Citrus Sinensis ID: 021511

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-

MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLAAAH

ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccccccEEEcEEcccccccccccHHHHHcccccccccccEEEEEcccccccccccHHccHHHHHHccc

ccHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccHEEEEEcccccccEEcccccccccEEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccHccHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccHHcccccHHHHHHHHcEEEEEEEEHccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHccc

MAMNQIVSKLFISLVILQAVLfpcnvssakaapessNLFREYIGaefnnvkftdvpinsnvEFHYILSFAidydtssspsptngkfnvfwdtgnlspsqvSAIKNRHSNVKVALSlggdsvssgkvyfnpssvdTWVSNAVASLTSIIKeynldgididyehfqadpnTFAECIGRLIKTLKKngaisfasiapydddqvQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKtqssnykggKVLVSFIsdgsgglapgdgfFTACSRLKSQKQLHGIFVWsaddskkngfrYEKQSQALLAAAH

MAMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASiapydddqVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSaddskkngfRYEKQSQALLAAAH

*****IVSKLFISLVILQAVLFPCNVSSAKAA**SSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYD**********KFNVFWDTGNL*************NVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSA**********************

********KLFISLVILQAVLFPCNVS****APESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLA***

*AMNQIVSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLAA**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		311	2.2.26 [Sep-21-2011]
Q7M443		275	Chitinase 2 OS=Tulipa bak	N/A	no	0.874	0.989	0.693	1e-111
Q9SLP4		314	Chitinase 1 OS=Tulipa bak	N/A	no	0.881	0.872	0.692	1e-107
P39657		283	RuBisCO-associated protei	no	no	0.565	0.621	0.367	2e-21

>sp\|Q7M443\|CHIT2_TULBA Chitinase 2 OS=Tulipa bakeri PE=1 SV=1	Back alignment and function desciption

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 227/274 (82%), Gaps = 2/274 (0%)

Query: 38  LFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSP 97
           LFREYIGA+FN+VKF+DVPIN NV+FH+IL+FAIDY + SSP+PTNG FN FWDT NLSP
Sbjct: 2   LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYTSGSSPTPTNGNFNPFWDTNNLSP 61

Query: 98  SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
           SQV+AIK  ++NVKV++SLGG+SV   +V+FNPSSV +WV NAV+SLT IIK+Y+LDGID
Sbjct: 62  SQVAAIKRTYNNVKVSVSLGGNSVGGERVFFNPSSVSSWVDNAVSSLTKIIKQYHLDGID 121

Query: 158 IDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDY 217
           IDYEHF+ DPNTFAECIG+L+  LKKNG +SF SIAP+DD QVQSHY ALW+ YG  IDY
Sbjct: 122 IDYEHFKGDPNTFAECIGQLVTRLKKNGVVSFVSIAPFDDAQVQSHYQALWEKYGHQIDY 181

Query: 218 VNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLAPGDGFFTACSRLKS 277
           VNFQFY Y+   SV QF+ YF+ Q SNY GGKVLVSF +D SGGL P +GFF ACS LK 
Sbjct: 182 VNFQFYVYSSRMSVEQFLKYFEMQRSNYPGGKVLVSFSTDNSGGLKPRNGFFDACSILKK 241

Query: 278 QKQLHGIFVWSADDS--KKNGFRYEKQSQALLAA 309
           Q +LHGIFVWSADDS    + F+YE Q+Q+LLA+
Sbjct: 242 QGKLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275

Able to cleave glycolchitin.
Tulipa bakeri (taxid: 110455)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4

>sp\|Q9SLP4\|CHIT1_TULBA Chitinase 1 OS=Tulipa bakeri PE=1 SV=1	Back alignment and function description

>sp\|P39657\|RUAP_SOYBN RuBisCO-associated protein OS=Glycine max PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		311
255584142		305	Chitinase 1 precursor, putative [Ricinus	0.974	0.993	0.816	1e-142
224119730		301	predicted protein [Populus trichocarpa]	0.964	0.996	0.807	1e-142
225435136		304	PREDICTED: chitinase 2-like [Vitis vinif	0.964	0.986	0.796	1e-138
147820458		588	hypothetical protein VITISV_042829 [Viti	0.897	0.474	0.820	1e-135
356541269		302	PREDICTED: chitinase 2-like [Glycine max	0.900	0.927	0.814	1e-135
224134044		271	predicted protein [Populus trichocarpa]	0.871	1.0	0.837	1e-132
357499923		306	Chitinase [Medicago truncatula] gi\|35549	0.977	0.993	0.737	1e-132
356529062		311	PREDICTED: chitinase 2-like [Glycine max	0.906	0.906	0.802	1e-130
356550227		308	PREDICTED: chitinase 2-like [Glycine max	0.958	0.967	0.719	1e-122
255584144		310	Chitinase 1 precursor, putative [Ricinus	0.909	0.912	0.739	1e-121

>gi\|255584142\|ref\|XP_002532811.1\| Chitinase 1 precursor, putative [Ricinus communis] gi\|223527431\|gb\|EEF29568.1\| Chitinase 1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/305 (81%), Positives = 274/305 (89%), Gaps = 2/305 (0%)

Query: 7   VSKLFISLVILQAVLFPCNVSSAKAAPESSNLFREYIGAEFNNVKFTDVPINSNVEFHYI 66
           +SKL I+L+ILQA+ FP + S+ +AAP +S+LFREYIGAEFNNVKFTDVPIN NV+FH+I
Sbjct: 3   LSKLLITLLILQAI-FPSHTST-QAAPANSDLFREYIGAEFNNVKFTDVPINPNVDFHFI 60

Query: 67  LSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKV 126
           LSFAIDYDTSSSPSPTNG+FNVFWD+ NLSPSQVS+IKN++SNVKVALSLGGDSV  G  
Sbjct: 61  LSFAIDYDTSSSPSPTNGQFNVFWDSDNLSPSQVSSIKNQYSNVKVALSLGGDSVQGGYA 120

Query: 127 YFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGA 186
           YF PSSVD+WVS AV+SLT IIK+YNLDGIDIDYEHFQADP+TFAECIG+LI  LK NG 
Sbjct: 121 YFKPSSVDSWVSKAVSSLTKIIKQYNLDGIDIDYEHFQADPDTFAECIGKLITNLKNNGV 180

Query: 187 ISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYK 246
           ISFASIAP+DDDQVQSHY ALWK YG+ IDYVNFQFYAY QGT+VSQFM YF TQSSNY 
Sbjct: 181 ISFASIAPFDDDQVQSHYQALWKKYGNQIDYVNFQFYAYDQGTTVSQFMSYFTTQSSNYN 240

Query: 247 GGKVLVSFISDGSGGLAPGDGFFTACSRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQAL 306
           GGKVLVSFISDGSGGLAP DGFFTAC+RLKSQ QLHGIFVWSADDSK NGFRYEKQSQAL
Sbjct: 241 GGKVLVSFISDGSGGLAPNDGFFTACNRLKSQNQLHGIFVWSADDSKANGFRYEKQSQAL 300

Query: 307 LAAAH 311
           LA  H
Sbjct: 301 LAIRH 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224119730\|ref\|XP_002318148.1\| predicted protein [Populus trichocarpa] gi\|222858821\|gb\|EEE96368.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225435136\|ref\|XP_002281665.1\| PREDICTED: chitinase 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147820458\|emb\|CAN76732.1\| hypothetical protein VITISV_042829 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356541269\|ref\|XP_003539101.1\| PREDICTED: chitinase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224134044\|ref\|XP_002321722.1\| predicted protein [Populus trichocarpa] gi\|222868718\|gb\|EEF05849.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357499923\|ref\|XP_003620250.1\| Chitinase [Medicago truncatula] gi\|355495265\|gb\|AES76468.1\| Chitinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356529062\|ref\|XP_003533116.1\| PREDICTED: chitinase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356550227\|ref\|XP_003543489.1\| PREDICTED: chitinase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|255584144\|ref\|XP_002532812.1\| Chitinase 1 precursor, putative [Ricinus communis] gi\|223527432\|gb\|EEF29569.1\| Chitinase 1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		311
UNIPROTKB\|Q9KQP6		846	VC_1952 "Chitinase" [Vibrio ch	0.376	0.138	0.325	0.0001
TIGR_CMR\|VC_1952		846	VC_1952 "chitinase" [Vibrio ch	0.376	0.138	0.325	0.0001

UNIPROTKB\|Q9KQP6 VC_1952 "Chitinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

 Score = 122 (48.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 43/132 (32%), Positives = 67/132 (50%)

Query:    95 LSPSQVSA-IKNRHSNVKV-ALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYN 152
             L P+Q    +K   +  KV  LSLGG   + G +  N    D   +N V+SLT++IKE+ 
Sbjct:   582 LDPAQFKQDMKALQAKGKVFVLSLGG---AEGTITLN---TDQDEANFVSSLTALIKEWG 635

Query:   153 LDGIDIDYEHFQ--ADPNTFAECIGRLIKTLKKN-GAISFASIAPYDDDQVQSH---YLA 206
              DG+D+D E        +     +GR +K ++KN G   F ++AP +   VQ     Y  
Sbjct:   636 FDGLDVDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAP-EHPYVQGGMVAYSG 694

Query:   207 LWKSYGDLIDYV 218
             +W +Y  +I+ V
Sbjct:   695 IWGAYIPVINEV 706

GO:0004568 "chitinase activity" evidence=ISS

GO:0006032 "chitin catabolic process" evidence=ISS

TIGR_CMR\|VC_1952 VC_1952 "chitinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLP4	CHIT1_TULBA	3, ., 2, ., 1, ., 1, 4	0.6920	0.8810	0.8726	N/A	no
Q7M443	CHIT2_TULBA	3, ., 2, ., 1, ., 1, 4	0.6934	0.8745	0.9890	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.14	0.991
3rd Layer	3.2.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		311
cd06544		253	cd06544, GH18_narbonin, Narbonin is a plant 2S pro	1e-132
pfam00704		325	pfam00704, Glyco_hydro_18, Glycosyl hydrolases fam	3e-16
cd00598		210	cd00598, GH18_chitinase-like, The GH18 (glycosyl h	6e-14
cd02871		312	cd02871, GH18_chitinase_D-like, GH18 domain of Chi	7e-10
smart00636		334	smart00636, Glyco_18, Glyco_18 domain	5e-09
cd06548		322	cd06548, GH18_chitinase, The GH18 (glycosyl hydrol	2e-07
cd06542		255	cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucos	2e-06
cd06545		253	cd06545, GH18_3CO4_chitinase, The Bacteroides thet	3e-06
cd02874		313	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragm	2e-05
COG3325		441	COG3325, ChiA, Chitinase [Carbohydrate transport a	5e-05
cd06546		256	cd06546, GH18_CTS3_chitinase, GH18 domain of CTS3	7e-05
cd02872		362	cd02872, GH18_chitolectin_chitotriosidase, This co	2e-04
COG3469		332	COG3469, COG3469, Chitinase [Carbohydrate transpor	5e-04
cd02878		345	cd02878, GH18_zymocin_alpha, Zymocin, alpha subuni	6e-04

>gnl\|CDD\|119361 cd06544, GH18_narbonin, Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L	Back alignment and domain information

 Score =  376 bits (968), Expect = e-132
 Identities = 156/256 (60%), Positives = 193/256 (75%), Gaps = 4/256 (1%)

Query: 38  LFREYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSP 97
           LFREYIGA+FN V F+DVPIN  VEFH+ILSFAIDYDT S+P  TNGKFN +WDT NL+P
Sbjct: 1   LFREYIGADFNGVTFSDVPINPKVEFHFILSFAIDYDTESNP--TNGKFNPYWDTENLTP 58

Query: 98  SQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGID 157
             V +IK +H NVKV +S+GG  V +    F+PS+VD+WVSNAV+SLTSII+ YNLDGID
Sbjct: 59  EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGID 118

Query: 158 IDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDLIDY 217
           IDYEHF ADP+TF ECIG+LI  LK NG I  ASIAP  +D  QSHYLAL+ +YGD IDY
Sbjct: 119 IDYEHFPADPDTFVECIGQLITELKNNGVIKVASIAPS-EDAEQSHYLALYNAYGDYIDY 177

Query: 218 VNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDGSGGLA-PGDGFFTACSRLK 276
           VN+QFY Y   T+V+++++++   ++NY G KVL SF +DG  G   PG+ F   C RLK
Sbjct: 178 VNYQFYNYGVPTTVAKYVEFYDEVANNYPGKKVLASFSTDGEDGANIPGEIFIGGCKRLK 237

Query: 277 SQKQLHGIFVWSADDS 292
               L G+F+W+ADDS
Sbjct: 238 KNGSLPGVFIWNADDS 253

) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba. Length = 253

>gnl\|CDD\|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18	Back alignment and domain information

>gnl\|CDD\|119349 cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods	Back alignment and domain information

>gnl\|CDD\|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD)	Back alignment and domain information

>gnl\|CDD\|214753 smart00636, Glyco_18, Glyco_18 domain	Back alignment and domain information

>gnl\|CDD\|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	Back alignment and domain information

>gnl\|CDD\|119359 cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins	Back alignment and domain information

>gnl\|CDD\|119362 cd06545, GH18_3CO4_chitinase, The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas	Back alignment and domain information

>gnl\|CDD\|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination	Back alignment and domain information

>gnl\|CDD\|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|119363 cd06546, GH18_CTS3_chitinase, GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii	Back alignment and domain information

>gnl\|CDD\|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases	Back alignment and domain information

>gnl\|CDD\|226000 COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|119357 cd02878, GH18_zymocin_alpha, Zymocin, alpha subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		311
cd06544		253	GH18_narbonin Narbonin is a plant 2S protein from	100.0
cd02879		299	GH18_plant_chitinase_class_V The class V plant chi	100.0
cd06546		256	GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase	100.0
cd02871		312	GH18_chitinase_D-like GH18 domain of Chitinase D (	100.0
cd06548		322	GH18_chitinase The GH18 (glycosyl hydrolases, fami	100.0
cd02873		413	GH18_IDGF The IDGF's (imaginal disc growth factors	100.0
COG3325		441	ChiA Chitinase [Carbohydrate transport and metabol	100.0
cd06545		253	GH18_3CO4_chitinase The Bacteroides thetaiotaomicr	100.0
cd02872		362	GH18_chitolectin_chitotriosidase This conserved do	100.0
cd02878		345	GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin	100.0
smart00636		334	Glyco_18 Glycosyl hydrolase family 18.	100.0
KOG2806		432	consensus Chitinase [Carbohydrate transport and me	100.0
cd02877		280	GH18_hevamine_XipI_class_III This conserved domain	100.0
cd02876		318	GH18_SI-CLP Stabilin-1 interacting chitinase-like	100.0
cd00598		210	GH18_chitinase-like The GH18 (glycosyl hydrolase,	100.0
PF00704		343	Glyco_hydro_18: Glycosyl hydrolases family 18; Int	100.0
cd02874		313	GH18_CFLE_spore_hydrolase Cortical fragment-lytic	99.96
cd06542		255	GH18_EndoS-like Endo-beta-N-acetylglucosaminidases	99.95
cd02875		358	GH18_chitobiase Chitobiase (also known as di-N-ace	99.95
COG3469		332	Chitinase [Carbohydrate transport and metabolism]	99.95
cd06549		298	GH18_trifunctional GH18 domain of an uncharacteriz	99.95
KOG4701		568	consensus Chitinase [Cell wall/membrane/envelope b	99.93
cd06543		294	GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch	99.84
COG3858		423	Predicted glycosyl hydrolase [General function pre	99.65
KOG2091		392	consensus Predicted member of glycosyl hydrolase f	98.75
cd06547		339	GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG	98.22
PF02638		311	DUF187: Glycosyl hydrolase like GH101; InterPro: I	97.7
PF11340		181	DUF3142: Protein of unknown function (DUF3142); In	97.49
PF13200		316	DUF4015: Putative glycosyl hydrolase domain	97.08
PF03644		311	Glyco_hydro_85: Glycosyl hydrolase family 85 ; Int	96.86
PF07745		332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	93.98
TIGR01370		315	cysRS possible cysteinyl-tRNA synthetase, Methanoc	93.43
PF14883		294	GHL13: Hypothetical glycosyl hydrolase family 13	90.43
cd02810		289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	88.22
PF02057		669	Glyco_hydro_59: Glycosyl hydrolase family 59; Inte	87.08
cd02801		231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	86.38
PF02055		496	Glyco_hydro_30: O-Glycosyl hydrolase family 30; In	85.87
PF14871		132	GHL6: Hypothetical glycosyl hydrolase 6	85.1
PF01207		309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	84.55
TIGR02402		542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	83.8
PF14587		384	Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; P	82.02
PRK14582		671	pgaB outer membrane N-deacetylase; Provisional	81.31
cd04740		296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	80.69

>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L	Back alignment and domain information

Probab=100.00  E-value=2e-51  Score=357.85  Aligned_cols=250  Identities=62%  Similarity=1.096  Sum_probs=213.9

Q ss_pred             EEEeeeeecccccccccCCCCeeEEEEEEEeeecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEEECCC
Q 021511           40 REYIGAEFNNVKFTDVPINSNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALSLGGD  119 (311)
Q Consensus        40 ~~Y~~~~~~~~~~~~~~i~~~~~Thii~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvllsiGG~  119 (311)
                      .-|.+......++++++++..+||||||+|+++.+...  .+.++.|...|+.+...++++..+|+++|++|||+|||||
T Consensus         3 ~~y~~~~~~~~~~~dip~~~~~~thii~aFa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~   80 (253)
T cd06544           3 REYIGADFNGVTFSDVPINPKVEFHFILSFAIDYDTES--NPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGR   80 (253)
T ss_pred             hhhhccCCCCccccccCCCCCeeEEEEEEeeeeccccc--CCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCC
Confidence            45666555555677777776669999999995433221  2346778888988877899999999999999999999999


Q ss_pred             CCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCCCeEEEEeCCCCCch
Q 021511          120 SVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQ  199 (311)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p~~~~~  199 (311)
                      +.+...+.+++++|++++++|++|+++++++|||||||||||+|+.|+++|+.|++|||++|++++++++++++|.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~  160 (253)
T cd06544          81 GVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKNNGVIKVASIAPSEDAE  160 (253)
T ss_pred             CCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcccc
Confidence            98654456678899999999999999999999999999999999889999999999999999999999999999976532


Q ss_pred             hhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC-CCCCCChhhHHHHHHHHhcC
Q 021511          200 VQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG-SGGLAPGDGFFTACSRLKSQ  278 (311)
Q Consensus       200 ~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~-~~g~~~~~~~~~~~~~~~~~  278 (311)
                       ...|.+++.++.|+||+|+||+|+.+...+++.+++.|.++.+++|++||++|+|+++ .+++++++.+++++..++++
T Consensus       161 -~~~y~~~~~~~~d~id~~~~qfy~~~~~~~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~~~v~~~~~~~~lp~l~~~  239 (253)
T cd06544         161 -QSHYLALYNAYGDYIDYVNYQFYNYGVPTTVAKYVEFYDEVANNYPGKKVLASFSTDGEDGANIPGEIFIGGCKRLKKN  239 (253)
T ss_pred             -ccccHHHHHHhhCceeEEEhhhhCCCCCCCHHHHHHHHHHHHhCCCcccEEEEEecCCCccCcCChHHhhhhchHhhhC
Confidence             4567888899999999999999988777788888889999889999999999999998 44458888899999999999


Q ss_pred             CCCCeEEEEeeeCC
Q 021511          279 KQLHGIFVWSADDS  292 (311)
Q Consensus       279 ~~~~Gvm~W~~~~d  292 (311)
                      +++||||+|+++++
T Consensus       240 ~~~gGvm~W~~~~~  253 (253)
T cd06544         240 GSLPGVFIWNADDS  253 (253)
T ss_pred             CCCCeEEEEecCCC
Confidence            99999999999874

>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes	Back alignment and domain information

>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii	Back alignment and domain information

>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD)	Back alignment and domain information

>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	Back alignment and domain information

>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster	Back alignment and domain information

>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas	Back alignment and domain information

>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases	Back alignment and domain information

>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit	Back alignment and domain information

>smart00636 Glyco_18 Glycosyl hydrolase family 18	Back alignment and domain information

>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain	Back alignment and domain information

>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome	Back alignment and domain information

>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods	Back alignment and domain information

>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination	Back alignment and domain information

>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins	Back alignment and domain information

>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes	Back alignment and domain information

>COG3469 Chitinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain	Back alignment and domain information

>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain	Back alignment and domain information

>COG3858 Predicted glycosyl hydrolase [General function prediction only]	Back alignment and domain information

>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins	Back alignment and domain information

>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function	Back alignment and domain information

>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function	Back alignment and domain information

>PF13200 DUF4015: Putative glycosyl hydrolase domain	Back alignment and domain information

>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3	Back alignment and domain information

>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type	Back alignment and domain information

>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13	Back alignment and domain information

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain	Back alignment and domain information

>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6	Back alignment and domain information

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA	Back alignment and domain information

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase	Back alignment and domain information

>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B	Back alignment and domain information

>PRK14582 pgaB outer membrane N-deacetylase; Provisional	Back alignment and domain information

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		311
3sim_A		275	Crystallographic Structure Analysis Of Family 18 Ch		5e-84
1nar_A		290	Crystal Structure Of Narbonin Refined At 1.8 Angstr		1e-38

>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus Length = 275

Back alignment and structure

Iteration: 1

Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 160/276 (57%), Positives = 201/276 (72%), Gaps = 6/276 (2%) Query: 38 LFREYIGAE-FNNVKFTDVPINSNV-EFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNL 95 LF EYIG F+ VKF+DVPIN ++ +F ++LSFA+DY SS + TNGKFNVFWD+ L Sbjct: 2 LFVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSIL 61 Query: 96 SPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDG 155 P Q+SAIK+ H NV+VA+SLGG SV S V F +SVD+WVSNAV SLT II+ YNLDG Sbjct: 62 GPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDG 121 Query: 156 IDIDYEHFQ-ADPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGDL 214 IDIDYEHFQ D NTFAECIGRLI TLKKNG ISFASI+P+ V +YLAL+ Y + Sbjct: 122 IDIDYEHFQNTDKNTFAECIGRLITTLKKNGVISFASISPF--PSVDEYYLALFNEYKNA 179 Query: 215 IDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSF-ISDGSGGLAPGDGFFTACS 273 I+++N+QF AY TSV +F+ Y+ +S YKGG VL+SF GGL GFF A + Sbjct: 180 INHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAAT 239 Query: 274 RLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLAA 309 LK++ +LHGI VW+AD SK + FRYE+++QA L + Sbjct: 240 SLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFLVS 275

PyMOL of 3sim

>pdb|1NAR|A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution Length = 290

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		311
3sim_A		275	Protein, family 18 chitinase; family 18 plant chit	2e-92
1nar_A		290	Narbonin; plant SEED protein; 1.80A {Vicia narbone	3e-87
2y8v_A		290	CHIC, class III chitinase, putative; afchic, hydro	1e-29
1eok_A		290	Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b	1e-29
2hvm_A		273	Hevamine; hydrolase, chitinase/lysozyme; 1.80A {He	5e-26
2gsj_A		271	Protein PPL-2; mimosoideae, chimerolectin, endochi	2e-19
3mu7_A		273	XAIP-II, xylanase and alpha-amylase inhibitor prot	7e-18
1ta3_A		274	XIP-1, xylanase inhibitor protein I; beta alpha ba	8e-17
3ebv_A		302	Chinitase A; chitinase A, CHIA, glycosidase, struc	2e-16
3ian_A		321	Chitinase; structural genomics, hydrolase, glycosi	2e-16
3n12_A		333	Chitinase A, chinctu2; zinc atoms, complex, hydrol	2e-13
1cnv_A		299	Concanavalin B; plant chitinase, chitin binding pr	2e-13
2uy2_A		294	Endochitinase; carbohydrate metabolism, polysaccha	4e-13
1edt_A		271	Endo-beta-N-acetylglucosaminidase H, endo H; hydro	8e-13
2dsk_A		311	Chitinase; catalytic domain, active domain, crysta	6e-11
2ebn_A		289	Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl	3e-10
1vf8_A		377	YM1, secretory protein; chitinase, CHI-lectin, str	1e-09
1goi_A		499	Chitinase B; chitin degradation, hydrolase, glycos	3e-09
3fnd_A		312	Chitinase; TIM-barrel, structural genomics, PSI-2,	3e-09
1jnd_A		420	Imaginal DISC growth factor-2; IDGF, chitinase, in	8e-09
4ay1_A		365	Chitinase-3-like protein 2; chilectin, lectin, chi	1e-08
3qok_A		420	Putative chitinase II; structural genomics, PSI-bi	2e-08
3fy1_A		395	Amcase, TSA1902, acidic mammalian chitinase; struc	2e-08
2pi6_A		361	Chitinase-3-like protein 1; complex, signaling pro	2e-08
1wb0_A		445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	5e-08
3poh_A		451	Endo-beta-N-acetylglucosaminidase F1; TIM barrel,	6e-08
3aqu_A		356	AT4G19810; stress response, TIM barrel, hydrolase,	1e-07
3g6m_A		406	Chitinase, crchi1; inhibitor, caffeine, glycosidas	3e-07
3alf_A		353	Chitinase, class V; hydrolase; 1.20A {Nicotiana ta	3e-07
1w9p_A		433	Chitinase; peptide inhibitors, argifin, argadin, g	4e-07
3cz8_A		319	Putative sporulation-specific glycosylase YDHD; st	4e-07
1ll7_A		392	Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {	5e-07
1itx_A		419	Chitinase A1, glycosyl hydrolase; alpha-beta (TIM)	7e-07
3bxw_B		393	Chitinase domain-containing protein 1; TIM barrel,	1e-06
2xtk_A		310	CHIA1, class III chitinase CHIA1; hydrolase, GH18;	2e-06
3oa5_A		574	CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yers	3e-06
3arx_A		584	Chitinase A; TIM barrel, inhibitor complex, glycos	8e-06
1edq_A		540	Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1	4e-05
1kfw_A		435	Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrob	2e-04

>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus} Length = 275	Back alignment and structure

 Score =  274 bits (703), Expect = 2e-92
 Identities = 160/277 (57%), Positives = 202/277 (72%), Gaps = 6/277 (2%)

Query: 37  NLFREYIG-AEFNNVKFTDVPINSNV-EFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGN 94
            LF EYIG   F+ VKF+DVPIN ++ +F ++LSFA+DY  SS  + TNGKFNVFWD+  
Sbjct: 1   TLFVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSI 60

Query: 95  LSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLD 154
           L P Q+SAIK+ H NV+VA+SLGG SV S  V F  +SVD+WVSNAV SLT II+ YNLD
Sbjct: 61  LGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLD 120

Query: 155 GIDIDYEHFQA-DPNTFAECIGRLIKTLKKNGAISFASIAPYDDDQVQSHYLALWKSYGD 213
           GIDIDYEHFQ  D NTFAECIGRLI TLKKNG ISFASI+P+    V  +YLAL+  Y +
Sbjct: 121 GIDIDYEHFQNTDKNTFAECIGRLITTLKKNGVISFASISPF--PSVDEYYLALFNEYKN 178

Query: 214 LIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG-SGGLAPGDGFFTAC 272
            I+++N+QF AY   TSV +F+ Y+   +S YKGG VL+SF +    GGL    GFF A 
Sbjct: 179 AINHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAA 238

Query: 273 SRLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLAA 309
           + LK++ +LHGI VW+AD SK + FRYE+++QA L +
Sbjct: 239 TSLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFLVS 275

PyMOL of 3sim

>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5 Length = 290	Back alignment and structure

>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus} Length = 290	Back alignment and structure

>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A* Length = 290	Back alignment and structure

>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis} SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A* 1kqy_A* 1kqz_A* Length = 273	Back alignment and structure

>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl hydrolase family 18, equilibrium sedimentation, X-RAY; 1.73A {Parkia platycephala} Length = 271	Back alignment and structure

>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A* 3d5h_A* Length = 273	Back alignment and structure

>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Triticum aestivum} SCOP: c.1.8.5 PDB: 1om0_A* 1te1_A* Length = 274	Back alignment and structure

>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor} Length = 302	Back alignment and structure

>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp} Length = 321	Back alignment and structure

>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A* Length = 333	Back alignment and structure

>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5 Length = 299	Back alignment and structure

>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation, glycopr chitin-binding, chitin degradation, CAZY, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A* 2uy4_A* 2uy5_A* Length = 294	Back alignment and structure

>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A Length = 271	Back alignment and structure

>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A Length = 311	Back alignment and structure

>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 Length = 289	Back alignment and structure

>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity, functional versatility, immune system; 1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A Length = 377	Back alignment and structure

>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1 PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A* 1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A* 1ogb_A 1ogg_A* 1e6z_A* 1ur9_A* Length = 499	Back alignment and structure

>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A Length = 312	Back alignment and structure

>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep heparin, hormone-growth factor complex; HET: NAG BMA MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1 PDB: 1jne_A* Length = 420	Back alignment and structure

>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens} Length = 365	Back alignment and structure

>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycosyl hydrolases family 18; 2.60A {Klebsiella pneumoniae subsp} Length = 420	Back alignment and structure

>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A* Length = 395	Back alignment and structure

>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ... Length = 361	Back alignment and structure

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445	Back alignment and structure

>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron} Length = 451	Back alignment and structure

>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET: FLC; 2.01A {Arabidopsis thaliana} Length = 356	Back alignment and structure

>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria ochroleuca} PDB: 3g6l_A* Length = 406	Back alignment and structure

>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB: 3alg_A* Length = 353	Back alignment and structure

>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase, hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5 d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A* 2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A* 1wno_A* Length = 433	Back alignment and structure

>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp} Length = 319	Back alignment and structure

>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A Length = 392	Back alignment and structure

>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1 Length = 419	Back alignment and structure

>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens} Length = 393	Back alignment and structure

>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A {Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A* Length = 310	Back alignment and structure

>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A Length = 574	Back alignment and structure

>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase, hydro hydrolase inhibitor complex; HET: POY; 1.16A {Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A* 3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A* 3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A* 3as3_A* Length = 584	Back alignment and structure

>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A* 2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A* Length = 540	Back alignment and structure

>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1 Length = 435	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		311
3sim_A		275	Protein, family 18 chitinase; family 18 plant chit	100.0
1nar_A		290	Narbonin; plant SEED protein; 1.80A {Vicia narbone	100.0
3ebv_A		302	Chinitase A; chitinase A, CHIA, glycosidase, struc	100.0
3n12_A		333	Chitinase A, chinctu2; zinc atoms, complex, hydrol	100.0
4ac1_X		283	Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, g	100.0
4ay1_A		365	Chitinase-3-like protein 2; chilectin, lectin, chi	100.0
2y8v_A		290	CHIC, class III chitinase, putative; afchic, hydro	100.0
3g6m_A		406	Chitinase, crchi1; inhibitor, caffeine, glycosidas	100.0
3fy1_A		395	Amcase, TSA1902, acidic mammalian chitinase; struc	100.0
3ian_A		321	Chitinase; structural genomics, hydrolase, glycosi	100.0
3qok_A		420	Putative chitinase II; structural genomics, PSI-bi	100.0
1itx_A		419	Chitinase A1, glycosyl hydrolase; alpha-beta (TIM)	100.0
1wb0_A		445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	100.0
1kfw_A		435	Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrob	100.0
2hvm_A		273	Hevamine; hydrolase, chitinase/lysozyme; 1.80A {He	100.0
1vf8_A		377	YM1, secretory protein; chitinase, CHI-lectin, str	100.0
1w9p_A		433	Chitinase; peptide inhibitors, argifin, argadin, g	100.0
2uy2_A		294	Endochitinase; carbohydrate metabolism, polysaccha	100.0
1ll7_A		392	Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {	100.0
2pi6_A		361	Chitinase-3-like protein 1; complex, signaling pro	100.0
1jnd_A		420	Imaginal DISC growth factor-2; IDGF, chitinase, in	100.0
2gsj_A		271	Protein PPL-2; mimosoideae, chimerolectin, endochi	100.0
4axn_A		328	Chitinase C1; hydrolase; 1.68A {Serratia marcescen	100.0
1edq_A		540	Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1	100.0
3fnd_A		312	Chitinase; TIM-barrel, structural genomics, PSI-2,	100.0
3aqu_A		356	AT4G19810; stress response, TIM barrel, hydrolase,	100.0
3arx_A		584	Chitinase A; TIM barrel, inhibitor complex, glycos	100.0
3alf_A		353	Chitinase, class V; hydrolase; 1.20A {Nicotiana ta	100.0
1goi_A		499	Chitinase B; chitin degradation, hydrolase, glycos	100.0
1cnv_A		299	Concanavalin B; plant chitinase, chitin binding pr	100.0
1ta3_A		274	XIP-1, xylanase inhibitor protein I; beta alpha ba	100.0
3oa5_A		574	CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yers	100.0
3mu7_A		273	XAIP-II, xylanase and alpha-amylase inhibitor prot	100.0
2xtk_A		310	CHIA1, class III chitinase CHIA1; hydrolase, GH18;	100.0
3cz8_A		319	Putative sporulation-specific glycosylase YDHD; st	100.0
3bxw_B		393	Chitinase domain-containing protein 1; TIM barrel,	100.0
1eok_A		290	Endo-beta-N-acetylglucosaminidase F3; alpha/beta-b	100.0
1edt_A		271	Endo-beta-N-acetylglucosaminidase H, endo H; hydro	99.98
2ebn_A		289	Endo-beta-N-acetylglucosaminidase F1; hydrolase(gl	99.94
2dsk_A		311	Chitinase; catalytic domain, active domain, crysta	99.92
3poh_A		451	Endo-beta-N-acetylglucosaminidase F1; TIM barrel,	99.81
2vtf_A		626	Endo-beta-N-acetylglucosaminidase; hydrolase, fami	96.57
2w91_A		653	Endo-beta-N-acetylglucosaminidase D; hydrolase, N-	95.74
1fob_A		334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	95.61
1hjs_A		332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	95.25
1ur4_A		399	Galactanase; hydrolase, beta-1, glycoside hydrolas	94.46
3civ_A		343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	91.9
2aam_A		309	Hypothetical protein TM1410; structural genomics,	91.76
4ekj_A		500	Beta-xylosidase; TIM-barrel fold, hemicellulase, h	89.42
2nt0_A		497	Glucosylceramidase; cerezyme, glucocerebrosidase,	88.39
3vmn_A		643	Dextranase; TIM barrel, immunoglobrin fold, greek-	85.96
3zr5_A		656	Galactocerebrosidase; hydrolase, GALC, glycosyl hy	83.73
2dh2_A		424	4F2 cell-surface antigen heavy chain; TIM-barrel,	81.8
2wnw_A		447	Activated by transcription factor SSRB; hydrolase,	80.4

>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}	Back alignment and structure

Probab=100.00  E-value=2.9e-56  Score=395.24  Aligned_cols=269  Identities=59%  Similarity=1.017  Sum_probs=237.5

Q ss_pred             eEEEEee-eeecccccccccCCCCe-eEEEEEEEeeecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCcEEEEE
Q 021511           38 LFREYIG-AEFNNVKFTDVPINSNV-EFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNVKVALS  115 (311)
Q Consensus        38 vv~~Y~~-~~~~~~~~~~~~i~~~~-~Thii~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~kvlls  115 (311)
                      ++.-|.+ ......++++++|++.+ ||||||+|+++.++.+...+.++.|..+|+++...++++..+|+++|++|||||
T Consensus         2 ~~~~~~~~~~~~~~~~~d~pid~~l~ctHliyaFai~~~~~~~~~~~~g~~~~~w~~~~~~~~~~~~lK~~~~~lKvllS   81 (275)
T 3sim_A            2 LFVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILGPDQISAIKSSHPNVRVAVS   81 (275)
T ss_dssp             EEEEEESCSTTCCCCGGGSCCCTTCSEEEEEEEEEESBCSSSSCCBCTTCCEECSCTTTSCHHHHHHHHHHCTTEEEEEE
T ss_pred             chHHhccccccCCCCCccCCCCCCccccEEEEEEEecccCccccCCCCCccccccccccccHHHHHHHHHhCCCCEEEEE
Confidence            5678888 66778899999999999 999999999665655533466888989998887779999999999999999999


Q ss_pred             ECCCCCCCCceecCCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCC-CChhhHHHHHHHHHHHHhhCCCeEEEEeCC
Q 021511          116 LGGDSVSSGKVYFNPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQ-ADPNTFAECIGRLIKTLKKNGAISFASIAP  194 (311)
Q Consensus       116 iGG~~~~~~~~~~~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~-~d~~~~~~~l~~Lr~~l~~~~~~~~a~~~p  194 (311)
                      ||||+.+...+..+++++++.|++|++++++++++|||||||||||+|. +|+++|+.|++|||++|++++++++++++|
T Consensus        82 iGG~~~~~~~~~~~~~~~~~~r~~fi~si~~~l~~~gfDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~~~ls~a~~~p  161 (275)
T 3sim_A           82 LGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDKNTFAECIGRLITTLKKNGVISFASISP  161 (275)
T ss_dssp             EECSEETTEECCCCCSCHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTSCHHHHHHHHHHHHHHHHHTTSCSEEEECC
T ss_pred             EcCCCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhCCCeEEEEeecCCcccHHHHHHHHHHHHHHhccCCeEEEEEcCC
Confidence            9999876533345677889999999999999999999999999999995 788999999999999999988888888888


Q ss_pred             CCCchhhhhHHHHHHhhCCeeeEEEecccCCCCCCCHHHHHHHHHHhhcCCCCCcEEEceecCC-CCCCCChhhHHHHHH
Q 021511          195 YDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFISDG-SGGLAPGDGFFTACS  273 (311)
Q Consensus       195 ~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~~~~~~~~~~~~~~~~~~p~~KivlG~p~~~-~~g~~~~~~~~~~~~  273 (311)
                      .  ......|.+.+.+++|+|++|+||+|++++.++++..+++|.+++.++|++||+||+|+++ ++++.++..+.+++.
T Consensus       162 ~--~~~~~~~~~~~~~~~D~i~vm~YD~~~~~~~~~~~~~v~~~~~~g~~~p~~KlvlGlpa~~~~~g~~~~~~~~~~l~  239 (275)
T 3sim_A          162 F--PSVDEYYLALFNEYKNAINHINYQFKAYDSSTSVDKFLGYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAAT  239 (275)
T ss_dssp             C--GGGHHHHHHHHHHSGGGCCEEECCGGGSCTTCCHHHHHHHHHHHHHHTTTSCEEEEEECSSSCCSSCTTTTHHHHHH
T ss_pred             h--HHhhhccHHHHHHhCCEEEEEeccCCCCCCCccHHHHHHHHHHHhccCChhheEEEEeecCCCCCcCChHHHHHHHH
Confidence            6  3345566788899999999999999988877889999999999877779999999999997 566666788899999


Q ss_pred             HHhcCCCCCeEEEEeeeCCCCCCceechhHHHHHh
Q 021511          274 RLKSQKQLHGIFVWSADDSKKNGFRYEKQSQALLA  308 (311)
Q Consensus       274 ~~~~~~~~~Gvm~W~~~~d~~~~~~~~~~~~~~l~  308 (311)
                      .+++.+++||||+|+++++..++|+|+++++++|.
T Consensus       240 ~~k~~~~~gGVmlW~a~~s~~~~f~~~~~~~~~l~  274 (275)
T 3sim_A          240 SLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFLV  274 (275)
T ss_dssp             HHHHTTCCCCEEEECHHHHGGGTTHHHHHHHHHHH
T ss_pred             HHHhCCCCCcEEEEecCCcccCCceeeHHHHHhhc
Confidence            99999999999999999999999999999999996

PyMOL of 3sim

>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5	Back alignment and structure

>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics, unknown function, hydrolase, PSI-2, protein structure initiative; 1.50A {Streptomyces coelicolor}	Back alignment and structure

>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A {Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A* 3n18_A* 3n1a_A*	Back alignment and structure

>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina}	Back alignment and structure

>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}	Back alignment and structure

>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus}	Back alignment and structure

>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria ochroleuca} PDB: 3g6l_A*	Back alignment and structure

>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A*	Back alignment and structure

>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 1.75A {Lactococcus lactis subsp}	Back alignment and structure

>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycosyl hydrolases family 18; 2.60A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1	Back alignment and structure

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*	Back alignment and structure

>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1	Back alignment and structure

>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis} SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A* 1kqy_A* 1kqz_A*	Back alignment and structure

>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity, functional versatility, immune system; 1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A	Back alignment and structure

>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase, hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5 d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A* 2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A* 1wno_A*	Back alignment and structure

>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation, glycopr chitin-binding, chitin degradation, CAZY, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A* 2uy4_A* 2uy5_A*	Back alignment and structure

>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A* 1ll6_A	Back alignment and structure

>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...	Back alignment and structure

>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep heparin, hormone-growth factor complex; HET: NAG BMA MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1 PDB: 1jne_A*	Back alignment and structure

>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl hydrolase family 18, equilibrium sedimentation, X-RAY; 1.73A {Parkia platycephala}	Back alignment and structure

>4axn_A Chitinase C1; hydrolase; 1.68A {Serratia marcescens}	Back alignment and structure

>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A* 1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A* 2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*	Back alignment and structure

>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A	Back alignment and structure

>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET: FLC; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase, hydro hydrolase inhibitor complex; HET: POY; 1.16A {Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A* 3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A* 3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A* 3as3_A*	Back alignment and structure

>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB: 3alg_A*	Back alignment and structure

>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1 PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A* 1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A* 1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*	Back alignment and structure

>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5	Back alignment and structure

>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Triticum aestivum} SCOP: c.1.8.5 PDB: 1om0_A* 1te1_A*	Back alignment and structure

>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A	Back alignment and structure

>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell, amylase/xylanase inhibitory protein, hydrolase I; 1.29A {Scadoxus multiflorus} SCOP: c.1.8.0 PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A* 3d5h_A*	Back alignment and structure

>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A {Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*	Back alignment and structure

>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp}	Back alignment and structure

>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens}	Back alignment and structure

>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase; 1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB: 1eom_A*	Back alignment and structure

>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A	Back alignment and structure

>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5	Back alignment and structure

>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A* 3a4x_A* 3afb_A	Back alignment and structure

>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural genomics, joint center for structural genomics, JCSG; 1.55A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*	Back alignment and structure

>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*	Back alignment and structure

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A	Back alignment and structure

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*	Back alignment and structure

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*	Back alignment and structure

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}	Back alignment and structure

>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15	Back alignment and structure

>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}	Back alignment and structure

>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...	Back alignment and structure

>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*	Back alignment and structure

>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*	Back alignment and structure

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A	Back alignment and structure

>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		311
d1nara_		289	c.1.8.5 (A:) Seed storage protein {Vicia narbonens	2e-69
d1eoka_		282	c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Fl	2e-23
d1cnva_		283	c.1.8.5 (A:) Seed storage protein {Jack bean (Cana	1e-22
d2hvma_		273	c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para	3e-22
d1ta3a_		274	c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {	1e-21
d1jnda1		327	c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth f	6e-11
d1itxa1		347	c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillu	4e-10
d1vf8a1		302	c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin	1e-09
d1edta_		265	c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {St	6e-09
d1goia2		356	c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic	1e-08
d2pi6a1		292	c.1.8.5 (A:1-239,A:308-361) Signal processing prot	3e-08
d1wb0a1		297	c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Huma	1e-07
d2ebna_		285	c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Fl	1e-07
d1edqa2		358	c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalyt	8e-07
d1ll7a1		330	c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus (	3e-05
d1kfwa1		374	c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitina	0.002

>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis, Narbonin [TaxId: 3912]} Length = 289	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Seed storage protein
species: Vicia narbonensis, Narbonin [TaxId: 3912]

 Score =  215 bits (549), Expect = 2e-69
 Identities = 102/294 (34%), Positives = 140/294 (47%), Gaps = 30/294 (10%)

Query: 38  LFREYIGAEFNNVKFTDVPIN----SNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTG 93
           +FREYIG + N+    D P        +EFHYIL FAI+           G F   WD  
Sbjct: 4   IFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESY--YESGKGTGTFEESWDVE 61

Query: 94  NLSPSQVSAIKNRHSNVKVALSLGGDSVSSGKVYFNPSSVDTWVSNAVASLTSII----- 148
              P +V  +K RH  VKV +S+GG         F+P+  + WVSNA  SL  II     
Sbjct: 62  LFGPEKVKNLKRRHPEVKVVISIGG---RGVNTPFDPAEENVWVSNAKESLKLIIQKYSD 118

Query: 149 -KEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNGA--ISFASIAPYDDDQVQSHYL 205
                +DGIDI YEH +     FA  +G+LI  LKK+    I+  SIAP +++   SHY 
Sbjct: 119 DSGNLIDGIDIHYEHIR-SDEPFATLMGQLITELKKDDDLNINVVSIAPSENN--SSHYQ 175

Query: 206 ALWKSYGDLIDYVNFQFY-AYAQGTSVSQFMDYFKTQSSNYKGGKVLVSFIS---DGSGG 261
            L+ +  D I++V++QF       ++   F++ FK+   +Y   KVL  F +   D    
Sbjct: 176 KLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHN 235

Query: 262 LAPGDGFFTACSRLKSQKQLHGIFVWSADDSK------KNGFRYEKQSQALLAA 309
               D F   C+RL     L G+F W+A+DS          F  E   Q LLAA
Sbjct: 236 KITRDIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAA 289

PyMOL of d1nara_

>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]} Length = 282	Back information, alignment and structure

>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]} Length = 283	Back information, alignment and structure

>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]} Length = 273	Back information, alignment and structure

>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 274	Back information, alignment and structure

>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 327	Back information, alignment and structure

>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]} Length = 347	Back information, alignment and structure

>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 302	Back information, alignment and structure

>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]} Length = 265	Back information, alignment and structure

>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} Length = 356	Back information, alignment and structure

>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]} Length = 292	Back information, alignment and structure

>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]} Length = 297	Back information, alignment and structure

>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]} Length = 285	Back information, alignment and structure

>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} Length = 358	Back information, alignment and structure

>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]} Length = 330	Back information, alignment and structure

>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} Length = 374	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		311
d1nara_		289	Seed storage protein {Vicia narbonensis, Narbonin	100.0
d1w9pa1		333	Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}	100.0
d1itxa1		347	Chitinase A1 {Bacillus circulans [TaxId: 1397]}	100.0
d1edqa2		358	Chitinase A, catalytic domain {Serratia marcescens	100.0
d2pi6a1		292	Signal processing protein (SPC-40, MGP-40) {Sheep	100.0
d1wb0a1		297	Chitotriosidase {Human (Homo sapiens) [TaxId: 9606	100.0
d1vf8a1		302	Chitinase-like lectin ym1, saccharide binding doma	100.0
d1kfwa1		374	Psychrophilic chitinase B {Arthrobacter sp., tad20	100.0
d1ll7a1		330	Chitinase 1 {Fungus (Coccidioides immitis) [TaxId:	100.0
d1jnda1		327	Imaginal disc growth factor-2 {Fruit fly (Drosophi	100.0
d2hvma_		273	Hevamine A (chitinase/lysozyme) {Para rubber tree	100.0
d1ta3a_		274	Xylanase inhibitor protein I, XIP-I {Wheat (Tritic	100.0
d1goia2		356	Chitinase B, catalytic domain {Serratia marcescens	100.0
d1cnva_		283	Seed storage protein {Jack bean (Canavalia ensifor	100.0
d1edta_		265	Endo-beta-N-acetylglucosaminidase {Streptomyces pl	99.96
d2ebna_		285	Endo-beta-N-acetylglucosaminidase {Flavobacterium	99.94
d1eoka_		282	Endo-beta-N-acetylglucosaminidase {Flavobacterium	99.93
d1foba_		334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	96.01
d2aama1		285	Hypothetical protein TM1410 {Thermotoga maritima [	95.09
d2nt0a2		354	Glucosylceramidase, catalytic domain {Human (Homo	93.83
d1hjsa_		332	Beta-1,4-galactanase {Thielavia heterothallica, ak	88.8
d1ur4a_		387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	88.06

>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis, Narbonin [TaxId: 3912]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Seed storage protein
species: Vicia narbonensis, Narbonin [TaxId: 3912]

Probab=100.00  E-value=2.2e-47  Score=338.25  Aligned_cols=269  Identities=35%  Similarity=0.545  Sum_probs=213.1

Q ss_pred             CCCeEEEEeeeeecccccccccCC----CCeeEEEEEEEeeecCCCCCCCCCCCccccccCCCCCCHHHHHHHHhhCCCc
Q 021511           35 SSNLFREYIGAEFNNVKFTDVPIN----SNVEFHYILSFAIDYDTSSSPSPTNGKFNVFWDTGNLSPSQVSAIKNRHSNV  110 (311)
Q Consensus        35 ~~~vv~~Y~~~~~~~~~~~~~~i~----~~~~Thii~~fa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~~~~g~  110 (311)
                      ++|+++.|++.+....++++.+.+    ..+|+|+||+|+++.+...  .+.++.|.+.|+.....++++++||+++|++
T Consensus         1 ~~~~~r~Y~g~~~~~~~~~d~p~~~~~~~~~~~h~i~aFa~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~lK~~~~~~   78 (289)
T d1nara_           1 PKPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYES--GKGTGTFEESWDVELFGPEKVKNLKRRHPEV   78 (289)
T ss_dssp             CCCEEEEEESCCTTCCSCSSCCSTTCCCSSSEEEEEEEEEEEEECTT--SCEEEEEEECSCHHHHSHHHHHHHHHHCTTC
T ss_pred             CCcchhhhcCCCCCCCccccCChhhcCCCceEEEEEEecccccCCCC--CCCCCeeccccccccccHHHHHHHHHHCCCC
Confidence            468999999976666666655432    3468899999995433222  2346678888887666789999999999999


Q ss_pred             EEEEEECCCCCCCCceec---CCCchhHHHHHHHHHHHHHHHHcCCCeEEeecCCCCCChhhHHHHHHHHHHHHhhCC--
Q 021511          111 KVALSLGGDSVSSGKVYF---NPSSVDTWVSNAVASLTSIIKEYNLDGIDIDYEHFQADPNTFAECIGRLIKTLKKNG--  185 (311)
Q Consensus       111 kvllsiGG~~~~~~~~~~---~~~~~~~~~~~~i~si~~~~~~~g~DGiDiD~E~~~~d~~~~~~~l~~Lr~~l~~~~--  185 (311)
                      |||||||||+.+..+-..   ...+....|.+|+.++.+++++++|||||||||+|. +.++|+.|++|||++|++.+  
T Consensus        79 KvllSiGG~~~~~~f~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~DGiDiDwE~p~-~~~~~~~ll~~Lr~~l~~~~~~  157 (289)
T d1nara_          79 KVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIR-SDEPFATLMGQLITELKKDDDL  157 (289)
T ss_dssp             EEEEEEEESSTTSCBCBSCHHHHHHHHHHHHHHHHHHSEETTEECCCEEEEEESCBC-SSTTHHHHHHHHHHHHHHCTTS
T ss_pred             eEEEEecCCCCCCccChhhhHHHHhCHHHHHHHHHHHHHHHHhcCCCceeeeeeecC-CHHHHHHHHHHHHHHHhhCCCc
Confidence            999999999987643111   012334556788999999999999999999999984 45799999999999998865  


Q ss_pred             CeEEEEeCCCCCchhhhhHHHHHHhhCCeeeEEEecccCCCCC-CCHHHHHHHHHHhhcCCCCCcEEEceecCC---CCC
Q 021511          186 AISFASIAPYDDDQVQSHYLALWKSYGDLIDYVNFQFYAYAQG-TSVSQFMDYFKTQSSNYKGGKVLVSFISDG---SGG  261 (311)
Q Consensus       186 ~~~~a~~~p~~~~~~~~~y~~~~~~~~d~id~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~p~~KivlG~p~~~---~~g  261 (311)
                      .+++++.+|...  ....|.+++.+++|+||+|+||+|+.|.. ++.+..+..|..+..++|++||++|+|+++   .+|
T Consensus       158 ~~~~~~~ap~~~--~~~~~~~~~~~~~D~in~m~ydfyg~w~~~~g~~~~~~~~~~~~~~~p~~Kv~lG~pa~~~~~~~g  235 (289)
T d1nara_         158 NINVVSIAPSEN--NSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHN  235 (289)
T ss_dssp             CCCEEEECCCTT--THHHHHHHHHHHTTTCCEEEEEGGGCSSCCCSHHHHHHHHHHHHHHSCTTCEEEEEECCHHHHHHC
T ss_pred             EEEEEEecCcCc--cccchHHHHHhhCCEEEEEEEeccCCCCCCCChhHHHHHHHHhhcCCChhheEEeeecchhhhhcC
Confidence            355566666543  33445778889999999999999986654 567777888888888999999999999986   568


Q ss_pred             CCChhhHHHHHHHHhcCCCCCeEEEEeeeCCCC------CCceechhHHHHHh
Q 021511          262 LAPGDGFFTACSRLKSQKQLHGIFVWSADDSKK------NGFRYEKQSQALLA  308 (311)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~Gvm~W~~~~d~~------~~~~~~~~~~~~l~  308 (311)
                      +++++.+...+..+++.+.+||||+|+++++..      +.|.|+..++++|.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~gGvm~W~a~~s~~~~~~g~~~~~y~~~~~~~la  288 (289)
T d1nara_         236 KITRDIFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLA  288 (289)
T ss_dssp             SSCHHHHHHHHHHHHHTTCCCEEEEECHHHHSSCSSTTCCTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCcCeEEEEcCccCcccccCCCcchhHHHHHHHHhc
Confidence            889999999999999999999999999987744      47889999999986

PyMOL of d1nara_

>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus fumigatus [TaxId: 5085]}	Back information, alignment and structure

>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}	Back information, alignment and structure

>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]}	Back information, alignment and structure

>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}	Back information, alignment and structure

>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]}	Back information, alignment and structure

>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus (Coccidioides immitis) [TaxId: 5501]}	Back information, alignment and structure

>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]}	Back information, alignment and structure

>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure

>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}	Back information, alignment and structure

>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia ensiformis), Concanavalin B [TaxId: 3823]}	Back information, alignment and structure

>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]}	Back information, alignment and structure

>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]}	Back information, alignment and structure

>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F3 [TaxId: 238]}	Back information, alignment and structure

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}	Back information, alignment and structure

>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}	Back information, alignment and structure

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}	Back information, alignment and structure