Citrus Sinensis ID: 021525

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
MGDLTESLTPSTTTTTPTSTTPYSRPLPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMDTLIGNNVKPSSNFSPKLSQSQSPPVAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPTATAVALPQKRGYNSEGFYRNYSAVAAAAAAAESEDEEAEEEAEEEENDNVNEENSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKRTKRSGSNDMYS
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
mgdltesltpstttttptsttpysrplpvredcwseeATSTLVDAWGRRYLElnrgnlrqkdWQDVADAVNALHahskkthrtdvqckNRIDTIKKKYKIEKARVvssngtltsswpffermdtlignnvkpssnfspklsqsqsppvavplaYRKSVSVnnsninninnnnnsnslalapiptatavalpqkrgynsegfyrNYSAVAAAAAAAesedeeaeeeaeeeendnvneenSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNkrtkrsgsndmys
mgdltesltpstttttptsttpysrplpvredcWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALhahskkthrtdvqcknridtikkkykiekarvvssngtltsswpFFERMDTLIGNNVKPSSNFSPKLSQSQSPPVAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPTATAVALPQKRGYNSEGFYRNYSAVAAAAAAAESEDEEAEeeaeeeendnvneensgvkRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQvqlernkrtkrsgsndmys
MGDltesltpstttttptsttpysrplpVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMDTLIGNNVKPSSNFSPKLSQSQSPPVAVPLAYRKsvsvnnsninninnnnnsnsLALAPIPTATAVALPQKRGYNSEGFYRNYsavaaaaaaaesedeeaeeeaeeeendnvneenSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKRTKRSGSNDMYS
*******************************DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMDTLIG************************************************************VA*****GYNSEGFYRNYSAVA*************************************AIERFGEVYERV*****************************************************
*************************************ATSTLVDAWGRRYLE****NLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKI***************WPFFERMDTLIG************************************************************************************************************************IERFGEVYERV*********************LEMQRLRMFT**********************
************************RPLPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHA*********VQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMDTLIGNNVKPSS*************VAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPTATAVALPQKRGYNSEGFYRNYSAV******************************SGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQL****************
*******************************DCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSS*GTLTSSWPFFERMDTLIGN************************************************************************************************************ENSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKR***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDLTESLTPSTTTTTPTSTTPYSRPLPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMDTLIGNNVKPSSNFSPKLSQSQSPPVAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPTATAVALPQKRGYNSEGFYRNYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLRQMVELEKQRMQFASDLEMQRLRMFTEMQVQLERNKRTKRSGSNDMYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
224071652290 predicted protein [Populus trichocarpa] 0.897 0.962 0.643 1e-95
224058635302 predicted protein [Populus trichocarpa] 0.909 0.937 0.632 1e-89
356549196312 PREDICTED: uncharacterized protein LOC10 0.839 0.836 0.651 6e-89
147767178304 hypothetical protein VITISV_011968 [Viti 0.877 0.898 0.590 3e-84
255563160382 transcription factor, putative [Ricinus 0.845 0.688 0.592 4e-84
359483740279 PREDICTED: uncharacterized protein LOC10 0.861 0.960 0.582 7e-83
449529118295 PREDICTED: uncharacterized protein LOC10 0.861 0.908 0.571 3e-81
449467025280 PREDICTED: uncharacterized protein LOC10 0.887 0.985 0.562 5e-81
225446617271 PREDICTED: uncharacterized protein LOC10 0.864 0.992 0.495 5e-70
147838982 484 hypothetical protein VITISV_028959 [Viti 0.839 0.539 0.5 6e-68
>gi|224071652|ref|XP_002303549.1| predicted protein [Populus trichocarpa] gi|222840981|gb|EEE78528.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 200/311 (64%), Positives = 232/311 (74%), Gaps = 32/311 (10%)

Query: 1   MGDLTESLTPSTTTTTPTSTTPYSRPLPVREDCWSEEATSTLVDAWGRRYLELNRGNLRQ 60
           MGDL ES     ++ TP STTP+SRPLP+REDCWSEEATSTLVDAWGRRYLELNRGNLRQ
Sbjct: 1   MGDLIES-----SSVTP-STTPHSRPLPIREDCWSEEATSTLVDAWGRRYLELNRGNLRQ 54

Query: 61  KDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFE 120
           KDWQDVADAVNALH H+KKT+RTDVQCKNRIDTIKKKYKIEK+ VVSSNGTLTSSWPFFE
Sbjct: 55  KDWQDVADAVNALHGHTKKTYRTDVQCKNRIDTIKKKYKIEKSHVVSSNGTLTSSWPFFE 114

Query: 121 RMDTLIGNNVKPSSNFSPKLSQSQSPPVAVPL--AYRKSVSVNNSNINNINNNNNSNSLA 178
           R+D LIG+N     N S K   S SPPVA+PL  +YR++  V+++               
Sbjct: 115 RLDALIGSNF----NSSGKKHLSPSPPVALPLPPSYRRTPQVSSTP-------------- 156

Query: 179 LAPIPTATAVALPQKRGY--NSEGFYRNYS---AVAAAAAAAESEDEEAEEEAEEEENDN 233
             P P A AVALPQKR    + + F RNYS   A AAA  +   EDE+ E E  E E   
Sbjct: 157 -PPQPPALAVALPQKRPLPVDDDYFRRNYSAMAAAAAAVESDSEEDEDEEFEGGERERAE 215

Query: 234 VNEENSGVKRLAKAIERFGEVYERVEAEKLRQMVELEKQRMQFASDLEMQRLRMFTEMQV 293
            + E  G+KRLA AIERFGEVYERVE+EKL+QMV+LEKQRM+FA DLEM+R+R+FTE QV
Sbjct: 216 EDVEGEGIKRLALAIERFGEVYERVESEKLKQMVDLEKQRMKFAKDLEMERMRIFTETQV 275

Query: 294 QLERNKRTKRS 304
           QLE+ K+ KR+
Sbjct: 276 QLEKIKKGKRA 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058635|ref|XP_002299577.1| predicted protein [Populus trichocarpa] gi|222846835|gb|EEE84382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549196|ref|XP_003542983.1| PREDICTED: uncharacterized protein LOC100815241 [Glycine max] Back     alignment and taxonomy information
>gi|147767178|emb|CAN64751.1| hypothetical protein VITISV_011968 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563160|ref|XP_002522584.1| transcription factor, putative [Ricinus communis] gi|223538275|gb|EEF39884.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483740|ref|XP_002273017.2| PREDICTED: uncharacterized protein LOC100260025 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449529118|ref|XP_004171548.1| PREDICTED: uncharacterized protein LOC101231641 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449467025|ref|XP_004151226.1| PREDICTED: uncharacterized protein LOC101206812 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225446617|ref|XP_002280689.1| PREDICTED: uncharacterized protein LOC100260870 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838982|emb|CAN72489.1| hypothetical protein VITISV_028959 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
TAIR|locus:2076401321 AT3G58630 [Arabidopsis thalian 0.340 0.330 0.6 1.1e-53
TAIR|locus:2169722249 AT5G05550 [Arabidopsis thalian 0.315 0.393 0.590 2.3e-46
TAIR|locus:2074658249 AT3G11100 [Arabidopsis thalian 0.308 0.385 0.6 9.7e-46
TAIR|locus:2087472443 ASIL2 "Arabidopsis 6B-interact 0.395 0.277 0.496 8.6e-45
TAIR|locus:2014445383 ASIL1 "6B-interacting protein 0.340 0.276 0.491 2.2e-38
TAIR|locus:2091757333 AT3G24490 [Arabidopsis thalian 0.305 0.285 0.362 2.5e-26
TAIR|locus:2096134296 AT3G54390 [Arabidopsis thalian 0.311 0.327 0.390 1.1e-20
TAIR|locus:2100108 542 AT3G10030 [Arabidopsis thalian 0.308 0.177 0.435 1.1e-19
TAIR|locus:2042401372 AT2G44730 [Arabidopsis thalian 0.292 0.244 0.378 3.6e-18
TAIR|locus:2087288310 AT3G24860 [Arabidopsis thalian 0.295 0.296 0.267 2.5e-10
TAIR|locus:2076401 AT3G58630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 349 (127.9 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
 Identities = 69/115 (60%), Positives = 82/115 (71%)

Query:    30 REDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALH--------AHSKKTH 81
             REDCWSEEAT TL+ AWG RY++L+RGNLRQK WQ+VA+AVN  H        A   + +
Sbjct:    22 REDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPY 81

Query:    82 RTDVQCKNRIDTIKKKYKIEKARVVSSN-GTLTSSWPFFERMDTLIGNNVKPSSN 135
             RTDVQCKNRIDT+KKKYK+EKARV  SN G   S WPFF  +D L+  +   SSN
Sbjct:    82 RTDVQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLLRESFPTSSN 136
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2169722 AT5G05550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074658 AT3G11100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087472 ASIL2 "Arabidopsis 6B-interacting protein 1-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014445 ASIL1 "6B-interacting protein 1-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091757 AT3G24490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096134 AT3G54390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042401 AT2G44730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087288 AT3G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 2e-17
smart0059589 smart00595, MADF, subfamily of SANT domain 4e-06
TIGR03685105 TIGR03685, L12P_arch, 50S ribosomal protein L12P 5e-05
PRK06402106 PRK06402, rpl12p, 50S ribosomal protein L12P; Revi 6e-05
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 2e-04
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 3e-04
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 0.001
TIGR03685105 TIGR03685, L12P_arch, 50S ribosomal protein L12P 0.002
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 0.002
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 0.002
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 0.002
cd05833109 cd05833, Ribosomal_P2, Ribosomal protein P2 0.002
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 31  EDCWSEEATSTLVDAWGRRYLELN-RGNLRQKD-WQDVADAVNALHAHSKKTHRTDVQCK 88
            + W++E T  L++ WG R   L  RG  R K  W+++A+ +     +     R+  QCK
Sbjct: 1   RNKWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAERGYN-----RSAEQCK 55

Query: 89  NRIDTIKKKYKIEKARVVSSNGTLTSSWPFFER 121
            +   +KKKYK EK     S     SSWPFFE 
Sbjct: 56  EKWKNLKKKYKKEKESNKGSG----SSWPFFEE 84

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain Back     alignment and domain information
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P Back     alignment and domain information
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 311
KOG4282345 consensus Transcription factor GT-2 and related pr 99.98
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.83
smart0059589 MADF subfamily of SANT domain. 98.83
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.71
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.65
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.33
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.86
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.24
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.19
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.85
PLN03212249 Transcription repressor MYB5; Provisional 95.74
PLN03091 459 hypothetical protein; Provisional 95.45
PLN03212249 Transcription repressor MYB5; Provisional 95.41
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 95.24
PLN03091 459 hypothetical protein; Provisional 93.31
KOG1279506 consensus Chromatin remodeling factor subunit and 91.47
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 90.82
PRK13923170 putative spore coat protein regulator protein YlbO 87.81
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 85.87
PF03353313 Lin-8: Ras-mediated vulval-induction antagonist; I 84.23
KOG0049 939 consensus Transcription factor, Myb superfamily [T 82.89
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=99.98  E-value=7.8e-31  Score=252.28  Aligned_cols=250  Identities=28%  Similarity=0.424  Sum_probs=155.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 021525           31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNG  110 (311)
Q Consensus        31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S~G  110 (311)
                      ..+|+.+||++||++|+++|..|+++++++++|++||..+...     |+.||+.||++||++|+|+||++|.+...+  
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~-----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~--  126 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL-----GYPRSPKQCKAKIENLKKKYKKEKAKKEGS--  126 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHhcccCCC--
Confidence            4899999999999999999999999999999999999988774     689999999999999999999999987643  


Q ss_pred             CCCCCcccchhHHHhhC-CCCCCCCCCCCCCC-CCCCCCCcCcccccccccCCCccccccccCCCCCCCCCCCCCc-ccc
Q 021525          111 TLTSSWPFFERMDTLIG-NNVKPSSNFSPKLS-QSQSPPVAVPLAYRKSVSVNNSNINNINNNNNSNSLALAPIPT-ATA  187 (311)
Q Consensus       111 ~~~s~W~fFd~MD~Llg-~~~~~~~~~~~~~~-~s~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~  187 (311)
                      ...++|+||+.||.|+. .......   ..+. ...+.++.++..+......++....     ...+......+|. -..
T Consensus       127 ~~~s~~~ff~~le~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~  198 (345)
T KOG4282|consen  127 GEGSSWKFFSELEALLITFKARPRS---DEVGPGNASAPLTLSVSSEPQFSSNPTELQ-----FDGSSLEDSSQPSGLNE  198 (345)
T ss_pred             CCCccchHHHHHHHHHhccCCCCCC---CCCCcccccCccccCCCCCCCCCCCccccc-----cCCCcCCCCCcccccCc
Confidence            46799999999999997 2221111   1111 1122233333332100111110000     0000111111110 000


Q ss_pred             ccCcccCCCCCCCCccchhHHHHHHHhhhccchHHHH------HHHHh-hhccccccchhHHHHHHHHHHHHHHHHHHH-
Q 021525          188 VALPQKRGYNSEGFYRNYSAVAAAAAAAESEDEEAEE------EAEEE-ENDNVNEENSGVKRLAKAIERFGEVYERVE-  259 (311)
Q Consensus       188 ~~~~~~r~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~ela~ai~~f~e~yer~E-  259 (311)
                      ....    .....+... +...........+.+.+..      ..... ........+..++++++++.+|+++|+++| 
T Consensus       199 ~~~~----~~~~~~~~~-~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  273 (345)
T KOG4282|consen  199 DNSN----SSSPEPVAG-SLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEE  273 (345)
T ss_pred             cccc----cCCCCCCCc-chhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhc
Confidence            0000    000011100 0000000000000000000      00000 111122335678999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHhhc
Q 021525          260 AEKLRQMVELEKQRMQFA---SDLEMQRLRMFTEMQVQLERNKR  300 (311)
Q Consensus       260 ~~K~~~~~e~Ek~Rme~~---kelE~~r~q~~~~~Q~ei~k~~~  300 (311)
                      ..++++|.++|+.||+++   +|+|++++++++++|++|+.|+.
T Consensus       274 ~~~~~~~~~~e~~r~~~~~r~ke~e~~~~~~~~~~~~~i~~i~~  317 (345)
T KOG4282|consen  274 KKEQERMSEEEKWRMEEIERNKELELARQERIQETQLEIRSIKA  317 (345)
T ss_pred             cchHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998   99999999999999999997765

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.85
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.92
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.67
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.61
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.61
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.75
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.53
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.51
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.46
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.45
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.42
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.41
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.38
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.35
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.27
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.26
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.25
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.17
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.1
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.07
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 96.96
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.9
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.9
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.8
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.47
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.45
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.41
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.39
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.08
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.0
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.0
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.94
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.86
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 95.58
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 95.45
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 95.15
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.11
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.04
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.32
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 94.31
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 91.6
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 89.21
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 84.34
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 82.54
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 80.47
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.85  E-value=1.9e-21  Score=152.32  Aligned_cols=85  Identities=14%  Similarity=0.323  Sum_probs=76.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Q 021525           29 VREDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSS  108 (311)
Q Consensus        29 ~r~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKKrYK~eK~~~~~S  108 (311)
                      .|...||++||.+||++|++...+|..+..+..+|++||+.|.++     ||.+|+.||++||++|++.||++|+++..+
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~-----G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~s   76 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREK-----GFDRSPDMCTDKWRNLLKEFKKAKHHDRGN   76 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHCSCSSCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            467899999999999999999999998887777999999999986     578999999999999999999999998765


Q ss_pred             CCCCCCCcccchh
Q 021525          109 NGTLTSSWPFFER  121 (311)
Q Consensus       109 ~G~~~s~W~fFd~  121 (311)
                       |  ..+|+||+.
T Consensus        77 -G--~~~~~yf~e   86 (86)
T 2ebi_A           77 -G--SAKMSYYKE   86 (86)
T ss_dssp             -C--CCCCCCCCC
T ss_pred             -C--CCCCCCCCc
Confidence             3  349999973
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.89
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.82
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.69
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.54
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.53
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.49
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.42
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.27
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.19
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.09
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.05
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.99
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.98
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 95.37
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.09
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 87.09
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.9e-06  Score=56.83  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhcCCcChHhHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 021525           31 EDCWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHAHSKKTHRTDVQCKNRIDTIKK   96 (311)
Q Consensus        31 ~~~WSe~eT~~LLdaw~ek~~~l~rg~lR~k~W~eVA~~v~~r~g~~~~~~rT~~QCrnKid~LKK   96 (311)
                      ...||.+|...|+++....      |.   ..|..||..+-       ...||+.||++|+.+|+|
T Consensus         2 r~~WT~eED~~L~~~v~~~------G~---~~W~~I~~~~~-------~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYK-------FNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSC-------CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH------CC---CCHHHHHhhcC-------CCCCCHHHHHHHHHHHHC
Confidence            4579999999999998753      21   26999986541       135999999999999986
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure