccccccccccccccccccCCCccEEEee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAM----YCSSEITLDISTLLFNEKVALPNLEVLEIS  163 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l----~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  163 (311)
                      ..+..+++|+.+++.+. +++.++.......        .+..+.+    ..+..          ..+..+++|+++.+.
T Consensus       174 ~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~--------~L~~l~lp~~l~~I~~----------~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKT-KITKLPASTFVYA--------GIEEVLLPVTLKEIGS----------QAFLKTSQLKTIEIP  234 (401)
T ss_dssp             STTTTCTTCCEEECTTS-CCSEECTTTTTTC--------CCSEEECCTTCCEECT----------TTTTTCTTCCCEECC
T ss_pred             HHhhCcccCCeeecCCC-cceEechhhEeec--------ccCEEEeCCchheehh----------hHhhCCCCCCEEecC
Confidence            23456789999999764 5666655433210        0111111    11111          123446788999887


Q ss_pred             eeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccc----ceecccccccCcCCcc
Q 021510          164 EINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDL----QEIISENRTDQVIPYF  239 (311)
Q Consensus       164 ~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~~~~  239 (311)
                      .+ ++.+..     ..+.+ .+|+.+.+.+  .++.+ +...+..+++|+++.+.+...-    ..+       ...++.
T Consensus       235 ~~-l~~I~~-----~aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-------~~~aF~  297 (401)
T 4fdw_A          235 EN-VSTIGQ-----EAFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMI-------HPYCLE  297 (401)
T ss_dssp             TT-CCEECT-----TTTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEE-------CTTTTT
T ss_pred             CC-ccCccc-----ccccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCccccCCcccEE-------CHHHhh
Confidence            74 555522     22344 6899999954  56666 4445788999999999876411    122       122333


Q ss_pred             cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCccccccccc
Q 021510          240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQL  304 (311)
Q Consensus       240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~~  304 (311)
                      .+++|+.+.+.+  .++.+....+ ..|++|+.+.+.+  +++.++.+-........+.+..+.+
T Consensus       298 ~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~  357 (401)
T 4fdw_A          298 GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTP  357 (401)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSC
T ss_pred             CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCC
Confidence            488999999874  5778876553 3688999998843  3555554433333444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.18  E-value=8.7e-07  Score=85.70  Aligned_cols=114  Identities=21%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             ccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccc
Q 021510          152 VALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENR  231 (311)
Q Consensus       152 ~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  231 (311)
                      ..+++|+.|++++|++..+      |..+..+++|++|+++++ .+..+ |.. +..+++|++|++++|. ++.++.  .
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l------~~~~~~l~~L~~L~Ls~N-~l~~l-p~~-~~~l~~L~~L~Ls~N~-l~~lp~--~  288 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNI------SANIFKYDFLTRLYLNGN-SLTEL-PAE-IKNLSNLRVLDLSHNR-LTSLPA--E  288 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCC------CGGGGGCCSCSCCBCTTS-CCSCC-CGG-GGGGTTCCEEECTTSC-CSSCCS--S
T ss_pred             ccCCCCcEEECCCCCCCCC------ChhhcCCCCCCEEEeeCC-cCccc-Chh-hhCCCCCCEEeCcCCc-CCccCh--h
Confidence            4478899999999987766      555668889999999985 55555 654 6889999999999997 775532  2


Q ss_pred             ccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510          232 TDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       232 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                      ..      .+++|+.|+++++ .++.++...  ..+++|++|++++++--..+|.
T Consensus       289 ~~------~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          289 LG------SCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GG------GGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSCCCSHHHH
T ss_pred             hc------CCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCccCCCChH
Confidence            22      2889999999986 677887664  5789999999998875444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.17  E-value=5.6e-06  Score=64.95  Aligned_cols=83  Identities=24%  Similarity=0.325  Sum_probs=54.5

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|+.|++++|+++.+     .|..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.+... .   
T Consensus        30 ~~l~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~-~---   97 (170)
T 3g39_A           30 TTTQVLYLYDNQITKL-----EPGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRG-A---   97 (170)
T ss_dssp             TTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-T---
T ss_pred             CCCcEEEcCCCcCCcc-----ChhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHH-H---
Confidence            6778888888877765     2344667778888888874 56655 44445677888888888775 6655321 1   


Q ss_pred             cCCcccCCccCeEecccC
Q 021510          235 VIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c  252 (311)
                         +..+++|+.|++++.
T Consensus        98 ---~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           98 ---FDNLKSLTHIWLLNN  112 (170)
T ss_dssp             ---TTTCTTCCEEECCSS
T ss_pred             ---hcCCCCCCEEEeCCC
Confidence               112677777777764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.15  E-value=5.2e-06  Score=65.14  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=77.6

Q ss_pred             CccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCc
Q 021510          156 NLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQV  235 (311)
Q Consensus       156 ~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  235 (311)
                      ..+.+++++++++.+      |..+  .++|+.|+++++ .++.+.+ ..+..+++|++|+++++. ++.+...  .   
T Consensus        10 ~~~~l~~s~n~l~~i------p~~~--~~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~--~---   73 (170)
T 3g39_A           10 SGTTVDCSGKSLASV------PTGI--PTTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNNQ-LTVLPAG--V---   73 (170)
T ss_dssp             ETTEEECTTSCCSSC------CSCC--CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTT--T---
T ss_pred             CCCEEEeCCCCcCcc------CccC--CCCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCCC-cCccChh--h---
Confidence            347888888888876      4433  378999999994 6666634 347889999999999997 7766431  1   


Q ss_pred             CCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          236 IPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       236 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                        +..+++|+.|++++ .+++.++.+.. ..+++|++|++.+++
T Consensus        74 --f~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           74 --FDKLTQLTQLSLND-NQLKSIPRGAF-DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             --TTTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             --ccCCCCCCEEECCC-CccCEeCHHHh-cCCCCCCEEEeCCCC
Confidence              12289999999998 47788776532 478999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.13  E-value=7.8e-06  Score=64.44  Aligned_cols=84  Identities=23%  Similarity=0.318  Sum_probs=57.0

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccC
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQ  234 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  234 (311)
                      ++|++|++++|+++.+     .|..+..+++|++|+++++ .++.+ +...+..+++|++|+++++. ++.++.  .   
T Consensus        33 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~-l~~l~~--~---   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKL-----EPGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDNH-LKSIPR--G---   99 (174)
T ss_dssp             TTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT--T---
T ss_pred             CCCcEEEeCCCCcccc-----CHHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCCc-cceeCH--H---
Confidence            6788888888877765     2345677888888888884 66655 44445678888888888876 665532  1   


Q ss_pred             cCCcccCCccCeEecccCc
Q 021510          235 VIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       235 ~~~~~~~~~L~~L~l~~c~  253 (311)
                        .+..+++|+.|++.+++
T Consensus       100 --~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          100 --AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             --TTTTCTTCSEEECCSSC
T ss_pred             --HhccccCCCEEEeCCCC
Confidence              11227788888887643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.12  E-value=6.6e-06  Score=64.86  Aligned_cols=102  Identities=22%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCC
Q 021510          158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIP  237 (311)
Q Consensus       158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  237 (311)
                      +.+++++++++.+      |..+.  ++|+.|+++++ .++.+.+ ..+..+++|++|+++++. ++.++..  .     
T Consensus        15 ~~l~~~~n~l~~i------P~~~~--~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~~~--~-----   76 (174)
T 2r9u_A           15 TLVNCQNIRLASV------PAGIP--TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNK-LTAIPTG--V-----   76 (174)
T ss_dssp             SEEECCSSCCSSC------CSCCC--TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT--T-----
T ss_pred             cEEEeCCCCCCcc------CCCcC--CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCC-CCccChh--H-----
Confidence            6788888888776      44433  79999999995 5666634 447889999999999996 7776431  1     


Q ss_pred             cccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          238 YFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       238 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      +..+++|+.|++++ .+++.++.+.. ..+++|++|++.+++
T Consensus        77 ~~~l~~L~~L~L~~-N~l~~l~~~~~-~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           77 FDKLTQLTQLDLND-NHLKSIPRGAF-DNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCSEEECCSSC
T ss_pred             hCCcchhhEEECCC-CccceeCHHHh-ccccCCCEEEeCCCC
Confidence            12289999999998 57777776532 468999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=9.4e-06  Score=71.73  Aligned_cols=66  Identities=17%  Similarity=0.133  Sum_probs=32.7

Q ss_pred             CCCcccEEEEecCCCCccccchHHH--hccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccC
Q 021510          182 RFQNLTRLIVWHCHKLKYIFSASMI--RSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       182 ~l~~L~~L~i~~c~~l~~~~~~~~~--~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  252 (311)
                      .+++|+.|.+.+|...... ...++  +.+++|++|+++.+. +.+.-... ..  .....+++|+.|++++|
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~-L~--~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGV-LTDEGARL-LL--DHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSC-CBHHHHHH-HH--TTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCC-CChHHHHH-HH--hhcccCCcceEEECCCC
Confidence            4667777777776433211 11111  246777777776654 44310000 00  00012667777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.89  E-value=2.4e-05  Score=68.51  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             ccCCCccEEEeee-eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          152 VALPNLEVLEISE-INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       152 ~~l~~L~~L~l~~-~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      ..+.+|++|++++ |+++.+.     +..+..+++|+.|+++++ .++.+ +...+..+++|++|+++++. ++.+
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~   95 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFNA-LESL   95 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred             CCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCCc-ccee
Confidence            3456677777775 6666661     233566777777777774 55555 33335667777777777765 5554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.82  E-value=2.8e-07  Score=81.96  Aligned_cols=93  Identities=17%  Similarity=0.036  Sum_probs=42.8

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceecccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIISEN  230 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~  230 (311)
                      .++|++|++++|.++...... ++..+...++|++|++++|. +.+...   ...+...++|++|++++|. ++......
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~  230 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALA  230 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHH
Confidence            356677777776544321000 01122344567777777653 443210   1123455667777777765 43221000


Q ss_pred             cccCcCCcccCCccCeEecccC
Q 021510          231 RTDQVIPYFVFPQLTTLKLQDL  252 (311)
Q Consensus       231 ~~~~~~~~~~~~~L~~L~l~~c  252 (311)
                      -   .......++|++|+++++
T Consensus       231 l---~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          231 L---ARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             H---HHHHHHCSSCCEEECTTS
T ss_pred             H---HHHHHhCCCCCEEeccCC
Confidence            0   000011466777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.75  E-value=5.9e-05  Score=65.98  Aligned_cols=83  Identities=13%  Similarity=0.119  Sum_probs=46.0

Q ss_pred             EeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceee
Q 021510           13 LILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIE   92 (311)
Q Consensus        13 L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~   92 (311)
                      ++.++..+++.+   +. +..+++|++|+++++..++.+. +..+..+++|++|+++++ .+..++.        ..+..
T Consensus        13 v~~~~~n~l~~i---p~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~--------~~~~~   78 (347)
T 2ifg_A           13 LRCTRDGALDSL---HH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAP--------DAFHF   78 (347)
T ss_dssp             EECCSSCCCTTT---TT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECT--------TGGGS
T ss_pred             EEcCCCCCCCcc---CC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCH--------HHhcC
Confidence            444443245554   22 5666677777776545666552 244566777777777664 4544442        12345


Q ss_pred             ecccceEecCCCCCcccc
Q 021510           93 FAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        93 l~~L~~L~l~~~~~l~~l  110 (311)
                      +++|++|+|+++ +++.+
T Consensus        79 l~~L~~L~l~~N-~l~~~   95 (347)
T 2ifg_A           79 TPRLSRLNLSFN-ALESL   95 (347)
T ss_dssp             CSCCCEEECCSS-CCSCC
T ss_pred             CcCCCEEeCCCC-cccee
Confidence            666666666665 44443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.75  E-value=1e-05  Score=71.47  Aligned_cols=175  Identities=17%  Similarity=0.161  Sum_probs=96.8

Q ss_pred             ccCCcccEEeecccccccc--c-ccc----cccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccccccee
Q 021510            5 DAFPLLQSLILHNLINMER--L-CID----RLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEI   77 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~--l-~~~----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~   77 (311)
                      ..|++|+.|.+.+.. .++  + +..    ...+..+++|+.|+++++..+. +  +. + .+++|++|.+..|..-...
T Consensus       136 ~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l--~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          136 EKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I--GK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C--CS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             hhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e--cc-c-cCCCCcEEEEecCCCChHH
Confidence            468999999997642 111  0 000    1223567999999999874332 2  22 2 3889999999876422111


Q ss_pred             cccccccccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCc
Q 021510           78 FSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNL  157 (311)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L  157 (311)
                      ..       ......+|+|++|+++...+...-......  .              .           .. .....+++|
T Consensus       210 l~-------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~--l--------------~-----------~~-l~~~~~p~L  254 (362)
T 2ra8_A          210 VE-------DILGSDLPNLEKLVLYVGVEDYGFDGDMNV--F--------------R-----------PL-FSKDRFPNL  254 (362)
T ss_dssp             HH-------HHHHSBCTTCCEEEEECBCGGGTCCSCGGG--T--------------G-----------GG-SCTTTCTTC
T ss_pred             HH-------HHHHccCCCCcEEEEeccccccccchhHHH--H--------------H-----------HH-HhcCCCCCc
Confidence            00       001136899999998532211000000000  0              0           00 001237999


Q ss_pred             cEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchH---HHhccCCCcEEEEccccccc
Q 021510          158 EVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSAS---MIRSLKQLQRLEICSCEDLQ  224 (311)
Q Consensus       158 ~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~---~~~~l~~L~~L~l~~c~~l~  224 (311)
                      +.|++.+|.+....... +.. ...+++|+.|+++. +.+.+.....   .+..+++|++|+++.|. +.
T Consensus       255 r~L~L~~~~i~~~~~~~-la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          255 KWLGIVDAEEQNVVVEM-FLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             CEEEEESCTTHHHHHHH-HHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             CEEeCCCCCCchHHHHH-HHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence            99999998544210000 000 12567999999976 4566532111   13568999999999886 54

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.53  E-value=3.4e-06  Score=74.97  Aligned_cols=13  Identities=23%  Similarity=0.179  Sum_probs=7.1

Q ss_pred             cCCCcEEEEcccc
Q 021510          209 LKQLQRLEICSCE  221 (311)
Q Consensus       209 l~~L~~L~l~~c~  221 (311)
                      .++|++|++++|+
T Consensus       238 ~~~L~~L~Ls~N~  250 (372)
T 3un9_A          238 HPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCEEECTTSS
T ss_pred             CCCCCEEeccCCC
Confidence            4555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.06  E-value=0.023  Score=50.36  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510          180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY  259 (311)
Q Consensus       180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  259 (311)
                      +..+.+|+.+.+.+  .++.+ +...+.++.+|+++++.+.  ++.+-.       .++..+.+|+++.+..  .++.+.
T Consensus       293 F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~  358 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPYL--VEEIGK-------RSFRGCTSLSNINFPL--SLRKIG  358 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCTTCCEECCCT--TCCEEC
T ss_pred             cccccccccccccc--cccee-chhhhcCCCCCCEEEeCCc--ccEEhH-------HhccCCCCCCEEEECc--cccEeh
Confidence            44566777776654  34444 3333566777777777532  444411       1222367777777753  366665


Q ss_pred             CCCcccCCCcccEEEEe
Q 021510          260 PGMHSSEWPALEILLVY  276 (311)
Q Consensus       260 ~~~~~~~~~~L~~L~i~  276 (311)
                      ...+ ..|++|+++++.
T Consensus       359 ~~aF-~~C~~L~~i~lp  374 (394)
T 4fs7_A          359 ANAF-QGCINLKKVELP  374 (394)
T ss_dssp             TTTB-TTCTTCCEEEEE
T ss_pred             HHHh-hCCCCCCEEEEC
Confidence            5442 367777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.57  E-value=0.00094  Score=56.12  Aligned_cols=63  Identities=24%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccC--cccEEEEccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLP--RLERIAVINCSK   73 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~i~~c~~   73 (311)
                      .+|+|++|+|++. ++..+...+..++.+++|++|+++++ +++.+   ..+..+.  +|++|.+.+++-
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE---RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG---GGGGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc---hhhhhcccCCcceEEccCCcC
Confidence            3567777777764 35443211222346677777777663 44444   1222233  677777766653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.52  E-value=0.072  Score=47.12  Aligned_cols=33  Identities=9%  Similarity=0.019  Sum_probs=19.6

Q ss_pred             cCCccCeEecccCcccccccCCCcccCCCcccEEEE
Q 021510          240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLV  275 (311)
Q Consensus       240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i  275 (311)
                      .+.+|+++.+.+  .++.+....+ ..|.+|+.+.+
T Consensus       318 ~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~l  350 (394)
T 4fs7_A          318 SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINF  350 (394)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECC
T ss_pred             CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEE
Confidence            367777777753  3555554432 35677777766

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.44  E-value=0.25  Score=43.60  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510          180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY  259 (311)
Q Consensus       180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  259 (311)
                      +.++.+|+.+.+..  .+..+ +...+..+.+|+++.+.+.  ++.+-       ..++..+.+|+++.|-+  .++.+.
T Consensus       284 F~~c~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~-------~~aF~~C~~L~~i~ip~--sv~~I~  349 (394)
T 4gt6_A          284 FMNCPALQDIEFSS--RITEL-PESVFAGCISLKSIDIPEG--ITQIL-------DDAFAGCEQLERIAIPS--SVTKIP  349 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCTT--CCEEC-------TTTTTTCTTCCEEEECT--TCCBCC
T ss_pred             cccccccccccCCC--ccccc-CceeecCCCCcCEEEeCCc--ccEeh-------HhHhhCCCCCCEEEECc--ccCEEh
Confidence            44556666665542  34444 3334566667777766532  44431       12223367777777743  355665


Q ss_pred             CCCcccCCCcccEEEEec
Q 021510          260 PGMHSSEWPALEILLVYG  277 (311)
Q Consensus       260 ~~~~~~~~~~L~~L~i~~  277 (311)
                      ...+ ..|.+|+.+++.+
T Consensus       350 ~~aF-~~C~~L~~i~~~~  366 (394)
T 4gt6_A          350 ESAF-SNCTALNNIEYSG  366 (394)
T ss_dssp             GGGG-TTCTTCCEEEESS
T ss_pred             HhHh-hCCCCCCEEEECC
Confidence            4432 3678888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.87  E-value=0.0018  Score=54.36  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      .+++|+.|++++|+++.+..   +|..+..+++|+.|++++ +.+..+.....+..+ +|++|++.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc
Confidence            46778888888886665411   112233566777777766 344433121112222 67777777666

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.49  E-value=0.0007  Score=53.62  Aligned_cols=66  Identities=14%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE--ecCCCCccccc---hHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV--WHCHKLKYIFS---ASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~  221 (311)
                      .++|++|++++|.+....... +...+...++|++|++  .+ +.+.....   ...+...+.|++|++++|.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~-l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILA-LVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHH-HHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCcCEEECcCCcCCHHHHHH-HHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            356666666666443210000 0122334456777777  33 33433211   1224445677777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.02  E-value=0.17  Score=44.36  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEIC  218 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~  218 (311)
                      .+.+|+++.+.++.++.+..     ..+.++.+|+.+.+.+  .++.+ +...+.++++|+++.+.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~-----~aF~~c~~L~~i~lp~--~l~~I-~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEP-----RVFMDCVKLSSVTLPT--ALKTI-QVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECT-----TTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccceehh-----hhhcCCCCCCEEEcCc--cccEE-HHHHhhCCCCCCEEEEC
Confidence            36778888887766666622     3456777888887754  34544 33346667777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.25  E-value=0.0014  Score=51.86  Aligned_cols=125  Identities=10%  Similarity=0.022  Sum_probs=68.4

Q ss_pred             ccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCc
Q 021510           31 VESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEV  107 (311)
Q Consensus        31 ~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  107 (311)
                      +...+.|++|++++|..+.....   ...+...++|++|++++|. +..-....    ....+...++|++|+++++ .+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~----l~~~L~~n~~L~~L~L~~N-~i  105 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFA----LAEMLKVNNTLKSLNVESN-FI  105 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHH----HHHHHHHCSSCCEEECCSS-CC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHH----HHHHHHhCCCcCEEECcCC-cC
Confidence            34568899999988755554211   2334456789999998874 22100000    0012234467888988887 34


Q ss_pred             cccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEe--eeeeceeeeccCCCCCCCCCCCc
Q 021510          108 TSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEI--SEINVDQIWHYNHLPVTFPRFQN  185 (311)
Q Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~l~~i~~~~~~p~~~~~l~~  185 (311)
                      ++...                                ..+...+...++|++|++  ++|.+....... +...+...++
T Consensus       106 ~~~g~--------------------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~-l~~~L~~n~~  152 (185)
T 1io0_A          106 SGSGI--------------------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEME-IANMLEKNTT  152 (185)
T ss_dssp             CHHHH--------------------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH-HHHHHHHCSS
T ss_pred             CHHHH--------------------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHH-HHHHHHhCCC
Confidence            43211                                011122334678999999  667554321000 0112334468


Q ss_pred             ccEEEEecC
Q 021510          186 LTRLIVWHC  194 (311)
Q Consensus       186 L~~L~i~~c  194 (311)
                      |++|+++++
T Consensus       153 L~~L~L~~n  161 (185)
T 1io0_A          153 LLKFGYHFT  161 (185)
T ss_dssp             CCEEECCCS
T ss_pred             cCEEeccCC
Confidence            999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.26  E-value=0.43  Score=42.00  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=38.5

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +.+|+.+.+.. .++.+..     ..+..+.+|+.+.|.+  +++.+ +...+..+.+|+++.+-+.  ++.+-.     
T Consensus       287 c~~L~~i~l~~-~i~~I~~-----~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~C~~L~~i~ip~s--v~~I~~-----  350 (394)
T 4gt6_A          287 CPALQDIEFSS-RITELPE-----SVFAGCISLKSIDIPE--GITQI-LDDAFAGCEQLERIAIPSS--VTKIPE-----  350 (394)
T ss_dssp             CTTCCEEECCT-TCCEECT-----TTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEECTT--CCBCCG-----
T ss_pred             ccccccccCCC-cccccCc-----eeecCCCCcCEEEeCC--cccEe-hHhHhhCCCCCCEEEECcc--cCEEhH-----
Confidence            45555555542 3334411     2345566666666653  34444 2233556666666666432  333311     


Q ss_pred             CcCCcccCCccCeEeccc
Q 021510          234 QVIPYFVFPQLTTLKLQD  251 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~  251 (311)
                        .++..+++|+.+.+.+
T Consensus       351 --~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          351 --SAFSNCTALNNIEYSG  366 (394)
T ss_dssp             --GGGTTCTTCCEEEESS
T ss_pred             --hHhhCCCCCCEEEECC
Confidence              1122266666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.25  E-value=2  Score=37.31  Aligned_cols=82  Identities=12%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             CCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCccccccc
Q 021510          180 FPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLY  259 (311)
Q Consensus       180 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  259 (311)
                      +.++.+|+.+.+..  .+..+ +...+..+++|+++.+.+.. ++.+..       .++..+.+|+++.+.+  .++.+.
T Consensus       259 F~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~  325 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNSA-IETLEP-------RVFMDCVKLSSVTLPT--ALKTIQ  325 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCTT-CCEECT-------TTTTTCTTCCEEECCT--TCCEEC
T ss_pred             cceeehhccccccc--cceec-cccccccccccccccccccc-cceehh-------hhhcCCCCCCEEEcCc--cccEEH
Confidence            34455666665543  33333 33335566667777665443 444411       1222366777777642  355554


Q ss_pred             CCCcccCCCcccEEEE
Q 021510          260 PGMHSSEWPALEILLV  275 (311)
Q Consensus       260 ~~~~~~~~~~L~~L~i  275 (311)
                      ...+ ..|.+|+.+.+
T Consensus       326 ~~aF-~~C~~L~~i~i  340 (379)
T 4h09_A          326 VYAF-KNCKALSTISY  340 (379)
T ss_dssp             TTTT-TTCTTCCCCCC
T ss_pred             HHHh-hCCCCCCEEEE
Confidence            4332 35666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=80.29  E-value=1.2  Score=32.43  Aligned_cols=35  Identities=14%  Similarity=0.281  Sum_probs=19.1

Q ss_pred             cccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          185 NLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       185 ~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +|+.|++++ +.++.+ +...+..+++|++|++.+++
T Consensus        32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence            456666655 345544 33345556666666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.35
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.21
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.93
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	88.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.41

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=9.2e-13  Score=112.19  Aligned_cols=230  Identities=17%  Similarity=0.146  Sum_probs=117.4

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      .+++++|+|+++ +++++..  ..+..+++|++|+++++... .+ ++..+..+++|++|+++++ .++.++.       
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~--~~f~~l~~L~~L~l~~n~~~-~i-~~~~f~~l~~L~~L~l~~n-~l~~l~~-------   96 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKD--GDFKNLKNLHTLILINNKIS-KI-SPGAFAPLVKLERLYLSKN-QLKELPE-------   96 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCT--TTTTTCTTCCEEECCSSCCC-CB-CTTTTTTCTTCCEEECCSS-CCSBCCS-------
T ss_pred             CCCCCEEECcCC-cCCCcCh--hHhhcccccccccccccccc-cc-chhhhhCCCccCEecccCC-ccCcCcc-------
Confidence            366777777775 4665421  23566777777777776433 32 1344666777777777775 3444432       


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                          ..++.++.|.+.+. .+..++........       ....+....   ............+..+++|+.+++.+|+
T Consensus        97 ----~~~~~l~~L~~~~n-~l~~l~~~~~~~~~-------~~~~l~~~~---n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          97 ----KMPKTLQELRVHEN-EITKVRKSVFNGLN-------QMIVVELGT---NPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             ----SCCTTCCEEECCSS-CCCBBCHHHHTTCT-------TCCEEECCS---SCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ----chhhhhhhhhcccc-chhhhhhhhhhccc-------ccccccccc---ccccccCCCccccccccccCccccccCC
Confidence                12345555555543 22222211000000       000000000   0000000011123446677777777776


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      +..+      |..  .+++|+.|++.++...... + ..+..++.+++|+++++. ++.+... .      +..+++|++
T Consensus       162 l~~l------~~~--~~~~L~~L~l~~n~~~~~~-~-~~~~~~~~l~~L~~s~n~-l~~~~~~-~------~~~l~~L~~  223 (305)
T d1xkua_         162 ITTI------PQG--LPPSLTELHLDGNKITKVD-A-ASLKGLNNLAKLGLSFNS-ISAVDNG-S------LANTPHLRE  223 (305)
T ss_dssp             CCSC------CSS--CCTTCSEEECTTSCCCEEC-T-GGGTTCTTCCEEECCSSC-CCEECTT-T------GGGSTTCCE
T ss_pred             cccc------Ccc--cCCccCEEECCCCcCCCCC-h-hHhhcccccccccccccc-ccccccc-c------cccccccee
Confidence            5544      221  3457777777765443322 3 235666777777777765 5555321 1      112677777


Q ss_pred             EecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510          247 LKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       247 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                      |+++++ ++++++.+.  ..+++|++|+++++ +++.++.
T Consensus       224 L~L~~N-~L~~lp~~l--~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         224 LHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             EECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCCCT
T ss_pred             eecccc-ccccccccc--ccccCCCEEECCCC-ccCccCh
Confidence            777775 566665543  45677777777775 4666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.3e-13  Score=111.61  Aligned_cols=198  Identities=17%  Similarity=0.158  Sum_probs=139.1

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      ...+.+++-++ .+++.++.+     -.+++++|+++++ +++.+ ++..+..+++|++|+++++ .++.++.       
T Consensus         9 ~~~~~~v~C~~-~~L~~iP~~-----lp~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l~~-------   72 (266)
T d1p9ag_           9 VASHLEVNCDK-RNLTALPPD-----LPKDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQV-------   72 (266)
T ss_dssp             STTCCEEECTT-SCCSSCCSC-----CCTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEEC-------
T ss_pred             cCCCeEEEccC-CCCCeeCcC-----cCcCCCEEECcCC-cCCCc-CHHHhhccccccccccccc-ccccccc-------
Confidence            34555555555 346665221     1268999999985 56665 3456788999999999996 5666652       


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                         ...+++|++|+++++ +++..+.                                     ....+++|+.|+++++.
T Consensus        73 ---~~~l~~L~~L~Ls~N-~l~~~~~-------------------------------------~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          73 ---DGTLPVLGTLDLSHN-QLQSLPL-------------------------------------LGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             ---CSCCTTCCEEECCSS-CCSSCCC-------------------------------------CTTTCTTCCEEECCSSC
T ss_pred             ---ccccccccccccccc-ccccccc-------------------------------------ccccccccccccccccc
Confidence               346799999999887 4443221                                     11337889999999986


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      +..+.     +..+..+.+++.|++.++ .+..+ +...+..++.++.++++++. ++.+... .      +..+++|++
T Consensus       112 ~~~~~-----~~~~~~l~~l~~L~l~~n-~l~~l-~~~~~~~l~~l~~l~l~~N~-l~~~~~~-~------~~~l~~L~~  176 (266)
T d1p9ag_         112 LTSLP-----LGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANNN-LTELPAG-L------LNGLENLDT  176 (266)
T ss_dssp             CCCCC-----SSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CSCCCTT-T------TTTCTTCCE
T ss_pred             cceee-----cccccccccccccccccc-cccee-ccccccccccchhccccccc-ccccCcc-c------cccccccce
Confidence            66552     234567788999999885 55555 44556778999999999986 7665421 1      222889999


Q ss_pred             EecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          247 LKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       247 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      |+++++ ++++++.+.  ..+++|+.|++.+.|
T Consensus       177 L~Ls~N-~L~~lp~~~--~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         177 LLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECCSS-CCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred             eecccC-CCcccChhH--CCCCCCCEEEecCCC
Confidence            999985 588888766  568889999999865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-15  Score=127.07  Aligned_cols=40  Identities=28%  Similarity=0.275  Sum_probs=17.8

Q ss_pred             CCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccc
Q 021510          183 FQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDL  223 (311)
Q Consensus       183 l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  223 (311)
                      +++|++|++++|..+++. ....+..+++|++|++++|..+
T Consensus       174 ~~~L~~L~L~~~~~itd~-~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             CTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTC
T ss_pred             cccccccccccccCCCch-hhhhhcccCcCCEEECCCCCCC
Confidence            344555555554444433 1122334445555555555433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.6e-15  Score=125.11  Aligned_cols=190  Identities=15%  Similarity=0.129  Sum_probs=127.4

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      ....+|++|++++|. +........+..+++|++|.+++|..-....         ..+..+++|++|++++|..+++..
T Consensus        43 ~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~---------~~l~~~~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          43 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV---------NTLAKNSNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHH---------HHHTTCTTCSEEECTTCBSCCHHH
T ss_pred             ccCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHH---------HHHhcCCCCcCccccccccccccc
Confidence            345689999999874 3332224557789999999999985322211         123467899999999998876532


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeee-eceeeeccCCCCCCC-CCCCcccEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEI-NVDQIWHYNHLPVTF-PRFQNLTRL  189 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~i~~~~~~p~~~-~~l~~L~~L  189 (311)
                      ..                                   .-...+++|++|++++| +++....    ...+ ..+++|+.|
T Consensus       113 l~-----------------------------------~l~~~~~~L~~L~ls~c~~~~~~~~----~~~~~~~~~~L~~L  153 (284)
T d2astb2         113 LQ-----------------------------------TLLSSCSRLDELNLSWCFDFTEKHV----QVAVAHVSETITQL  153 (284)
T ss_dssp             HH-----------------------------------HHHHHCTTCCEEECCCCTTCCHHHH----HHHHHHSCTTCCEE
T ss_pred             cc-----------------------------------hhhHHHHhccccccccccccccccc----hhhhcccccccchh
Confidence            21                                   00123689999999998 5542210    0001 134689999


Q ss_pred             EEecCC-CCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCC
Q 021510          190 IVWHCH-KLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWP  268 (311)
Q Consensus       190 ~i~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~  268 (311)
                      ++.+|. .+++......+.++++|++|++++|..+++-... .      ...+++|++|++++|+.+++-..... ..++
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~------l~~~~~L~~L~L~~C~~i~~~~l~~L-~~~~  225 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E------FFQLNYLQHLSLSRCYDIIPETLLEL-GEIP  225 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-G------GGGCTTCCEEECTTCTTCCGGGGGGG-GGCT
T ss_pred             hhcccccccccccccccccccccccccccccccCCCchhhh-h------hcccCcCCEEECCCCCCCChHHHHHH-hcCC
Confidence            999874 4554423344577999999999999877643221 1      12289999999999999876543332 3689


Q ss_pred             cccEEEEecC
Q 021510          269 ALEILLVYGC  278 (311)
Q Consensus       269 ~L~~L~i~~c  278 (311)
                      +|++|++.+|
T Consensus       226 ~L~~L~l~~~  235 (284)
T d2astb2         226 TLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEeeeCC
Confidence            9999999998

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.38  E-value=1.6e-12  Score=111.11  Aligned_cols=252  Identities=12%  Similarity=0.027  Sum_probs=127.9

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      .++++|+|+++. +......+..++.+++|++|++++|.++.+.. |..++++++|++|+++++... .++.        
T Consensus        50 ~~v~~L~L~~~~-l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i-P~~i~~L~~L~~L~Ls~N~l~-~~~~--------  118 (313)
T d1ogqa_          50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVS-GAIP--------  118 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCE-EECC--------
T ss_pred             EEEEEEECCCCC-CCCCCCCChHHhcCcccccccccccccccccc-ccccccccccchhhhcccccc-cccc--------
Confidence            368899999863 44422225677999999999999887777432 567889999999999997533 3321        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCc-cEEEeeeee
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNL-EVLEISEIN  166 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~  166 (311)
                      .....+++|+.+++.++.....++...           ..+..+.............  .......+..+ +.+.+++++
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~~~~p~~l-----------~~l~~L~~l~l~~n~l~~~--ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALSGTLPPSI-----------SSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGG-----------GGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSE
T ss_pred             ccccchhhhcccccccccccccCchhh-----------ccCcccceeeccccccccc--ccccccccccccccccccccc
Confidence            123456777887777653332222110           0000011111111111100  01112223333 556666665


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      ++...     |..+..+. ...+++..+...... +. ....+++++.+++.++. +...+.  ...      .+++|+.
T Consensus       186 l~~~~-----~~~~~~l~-~~~l~l~~~~~~~~~-~~-~~~~~~~l~~l~~~~~~-l~~~~~--~~~------~~~~L~~  248 (313)
T d1ogqa_         186 LTGKI-----PPTFANLN-LAFVDLSRNMLEGDA-SV-LFGSDKNTQKIHLAKNS-LAFDLG--KVG------LSKNLNG  248 (313)
T ss_dssp             EEEEC-----CGGGGGCC-CSEEECCSSEEEECC-GG-GCCTTSCCSEEECCSSE-ECCBGG--GCC------CCTTCCE
T ss_pred             ccccc-----cccccccc-ccccccccccccccc-cc-ccccccccccccccccc-cccccc--ccc------ccccccc
Confidence            55441     11222222 223444443222222 22 24556667777776665 332221  111      1667777


Q ss_pred             EecccCcccccccCCCcccCCCcccEEEEecCCCccccccccccCCCCCcccccccc
Q 021510          247 LKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       247 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      |+++++.--..+|...  ..+++|++|+++++.--..+|. +........+.+.+++
T Consensus       249 L~Ls~N~l~g~iP~~l--~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         249 LDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccCccCeecccCChHH--hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7777643322555443  4567777777776532225564 2333334445554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=2.3e-12  Score=104.99  Aligned_cols=99  Identities=19%  Similarity=0.308  Sum_probs=50.1

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      .+.++.+.+.++.+...       ..+...++|+.|.+.++. +... +  .+.++++|++|++++|. ++.+..   . 
T Consensus       128 ~~~~~~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~n~-~~~~-~--~l~~l~~L~~L~Ls~n~-l~~l~~---l-  191 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITNI-------SPLAGLTNLQYLSIGNAQ-VSDL-T--PLANLSKLTTLKADDNK-ISDISP---L-  191 (227)
T ss_dssp             CTTCCEEECCSSCCCCC-------GGGGGCTTCCEEECCSSC-CCCC-G--GGTTCTTCCEEECCSSC-CCCCGG---G-
T ss_pred             ccchhhhhchhhhhchh-------hhhccccccccccccccc-cccc-h--hhcccccceecccCCCc-cCCChh---h-
Confidence            34555555555533322       122344566666666542 2222 1  14556666666666664 554421   1 


Q ss_pred             CcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEec
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYG  277 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~  277 (311)
                           ..+++|++|++++| ++++++. .  ..++.|++|++++
T Consensus       192 -----~~l~~L~~L~Ls~N-~lt~i~~-l--~~l~~L~~L~lsn  226 (227)
T d1h6ua2         192 -----ASLPNLIEVHLKNN-QISDVSP-L--ANTSNLFIVTLTN  226 (227)
T ss_dssp             -----GGCTTCCEEECTTS-CCCBCGG-G--TTCTTCCEEEEEE
T ss_pred             -----cCCCCCCEEECcCC-cCCCCcc-c--ccCCCCCEEEeeC
Confidence                 11666666666665 4555542 1  3556666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-12  Score=107.35  Aligned_cols=203  Identities=17%  Similarity=0.172  Sum_probs=115.1

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      +++++|+|++. +++++.  ...+..+++|++|+++++ ++..+. ......+..++++.+.....+..++.        
T Consensus        32 ~~~~~L~Ls~N-~i~~i~--~~~f~~l~~L~~L~ls~n-~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~--------   98 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVP--AASFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDP--------   98 (284)
T ss_dssp             TTCSEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT--------
T ss_pred             CCCCEEECcCC-cCCCCC--HHHhhccccccccccccc-cccccc-cccccccccccccccccccccccccc--------
Confidence            35666666663 355542  123455666666666653 333332 23344455666665555555544432        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV  167 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  167 (311)
                      ..+..+++|++|+++++. +..++.                                    .......+|+.+++.++++
T Consensus        99 ~~~~~l~~L~~L~l~~n~-~~~~~~------------------------------------~~~~~~~~L~~l~l~~N~l  141 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCG-LQELGP------------------------------------GLFRGLAALQYLYLQDNAL  141 (284)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCCCCT------------------------------------TTTTTCTTCCEEECCSSCC
T ss_pred             hhhcccccCCEEecCCcc-cccccc------------------------------------cccchhcccchhhhccccc
Confidence            123455677777776653 222211                                    1112356778888888877


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      +.+.     +..+..+++|+.|++.++ .++.+ +...+..+++|+++++.++. +..+.. +..      ..+++|+.|
T Consensus       142 ~~i~-----~~~f~~~~~L~~L~l~~N-~l~~l-~~~~f~~l~~L~~l~l~~N~-l~~i~~-~~f------~~l~~L~~L  206 (284)
T d1ozna_         142 QALP-----DDTFRDLGNLTHLFLHGN-RISSV-PERAFRGLHSLDRLLLHQNR-VAHVHP-HAF------RDLGRLMTL  206 (284)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-TTT------TTCTTCCEE
T ss_pred             cccC-----hhHhccccchhhcccccC-ccccc-chhhhccccccchhhhhhcc-ccccCh-hHh------hhhhhcccc
Confidence            7661     234566778888888875 56655 43446777888888888776 555432 122      227788888


Q ss_pred             ecccCcccccccCCCcccCCCcccEEEEec
Q 021510          248 KLQDLPKLRCLYPGMHSSEWPALEILLVYG  277 (311)
Q Consensus       248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~  277 (311)
                      +++++ +++.++... ...+++|++|++.+
T Consensus       207 ~l~~N-~i~~~~~~~-~~~~~~L~~L~l~~  234 (284)
T d1ozna_         207 YLFAN-NLSALPTEA-LAPLRALQYLRLND  234 (284)
T ss_dssp             ECCSS-CCSCCCHHH-HTTCTTCCEEECCS
T ss_pred             ccccc-ccccccccc-cccccccCEEEecC
Confidence            88774 444544322 13567788888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.2e-11  Score=108.19  Aligned_cols=79  Identities=25%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             cCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccc
Q 021510            6 AFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVD   85 (311)
Q Consensus         6 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~   85 (311)
                      .+.+|++|++.++ +++.+    ..++.+++|++|+++++ +++.+   +.++.+++|++|++++|. +..++       
T Consensus        42 ~l~~l~~L~l~~~-~I~~l----~gl~~L~nL~~L~Ls~N-~l~~l---~~l~~L~~L~~L~L~~n~-i~~i~-------  104 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKSI----DGVEYLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNNQ-IADIT-------  104 (384)
T ss_dssp             HHTTCCEEECCSS-CCCCC----TTGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCG-------
T ss_pred             HhCCCCEEECCCC-CCCCc----cccccCCCCCEEeCcCC-cCCCC---ccccCCcccccccccccc-ccccc-------
Confidence            4568888888885 35553    34578899999999886 57776   237788899999998874 33333       


Q ss_pred             cccceeeecccceEecCCC
Q 021510           86 NAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        86 ~~~~~~~l~~L~~L~l~~~  104 (311)
                         .+..+++|+.|++.++
T Consensus       105 ---~l~~l~~L~~L~~~~~  120 (384)
T d2omza2         105 ---PLANLTNLTGLTLFNN  120 (384)
T ss_dssp             ---GGTTCTTCCEEECCSS
T ss_pred             ---cccccccccccccccc
Confidence               2446677888877664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=2.1e-11  Score=106.59  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEcccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCS   72 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~   72 (311)
                      ..+++|++|+++++ .++++    ++++.+++|++|++++|. +..+   ..+..+++|+.|++.++.
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l----~~l~~L~~L~~L~L~~n~-i~~i---~~l~~l~~L~~L~~~~~~  121 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDI----TPLKNLTKLVDILMNNNQ-IADI---TPLANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCcCC-cCCCC----ccccCCcccccccccccc-cccc---cccccccccccccccccc
Confidence            46799999999996 57774    357899999999999974 5555   346789999999987654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=2.8e-12  Score=102.39  Aligned_cols=163  Identities=20%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      ..++++++|++.++ .++.+   ..+..+++|++|+++++ .+..++          ++..+++|++|+++++. +..++
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l---~~l~~l~nL~~L~Ls~N-~l~~~~----------~l~~l~~L~~L~l~~n~-~~~~~  100 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSI---DGVEYLNNLTQINFSNN-QLTDIT----------PLKNLTKLVDILMNNNQ-IADIT  100 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCG----------GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             HHhcCCCEEECCCC-CCCCc---cccccCCCcCcCccccc-cccCcc----------cccCCcccccccccccc-ccccc
Confidence            44567777777665 34444   33456777777777765 344433          23456677777776652 22211


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV  191 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i  191 (311)
                                                            .+..+++|+.|++.++....+       ..+..+++|+.|++
T Consensus       101 --------------------------------------~l~~l~~L~~L~l~~~~~~~~-------~~~~~l~~L~~L~l  135 (199)
T d2omxa2         101 --------------------------------------PLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLEL  135 (199)
T ss_dssp             --------------------------------------GGTTCTTCSEEECCSSCCCCC-------GGGTTCTTCSEEEC
T ss_pred             --------------------------------------ccccccccccccccccccccc-------cccchhhhhHHhhh
Confidence                                                  112356677777766644433       22345667777777


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCccc
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALE  271 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  271 (311)
                      +++ .+..+ +  .+..+++|++|++.+|. ++.+..   ..      .+++|++|+++++ ++++++. .  ..+++|+
T Consensus       136 ~~n-~l~~~-~--~l~~~~~L~~L~l~~n~-l~~l~~---l~------~l~~L~~L~ls~N-~i~~i~~-l--~~L~~L~  197 (199)
T d2omxa2         136 SSN-TISDI-S--ALSGLTSLQQLNFSSNQ-VTDLKP---LA------NLTTLERLDISSN-KVSDISV-L--AKLTNLE  197 (199)
T ss_dssp             CSS-CCCCC-G--GGTTCTTCSEEECCSSC-CCCCGG---GT------TCTTCCEEECCSS-CCCCCGG-G--GGCTTCS
T ss_pred             hhh-hhccc-c--ccccccccccccccccc-ccCCcc---cc------CCCCCCEEECCCC-CCCCCcc-c--cCCCCCC
Confidence            664 34433 2  24566777777777764 554421   11      1677777777775 4665532 1  3466666


Q ss_pred             EE
Q 021510          272 IL  273 (311)
Q Consensus       272 ~L  273 (311)
                      +|
T Consensus       198 ~L  199 (199)
T d2omxa2         198 SL  199 (199)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.35  E-value=7.6e-12  Score=106.83  Aligned_cols=229  Identities=14%  Similarity=0.051  Sum_probs=135.2

Q ss_pred             CCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccc-eecccccccccccceeeecccceEecCCCCCcccccc
Q 021510           34 FNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMK-EIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCC  112 (311)
Q Consensus        34 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  112 (311)
                      ..+++.|+++++..-.....|..++++++|++|++++|..+. .+|.         .+..+++|++|+++++ ++.....
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~---------~i~~L~~L~~L~Ls~N-~l~~~~~  118 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP---------AIAKLTQLHYLYITHT-NVSGAIP  118 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG---------GGGGCTTCSEEEEEEE-CCEEECC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc---------ccccccccchhhhccc-ccccccc
Confidence            347999999997433222236788999999999999987665 4553         5678999999999987 3444332


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcc-cEEEE
Q 021510          113 EVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNL-TRLIV  191 (311)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L-~~L~i  191 (311)
                      ....          ....+............  .....+..+++|+.+++++|.+...     .|..+..+.++ +.+.+
T Consensus       119 ~~~~----------~~~~L~~l~l~~N~~~~--~~p~~l~~l~~L~~l~l~~n~l~~~-----ip~~~~~l~~l~~~l~~  181 (313)
T d1ogqa_         119 DFLS----------QIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFSKLFTSMTI  181 (313)
T ss_dssp             GGGG----------GCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEE-----CCGGGGCCCTTCCEEEC
T ss_pred             cccc----------chhhhcccccccccccc--cCchhhccCcccceeeccccccccc-----ccccccccccccccccc
Confidence            1110          00001111111111110  1112334567777777777755533     14444455554 55555


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCccc
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALE  271 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  271 (311)
                      .+ +++....+.. +..+. ...+++..+.....+.  ...      ..+++++.+.+.++..-..++ ..  ..+++|+
T Consensus       182 ~~-n~l~~~~~~~-~~~l~-~~~l~l~~~~~~~~~~--~~~------~~~~~l~~l~~~~~~l~~~~~-~~--~~~~~L~  247 (313)
T d1ogqa_         182 SR-NRLTGKIPPT-FANLN-LAFVDLSRNMLEGDAS--VLF------GSDKNTQKIHLAKNSLAFDLG-KV--GLSKNLN  247 (313)
T ss_dssp             CS-SEEEEECCGG-GGGCC-CSEEECCSSEEEECCG--GGC------CTTSCCSEEECCSSEECCBGG-GC--CCCTTCC
T ss_pred             cc-cccccccccc-ccccc-cccccccccccccccc--ccc------ccccccccccccccccccccc-cc--ccccccc
Confidence            54 3444342332 44443 3456666665222221  111      127889999998875433333 22  4578999


Q ss_pred             EEEEecCCCccccccccccCCCCCcccccccc
Q 021510          272 ILLVYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       272 ~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      +|+++++.--..+|..+........+.++.++
T Consensus       248 ~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            99999876555899988888888888888875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.2e-12  Score=106.00  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=123.0

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNA   87 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~   87 (311)
                      +++++|+|++. .++++.  ...+..+++|++|+++++ +++.+   +....+++|++|+++++. +...+.        
T Consensus        31 ~~l~~L~Ls~N-~i~~l~--~~~f~~l~~L~~L~L~~N-~l~~l---~~~~~l~~L~~L~Ls~N~-l~~~~~--------   94 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFS--LATLMPYTRLTQLNLDRA-ELTKL---QVDGTLPVLGTLDLSHNQ-LQSLPL--------   94 (266)
T ss_dssp             TTCCEEECTTS-CCSEEE--GGGGTTCTTCCEEECTTS-CCCEE---ECCSCCTTCCEEECCSSC-CSSCCC--------
T ss_pred             cCCCEEECcCC-cCCCcC--HHHhhccccccccccccc-ccccc---cccccccccccccccccc-cccccc--------
Confidence            58999999995 477753  234678999999999997 67766   334679999999999974 443331        


Q ss_pred             cceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeec
Q 021510           88 IEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINV  167 (311)
Q Consensus        88 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  167 (311)
                       ....+++|+.|+++++. +..++..                                    ....+.++++|++.+|.+
T Consensus        95 -~~~~l~~L~~L~l~~~~-~~~~~~~------------------------------------~~~~l~~l~~L~l~~n~l  136 (266)
T d1p9ag_          95 -LGQTLPALTVLDVSFNR-LTSLPLG------------------------------------ALRGLGELQELYLKGNEL  136 (266)
T ss_dssp             -CTTTCTTCCEEECCSSC-CCCCCSS------------------------------------TTTTCTTCCEEECTTSCC
T ss_pred             -ccccccccccccccccc-cceeecc------------------------------------cccccccccccccccccc
Confidence             33567899999998874 3322221                                    112367888888888877


Q ss_pred             eeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          168 DQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       168 ~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                      ..+.     +..+..+++|+.++++++ +++.+ +...+..+++|++|+++++. ++.++.  +...      +++|+.|
T Consensus       137 ~~l~-----~~~~~~l~~l~~l~l~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-L~~lp~--~~~~------~~~L~~L  200 (266)
T d1p9ag_         137 KTLP-----PGLLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDTLLLQENS-LYTIPK--GFFG------SHLLPFA  200 (266)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCEEECCSSC-CCCCCT--TTTT------TCCCSEE
T ss_pred             ceec-----cccccccccchhcccccc-ccccc-CccccccccccceeecccCC-CcccCh--hHCC------CCCCCEE
Confidence            7661     233556778888888885 56655 44446778889999998886 776642  2222      7788888


Q ss_pred             ecccCc
Q 021510          248 KLQDLP  253 (311)
Q Consensus       248 ~l~~c~  253 (311)
                      .+.+.|
T Consensus       201 ~L~~Np  206 (266)
T d1p9ag_         201 FLHGNP  206 (266)
T ss_dssp             ECCSCC
T ss_pred             EecCCC
Confidence            887643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.2e-11  Score=99.84  Aligned_cols=93  Identities=18%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             CccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccc
Q 021510            4 CDAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEE   83 (311)
Q Consensus         4 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~   83 (311)
                      ..-++++++|++++. .++.+.  ...+..+++|++|+++++.....+ ++..+..+++++++.+..+..+..+..    
T Consensus        25 ~~l~~~l~~L~Ls~n-~i~~l~--~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~----   96 (242)
T d1xwdc1          25 SDLPRNAIELRFVLT-KLRVIQ--KGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINP----   96 (242)
T ss_dssp             SCSCSCCSEEEEESC-CCCEEC--TTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECT----
T ss_pred             CCCCCCCCEEECcCC-cCCccC--hhHhhccchhhhhhhcccccccee-ecccccccccccccccccccccccccc----
Confidence            344568899999885 466642  224577889999999887655443 334556788888888887777766552    


Q ss_pred             cccccceeeecccceEecCCCCCccc
Q 021510           84 VDNAIEKIEFAQLRSLSLGNLPEVTS  109 (311)
Q Consensus        84 ~~~~~~~~~l~~L~~L~l~~~~~l~~  109 (311)
                          ..+..+++|+++++.++ .+..
T Consensus        97 ----~~~~~l~~L~~l~l~~~-~l~~  117 (242)
T d1xwdc1          97 ----EAFQNLPNLQYLLISNT-GIKH  117 (242)
T ss_dssp             ----TSEECCTTCCEEEEESC-CCCS
T ss_pred             ----ccccccccccccccchh-hhcc
Confidence                23567888999999886 4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=2.7e-12  Score=103.40  Aligned_cols=167  Identities=18%  Similarity=0.301  Sum_probs=113.7

Q ss_pred             cCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccc
Q 021510           32 ESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC  111 (311)
Q Consensus        32 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  111 (311)
                      ..+.+|++|++.+| .++.+   ..+..+++|++|+++++ .+..++          .+..+++|++|+++++ ++++++
T Consensus        43 ~~L~~L~~L~l~~~-~i~~l---~~l~~l~~L~~L~L~~n-~i~~l~----------~~~~l~~L~~L~l~~n-~i~~l~  106 (210)
T d1h6ta2          43 NELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIK----------PLANLKNLGWLFLDEN-KVKDLS  106 (210)
T ss_dssp             HHHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCG----------GGTTCTTCCEEECCSS-CCCCGG
T ss_pred             HHhcCccEEECcCC-CCCCc---hhHhhCCCCCEEeCCCc-cccCcc----------ccccCccccccccccc-cccccc
Confidence            45678888888886 45554   33567888999998886 344444          2346788888888876 455433


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEE
Q 021510          112 CEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIV  191 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i  191 (311)
                      .                                      +..+++|+.|++.+|.+..+       ..+..+++++.+++
T Consensus       107 ~--------------------------------------l~~l~~L~~L~l~~~~~~~~-------~~l~~l~~l~~l~~  141 (210)
T d1h6ta2         107 S--------------------------------------LKDLKKLKSLSLEHNGISDI-------NGLVHLPQLESLYL  141 (210)
T ss_dssp             G--------------------------------------GTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCEEEC
T ss_pred             c--------------------------------------cccccccccccccccccccc-------cccccccccccccc
Confidence            2                                      13368888888888865543       23456678888888


Q ss_pred             ecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCccc
Q 021510          192 WHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALE  271 (311)
Q Consensus       192 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~  271 (311)
                      .++ .+.+. +  ....+++|++++++++. ++++..   ..      .+++|++|+++++ ++++++. .  ..+++|+
T Consensus       142 ~~n-~l~~~-~--~~~~l~~L~~l~l~~n~-l~~i~~---l~------~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~  203 (210)
T d1h6ta2         142 GNN-KITDI-T--VLSRLTKLDTLSLEDNQ-ISDIVP---LA------GLTKLQNLYLSKN-HISDLRA-L--AGLKNLD  203 (210)
T ss_dssp             CSS-CCCCC-G--GGGGCTTCSEEECCSSC-CCCCGG---GT------TCTTCCEEECCSS-CCCBCGG-G--TTCTTCS
T ss_pred             ccc-ccccc-c--ccccccccccccccccc-cccccc---cc------CCCCCCEEECCCC-CCCCChh-h--cCCCCCC
Confidence            775 44433 2  25678889999998886 665532   11      2888999999886 5777642 2  4688899


Q ss_pred             EEEEec
Q 021510          272 ILLVYG  277 (311)
Q Consensus       272 ~L~i~~  277 (311)
                      +|++++
T Consensus       204 ~L~Ls~  209 (210)
T d1h6ta2         204 VLELFS  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            998864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.3e-12  Score=106.43  Aligned_cols=190  Identities=16%  Similarity=0.279  Sum_probs=131.6

Q ss_pred             ccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcc
Q 021510           29 LKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVT  108 (311)
Q Consensus        29 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  108 (311)
                      .....+.+|++|++.+| +++.+   ..+..+++|++|+++++. +..+.          .+..+++|+++.+.++. ++
T Consensus        35 ~~~~~l~~L~~L~l~~~-~i~~l---~~l~~l~~L~~L~ls~n~-i~~~~----------~l~~l~~l~~l~~~~n~-~~   98 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGT-GVTTI---EGVQYLNNLIGLELKDNQ-ITDLA----------PLKNLTKITELELSGNP-LK   98 (227)
T ss_dssp             ECHHHHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCCG----------GGTTCCSCCEEECCSCC-CS
T ss_pred             CCHHHcCCcCEEECCCC-CCCcc---hhHhcCCCCcEeecCCce-eeccc----------ccccccccccccccccc-cc
Confidence            34467889999999987 46665   346789999999999974 44433          24567888888888763 33


Q ss_pred             ccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccE
Q 021510          109 SFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTR  188 (311)
Q Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~  188 (311)
                      +++                                      .+..+++|+.+.++++....+       ..+...+.++.
T Consensus        99 ~i~--------------------------------------~l~~l~~L~~l~l~~~~~~~~-------~~~~~~~~~~~  133 (227)
T d1h6ua2          99 NVS--------------------------------------AIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQV  133 (227)
T ss_dssp             CCG--------------------------------------GGTTCTTCCEEECTTSCCCCC-------GGGTTCTTCCE
T ss_pred             ccc--------------------------------------ccccccccccccccccccccc-------chhccccchhh
Confidence            322                                      123378999999998855543       23445678889


Q ss_pred             EEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCC
Q 021510          189 LIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWP  268 (311)
Q Consensus       189 L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~  268 (311)
                      +.+.++.... . .  .+..+++|++|++++|. +.....   .      ..+++|++|+++++ ++++++. .  ..++
T Consensus       134 l~~~~~~~~~-~-~--~~~~~~~L~~L~l~~n~-~~~~~~---l------~~l~~L~~L~Ls~n-~l~~l~~-l--~~l~  195 (227)
T d1h6ua2         134 LYLDLNQITN-I-S--PLAGLTNLQYLSIGNAQ-VSDLTP---L------ANLSKLTTLKADDN-KISDISP-L--ASLP  195 (227)
T ss_dssp             EECCSSCCCC-C-G--GGGGCTTCCEEECCSSC-CCCCGG---G------TTCTTCCEEECCSS-CCCCCGG-G--GGCT
T ss_pred             hhchhhhhch-h-h--hhccccccccccccccc-cccchh---h------cccccceecccCCC-ccCCChh-h--cCCC
Confidence            9888764433 2 1  25678899999999986 544321   1      12899999999987 6777653 2  4689


Q ss_pred             cccEEEEecCCCccccccccccCCCCCcccc
Q 021510          269 ALEILLVYGCDKLKIFAADLSQNNENDQLGI  299 (311)
Q Consensus       269 ~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~  299 (311)
                      +|++|++++| +++.++. +........+.+
T Consensus       196 ~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         196 NLIEVHLKNN-QISDVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             TCCEEECTTS-CCCBCGG-GTTCTTCCEEEE
T ss_pred             CCCEEECcCC-cCCCCcc-cccCCCCCEEEe
Confidence            9999999999 6887763 444444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=5.5e-12  Score=101.48  Aligned_cols=164  Identities=20%  Similarity=0.271  Sum_probs=88.0

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      +.+|++|++.++. ++.+    ..++.+++|++|+++++ +++.+   ..+..+++|++|+++++ .+..++        
T Consensus        45 L~~L~~L~l~~~~-i~~l----~~l~~l~~L~~L~L~~n-~i~~l---~~~~~l~~L~~L~l~~n-~i~~l~--------  106 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGN-KLTDI---KPLANLKNLGWLFLDEN-KVKDLS--------  106 (210)
T ss_dssp             HHTCCEEECTTSC-CCCC----TTGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCGG--------
T ss_pred             hcCccEEECcCCC-CCCc----hhHhhCCCCCEEeCCCc-cccCc---cccccCccccccccccc-cccccc--------
Confidence            4566666666642 4442    23456677777777665 45554   22455667777777665 333333        


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                        .+..+++|+.|++.++.. ..++                                      .+..+++|+.+++.++.
T Consensus       107 --~l~~l~~L~~L~l~~~~~-~~~~--------------------------------------~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         107 --SLKDLKKLKSLSLEHNGI-SDIN--------------------------------------GLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             --GGTTCTTCCEEECTTSCC-CCCG--------------------------------------GGGGCTTCCEEECCSSC
T ss_pred             --cccccccccccccccccc-cccc--------------------------------------ccccccccccccccccc
Confidence              233456666666666531 1111                                      11235666666666665


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCe
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTT  246 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~  246 (311)
                      ++..       .....+++|+.+++.++ .+..+ +  .+.++++|++|++++|. ++++..   ...      +++|+.
T Consensus       146 l~~~-------~~~~~l~~L~~l~l~~n-~l~~i-~--~l~~l~~L~~L~Ls~N~-i~~l~~---l~~------l~~L~~  204 (210)
T d1h6ta2         146 ITDI-------TVLSRLTKLDTLSLEDN-QISDI-V--PLAGLTKLQNLYLSKNH-ISDLRA---LAG------LKNLDV  204 (210)
T ss_dssp             CCCC-------GGGGGCTTCSEEECCSS-CCCCC-G--GGTTCTTCCEEECCSSC-CCBCGG---GTT------CTTCSE
T ss_pred             cccc-------ccccccccccccccccc-ccccc-c--cccCCCCCCEEECCCCC-CCCChh---hcC------CCCCCE
Confidence            5433       22335566777777664 34433 1  14566677777777664 555421   111      666666


Q ss_pred             Eecc
Q 021510          247 LKLQ  250 (311)
Q Consensus       247 L~l~  250 (311)
                      |+++
T Consensus       205 L~Ls  208 (210)
T d1h6ta2         205 LELF  208 (210)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            6654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=2.3e-12  Score=102.92  Aligned_cols=149  Identities=24%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             CCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccccc
Q 021510            7 FPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDN   86 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~   86 (311)
                      ++++++|++.++. ++.+    ..++.+++|++|+++++ +++.+   ..++.+++|++|+++++. +..++        
T Consensus        39 l~~l~~L~l~~~~-i~~l----~~l~~l~nL~~L~Ls~N-~l~~~---~~l~~l~~L~~L~l~~n~-~~~~~--------  100 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSI----DGVEYLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNNQ-IADIT--------  100 (199)
T ss_dssp             HTTCCEEECTTSC-CCCC----TTGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCG--------
T ss_pred             hcCCCEEECCCCC-CCCc----cccccCCCcCcCccccc-cccCc---ccccCCcccccccccccc-ccccc--------
Confidence            5667777777643 4442    23456777777777775 45554   225667777777776653 22222        


Q ss_pred             ccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeee
Q 021510           87 AIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEIN  166 (311)
Q Consensus        87 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  166 (311)
                        .+..+++|+.|+++++.... .                                      .....+++|+.|++++|+
T Consensus       101 --~l~~l~~L~~L~l~~~~~~~-~--------------------------------------~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         101 --PLANLTNLTGLTLFNNQITD-I--------------------------------------DPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             --GGTTCTTCSEEECCSSCCCC-C--------------------------------------GGGTTCTTCSEEECCSSC
T ss_pred             --cccccccccccccccccccc-c--------------------------------------cccchhhhhHHhhhhhhh
Confidence              23355667777766653321 1                                      111235677777777765


Q ss_pred             ceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccccccee
Q 021510          167 VDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       167 l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      +..+       +.+..+++|+.|++.++ .++.+ +  .+.++++|++|++++|+ ++++
T Consensus       140 l~~~-------~~l~~~~~L~~L~l~~n-~l~~l-~--~l~~l~~L~~L~ls~N~-i~~i  187 (199)
T d2omxa2         140 ISDI-------SALSGLTSLQQLNFSSN-QVTDL-K--PLANLTTLERLDISSNK-VSDI  187 (199)
T ss_dssp             CCCC-------GGGTTCTTCSEEECCSS-CCCCC-G--GGTTCTTCCEEECCSSC-CCCC
T ss_pred             hccc-------ccccccccccccccccc-cccCC-c--cccCCCCCCEEECCCCC-CCCC
Confidence            5543       23445667777777764 34444 2  14567777777777764 5554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=1.4e-10  Score=98.35  Aligned_cols=227  Identities=11%  Similarity=0.126  Sum_probs=133.0

Q ss_pred             ccCCcccEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceeccccccc
Q 021510            5 DAFPLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ..+++|++|+++++. +..+  .+..+..+++|++|+++++ +++.+  +.  ...+.+++|.+.++ .+..+...    
T Consensus        52 ~~l~~L~~L~l~~n~-~~~i--~~~~f~~l~~L~~L~l~~n-~l~~l--~~--~~~~~l~~L~~~~n-~l~~l~~~----  118 (305)
T d1xkua_          52 KNLKNLHTLILINNK-ISKI--SPGAFAPLVKLERLYLSKN-QLKEL--PE--KMPKTLQELRVHEN-EITKVRKS----  118 (305)
T ss_dssp             TTCTTCCEEECCSSC-CCCB--CTTTTTTCTTCCEEECCSS-CCSBC--CS--SCCTTCCEEECCSS-CCCBBCHH----
T ss_pred             hcccccccccccccc-cccc--chhhhhCCCccCEecccCC-ccCcC--cc--chhhhhhhhhcccc-chhhhhhh----
Confidence            456889999999975 4443  1344688999999999997 56665  22  23567888887764 33333210    


Q ss_pred             ccccceeeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeee
Q 021510           85 DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISE  164 (311)
Q Consensus        85 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  164 (311)
                          .......+..+.....+.........         ....+..+............     .....+++|++|++.+
T Consensus       119 ----~~~~~~~~~~l~~~~n~~~~~~~~~~---------~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~L~~L~l~~  180 (305)
T d1xkua_         119 ----VFNGLNQMIVVELGTNPLKSSGIENG---------AFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDG  180 (305)
T ss_dssp             ----HHTTCTTCCEEECCSSCCCGGGBCTT---------GGGGCTTCCEEECCSSCCCS-----CCSSCCTTCSEEECTT
T ss_pred             ----hhhccccccccccccccccccCCCcc---------ccccccccCccccccCCccc-----cCcccCCccCEEECCC
Confidence                01112333334433322111100000         00000001111111000000     0012368899999999


Q ss_pred             eeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCcc
Q 021510          165 INVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQL  244 (311)
Q Consensus       165 ~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  244 (311)
                      +......     +..+..++.+++|.++++ .+... +...+..+++|++|++++|. ++.++.  ....      +++|
T Consensus       181 n~~~~~~-----~~~~~~~~~l~~L~~s~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-L~~lp~--~l~~------l~~L  244 (305)
T d1xkua_         181 NKITKVD-----AASLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNNK-LVKVPG--GLAD------HKYI  244 (305)
T ss_dssp             SCCCEEC-----TGGGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSSC-CSSCCT--TTTT------CSSC
T ss_pred             CcCCCCC-----hhHhhccccccccccccc-ccccc-ccccccccccceeeeccccc-cccccc--cccc------ccCC
Confidence            8655551     345677889999999886 56656 33457889999999999996 776632  2222      8999


Q ss_pred             CeEecccCcccccccCCCc-----ccCCCcccEEEEecCC
Q 021510          245 TTLKLQDLPKLRCLYPGMH-----SSEWPALEILLVYGCD  279 (311)
Q Consensus       245 ~~L~l~~c~~L~~l~~~~~-----~~~~~~L~~L~i~~c~  279 (311)
                      +.|+++++ ++++++...+     ....++|+.|++.++|
T Consensus       245 ~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         245 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            99999985 6888754321     1245779999999887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.2e-10  Score=91.99  Aligned_cols=206  Identities=16%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             cEEeecccccccccccccccccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccce
Q 021510           11 QSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEK   90 (311)
Q Consensus        11 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~   90 (311)
                      +.++.++ .+++.++.     +-++++++|+++++ +++.+. ...+.++++|++|+++++.....++.        ..+
T Consensus        11 ~~i~c~~-~~l~~iP~-----~l~~~l~~L~Ls~n-~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~--------~~f   74 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPS-----DLPRNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEA--------DVF   74 (242)
T ss_dssp             SEEEEES-CSCSSCCS-----CSCSCCSEEEEESC-CCCEEC-TTTTTTCTTCCEEEEESCTTCCEECS--------SSE
T ss_pred             CEEEEeC-CCCCCcCC-----CCCCCCCEEECcCC-cCCccC-hhHhhccchhhhhhhccccccceeec--------ccc
Confidence            3445544 34555422     22468999999986 577652 34567899999999999876655542        234


Q ss_pred             eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceee
Q 021510           91 IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQI  170 (311)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i  170 (311)
                      ..+++++++.+.++.++...+..                                    .+..+++|+++++.++++...
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~------------------------------------~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPE------------------------------------AFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTT------------------------------------SEECCTTCCEEEEESCCCCSC
T ss_pred             ccccccccccccccccccccccc------------------------------------cccccccccccccchhhhccc
Confidence            56788999988877666654432                                    123367888888888866543


Q ss_pred             eccCCCCCCCCCCCcccEEEEe--cCCCCccccchHHHhcc-CCCcEEEEccccccceecccccccCcCCcccCCccCeE
Q 021510          171 WHYNHLPVTFPRFQNLTRLIVW--HCHKLKYIFSASMIRSL-KQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTL  247 (311)
Q Consensus       171 ~~~~~~p~~~~~l~~L~~L~i~--~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L  247 (311)
                             .....+.+++.+.+.  +...+..+... .+..+ ..++.+++.++. ++.+..  ....      .++++++
T Consensus       119 -------~~~~~~~~l~~l~~~~~~n~~l~~i~~~-~~~~~~~~l~~L~l~~n~-l~~i~~--~~~~------~~~l~~~  181 (242)
T d1xwdc1         119 -------PDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNG-IQEIHN--CAFN------GTQLDEL  181 (242)
T ss_dssp             -------CCCTTTCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSC-CCEECT--TTTT------TCCEEEE
T ss_pred             -------cccccccccccccccccccccccccccc-ccccccccceeeeccccc-cccccc--cccc------chhhhcc
Confidence                   112233344444322  22344444222 23333 367777777665 665532  1111      4555566


Q ss_pred             ecccCcccccccCCCcccCCCcccEEEEecCCCccccccc
Q 021510          248 KLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD  287 (311)
Q Consensus       248 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~  287 (311)
                      ...++.+++.++.... ..+++|++|+++++. ++.+|.+
T Consensus       182 ~~l~~n~l~~l~~~~f-~~l~~L~~L~Ls~N~-l~~l~~~  219 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPSY  219 (242)
T ss_dssp             ECTTCTTCCCCCTTTT-TTSCCCSEEECTTSC-CCCCCSS
T ss_pred             ccccccccccccHHHh-cCCCCCCEEECCCCc-CCccCHH
Confidence            5555667777765431 356777777776654 6666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.7e-10  Score=96.91  Aligned_cols=205  Identities=14%  Similarity=0.136  Sum_probs=138.3

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCC
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV  114 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  114 (311)
                      +++++|+++++ +++.+. +..+.++++|++|+++++ .+..+..        .....++.++++.+.....++.++.. 
T Consensus        32 ~~~~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~ls~n-~l~~i~~--------~~~~~~~~~~~l~~~~~~~~~~l~~~-   99 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSN-VLARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPA-   99 (284)
T ss_dssp             TTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred             CCCCEEECcCC-cCCCCC-HHHhhccccccccccccc-ccccccc--------ccccccccccccccccccccccccch-
Confidence            67889999885 577652 345778888999998875 4444432        12234566777766665555544321 


Q ss_pred             CCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecC
Q 021510          115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHC  194 (311)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c  194 (311)
                                                         .+..+++|++|++++|.+..++     +..+....+|+.+++.+ 
T Consensus       100 -----------------------------------~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~l~l~~-  138 (284)
T d1ozna_         100 -----------------------------------TFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQD-  138 (284)
T ss_dssp             -----------------------------------TTTTCTTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCS-
T ss_pred             -----------------------------------hhcccccCCEEecCCccccccc-----ccccchhcccchhhhcc-
Confidence                                               1234789999999999776652     23456778999999998 


Q ss_pred             CCCccccchHHHhccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEE
Q 021510          195 HKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILL  274 (311)
Q Consensus       195 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~  274 (311)
                      +.++.+ +...+..+++|++|+++++. ++.+... ..      ..+++|+.+.+.++ +++.+.... ...+++|++|+
T Consensus       139 N~l~~i-~~~~f~~~~~L~~L~l~~N~-l~~l~~~-~f------~~l~~L~~l~l~~N-~l~~i~~~~-f~~l~~L~~L~  207 (284)
T d1ozna_         139 NALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPER-AF------RGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLY  207 (284)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTT-TT------TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEE
T ss_pred             cccccc-ChhHhccccchhhcccccCc-ccccchh-hh------ccccccchhhhhhc-cccccChhH-hhhhhhccccc
Confidence            466666 44457789999999999996 7776431 11      22889999999985 455554333 25789999999


Q ss_pred             EecCCCccccccccccCCCCCcccccccc
Q 021510          275 VYGCDKLKIFAADLSQNNENDQLGIPAQQ  303 (311)
Q Consensus       275 i~~c~~l~~lp~~~~~~~~~~~~~~~~~~  303 (311)
                      ++++.--...+..+........+.++++.
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccCEEEecCCC
Confidence            98866544444445555666677776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.93  E-value=1.5e-08  Score=86.68  Aligned_cols=60  Identities=22%  Similarity=0.100  Sum_probs=45.6

Q ss_pred             ccCCCcEEEEccccccceecccccccCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCcccccc
Q 021510          208 SLKQLQRLEICSCEDLQEIISENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAA  286 (311)
Q Consensus       208 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~  286 (311)
                      .+++|++|++++|+ ++.++.   .        +++|+.|++++| ++++++..     +++|++|++++|+ ++.+|.
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~---~--------~~~L~~L~L~~N-~L~~l~~~-----~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPA---L--------PPRLERLIASFN-HLAEVPEL-----PQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCEEECCCCc-cCcccc---c--------cCCCCEEECCCC-cCCccccc-----cCCCCEEECcCCc-CCCCCc
Confidence            35789999999986 776532   1        789999999875 67777542     4679999999987 888874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.7e-09  Score=80.92  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=58.5

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceeccccccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTD  233 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  233 (311)
                      +++|+.|++++|.++.+       ..+..+++|+.|+++++ .+..+ +...+..+++|+.|++++|. ++.+.....  
T Consensus        40 l~~L~~L~Ls~N~i~~l-------~~~~~l~~L~~L~ls~N-~i~~l-~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~--  107 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDP--  107 (162)
T ss_dssp             TTCCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGG--
T ss_pred             cccCCEEECCCCCCCcc-------CCcccCcchhhhhcccc-cccCC-Cccccccccccccceecccc-ccccccccc--
Confidence            56777777777766665       23456677777777775 35545 33335567777777777775 544421111  


Q ss_pred             CcCCcccCCccCeEecccCcccccccCC--CcccCCCcccEEE
Q 021510          234 QVIPYFVFPQLTTLKLQDLPKLRCLYPG--MHSSEWPALEILL  274 (311)
Q Consensus       234 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~--~~~~~~~~L~~L~  274 (311)
                          +..+++|++|.+++|+ +...+..  .....+|+|++|+
T Consensus       108 ----l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         108 ----LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ----GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             ----cccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence                1226777777777764 2333210  0112456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.4e-09  Score=79.93  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             ccCCCCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCcccc
Q 021510           31 VESFNQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF  110 (311)
Q Consensus        31 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  110 (311)
                      +.+..++|+|+++++ +++.+  +.....+++|++|+++++ .+..+.          ++..+++|++|+++++ .++.+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i--~~~~~~l~~L~~L~Ls~N-~i~~l~----------~~~~l~~L~~L~ls~N-~i~~l   78 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDN-EIRKLD----------GFPLLRRLKTLLVNNN-RICRI   78 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSS-CCCEEC----------CCCCCSSCCEEECCSS-CCCEE
T ss_pred             ccCcCcCcEEECCCC-CCCcc--CccccccccCCEEECCCC-CCCccC----------CcccCcchhhhhcccc-cccCC
Confidence            345567777777775 45555  233455677777777775 344443          2345566666666665 34433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.76  E-value=2.6e-07  Score=78.67  Aligned_cols=41  Identities=27%  Similarity=0.156  Sum_probs=31.6

Q ss_pred             cCCccCeEecccCcccccccCCCcccCCCcccEEEEecCCCccccccc
Q 021510          240 VFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCDKLKIFAAD  287 (311)
Q Consensus       240 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~~l~~lp~~  287 (311)
                      .+++|++|++++| +++.++.     .+++|++|++.+| +++.+|..
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~~  322 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPEL  322 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCCC
T ss_pred             cCCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCC-cCCccccc
Confidence            3689999999986 5777753     3688999999776 67777753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=8.8e-09  Score=75.00  Aligned_cols=16  Identities=19%  Similarity=0.144  Sum_probs=8.0

Q ss_pred             HhccCCCcEEEEcccc
Q 021510          206 IRSLKQLQRLEICSCE  221 (311)
Q Consensus       206 ~~~l~~L~~L~l~~c~  221 (311)
                      +..+++|++|++++++
T Consensus        86 l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             GGGCTTCCEEECTTSG
T ss_pred             hcCCCCCCEEECCCCc
Confidence            3445555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.66  E-value=1.2e-10  Score=92.61  Aligned_cols=127  Identities=18%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             CccEEEEcC-CCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCC
Q 021510           36 QLKNIEAYN-CDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV  114 (311)
Q Consensus        36 ~L~~L~l~~-c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  114 (311)
                      ..+.+.+.+ .+.++.+  +..+..+++|++|+++++ .++.++          .+..+++|++|+++++ .++.++.. 
T Consensus        24 ~~~~~~l~~~~~~i~~l--~~sl~~L~~L~~L~Ls~n-~I~~i~----------~l~~l~~L~~L~Ls~N-~i~~i~~~-   88 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTN-NIEKIS----------SLSGMENLRILSLGRN-LIKKIENL-   88 (198)
T ss_dssp             TCSCEECCBCCTTCCCC--HHHHHHTTTCCEEECSEE-EESCCC----------CHHHHTTCCEEECCEE-EECSCSSH-
T ss_pred             ccceeeeecccCchhhh--hhHHhcccccceeECccc-CCCCcc----------cccCCccccChhhccc-cccccccc-
Confidence            344455443 2233333  345667777888887764 344433          2445677777777765 33332210 


Q ss_pred             CCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecC
Q 021510          115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHC  194 (311)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c  194 (311)
                                                          ...+++|++|++++|+++.+       +.+..+++|+.|+++++
T Consensus        89 ------------------------------------~~~~~~L~~L~l~~N~i~~l-------~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          89 ------------------------------------DAVADTLEELWISYNQIASL-------SGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             ------------------------------------HHHHHHCCEEECSEEECCCH-------HHHHHHHHSSEEEESEE
T ss_pred             ------------------------------------cccccccccccccccccccc-------ccccccccccccccccc
Confidence                                                01135677777777766654       12345667777777764


Q ss_pred             CCCccccchHHHhccCCCcEEEEcccc
Q 021510          195 HKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       195 ~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                       .+..+.....+..+++|++|++++++
T Consensus       126 -~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         126 -KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             -hhccccccccccCCCccceeecCCCc
Confidence             44444222346677777777777776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=1e-07  Score=74.70  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=58.1

Q ss_pred             CCccEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCC
Q 021510           35 NQLKNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEV  114 (311)
Q Consensus        35 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  114 (311)
                      +++++|+++++ .++...+...+..+++|++|+++++. +..++.        ..+..+++|++|+++++ +++.++.. 
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~--------~~~~~~~~L~~L~Ls~N-~l~~l~~~-   96 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------NAFEGASHIQELQLGEN-KIKEISNK-   96 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------TTTTTCTTCCEEECCSC-CCCEECSS-
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccccc--------cccccccccceeeeccc-cccccCHH-
Confidence            56777777764 34333233455666777777776643 222221        12334566666666665 45444331 


Q ss_pred             CCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecC
Q 021510          115 ETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHC  194 (311)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c  194 (311)
                                                         .+..+++|++|++++|+++.+.     +..+..+++|+++++.+.
T Consensus        97 -----------------------------------~F~~l~~L~~L~L~~N~l~~i~-----~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          97 -----------------------------------MFLGLHQLKTLNLYDNQISCVM-----PGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             -----------------------------------SSTTCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECTTC
T ss_pred             -----------------------------------HHhCCCcccccccCCccccccC-----HHHhcCCccccccccccc
Confidence                                               1123566666666666666651     223555666666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=6.6e-08  Score=70.18  Aligned_cols=58  Identities=21%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             CCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          154 LPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +++|++|++++|+++.+      |..+..+++|+.|++++ +.++.+ +  .+..+++|++|++++++
T Consensus        19 l~~L~~L~ls~N~l~~l------p~~~~~l~~L~~L~l~~-N~i~~l-~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASD-NALENV-D--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             GTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCS-SCCCCC-G--GGTTCSSCCEEECCSSC
T ss_pred             CCCCCEEECCCCccCcc------hhhhhhhhccccccccc-cccccc-C--ccccccccCeEECCCCc
Confidence            44444444444444433      22333444444444444 233333 1  13344444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=1.3e-07  Score=74.13  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=80.0

Q ss_pred             cEEEEcCCCCCcccccchhhhccCcccEEEEccccccceecccccccccccceeeecccceEecCCCCCccccccCCCCC
Q 021510           38 KNIEAYNCDKLSNIFWFSTTKCLPRLERIAVINCSKMKEIFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETP  117 (311)
Q Consensus        38 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  117 (311)
                      ++++.++ .+++.+  |..+  .+++++|++++..-...+.        ...+..+++|++|+++++ ++..++..    
T Consensus        11 ~~v~Cs~-~~L~~i--P~~l--p~~l~~L~Ls~N~i~~~~~--------~~~f~~l~~L~~L~L~~N-~i~~~~~~----   72 (192)
T d1w8aa_          11 TTVDCTG-RGLKEI--PRDI--PLHTTELLLNDNELGRISS--------DGLFGRLPHLVKLELKRN-QLTGIEPN----   72 (192)
T ss_dssp             TEEECTT-SCCSSC--CSCC--CTTCSEEECCSCCCCSBCC--------SCSGGGCTTCCEEECCSS-CCCCBCTT----
T ss_pred             CEEEEeC-CCcCcc--CCCC--CCCCCEEEeCCCCCccccc--------ccccCCCceEeeeecccc-cccccccc----
Confidence            3455444 345544  2222  3578888888853322222        112346788888888776 33333221    


Q ss_pred             CCCCCcccccccccccccccccccccccccccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCC
Q 021510          118 SASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKL  197 (311)
Q Consensus       118 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l  197 (311)
                                                      .+..+++|++|++++|+++.+     .+..+..+++|++|++++ +.+
T Consensus        73 --------------------------------~~~~~~~L~~L~Ls~N~l~~l-----~~~~F~~l~~L~~L~L~~-N~l  114 (192)
T d1w8aa_          73 --------------------------------AFEGASHIQELQLGENKIKEI-----SNKMFLGLHQLKTLNLYD-NQI  114 (192)
T ss_dssp             --------------------------------TTTTCTTCCEEECCSCCCCEE-----CSSSSTTCTTCCEEECCS-SCC
T ss_pred             --------------------------------ccccccccceeeecccccccc-----CHHHHhCCCcccccccCC-ccc
Confidence                                            123367888888888888877     133467788888888888 467


Q ss_pred             ccccchHHHhccCCCcEEEEcccc
Q 021510          198 KYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       198 ~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      +.+ +...+..+++|+++++++++
T Consensus       115 ~~i-~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         115 SCV-MPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEE-CTTSSTTCTTCCEEECTTCC
T ss_pred             ccc-CHHHhcCCcccccccccccc
Confidence            766 44447778888888888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.2e-07  Score=67.64  Aligned_cols=105  Identities=21%  Similarity=0.231  Sum_probs=69.2

Q ss_pred             ccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccccCcC
Q 021510          157 LEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRTDQVI  236 (311)
Q Consensus       157 L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  236 (311)
                      .+.++.++.++..+      |..+..+++|++|++.+.+.++.+ +...+..+++|+.|+++++. ++.+...       
T Consensus        10 ~~~l~c~~~~~~~~------p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~-------   74 (156)
T d2ifga3          10 SSGLRCTRDGALDS------LHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPD-------   74 (156)
T ss_dssp             SSCEECCSSCCCTT------TTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTT-------
T ss_pred             CCeEEecCCCCccC------cccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccc-cCCcccc-------
Confidence            34455555544433      555667778888888776667766 44446778888888888886 7766321       


Q ss_pred             CcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          237 PYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       237 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      ++..+++|+.|++++ .+++.++.+.  ....+|++|++.+.|
T Consensus        75 ~f~~l~~L~~L~Ls~-N~l~~l~~~~--~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          75 AFHFTPRLSRLNLSF-NALESLSWKT--VQGLSLQELVLSGNP  114 (156)
T ss_dssp             GGGSCSCCCEEECCS-SCCSCCCSTT--TCSCCCCEEECCSSC
T ss_pred             cccccccccceeccC-CCCcccChhh--hccccccccccCCCc
Confidence            122277888888887 5677777665  334468888888755

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.8e-06  Score=63.14  Aligned_cols=17  Identities=24%  Similarity=0.378  Sum_probs=8.9

Q ss_pred             CCCccEEEeeeeeceee
Q 021510          154 LPNLEVLEISEINVDQI  170 (311)
Q Consensus       154 l~~L~~L~l~~~~l~~i  170 (311)
                      +++|++|++++|+++.+
T Consensus        79 l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          79 TPRLSRLNLSFNALESL   95 (156)
T ss_dssp             CSCCCEEECCSSCCSCC
T ss_pred             cccccceeccCCCCccc
Confidence            45555555555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.07  E-value=6.6e-08  Score=76.26  Aligned_cols=106  Identities=20%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEccccccceecccccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCEDLQEIISENRT  232 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  232 (311)
                      .+++|++|++++|+++.+       +.+..+++|+.|+++++ .++.+ +. ....+++|++|+++++. ++.+..   .
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-------~~l~~l~~L~~L~Ls~N-~i~~i-~~-~~~~~~~L~~L~l~~N~-i~~l~~---~  111 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-------SSLSGMENLRILSLGRN-LIKKI-EN-LDAVADTLEELWISYNQ-IASLSG---I  111 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-------CCHHHHTTCCEEECCEE-EECSC-SS-HHHHHHHCCEEECSEEE-CCCHHH---H
T ss_pred             cccccceeECcccCCCCc-------ccccCCccccChhhccc-ccccc-cc-ccccccccccccccccc-cccccc---c
Confidence            366777777777766654       23456667777777764 34444 21 13345567777777664 554421   1


Q ss_pred             cCcCCcccCCccCeEecccCcccccccCCCcccCCCcccEEEEecCC
Q 021510          233 DQVIPYFVFPQLTTLKLQDLPKLRCLYPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       233 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~c~  279 (311)
                            ..+++|+.|+++++ ++++++.-.....+++|++|++.++|
T Consensus       112 ------~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         112 ------EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ------HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ------cccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence                  11666777777653 33333210111346667777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.75  E-value=2.5e-06  Score=72.76  Aligned_cols=259  Identities=12%  Similarity=-0.015  Sum_probs=126.5

Q ss_pred             CCcccEEeecccccccccc--cccccccCCCCccEEEEcCCCCCcc--ccc------chhhhccCcccEEEEccccccce
Q 021510            7 FPLLQSLILHNLINMERLC--IDRLKVESFNQLKNIEAYNCDKLSN--IFW------FSTTKCLPRLERIAVINCSKMKE   76 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~--~~~------~~~~~~l~~L~~L~i~~c~~l~~   76 (311)
                      ...|++|+|+++. +....  .-...+...++|+.|+++++..-..  ..+      ...+..+++|++|++++|..-..
T Consensus        30 ~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          30 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            4678999998853 32210  0012346778999999987743211  111      23345678899999988742111


Q ss_pred             -ecccccccccccceeeecccceEecCCCCCccccccCCCCCCCCC---C---ccccccccccccccccccccccccccc
Q 021510           77 -IFSIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASP---N---RQVSQEESTAMYCSSEITLDISTLLFN  149 (311)
Q Consensus        77 -~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~---~---~~~~~~~~l~l~~~~~~~~~~~~~~~~  149 (311)
                       +..      ....+...++|++|+++++. ++.............   .   .....+..+.+.. ..........+..
T Consensus       109 ~~~~------l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~l~~  180 (344)
T d2ca6a1         109 AQEP------LIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAK  180 (344)
T ss_dssp             THHH------HHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHH
T ss_pred             cccc------hhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccc-ccccccccccccc
Confidence             100      00122346889999998873 332111000000000   0   0000000011110 0000000111112


Q ss_pred             ccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCcccc---chHHHhccCCCcEEEEcccccccee
Q 021510          150 EKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIF---SASMIRSLKQLQRLEICSCEDLQEI  226 (311)
Q Consensus       150 ~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~  226 (311)
                      .+...++|++|++++|++........+...+..+++|+.|+++++. +....   ....+..++.|++|++++|. +...
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~  258 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSAR  258 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHH
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCch
Confidence            2344678999999888654321111112345667889999998863 43221   11235678889999999987 5432


Q ss_pred             cccccccCcCCcccCCccCeEecccCcccccc-----cCCCcccCCCcccEEEEecCC
Q 021510          227 ISENRTDQVIPYFVFPQLTTLKLQDLPKLRCL-----YPGMHSSEWPALEILLVYGCD  279 (311)
Q Consensus       227 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-----~~~~~~~~~~~L~~L~i~~c~  279 (311)
                      -... ..........+.|++|+++++. ++.-     .... ...++.|++|++.++.
T Consensus       259 g~~~-l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l-~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         259 GAAA-VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHH-HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred             hhHH-HHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHH-HccCCCCCEEECCCCc
Confidence            1000 0000000115678999998853 4432     1111 1146778888887643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.70  E-value=8.1e-05  Score=62.96  Aligned_cols=236  Identities=12%  Similarity=0.046  Sum_probs=111.3

Q ss_pred             ccCCcccEEeecccccc--cc-cc----cccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEcccccc
Q 021510            5 DAFPLLQSLILHNLINM--ER-LC----IDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKM   74 (311)
Q Consensus         5 ~~l~~L~~L~L~~~~~l--~~-l~----~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l   74 (311)
                      ...++|+.|++.++..-  .. ..    .-...+...++|++|++++|. +.....   ...+...++|++|.+++|..-
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-cccccccchhhhhcccccchheeccccccc
Confidence            35688999999876321  10 00    001223567899999999874 333211   234456789999999987521


Q ss_pred             cee---ccccccc-ccccceeeecccceEecCCCCCccccccCCCCCCCCCCccccccccccccccccccccc--ccc-c
Q 021510           75 KEI---FSIGEEV-DNAIEKIEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDI--STL-L  147 (311)
Q Consensus        75 ~~~---~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~~~-~  147 (311)
                      ..-   ....... .........+.|+.+.+++. .++.-.........   .....+..+.+..   ..+..  ... +
T Consensus       135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l---~~~~~L~~L~L~~---n~i~~~g~~~~l  207 (344)
T d2ca6a1         135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTF---QSHRLLHTVKMVQ---NGIRPEGIEHLL  207 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHH---HHCTTCCEEECCS---SCCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccCcccceeecccc-cccccccccccchh---hhhhhhccccccc---ccccccccccch
Confidence            100   0000000 00001123456777776654 22211100000000   0000011111111   00000  000 1


Q ss_pred             ccccccCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchH---HHh--ccCCCcEEEEccccc
Q 021510          148 FNEKVALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSAS---MIR--SLKQLQRLEICSCED  222 (311)
Q Consensus       148 ~~~~~~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~---~~~--~l~~L~~L~l~~c~~  222 (311)
                      ...+...++|+.|++++|.++..... .+...+..+++|++|++++|. +.+.....   .+.  ..+.|++|++++|. 
T Consensus       208 ~~~l~~~~~L~~L~Ls~N~i~~~g~~-~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-  284 (344)
T d2ca6a1         208 LEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-  284 (344)
T ss_dssp             HTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-
T ss_pred             hhhhcchhhhcccccccccccccccc-cccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-
Confidence            12234578999999999854421100 012234567899999999984 44331111   122  24679999999986 


Q ss_pred             cceecccccccCcCCcccCCccCeEecccCc
Q 021510          223 LQEIISENRTDQVIPYFVFPQLTTLKLQDLP  253 (311)
Q Consensus       223 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  253 (311)
                      ++.--... ... .-....++|+.|+++++.
T Consensus       285 i~~~~~~~-l~~-~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         285 IELDAVRT-LKT-VIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CBHHHHHH-HHH-HHHHHCTTCCEEECTTSB
T ss_pred             CChHHHHH-HHH-HHHccCCCCCEEECCCCc
Confidence            54311000 000 000026789999988743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.00015  Score=63.01  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=71.3

Q ss_pred             CcccEEeecccccccccccccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceeccccccc
Q 021510            8 PLLQSLILHNLINMERLCIDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIGEEV   84 (311)
Q Consensus         8 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~   84 (311)
                      ++|++|++++ .++.+... ......++++|+|++.+|. ++....   ...+..+++|++|+++++. +........  
T Consensus         2 ~~l~~ld~~~-~~i~~~~~-~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l--   75 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARW-AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCV--   75 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHH-HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHH--
T ss_pred             CCCCEEEeeC-CcCChHHH-HHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHH--
Confidence            4789999976 45655211 1223567999999999984 553211   2345778999999998863 322100000  


Q ss_pred             ccccce-eeecccceEecCCCCCccccccCCCCCCCCCCcccccccccccccccccccccccccccccccCCCccEEEee
Q 021510           85 DNAIEK-IEFAQLRSLSLGNLPEVTSFCCEVETPSASPNRQVSQEESTAMYCSSEITLDISTLLFNEKVALPNLEVLEIS  163 (311)
Q Consensus        85 ~~~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  163 (311)
                        ...+ ....+|++|++++| .+++....                                .+...+..+++|++|+++
T Consensus        76 --~~~l~~~~~~L~~L~L~~n-~it~~~~~--------------------------------~l~~~l~~~~~L~~L~L~  120 (460)
T d1z7xw1          76 --LQGLQTPSCKIQKLSLQNC-CLTGAGCG--------------------------------VLSSTLRTLPTLQELHLS  120 (460)
T ss_dssp             --HHTTCSTTCCCCEEECTTS-CCBGGGHH--------------------------------HHHHHTTSCTTCCEEECC
T ss_pred             --HHHHhcCCCCCCEEECCCC-Cccccccc--------------------------------cccchhhccccccccccc
Confidence              0001 11247999999988 46543221                                011122347899999999


Q ss_pred             eeecee
Q 021510          164 EINVDQ  169 (311)
Q Consensus       164 ~~~l~~  169 (311)
                      +|.+..
T Consensus       121 ~N~i~~  126 (460)
T d1z7xw1         121 DNLLGD  126 (460)
T ss_dssp             SSBCHH
T ss_pred             cccchh
Confidence            986553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.00015  Score=54.32  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=38.5

Q ss_pred             cCCCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccchHHHhccCCCcEEEEcccc
Q 021510          153 ALPNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFSASMIRSLKQLQRLEICSCE  221 (311)
Q Consensus       153 ~l~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  221 (311)
                      .+++|++|++++|+++.+...   +..+..+++|+.|++++ +.++++.....+. ...|+++++.+++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~---~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~-~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSG-NELKSERELDKIK-GLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGG---GTHHHHSTTCCCCCCTT-SCCCCGGGHHHHT-TCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchh---HHHHhhCCccccccccc-Cccccchhhhhhh-ccccceeecCCCC
Confidence            368888899988877765210   11234566777777777 4555553333233 3357777777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0014  Score=56.61  Aligned_cols=113  Identities=19%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CCccEEEeeeeeceeeeccCCCCCCCCCCCcccEEEEecCCCCccccc---hHHHhccCCCcEEEEccccccceecc---
Q 021510          155 PNLEVLEISEINVDQIWHYNHLPVTFPRFQNLTRLIVWHCHKLKYIFS---ASMIRSLKQLQRLEICSCEDLQEIIS---  228 (311)
Q Consensus       155 ~~L~~L~l~~~~l~~i~~~~~~p~~~~~l~~L~~L~i~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~---  228 (311)
                      ++|++|+|++++++.....    .-++.+++++.|++.+|. +++...   ...+..+++|++|++++++ ++....   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~----~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWA----ELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHH----HHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHH----HHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHH
Confidence            4688888888766543111    112356788899999884 443211   2235678889999998875 542100   


Q ss_pred             cccccCcCCcccCCccCeEecccCcccccccCCC---cccCCCcccEEEEecCC
Q 021510          229 ENRTDQVIPYFVFPQLTTLKLQDLPKLRCLYPGM---HSSEWPALEILLVYGCD  279 (311)
Q Consensus       229 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~---~~~~~~~L~~L~i~~c~  279 (311)
                      .+....     ..++|++|++++|. +++.....   ....+++|++|++.++.
T Consensus        76 ~~~l~~-----~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          76 LQGLQT-----PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTTCS-----TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHhc-----CCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            000000     13578999998874 55432111   11357889999988865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0012  Score=49.23  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=19.9

Q ss_pred             CCCCccEEEEcCCCCCccccc-chhhhccCcccEEEEcc
Q 021510           33 SFNQLKNIEAYNCDKLSNIFW-FSTTKCLPRLERIAVIN   70 (311)
Q Consensus        33 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~   70 (311)
                      .+++|++|+++++ +++.+.+ ...+..+++|+.|++++
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc
Confidence            4566666666664 3444322 23344566666666666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.64  E-value=0.0059  Score=45.44  Aligned_cols=15  Identities=27%  Similarity=0.288  Sum_probs=8.7

Q ss_pred             HhccCCCcEEEEccc
Q 021510          206 IRSLKQLQRLEICSC  220 (311)
Q Consensus       206 ~~~l~~L~~L~l~~c  220 (311)
                      +..-+.|++|+++..
T Consensus       127 L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         127 IEENESLLRVGISFA  141 (167)
T ss_dssp             HHHCSSCCEEECCCC
T ss_pred             HHhCCCccEeeCcCC
Confidence            344566777766544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.81  E-value=0.046  Score=40.30  Aligned_cols=92  Identities=9%  Similarity=-0.014  Sum_probs=53.6

Q ss_pred             CCcccEEeeccccccccc--ccccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEccccccceecccc
Q 021510            7 FPLLQSLILHNLINMERL--CIDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCSKMKEIFSIG   81 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~   81 (311)
                      -+.|++|+|+++..+..-  ......+...++|++|++++|. +..-..   ...+...+.|++|++++|. +..-....
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            478999999886554431  1112234566889999999874 443211   2344567889999999874 32210000


Q ss_pred             cccccccceeeecccceEecCCC
Q 021510           82 EEVDNAIEKIEFAQLRSLSLGNL  104 (311)
Q Consensus        82 ~~~~~~~~~~~l~~L~~L~l~~~  104 (311)
                          ....+..-+.|++|++.++
T Consensus        92 ----l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 ----LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             ----HHHHTTTTCCCSEEECCCC
T ss_pred             ----HHHHHHhCCcCCEEECCCC
Confidence                0012233467888888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.41  E-value=0.14  Score=37.35  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             CCcccEEeecccccccccc--cccccccCCCCccEEEEcCCCCCccccc---chhhhccCcccEEEEcccc
Q 021510            7 FPLLQSLILHNLINMERLC--IDRLKVESFNQLKNIEAYNCDKLSNIFW---FSTTKCLPRLERIAVINCS   72 (311)
Q Consensus         7 l~~L~~L~L~~~~~l~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~   72 (311)
                      -|.|++|++.+...+..-.  .....+...++|++|++++| .+.....   ...+...++++.+++.+|.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            4788888888765544311  11223346678888888887 4433211   2234556788888887764