Citrus Sinensis ID: 021528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHcccccccccEEEEEEccccccEEEEEEEEEcccccccccEEEEEEcccEEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEEccEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEccEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHcHcccccEEEEEcccccccEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEEEEEEccccEEHHHHHHHcccccEEcEEEEEEcccccccEEEEEEEccccEEEEEEEccccHEEEEEEEEccccEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEc
Coil and Loop (DISEMBL)
maglvppgttvkpdastakpkeeekvdymnlpcpipyeeIHREALMSLKPelfeglrfdftkglnqkfslshsvimgpteipsqstetikiptahyefganyidpklMLIGRVLtdgrlnarvkcdlsdnlslkanaqltnephmshgminfdykgkdyrtqfqfgngalfgasyiqnvsphlslggevfwagqhrksGIGYAaryendkmvatGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCrlrgkidsngCAAAYLEERLNMGLNFILSAeidhrkkdykfgfgltvg
Flexible Loop (DISEMBL)
maglvppgttvkpdastakpkeeekvdymnlPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANaqltnephmshGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSaeidhrkkdykfgfgltvg
Low Complexity Region (SEG)
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Disordered region (IsUnstruct)
**************************DYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEI****TETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLT***HMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGL***
Disordered Region (DISOPRED)
****VP****************************IPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTE*****TETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANA*********HGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Disordered Region (DISEMBL)
***********************EKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Disordered Region (DISPRO)
**********************EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q9LHE5	309	Mitochondrial import rece	yes	no	0.990	0.996	0.75	1e-139
Q9SX55	310	Probable mitochondrial im	no	no	0.980	0.983	0.658	1e-121
Q7ZTM6	336	Mitochondrial import rece	N/A	no	0.929	0.860	0.288	7e-29
Q6P825	336	Mitochondrial import rece	yes	no	0.929	0.860	0.276	2e-28
O13656	344	Probable mitochondrial im	yes	no	0.877	0.793	0.298	9e-25
Q9QYA2	361	Mitochondrial import rece	yes	no	0.845	0.728	0.287	2e-24
Q75Q40	361	Mitochondrial import rece	yes	no	0.845	0.728	0.287	2e-24
O96008	361	Mitochondrial import rece	yes	no	0.845	0.728	0.283	9e-24
Q1LZB5	361	Mitochondrial import rece	yes	no	0.845	0.728	0.283	1e-23
Q9CZR3	308	Mitochondrial import rece	no	no	0.929	0.938	0.287	8e-23

>sp|Q9LHE5|TO401_ARATH Mitochondrial import receptor subunit TOM40-1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/312 (75%), Positives = 267/312 (85%), Gaps = 4/312 (1%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           MA L+PP T  + DA T   K +EKVDY NLP P+PYEE+HREALMSLK + FEGLRFDF
Sbjct: 1   MADLLPPLTAAQVDAKT---KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDF 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIPSQSTET-IKIPTAHYEFGANYIDPKLMLIGRVLTDGRL 119
           T+ LNQKFSLSHSV+MGPTE+P+QS ET IKIPTAHYEFGANY DPKL+LIGRV+TDGRL
Sbjct: 58  TRALNQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRL 117

Query: 120 NARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV 179
           NAR+K DL+D L +KANA +TNE HMS  M NFDY G DYR Q Q G  AL GA+YIQ+V
Sbjct: 118 NARLKADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYIQSV 177

Query: 180 SPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLAT 239
           + HLSLGGE+FWAG  RKSGIGYAARYE DKMVA+GQVASTG V ++YVQK+S+KVSLAT
Sbjct: 178 TNHLSLGGEIFWAGVPRKSGIGYAARYETDKMVASGQVASTGAVVMNYVQKISDKVSLAT 237

Query: 240 DLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK 299
           D MYNY SRDVT+SVGYDY+LRQ R+RGKIDSNG A+A LEERL+MGLNF+LSAE+DH+K
Sbjct: 238 DFMYNYFSRDVTASVGYDYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHKK 297

Query: 300 KDYKFGFGLTVG 311
           KDYKFGFGLTVG
Sbjct: 298 KDYKFGFGLTVG 309

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX55|TO402_ARATH Probable mitochondrial import receptor subunit TOM40-2 OS=Arabidopsis thaliana GN=TOM40-2 PE=2 SV=3

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/310 (65%), Positives = 247/310 (79%), Gaps = 5/310 (1%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           M G  PP  T + DA T   K +EKVDY NLPCP+ YEE++REA M+LKPELFEG R D+
Sbjct: 1   MEGFSPPINTAQVDAKT---KLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDY 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIP--SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGR 118
            K LNQKF LSHS++MGPTE+P  + S+E IKIPTA+Y+FGA +IDPKL LIGR+ TDGR
Sbjct: 58  NKSLNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGR 117

Query: 119 LNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQN 178
           LNAR K DL+DN S+KANA LT+E   S G +  DYKG DYRTQ Q GN +++ A+YIQ+
Sbjct: 118 LNARAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQLQLGNNSVYAANYIQH 177

Query: 179 VSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLA 238
           V+PHLSLGGE FW GQ   SG+GYAARYE DK VA+GQ+ASTG+  ++YV K+SEK+S A
Sbjct: 178 VTPHLSLGGEAFWLGQQLMSGVGYAARYETDKTVASGQIASTGVAVMNYVHKVSEKLSFA 237

Query: 239 TDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHR 298
           TD +YNY+SRDVT+SVGYD I RQ RLRGK+DSNG  AAYLEE+L +GL F+LSAE+DH 
Sbjct: 238 TDFIYNYLSRDVTASVGYDLITRQSRLRGKVDSNGVVAAYLEEQLPIGLRFLLSAEVDHV 297

Query: 299 KKDYKFGFGL 308
           KKDYKFGFG+
Sbjct: 298 KKDYKFGFGV 307

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZTM6|TOM40_XENLA Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus laevis GN=tomm40 PE=2 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 160/329 (48%), Gaps = 40/329 (12%)

Query: 5   VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
           VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct: 26  VPPGFTMPPVAGLTPTPDKKEPQEERLPNPGTFEECHRKC-KELFPIQMEGVKLIVNKGL 84

Query: 65  NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
           +  F ++H++        S ST    I  ++Y FGA Y+  K +        L+G     
Sbjct: 85  SNYFQVNHTI--------SLST----IGESNYHFGATYVGTKQLGPAEAFPVLVGDFDNS 132

Query: 117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN------GAL 170
           G LN ++   +++N+  K   Q T +    +  ++ +Y+G+DY      GN        +
Sbjct: 133 GSLNGQIIHQVTNNIRSKIALQ-TQQSKFVNWQLDTEYRGEDYTASVTLGNPDILVGSGI 191

Query: 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVAL 225
             A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY      AT  +   G  A 
Sbjct: 192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRYTAPSWTATLTLGQAGAHA- 247

Query: 226 SYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERL 283
           +Y  K ++++ L  +   +   +D + S+GY   L +  L  +G IDSN    A LE++L
Sbjct: 248 TYYHKANDQLQLGVEFEASARMQDTSVSLGYQLDLPKANLLFKGSIDSNWIVGATLEKKL 307

Query: 284 -NMGLNFILSAEIDHRKKDYKFGFGLTVG 311
             + L   + A ++H+K  ++ GFGLT+G
Sbjct: 308 PPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

Channel-forming protein essential for import of protein precursors into mitochondria.

Xenopus laevis (taxid: 8355)

>sp|Q6P825|TOM40_XENTR Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus tropicalis GN=tomm40 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 158/329 (48%), Gaps = 40/329 (12%)

Query: 5   VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
           VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct: 26  VPPGFTMPPVAGLTPTPDKKETQEDRLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGL 84

Query: 65  NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
           +  F ++H+V +              I  ++Y FGA Y+  K +        L+G +   
Sbjct: 85  SNYFQVNHTVSLS------------MIGESNYHFGATYVGTKQLGPAEAFPVLVGDLDNS 132

Query: 117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN------GAL 170
           G LNA++   ++ N+  K   Q T +    +  ++ +Y+G+D+      GN        +
Sbjct: 133 GSLNAQIIHQVTSNVRSKIALQ-TQQSKFVNWQLDTEYRGEDFTAAVTLGNPDILVGSGI 191

Query: 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVAL 225
             A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY      AT  +   G  A 
Sbjct: 192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRYTAPNWTATLTLGQAGAHA- 247

Query: 226 SYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERL 283
           +Y  K ++++ +  +   +   +D + S GY   L +  L  +G +DSN    A LE++L
Sbjct: 248 TYYHKANDQLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKL 307

Query: 284 -NMGLNFILSAEIDHRKKDYKFGFGLTVG 311
             + L   + A ++H+K  ++ GFGLT+G
Sbjct: 308 PPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

Channel-forming protein essential for import of protein precursors into mitochondria.

Xenopus tropicalis (taxid: 8364)

>sp|O13656|TOM40_SCHPO Probable mitochondrial import receptor subunit tom40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom40 PE=3 SV=3

 Score =  114 bits (285), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 142/322 (44%), Gaps = 49/322 (15%)

Query: 24  EKVDY----MNLPCPIPYEEIHREAL--MSLKPELFEGLRFDFTKGL--NQKFSLSHSVI 75
           EK+D     +NL  P   E + +E    + L    F G+R D TKG   +  F++SH+  
Sbjct: 16  EKIDSYKSSLNLINPGTCENLSKEVSKDILLSNYAFTGVRADVTKGFCTSPWFTVSHAFA 75

Query: 76  MGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKA 135
           +G   +P             Y F   +    L L G V  DG + A + C  + N+  K 
Sbjct: 76  LGSQVLPP------------YSFSTMFGGEPLFLRGSVDNDGAVQAMLNCTWNSNVLSKV 123

Query: 136 NAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-------GALFGASYIQNVSPHLSLGGE 188
             QL+N    +   I  D+KGKD+   F+  N         ++  S +Q+V+P LSLG E
Sbjct: 124 QMQLSNGAVPNMCQIEHDHKGKDFSFSFKAMNPWYEEKLTGIYIISLLQSVTPKLSLGVE 183

Query: 189 VFWAGQHRKSGIG-------YAARYENDKMVATGQV-ASTGMVALSYVQKLSEKVSLATD 240
             W  Q   S IG       Y  RY     +AT  +  S G V  ++ +KLS KV    +
Sbjct: 184 ALW--QKPSSSIGPEEATLSYMTRYNAADWIATAHLNGSQGDVTATFWRKLSPKVEAGVE 241

Query: 241 LMY-----NYMSRDVT-------SSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLN 288
                   N+ +  +T       +SVG  Y   Q   RG++DS G    YLE RL   + 
Sbjct: 242 CQLSPVGLNHSAALMTGPKPEGLTSVGVKYEFAQSIYRGQVDSKGRVGVYLERRLAPAIT 301

Query: 289 FILSAEIDHRKKDYKFGFGLTV 310
              S+E+DH  ++ K G GL++
Sbjct: 302 LAFSSELDHPNRNAKVGLGLSL 323

Channel-forming protein essential for import of protein precursors into mitochondria.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9QYA2|TOM40_MOUSE Mitochondrial import receptor subunit TOM40 homolog OS=Mus musculus GN=Tomm40 PE=1 SV=3

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 40/303 (13%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct: 77  LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALG------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
           + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct: 240 RPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query: 252 SSVGYDYILRQCR--LRGKIDSNGCAAAYLEER-LNMGLNFILSAEIDHRKKDYKFGFGL 308
           +S GY   L +     +G ++SN    A LE++   + L   L A ++HRK  +  GFGL
Sbjct: 299 ASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGL 358

Query: 309 TVG 311
           T+G
Sbjct: 359 TIG 361

Channel-forming protein essential for import of protein precursors into mitochondria.

Mus musculus (taxid: 10090)

>sp|Q75Q40|TOM40_RAT Mitochondrial import receptor subunit TOM40 homolog OS=Rattus norvegicus GN=Tomm40 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 40/303 (13%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct: 77  LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALG------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
           + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct: 240 RPGEKGTVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query: 252 SSVGYDYILRQCR--LRGKIDSNGCAAAYLEER-LNMGLNFILSAEIDHRKKDYKFGFGL 308
           +S GY   L +     +G ++SN    A LE++   + L   L A ++HRK  +  GFGL
Sbjct: 299 ASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGL 358

Query: 309 TVG 311
           T+G
Sbjct: 359 TIG 361

Channel-forming protein essential for import of protein precursors into mitochondria.

Rattus norvegicus (taxid: 10116)

>sp|O96008|TOM40_HUMAN Mitochondrial import receptor subunit TOM40 homolog OS=Homo sapiens GN=TOMM40 PE=1 SV=1

 Score =  111 bits (277), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 40/303 (13%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +              
Sbjct: 77  LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALS------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
           + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct: 240 RPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query: 252 SSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLNMGLNFIL-SAEIDHRKKDYKFGFGL 308
            S GY   L +  L  +G +DSN    A LE++L      +   A ++HRK  ++ GFGL
Sbjct: 299 VSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGL 358

Query: 309 TVG 311
           T+G
Sbjct: 359 TIG 361

Channel-forming protein essential for import of protein precursors into mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q1LZB5|TOM40_BOVIN Mitochondrial import receptor subunit TOM40 homolog OS=Bos taurus GN=TOMM40 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 40/303 (13%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +              
Sbjct: 77  LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALS------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
           + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct: 240 RPGEEGAVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query: 252 SSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLNMGLNFIL-SAEIDHRKKDYKFGFGL 308
            S GY   L +  L  +G +DSN    A LE++L      +   A ++HRK  ++ GFGL
Sbjct: 299 VSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGL 358

Query: 309 TVG 311
           T+G
Sbjct: 359 TIG 361

Channel-forming protein essential for import of protein precursors into mitochondria.

Bos taurus (taxid: 9913)

>sp|Q9CZR3|TM40L_MOUSE Mitochondrial import receptor subunit TOM40B OS=Mus musculus GN=Tomm40l PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 147/323 (45%), Gaps = 34/323 (10%)

Query: 3   GLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTK 62
           GL P GT  +      +P          LP P  ++E+HR     + P   EG++    K
Sbjct: 6   GLAPMGTLPRRSHRREEP----------LPNPGSFDELHR-LCKDVFPAQMEGVKLVVNK 54

Query: 63  GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNAR 122
            L+  F ++H+V M    +P     T       ++     + P +  +G + + G LNA+
Sbjct: 55  VLSSHFQVAHTVHMSALGLPGYHLHTAY--AGDWQLSPTEVFPTV--VGDMDSSGSLNAQ 110

Query: 123 VKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFG------ASYI 176
           V   L++ L  KA  Q T +        + +Y+G DY      GN  L G      A ++
Sbjct: 111 VLLLLAERLRAKAVFQ-TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFL 169

Query: 177 QNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKL 231
           Q+++  L LGGE+ +   HR+ G     +  A +Y     VAT  V S G  A SY  K 
Sbjct: 170 QSITHRLVLGGELVY---HRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHA-SYYHKA 225

Query: 232 SEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLN-MGLN 288
           +E+V +  +   N   +D T S GY   L Q  +  RG +DSN C  A LE+++  + + 
Sbjct: 226 NEQVQVGVEFEANTRLQDTTFSFGYHLTLPQADMVFRGLVDSNWCVGAVLEKKMRPLPVT 285

Query: 289 FILSAEIDHRKKDYKFGFGLTVG 311
             L A ++H +  +  GF +TVG
Sbjct: 286 LALGAFLNHWRNRFHCGFSITVG 308

Potential channel-forming protein implicated in import of protein precursors into mitochondria.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
255544135	308	mitochondrial import receptor subunit to	0.990	1.0	0.864	1e-160
449502259	317	PREDICTED: mitochondrial import receptor	0.942	0.924	0.897	1e-158
225429234	309	PREDICTED: mitochondrial import receptor	0.929	0.935	0.899	1e-157
147797613	309	hypothetical protein VITISV_027855 [Viti	0.929	0.935	0.899	1e-157
449468748	317	PREDICTED: mitochondrial import receptor	0.942	0.924	0.883	1e-156
224127130	316	predicted protein [Populus trichocarpa]	1.0	0.984	0.797	1e-153
224095236	300	predicted protein [Populus trichocarpa]	0.954	0.99	0.842	1e-151
356524630	310	PREDICTED: mitochondrial import receptor	0.922	0.925	0.854	1e-148
240846170	308	Rsdv1 resistance like protein [Glycine m	0.929	0.938	0.848	1e-148
363807184	308	mitochondrial import receptor subunit TO	0.929	0.938	0.844	1e-147

>gi|255544135|ref|XP_002513130.1| mitochondrial import receptor subunit tom40, putative [Ricinus communis] gi|223548141|gb|EEF49633.1| mitochondrial import receptor subunit tom40, putative [Ricinus communis]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/311 (86%), Positives = 288/311 (92%), Gaps = 3/311 (0%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           MAG+VPP TT    +S    +   KVDYM+LPCPIPYEE+HREALMSLKPELFEG+RFDF
Sbjct: 1   MAGIVPPPTTA---SSKTINEVHSKVDYMDLPCPIPYEELHREALMSLKPELFEGMRFDF 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLN 120
           TKGLNQKFSLSHSV MGP E+PSQS+ETIKIPTAHYEFGANYIDPKLML GRVLTDGRLN
Sbjct: 58  TKGLNQKFSLSHSVFMGPMELPSQSSETIKIPTAHYEFGANYIDPKLMLFGRVLTDGRLN 117

Query: 121 ARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVS 180
           ARVKCDL+DNL+LKANAQLTNEPHMSH M NFDYKG DYRTQ Q GNGALFGASYIQ+V+
Sbjct: 118 ARVKCDLTDNLTLKANAQLTNEPHMSHAMFNFDYKGNDYRTQLQLGNGALFGASYIQSVT 177

Query: 181 PHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATD 240
           PHLSLGGEVFWAGQHRKSG+GYAARYE DKMV TGQVASTGMVALSYVQK+SEKVSLATD
Sbjct: 178 PHLSLGGEVFWAGQHRKSGVGYAARYETDKMVGTGQVASTGMVALSYVQKVSEKVSLATD 237

Query: 241 LMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKK 300
           LMYNYMSRDVT+SVGYDYILRQ RLRGKIDSNGCA+A+LEERLNMGLNFILSAE+DH+KK
Sbjct: 238 LMYNYMSRDVTASVGYDYILRQARLRGKIDSNGCASAFLEERLNMGLNFILSAELDHKKK 297

Query: 301 DYKFGFGLTVG 311
           DYKFGFGLTVG
Sbjct: 298 DYKFGFGLTVG 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502259|ref|XP_004161591.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Cucumis sativus]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/293 (89%), Positives = 278/293 (94%)

Query: 19  KPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGP 78
           K  E+EKVDY+NLPCPIPYEEIHREA MSLKPELFEG+RFDFTKGLNQKFSLSHSV MGP
Sbjct: 24  KKTEDEKVDYLNLPCPIPYEEIHREAFMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGP 83

Query: 79  TEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQ 138
           TEIP+QS ETIKIPTA YEFGAN+IDPKLML GR+LTDGRLNARVKCDLSDNL+LKANAQ
Sbjct: 84  TEIPNQSAETIKIPTATYEFGANFIDPKLMLFGRILTDGRLNARVKCDLSDNLTLKANAQ 143

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKS 198
           LTNEPHMSHGM+NFDYKG+D+RTQFQ GNGALFGASYIQ+VSPHLSLGGEVFWAGQHRKS
Sbjct: 144 LTNEPHMSHGMVNFDYKGRDFRTQFQLGNGALFGASYIQSVSPHLSLGGEVFWAGQHRKS 203

Query: 199 GIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDY 258
           GIGYAARY  DKMVATGQVASTGMVALSYVQK+SEKVSLATD  YNYMSRDV SS+GYDY
Sbjct: 204 GIGYAARYNTDKMVATGQVASTGMVALSYVQKVSEKVSLATDFTYNYMSRDVISSLGYDY 263

Query: 259 ILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           ILRQ RLRGKIDSNGC AA+LEERLNMG+NFILSAEIDHRKKDYKFGFGLTVG
Sbjct: 264 ILRQSRLRGKIDSNGCVAAFLEERLNMGVNFILSAEIDHRKKDYKFGFGLTVG 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429234|ref|XP_002264051.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera] gi|296088087|emb|CBI35446.3| unnamed protein product [Vitis vinifera]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/289 (89%), Positives = 279/289 (96%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           +EKVDY++LPCPIPYEEIHREALMSLKPELFEG+RFDFTKGLNQKFSLSHSV MGPTEIP
Sbjct: 20  DEKVDYLDLPCPIPYEEIHREALMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGPTEIP 79

Query: 83  SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           SQS+ETIKIPTAHYEFGAN+IDPKLML GR+LTDGRLNARVKCDL++NL+LKANAQLT+E
Sbjct: 80  SQSSETIKIPTAHYEFGANFIDPKLMLFGRILTDGRLNARVKCDLTENLTLKANAQLTSE 139

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY 202
           PHMSHGM+NFDYKG DYRTQ Q GNGALFGASYIQ+V+P+LSLGGEVFWAGQHRKSGIGY
Sbjct: 140 PHMSHGMVNFDYKGGDYRTQLQLGNGALFGASYIQSVTPYLSLGGEVFWAGQHRKSGIGY 199

Query: 203 AARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ 262
           AARY  DKMVATGQVASTGMVALSYVQK+SEKVSLA+D MYNYMSRDVT+S GYDYILRQ
Sbjct: 200 AARYNTDKMVATGQVASTGMVALSYVQKVSEKVSLASDFMYNYMSRDVTASFGYDYILRQ 259

Query: 263 CRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           CRLRGKIDSNGC AA+LEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Sbjct: 260 CRLRGKIDSNGCTAAFLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797613|emb|CAN64867.1| hypothetical protein VITISV_027855 [Vitis vinifera]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/289 (89%), Positives = 279/289 (96%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           +EKVDY++LPCPIPYEEIHREALMSLKPELFEG+RFDFTKGLNQKFSLSHSV MGPTEIP
Sbjct: 20  DEKVDYLDLPCPIPYEEIHREALMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGPTEIP 79

Query: 83  SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           SQS+ETIKIPTAHYEFGAN+IDPKLML GR+LTDGRLNARVKCDL++NL+LKANAQLT+E
Sbjct: 80  SQSSETIKIPTAHYEFGANFIDPKLMLFGRILTDGRLNARVKCDLTENLTLKANAQLTSE 139

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY 202
           PHMSHGM+NFDYKG DYRTQ Q GNGALFGASYIQ+V+P+LSLGGEVFWAGQHRKSGIGY
Sbjct: 140 PHMSHGMVNFDYKGGDYRTQLQLGNGALFGASYIQSVTPYLSLGGEVFWAGQHRKSGIGY 199

Query: 203 AARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ 262
           AARY  DKMVATGQVASTGMVALSYVQK+SEKVSLA+D MYNYMSRDVT+S GYDYILRQ
Sbjct: 200 AARYNTDKMVATGQVASTGMVALSYVQKVSEKVSLASDFMYNYMSRDVTASFGYDYILRQ 259

Query: 263 CRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           CRLRGKIDSNGC AA+LEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG
Sbjct: 260 CRLRGKIDSNGCTAAFLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468748|ref|XP_004152083.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Cucumis sativus]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 276/293 (94%)

Query: 19  KPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGP 78
           K  E+EKVDY+NLPCPIPYEEIHREA  +LKPELFEG+RFDFTKGLNQKFSLSH  +MGP
Sbjct: 24  KKTEDEKVDYLNLPCPIPYEEIHREAFSNLKPELFEGMRFDFTKGLNQKFSLSHQCVMGP 83

Query: 79  TEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQ 138
           TEIP+QS ETIKIPTA YEFGAN+IDPKLML GR+LTDGRLNARVKCDLSDNL+LKANAQ
Sbjct: 84  TEIPNQSAETIKIPTATYEFGANFIDPKLMLFGRILTDGRLNARVKCDLSDNLTLKANAQ 143

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKS 198
           LTNEPHMSHGM+NFDYKG+D+RTQFQ GNGALFGASYIQ+VSPHLSLGGEVFWAGQHRKS
Sbjct: 144 LTNEPHMSHGMVNFDYKGRDFRTQFQLGNGALFGASYIQSVSPHLSLGGEVFWAGQHRKS 203

Query: 199 GIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDY 258
           GIGYAARY  DKMVATGQVASTGMVALSYVQK+SEKVSLATD  YNYMSRDV SS+GYDY
Sbjct: 204 GIGYAARYNTDKMVATGQVASTGMVALSYVQKVSEKVSLATDFTYNYMSRDVISSLGYDY 263

Query: 259 ILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           ILRQ RLRGKIDSNGC AA+LEERLNMG+NFILSAEIDHRKKDYKFGFGLTVG
Sbjct: 264 ILRQSRLRGKIDSNGCVAAFLEERLNMGVNFILSAEIDHRKKDYKFGFGLTVG 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127130|ref|XP_002319995.1| predicted protein [Populus trichocarpa] gi|222860768|gb|EEE98310.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 252/316 (79%), Positives = 287/316 (90%), Gaps = 5/316 (1%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEE-----EKVDYMNLPCPIPYEEIHREALMSLKPELFEG 55
           MAG VP GTT   + +T++  ++     +KVDY++LPCPIPYEE+HREALMSLKPE FEG
Sbjct: 1   MAGFVPQGTTFLGNEATSEAAKKINEVHKKVDYLSLPCPIPYEELHREALMSLKPEYFEG 60

Query: 56  LRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLT 115
           +RFDFTKGLNQKFSLSHSV+MGP EIPSQS+E IKIPTAHYEFGAN+ID K MLIGRVLT
Sbjct: 61  MRFDFTKGLNQKFSLSHSVMMGPMEIPSQSSEAIKIPTAHYEFGANFIDQKTMLIGRVLT 120

Query: 116 DGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASY 175
           DGR+NARVKCDL+D+L+LKANAQLTNEPHMSH M+NFDYKGKDYR+Q Q GNGALFGASY
Sbjct: 121 DGRVNARVKCDLTDDLALKANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASY 180

Query: 176 IQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKV 235
           IQ+V+PH+SLG EVFWAGQHRKSG+GYA RYE DKMVA GQVASTG++ALSYVQK+SEKV
Sbjct: 181 IQSVTPHMSLGAEVFWAGQHRKSGVGYAGRYETDKMVAAGQVASTGLMALSYVQKVSEKV 240

Query: 236 SLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEI 295
           SLATD MYNY+S+DVT+SVGYDY LRQ RLRGKIDSNGC +A+LEERLNMGLNF+LSAE+
Sbjct: 241 SLATDFMYNYLSKDVTASVGYDYALRQARLRGKIDSNGCTSAFLEERLNMGLNFVLSAEL 300

Query: 296 DHRKKDYKFGFGLTVG 311
           DH+KKDYKFGFGLTVG
Sbjct: 301 DHKKKDYKFGFGLTVG 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095236|ref|XP_002310364.1| predicted protein [Populus trichocarpa] gi|222853267|gb|EEE90814.1| predicted protein [Populus trichocarpa]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/298 (84%), Positives = 274/298 (91%), Gaps = 1/298 (0%)

Query: 15  ASTAKPKEEEK-VDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHS 73
           A+  K  E  K VDYMNLPCPIPYEE+HREALMSLKPE FEG+RFDFTKGLNQKFSLSHS
Sbjct: 3   AAAKKVNEVHKNVDYMNLPCPIPYEELHREALMSLKPEYFEGMRFDFTKGLNQKFSLSHS 62

Query: 74  VIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSL 133
           V+MGP EIPSQS+E IKIPTAHYEFGAN+ID + MLIGRVLTDGRLNARVKCDL+D+L+L
Sbjct: 63  VMMGPMEIPSQSSEAIKIPTAHYEFGANFIDQRTMLIGRVLTDGRLNARVKCDLTDDLAL 122

Query: 134 KANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193
           KANAQLTNEPHMSH M+NFDYKGKDYR+Q Q GNGALFGASYIQ+V+PHLSLG EVFWAG
Sbjct: 123 KANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASYIQSVTPHLSLGAEVFWAG 182

Query: 194 QHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSS 253
           QHRKSG+GYA RYE DKMVA GQVASTG++ALSYVQK+SEKVSLATD MYNY+SRDVT S
Sbjct: 183 QHRKSGVGYAGRYETDKMVAAGQVASTGLMALSYVQKVSEKVSLATDFMYNYLSRDVTVS 242

Query: 254 VGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           VGYDY LRQ RLRGKIDSNGC +A+LEERLNMGLNFILSAE+DH+KKDYKFGFGLTVG
Sbjct: 243 VGYDYALRQARLRGKIDSNGCTSAFLEERLNMGLNFILSAELDHKKKDYKFGFGLTVG 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524630|ref|XP_003530931.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/288 (85%), Positives = 271/288 (94%), Gaps = 1/288 (0%)

Query: 25  KVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQ 84
           KVDY+NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK LNQKFSL+HSV+MGPTE+PSQ
Sbjct: 22  KVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPTEVPSQ 81

Query: 85  STETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEP 143
           STETIKIPTAHYEFG+ +ID P+L+L GR+LTDGRLNARVKCDLS+NL+ KANAQLTNEP
Sbjct: 82  STETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTNEP 141

Query: 144 HMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYA 203
           HMSH MINFDYKGKDYRTQFQ GNGAL GASYIQ+V+ HLSLGGEVFWAGQHRKSGIGYA
Sbjct: 142 HMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIGYA 201

Query: 204 ARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQC 263
           ARY  DK VATGQVASTGMV LSYVQK+SEKVSLA++ M NY+SRDVT+S GYDYILRQC
Sbjct: 202 ARYNTDKSVATGQVASTGMVLLSYVQKVSEKVSLASEFMCNYLSRDVTASFGYDYILRQC 261

Query: 264 RLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           RLRGKIDSNGC AA+LEERLNMGLNFILSAE+DHRKKDYKFGFGLTVG
Sbjct: 262 RLRGKIDSNGCVAAFLEERLNMGLNFILSAELDHRKKDYKFGFGLTVG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240846170|dbj|BAH79623.1| Rsdv1 resistance like protein [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/290 (84%), Positives = 272/290 (93%), Gaps = 1/290 (0%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           + KVDY+NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK LNQKFSL+HSV+MGPTE+P
Sbjct: 18  DTKVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPTEVP 77

Query: 83  SQSTETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN 141
           SQSTETIKIPTAHYEFG+ +ID P+L+L GR+LTDGRLNARVKCDLS+NL+ KANAQLTN
Sbjct: 78  SQSTETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTN 137

Query: 142 EPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIG 201
           EPHMSH MINFDYKGKDYRTQFQ GNGAL GASYIQ+V+ HLSLGGEVFWAGQHRKSGIG
Sbjct: 138 EPHMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIG 197

Query: 202 YAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR 261
           YAARY  DK VATGQVASTGMV LSYVQK+SEKVSLA++ M NY+SRDVT+S GYDYILR
Sbjct: 198 YAARYNTDKSVATGQVASTGMVLLSYVQKVSEKVSLASEFMCNYLSRDVTASFGYDYILR 257

Query: 262 QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           QCRLRGKIDSNGC AA+LEERLNMGLNFILSAE+DHRKKDYKFGFGLTVG
Sbjct: 258 QCRLRGKIDSNGCVAAFLEERLNMGLNFILSAELDHRKKDYKFGFGLTVG 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807184|ref|NP_001242605.1| mitochondrial import receptor subunit TOM40 homolog 1-like [Glycine max] gi|255637003|gb|ACU18834.1| unknown [Glycine max]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/290 (84%), Positives = 271/290 (93%), Gaps = 1/290 (0%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           + KVDY+NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK LNQKFSL+HSV+MG TE+P
Sbjct: 18  DTKVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGLTEVP 77

Query: 83  SQSTETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN 141
           SQSTETIKIPTAHYEFG+ +ID P+L+L GR+LTDGRLNARVKCDLS+NL+ KANAQLTN
Sbjct: 78  SQSTETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTN 137

Query: 142 EPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIG 201
           EPHMSH MINFDYKGKDYRTQFQ GNGAL GASYIQ+V+ HLSLGGEVFWAGQHRKSGIG
Sbjct: 138 EPHMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIG 197

Query: 202 YAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR 261
           YAARY  DK VATGQVASTGMV LSYVQK+SEKVSLA++ M NY+SRDVT+S GYDYILR
Sbjct: 198 YAARYNTDKSVATGQVASTGMVLLSYVQKVSEKVSLASEFMCNYLSRDVTASFGYDYILR 257

Query: 262 QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           QCRLRGKIDSNGC AA+LEERLNMGLNFILSAE+DHRKKDYKFGFGLTVG
Sbjct: 258 QCRLRGKIDSNGCVAAFLEERLNMGLNFILSAELDHRKKDYKFGFGLTVG 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2095355	309	TOM40 "translocase of the oute	0.990	0.996	0.75	1.5e-124
TAIR|locus:2011887	310	AT1G50400 [Arabidopsis thalian	0.980	0.983	0.658	2.1e-109
UNIPROTKB|Q7ZTM6	336	tomm40 "Mitochondrial import r	0.929	0.860	0.294	4.4e-29
UNIPROTKB|Q6P825	336	tomm40 "Mitochondrial import r	0.929	0.860	0.282	3.1e-28
ZFIN|ZDB-GENE-040426-2319	338	tomm40l "translocase of outer	0.951	0.875	0.289	5e-28
MGI|MGI:1858259	361	Tomm40 "translocase of outer m	0.845	0.728	0.297	3.2e-26
RGD|1303022	361	Tomm40 "translocase of outer m	0.845	0.728	0.297	3.2e-26
UNIPROTKB|F1PWL7	361	TOMM40 "Uncharacterized protei	0.871	0.750	0.294	2.9e-25
UNIPROTKB|F1RM44	307	F1RM44 "Uncharacterized protei	0.874	0.885	0.290	5.9e-25
MGI|MGI:3589112	308	Tomm40l "translocase of outer	0.929	0.938	0.297	5.9e-25

TAIR|locus:2095355 TOM40 "translocase of the outer mitochondrial membrane 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 234/312 (75%), Positives = 267/312 (85%)

Query:     1 MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             MA L+PP T  + DA T   K +EKVDY NLP P+PYEE+HREALMSLK + FEGLRFDF
Sbjct:     1 MADLLPPLTAAQVDAKT---KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDF 57

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQSTET-IKIPTAHYEFGANYIDPKLMLIGRVLTDGRL 119
             T+ LNQKFSLSHSV+MGPTE+P+QS ET IKIPTAHYEFGANY DPKL+LIGRV+TDGRL
Sbjct:    58 TRALNQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRL 117

Query:   120 NARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV 179
             NAR+K DL+D L +KANA +TNE HMS  M NFDY G DYR Q Q G  AL GA+YIQ+V
Sbjct:   118 NARLKADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYIQSV 177

Query:   180 SPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLAT 239
             + HLSLGGE+FWAG  RKSGIGYAARYE DKMVA+GQVASTG V ++YVQK+S+KVSLAT
Sbjct:   178 TNHLSLGGEIFWAGVPRKSGIGYAARYETDKMVASGQVASTGAVVMNYVQKISDKVSLAT 237

Query:   240 DLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK 299
             D MYNY SRDVT+SVGYDY+LRQ R+RGKIDSNG A+A LEERL+MGLNF+LSAE+DH+K
Sbjct:   238 DFMYNYFSRDVTASVGYDYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHKK 297

Query:   300 KDYKFGFGLTVG 311
             KDYKFGFGLTVG
Sbjct:   298 KDYKFGFGLTVG 309

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=ISS;RCA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2011887 AT1G50400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 204/310 (65%), Positives = 247/310 (79%)

Query:     1 MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             M G  PP  T + DA T   K +EKVDY NLPCP+ YEE++REA M+LKPELFEG R D+
Sbjct:     1 MEGFSPPINTAQVDAKT---KLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDY 57

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQ--STETIKIPTAHYEFGANYIDPKLMLIGRVLTDGR 118
              K LNQKF LSHS++MGPTE+P+   S+E IKIPTA+Y+FGA +IDPKL LIGR+ TDGR
Sbjct:    58 NKSLNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGR 117

Query:   119 LNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQN 178
             LNAR K DL+DN S+KANA LT+E   S G +  DYKG DYRTQ Q GN +++ A+YIQ+
Sbjct:   118 LNARAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQLQLGNNSVYAANYIQH 177

Query:   179 VSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLA 238
             V+PHLSLGGE FW GQ   SG+GYAARYE DK VA+GQ+ASTG+  ++YV K+SEK+S A
Sbjct:   178 VTPHLSLGGEAFWLGQQLMSGVGYAARYETDKTVASGQIASTGVAVMNYVHKVSEKLSFA 237

Query:   239 TDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHR 298
             TD +YNY+SRDVT+SVGYD I RQ RLRGK+DSNG  AAYLEE+L +GL F+LSAE+DH 
Sbjct:   238 TDFIYNYLSRDVTASVGYDLITRQSRLRGKVDSNGVVAAYLEEQLPIGLRFLLSAEVDHV 297

Query:   299 KKDYKFGFGL 308
             KKDYKFGFG+
Sbjct:   298 KKDYKFGFGV 307

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

UNIPROTKB|Q7ZTM6 tomm40 "Mitochondrial import receptor subunit TOM40 homolog" [Xenopus laevis (taxid:8355)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 97/329 (29%), Positives = 161/329 (48%)

Query:     5 VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
             VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct:    26 VPPGFTMPPVAGLTPTPDKKEPQEERLPNPGTFEECHRKC-KELFPIQMEGVKLIVNKGL 84

Query:    65 NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
             +  F ++H++        S ST    I  ++Y FGA Y+  K +        L+G     
Sbjct:    85 SNYFQVNHTI--------SLST----IGESNYHFGATYVGTKQLGPAEAFPVLVGDFDNS 132

Query:   117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALFG--- 172
             G LN ++   +++N+  K   Q T +    +  ++ +Y+G+DY      GN   L G   
Sbjct:   133 GSLNGQIIHQVTNNIRSKIALQ-TQQSKFVNWQLDTEYRGEDYTASVTLGNPDILVGSGI 191

Query:   173 --ASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVAL 225
               A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY      AT  +   G  A 
Sbjct:   192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRYTAPSWTATLTLGQAGAHA- 247

Query:   226 SYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERL 283
             +Y  K ++++ L  +   +   +D + S+GY   L +  L  +G IDSN    A LE++L
Sbjct:   248 TYYHKANDQLQLGVEFEASARMQDTSVSLGYQLDLPKANLLFKGSIDSNWIVGATLEKKL 307

Query:   284 N-MGLNFILSAEIDHRKKDYKFGFGLTVG 311
               + L   + A ++H+K  ++ GFGLT+G
Sbjct:   308 PPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

UNIPROTKB|Q6P825 tomm40 "Mitochondrial import receptor subunit TOM40 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 93/329 (28%), Positives = 159/329 (48%)

Query:     5 VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
             VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct:    26 VPPGFTMPPVAGLTPTPDKKETQEDRLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGL 84

Query:    65 NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
             +  F ++H+V +              I  ++Y FGA Y+  K +        L+G +   
Sbjct:    85 SNYFQVNHTVSLS------------MIGESNYHFGATYVGTKQLGPAEAFPVLVGDLDNS 132

Query:   117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALFG--- 172
             G LNA++   ++ N+  K   Q T +    +  ++ +Y+G+D+      GN   L G   
Sbjct:   133 GSLNAQIIHQVTSNVRSKIALQ-TQQSKFVNWQLDTEYRGEDFTAAVTLGNPDILVGSGI 191

Query:   173 --ASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVAL 225
               A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY      AT  +   G  A 
Sbjct:   192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRYTAPNWTATLTLGQAGAHA- 247

Query:   226 SYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERL 283
             +Y  K ++++ +  +   +   +D + S GY   L +  L  +G +DSN    A LE++L
Sbjct:   248 TYYHKANDQLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKL 307

Query:   284 N-MGLNFILSAEIDHRKKDYKFGFGLTVG 311
               + L   + A ++H+K  ++ GFGLT+G
Sbjct:   308 PPLPLTLAMGAFLNHKKNKFQCGFGLTIG 336

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-040426-2319 tomm40l "translocase of outer mitochondrial membrane 40 homolog, like" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 94/325 (28%), Positives = 161/325 (49%)

Query:     5 VPPGTTVKP----DASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             VPPG T+ P     A ++ P  ++  +   LP P  +EE HR+    + P   EG+R   
Sbjct:    25 VPPGFTMPPVSPVSAPSSSPTGQQDTE-PPLPNPGGFEECHRKC-KEVFPVQMEGVRLTV 82

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLN 120
              KGL+  F ++H+V++      S       + T   + G     P  +++G +   G LN
Sbjct:    83 NKGLSNHFQVNHTVLLSTQADSSYRFGATYVGTK--QTGPGEAFP--VMVGDMDNTGSLN 138

Query:   121 ARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----AS 174
             A+V   ++D +  K   Q T +    +   + ++KG+D+     FGN   L G     A 
Sbjct:   139 AQVIHQITDKVRSKFVFQ-TQQQKFVNWQGDTEFKGEDFTAAVTFGNPDVLMGSGIVVAH 197

Query:   175 YIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVALSYVQ 229
             Y+Q+V+  L+LGGE+ +   HR+ G     +  A RY     +AT  +   G+ A SY  
Sbjct:   198 YLQSVTSSLALGGELVY---HRRPGEEGTVMSLAGRYTGSNFIATLTLGGAGVHA-SYYH 253

Query:   230 KLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLN-MG 286
             K ++++ +  +   +   +D + + GY   + +  L  +G +DSN    A LE++L  + 
Sbjct:   254 KANDQLQVGVEYEVSTRMQDTSVTFGYQLDVPKANLVFKGSLDSNWVVGANLEKKLQPLP 313

Query:   287 LNFILSAEIDHRKKDYKFGFGLTVG 311
             L+  LSA +DHRK  ++ GFG+T+G
Sbjct:   314 LSLALSAYLDHRKHKFQCGFGITIG 338

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1858259 Tomm40 "translocase of outer mitochondrial membrane 40 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 90/303 (29%), Positives = 148/303 (48%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct:    77 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
             + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct:   240 RPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query:   252 SSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLN-MGLNFILSAEIDHRKKDYKFGFGL 308
             +S GY   L +     +G ++SN    A LE++L  + L   L A ++HRK  +  GFGL
Sbjct:   299 ASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGL 358

Query:   309 TVG 311
             T+G
Sbjct:   359 TIG 361

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0008320 "protein transmembrane transporter activity" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1303022 Tomm40 "translocase of outer mitochondrial membrane 40 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 90/303 (29%), Positives = 148/303 (48%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct:    77 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVT 251
             + G     +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D +
Sbjct:   240 RPGEKGTVMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTS 298

Query:   252 SSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLN-MGLNFILSAEIDHRKKDYKFGFGL 308
             +S GY   L +     +G ++SN    A LE++L  + L   L A ++HRK  +  GFGL
Sbjct:   299 ASFGYQLDLPKANFLFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGL 358

Query:   309 TVG 311
             T+G
Sbjct:   359 TIG 361

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA;ISO;IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO;IMP;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0008320 "protein transmembrane transporter activity" evidence=IMP

GO:0015031 "protein transport" evidence=TAS

GO:0015288 "porin activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA;ISO

GO:0046930 "pore complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1PWL7 TOMM40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 87/295 (29%), Positives = 142/295 (48%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +      +       
Sbjct:    77 LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTVGESNYHFGVTY 135

Query:    91 IPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMI 150
             + T   +       P  +L+G +   G LNA+V   L   L  K   Q T +    +  +
Sbjct:   136 VGTK--QLSPTEAFP--VLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQSKFVNWQV 190

Query:   151 NFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHRKSG----- 199
             + +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR+ G     
Sbjct:   191 DGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HRRPGEEGTV 247

Query:   200 IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYI 259
             +  A +Y  +  +AT  +   GM A +Y  K SE++ +  +   +   +D + S GY   
Sbjct:   248 MSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASEQLQVGVEFEASTRMQDTSVSFGYQLD 306

Query:   260 LRQCRL--RGKIDSNGCAAAYLEERLN-MGLNFILSAEIDHRKKDYKFGFGLTVG 311
             L +  L  +G +DSN    A LE++L  + L   L A ++HRK  ++ GFGLT+G
Sbjct:   307 LPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTIG 361

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|F1RM44 F1RM44 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 86/296 (29%), Positives = 143/296 (48%)

Query:    30 NLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETI 89
             +LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +      +      
Sbjct:    22 SLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVT 80

Query:    90 KIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGM 149
              + T   +       P  +L+G +   G LNA+V   L   L  K   Q T +    +  
Sbjct:    81 YVGTK--QLSPTEAFP--VLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQSKFVNWQ 135

Query:   150 INFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHRKSG---- 199
             ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR+ G    
Sbjct:   136 VDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HRRPGEEGT 192

Query:   200 -IGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDY 258
              +  A +Y  +  +AT  +   GM A +Y  K S+++ +  +   +   +D + S GY  
Sbjct:   193 VMSLAGKYTLNNWLATVTLGQAGMHA-TYYHKASDQLQVGVEFEASTRMQDTSVSFGYQL 251

Query:   259 ILRQCRL--RGKIDSNGCAAAYLEERLN-MGLNFILSAEIDHRKKDYKFGFGLTVG 311
              L +  L  +G +DSN    A LE++L  + L   L A ++HRK  ++ GFGLT+G
Sbjct:   252 DLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTIG 307

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

MGI|MGI:3589112 Tomm40l "translocase of outer mitochondrial membrane 40 homolog-like (yeast)" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 96/323 (29%), Positives = 149/323 (46%)

Query:     3 GLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTK 62
             GL P GT   P  S    + EE      LP P  ++E+HR     + P   EG++    K
Sbjct:     6 GLAPMGTL--PRRSH---RREEP-----LPNPGSFDELHR-LCKDVFPAQMEGVKLVVNK 54

Query:    63 GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNAR 122
              L+  F ++H+V M    +P     T       ++     + P +  +G + + G LNA+
Sbjct:    55 VLSSHFQVAHTVHMSALGLPGYHLHTAY--AGDWQLSPTEVFPTV--VGDMDSSGSLNAQ 110

Query:   123 VKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGAS------YI 176
             V   L++ L  KA  Q T +        + +Y+G DY      GN  L G S      ++
Sbjct:   111 VLLLLAERLRAKAVFQ-TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFL 169

Query:   177 QNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMVATGQVASTGMVALSYVQKL 231
             Q+++  L LGGE+ +   HR+ G     +  A +Y     VAT  V S G  A SY  K 
Sbjct:   170 QSITHRLVLGGELVY---HRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHA-SYYHKA 225

Query:   232 SEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL--RGKIDSNGCAAAYLEERLN-MGLN 288
             +E+V +  +   N   +D T S GY   L Q  +  RG +DSN C  A LE+++  + + 
Sbjct:   226 NEQVQVGVEFEANTRLQDTTFSFGYHLTLPQADMVFRGLVDSNWCVGAVLEKKMRPLPVT 285

Query:   289 FILSAEIDHRKKDYKFGFGLTVG 311
               L A ++H +  +  GF +TVG
Sbjct:   286 LALGAFLNHWRNRFHCGFSITVG 308

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHE5	TO401_ARATH	No assigned EC number	0.75	0.9903	0.9967	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	1e-111
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	6e-72
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	1e-21
TIGR00989	161	TIGR00989, 3a0801s07tom40, mitochondrial import re	3e-15
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	3e-09
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	5e-09

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score =  322 bits (828), Expect = e-111
 Identities = 114/291 (39%), Positives = 166/291 (57%), Gaps = 22/291 (7%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE+HRE       + F+G R D  KGL+  F +SHS+ +G + + S       
Sbjct: 1   LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTS------- 53

Query: 91  IPTAHYEFGANYIDPK--LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHG 148
                Y+FGA Y+  K    L G +  DG LNAR+   L D L  K  AQL +    +  
Sbjct: 54  ----SYQFGATYVGDKQYPFLQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMS 108

Query: 149 MINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWA--GQHRKSGI 200
            +  DY+G D+    +  N        ++ ASY+Q+V+P L+LGGE+ +     +  S +
Sbjct: 109 QLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVL 168

Query: 201 GYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL 260
            YAARY     +A+GQ+ + G + LSY +KLS+K+ L  +L  N  +R+ T+++GY Y  
Sbjct: 169 SYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF 228

Query: 261 RQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           RQ R RG IDSNG  +A LE+RL + L+ +LS E++H K DYKFGFGLT+G
Sbjct: 229 RQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDYKFGFGLTIG 279

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  223 bits (570), Expect = 6e-72
 Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 37/291 (12%)

Query: 33  CPIPYEEIHREA--LMSLKPELFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTET 88
            P  YE+I +EA  L++ K   F+G + D T    L   F++S S  +G           
Sbjct: 1   NPGTYEDIGKEARDLLN-KDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGG--------- 50

Query: 89  IKIPTAHYEFGANYID--PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMS 146
                +  +F A Y D    L L      D   NA V   L+  L LK + QL       
Sbjct: 51  ----LSSGDFEAKYKDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKK 106

Query: 147 HGMINFDYKGKDYRTQFQFGNGA--LFGASYIQNVSPHLSLGGEVFWAGQHRKS-----G 199
              +  +YKG D+    + G     +   S +Q V+  L+LG E  +     K       
Sbjct: 107 SAKLELEYKGDDFTASLKVGLLKGPIVVGSALQGVT-GLALGAEAVYDTASGKLTKYNAA 165

Query: 200 IGYAARYENDKMVATGQVA-STGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDY 258
           +GYAAR      +A+  +     ++  SY  K+S+K+ +  +L +N+ S + T++VGY Y
Sbjct: 166 LGYAAR----DYIASLTLNNKGDVLTASYYHKVSDKLEVGAELTWNFSSNETTTTVGYKY 221

Query: 259 ILRQC-RLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFG 305
            L     ++ K+DSNG     LE+RL  G+   LSAE+DH+K     +KFG
Sbjct: 222 DLDPSTTVKAKVDSNGKVGLLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 92.0 bits (228), Expect = 1e-21
 Identities = 44/282 (15%), Positives = 85/282 (30%), Gaps = 16/282 (5%)

Query: 37  YEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTE---IPSQSTETIKIPT 93
           Y E+ + A          G++ D       +F+ S S      E       S ET    +
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWS 61

Query: 94  AHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFD 153
            +                       L   V+  LS  L    ++  +      +  I   
Sbjct: 62  PYGLT--------FTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTG 113

Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYE---NDK 210
           YK  +      F          +         G ++ +    R +   +A  Y+   N+ 
Sbjct: 114 YKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEF 173

Query: 211 MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRL-RGKI 269
              T     T     S   K+++K+ +  +L     + +    +   Y +         +
Sbjct: 174 QAHTNVNDGTEF-GGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASV 232

Query: 270 DSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG 311
           +++        + L  G+   LSA +DH+   +K G GL   
Sbjct: 233 NNSSLVGLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGLEFQ 274

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|130062 TIGR00989, 3a0801s07tom40, mitochondrial import receptor subunit Tom40

 Score = 71.8 bits (176), Expect = 3e-15
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 27/165 (16%)

Query: 38  EEIHREALMSLKPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAH 95
           +E+ R+ L+S    +F GLR D TK   L   F +SH   MG   +P             
Sbjct: 12  KEVSRDTLLS--NYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPP------------ 57

Query: 96  YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN-EPHMSHGMINFDY 154
           Y F A +   +L   G +  DG ++ R+     D    K   Q++  +P M       D+
Sbjct: 58  YAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQPDMCQ--FEHDH 115

Query: 155 KGKDYRTQFQ-----FGNGALFG---ASYIQNVSPHLSLGGEVFW 191
            G D+    +     F    L G    SY+Q+V+P L LG E  W
Sbjct: 116 LGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALW 160

The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents.These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins [Transport and binding proteins, Amino acids, peptides and amines]. Length = 161

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARY--ENDKM 211
           Y   D+    +  NG     SY   VSP L++G +V W     ++      +Y  + D +
Sbjct: 167 YTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDAL 226

Query: 212 VATGQVASTGMVALSYVQKLSEKVSL 237
           V   +V + G + LSY  KL   V+L
Sbjct: 227 VK-AKVNNDGQLGLSYQHKLRPGVTL 251

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 18/224 (8%)

Query: 98  FGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSH--GMINFDYK 155
             A Y    L L  +  TD  L   +  +      LK     T  P+     G +   YK
Sbjct: 55  LEAKYKIKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYK 114

Query: 156 GKDY---RTQFQFGNGALFGASYIQNVSPH--LSLGGEVFWAGQHRKSGIGYAA--RYEN 208
             D            G L GAS    V  +    LG EV +    +     Y     Y N
Sbjct: 115 -HDPININADVDLNKGPLVGAS---AVLGYKGFLLGAEVVYDTA-KSKFTKYNFALGYTN 169

Query: 209 DKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL-RQCRLRG 267
                + ++ +   +  SY  K+S ++++   + +   + + T +VG  Y L     ++ 
Sbjct: 170 GDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKA 229

Query: 268 KIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFGFGL 308
           K++++G      + +L  G+   LSA  D +      +KFG  L
Sbjct: 230 KVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL 273

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	100.0
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	100.0
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.81
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	99.61
cd07303	274	Porin3 Eukaryotic porin family that forms channels	99.5
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	99.49
KOG3126	281	consensus Porin/voltage-dependent anion-selective	99.22
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	98.81
KOG3296	308	consensus Translocase of outer mitochondrial membr	98.59
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	97.49
PF03349	427	Toluene_X: Outer membrane protein transport protei	96.6
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	95.92
PRK10716	435	long-chain fatty acid outer membrane transporter;	95.82
PRK10716	435	long-chain fatty acid outer membrane transporter;	89.78
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	88.92
PF03349	427	Toluene_X: Outer membrane protein transport protei	87.85
PRK10993	314	outer membrane protease; Reviewed	86.77
PF11383	319	DUF3187: Protein of unknown function (DUF3187); In	86.02
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	83.5
TIGR03509	649	OMP_MtrB_PioB decaheme-associated outer membrane p	83.11
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	80.73

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=1.9e-64  Score=464.26  Aligned_cols=269  Identities=42%  Similarity=0.769  Sum_probs=256.4

Q ss_pred             CCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc--eE
Q 021528           31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--LM  108 (311)
Q Consensus        31 l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~--~~  108 (311)
                      ++|||+|||||||||+++.+++|||+|+|++|.++++|+++|+++||+..+           ++.|+|+++|++++  .+
T Consensus         1 ~~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~-----------~~~y~f~a~y~~~~~~~~   69 (279)
T cd07305           1 LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSL-----------TSSYQFGATYVGDKQYPF   69 (279)
T ss_pred             CcCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCC-----------CCCcEeeeEEecCCCcEE
Confidence            689999999999999988778889999999999999999999999998531           35899999999999  99


Q ss_pred             EEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCC------CeeEEEEEEeecCc
Q 021528          109 LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNG------ALFGASYIQNVSPH  182 (311)
Q Consensus       109 l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~------~~~~~s~lq~vt~~  182 (311)
                      ++++||++|+|+++++++|.+++++|+++++++. +...+|+++||.++||++++++.||      ++++++|+|+|||+
T Consensus        70 ~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~  148 (279)
T cd07305          70 LQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK  148 (279)
T ss_pred             EEEEeCCCCceeEEEEeccCcceEEEEEEEecCC-CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc
Confidence            9999999999999999999999999999999875 6789999999999999999999988      57899999999999


Q ss_pred             eeeeeEEEEe--ccCCceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe
Q 021528          183 LSLGGEVFWA--GQHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL  260 (311)
Q Consensus       183 l~lG~e~~~~--~~~~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~  260 (311)
                      |++|+|+.|+  +..+.+.+++++||+.++|++++++++.+.+.+||+|+++|++++|+|++|+..++++++++|++|.+
T Consensus       149 l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~  228 (279)
T cd07305         149 LALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF  228 (279)
T ss_pred             EEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence            9999999999  56678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528          261 RQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG  311 (311)
Q Consensus       261 ~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G  311 (311)
                      +++++||+||++|+|++.||++|+|+++|+||+++||+++++|||+||+||
T Consensus       229 ~~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~~~~~kfG~gl~i~  279 (279)
T cd07305         229 RQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDYKFGFGLTIG  279 (279)
T ss_pred             CCCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEcccCCcceEEEEEEeC
Confidence            999999999999999999999999999999999999999999999999997

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=5.1e-53  Score=386.99  Aligned_cols=263  Identities=16%  Similarity=0.204  Sum_probs=235.3

Q ss_pred             cHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCC------ceEE
Q 021528           36 PYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDP------KLML  109 (311)
Q Consensus        36 ~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~------~~~l  109 (311)
                      +|+||+|+|||+|.+++|+|+||||+|.++++|+++|++.+++.             ++.|+|++.|..+      ..++
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~-------------~~~~~~~~~~~~k~~~~~~~~t~   67 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETI-------------ESTTKVGGSLETKYRWSPYGLTF   67 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEccccccccc-------------CCCceEEEEEEEeeeecCCCeEE
Confidence            59999999999988888889999999999999999999999863             2368888888763      2345


Q ss_pred             EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeee
Q 021528          110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGG  187 (311)
Q Consensus       110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~  187 (311)
                      +.+|++|  +.+++++.++|.+++++++++++.|+++...+|+++||+++++++.+++.+.+++..+++|.++++|++|+
T Consensus        68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~  147 (274)
T cd07303          68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGY  147 (274)
T ss_pred             EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEE
Confidence            5555555  55566777889999999999999887778899999999999999999997777788899999999999999


Q ss_pred             EEEEeccCCceeeEEEEEEeC--CCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecc-eE
Q 021528          188 EVFWAGQHRKSGIGYAARYEN--DKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ-CR  264 (311)
Q Consensus       188 e~~~~~~~~~t~~~~~~rY~~--~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~-s~  264 (311)
                      |+.|+..++.+.+++++.|..  ++|++++++++.+.+.+||||||+|++++|+|++|+.+++|++++||++|.+++ ++
T Consensus       148 e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~  227 (274)
T cd07303         148 QMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDAC  227 (274)
T ss_pred             EEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCE
Confidence            999998765566666666666  899999999998899999999999999999999999989999999999999987 89


Q ss_pred             EEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528          265 LRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG  311 (311)
Q Consensus       265 vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G  311 (311)
                      |||+||++|+|++.||++|+|+++|+||++|||+++.||||+||+||
T Consensus       228 vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~~~~~KfG~gl~~~  274 (274)
T cd07303         228 FSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGLEFQ  274 (274)
T ss_pred             EEEEECCCceEEEEEEEEcCCCcEEEEEEEecCCCCCeeEEEEEEeC
Confidence            99999999999999999999999999999999999999999999998

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=6.8e-50  Score=365.63  Aligned_cols=261  Identities=38%  Similarity=0.642  Sum_probs=230.0

Q ss_pred             CCCcHHHhHHHHhhccCc-cccceEEEEEec--cCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEE
Q 021528           33 CPIPYEEIHREALMSLKP-ELFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLML  109 (311)
Q Consensus        33 ~Pg~f~dl~ke~~~~l~~-~~f~G~kl~~~k--~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l  109 (311)
                      |||+|+||+|+|||+|.. ++|||+|||+++  ..+++|+++|.++++...            +..|+|+++|.+.+..+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~   68 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSV------------PSSYSFGAKYKGPKLTV   68 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--------------EEEEEEEEEECEEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCC------------ccceEEEEEEeCceeeE
Confidence            799999999999998865 489999999999  789999999999998741            45899999999888889


Q ss_pred             EEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcC--CCeeEEEEEEeecCceeeee
Q 021528          110 IGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGG  187 (311)
Q Consensus       110 ~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n--~~~~~~s~lq~vt~~l~lG~  187 (311)
                      ++++|+++.+++++.+.+.+++++++.+++.+++.....++++||.++++++++++.+  ..++.+||+|+++|+|++|+
T Consensus        69 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~  148 (273)
T PF01459_consen   69 KGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGA  148 (273)
T ss_dssp             EEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEE
T ss_pred             EEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEE
Confidence            9999999999999999999999999999999877668999999999999999999975  66899999999999999999


Q ss_pred             EEEEeccCCcee-----eEEEEEEeCCCeEEEEEE-cccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEec
Q 021528          188 EVFWAGQHRKSG-----IGYAARYENDKMVATGQV-ASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR  261 (311)
Q Consensus       188 e~~~~~~~~~t~-----~~~~~rY~~~~~~~~~~~-~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~  261 (311)
                      |+.|+...+...     ++++.||..+++++++++ ++.+.+.+||+|++++++++|+|++++...++++++||++|.++
T Consensus       149 e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~  228 (273)
T PF01459_consen  149 EATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLD  228 (273)
T ss_dssp             EEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             EEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcC
Confidence            999998775333     667777777799999999 56889999999999999999999999999999999999999999


Q ss_pred             ce-EEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeee
Q 021528          262 QC-RLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFG  305 (311)
Q Consensus       262 ~s-~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG  305 (311)
                      ++ +||++||++|+|++.||++|+|+++|+||+++||++..||||
T Consensus       229 ~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~KfG  273 (273)
T PF01459_consen  229 DSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELDHKNNNHKFG  273 (273)
T ss_dssp             TTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEECTT-C-EEEE
T ss_pred             cccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEccCCCCCCcC
Confidence            87 999999999999999999999999999999999999999998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-51  Score=367.77  Aligned_cols=273  Identities=37%  Similarity=0.615  Sum_probs=246.0

Q ss_pred             ccccccCCCCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEE
Q 021528           23 EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANY  102 (311)
Q Consensus        23 ~~~~~~~~l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y  102 (311)
                      .+.+...+++|||++++||+||+  ++|-.++|+|++++|.++++|+|+|++.+++..            ++.|+|+++|
T Consensus        19 ~~~~~~~~~~Npgt~e~L~~~~~--~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~------------~sg~~fg~ty   84 (308)
T KOG3296|consen   19 LSRRACYNLLNPGTVEELHSEAS--VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIA------------ASGYRFGPTY   84 (308)
T ss_pred             cccccccccCCcHHHHHhhhhhc--cCceeecceEeeecccccCceEeccceecccCc------------cccceeccce
Confidence            35666778999999999999999  689999999999999999999999999998753            3456666665


Q ss_pred             eC--------CceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCe----
Q 021528          103 ID--------PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGAL----  170 (311)
Q Consensus       103 ~~--------~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~----  170 (311)
                      ++        ...++.|++|+||+|+++++++|.++++.|+++|+++ .+....|++.+|.+.|+++.+...||.+    
T Consensus        85 ~~~~q~~~~~~~~il~G~vD~~Gslna~l~~~l~~~Lr~K~~~q~~~-~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sg  163 (308)
T KOG3296|consen   85 VYTFQASPTEAFLILRGDVDNDGSLNARLIHQLTDNLRSKVALQIQQ-SKEVESQVTGEYRGRDYTLTLPLGNPDLGESG  163 (308)
T ss_pred             eeeeccccCCCcceEEEecCCCCchhheeecccchhhHHHHHHHhcc-hhhhccccccceecccccccccccCcccccch
Confidence            54        4579999999999999999999999999999999986 4467889999999999999999887763    


Q ss_pred             -eEEEEEEeecCceeeeeEEEEec--cCCceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc
Q 021528          171 -FGASYIQNVSPHLSLGGEVFWAG--QHRKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS  247 (311)
Q Consensus       171 -~~~s~lq~vt~~l~lG~e~~~~~--~~~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~  247 (311)
                       +.++|+|+|||+|++|+|+.|+.  +...+.+++++||...+|+++++++..|.. ++|||++.++++.|+|++++++-
T Consensus       164 i~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g~~-~~y~~r~~~~~~~~ve~~~~~~~  242 (308)
T KOG3296|consen  164 IYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQGLT-GTYYQRAVEKLQMGVEFETNTRL  242 (308)
T ss_pred             HHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEecccccce-ehhhhhhhhhhccceeEeeeccc
Confidence             67999999999999999999998  346799999999999999999999877655 99999999999999999999998


Q ss_pred             ceeEEEEEEEEEec--ceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCCeeeeEEEEeC
Q 021528          248 RDVTSSVGYDYILR--QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKDYKFGFGLTVG  311 (311)
Q Consensus       248 ~~~~~~vG~~y~~~--~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~~kfG~gl~~G  311 (311)
                      ++...+++++|+++  ++++||+|||+|+|++++|+||.++++|.||+++||.++++|||+||++|
T Consensus       243 ~~~~~t~a~~~~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  243 QSTDVTAAYGYDLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHVKNDFKFGFGLTIG  308 (308)
T ss_pred             CCcceEEEEEeeccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeecccccccccceeEEeC
Confidence            88888888888886  58999999999999999999997799999999999999999999999997

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=100.00  E-value=2.3e-41  Score=279.91  Aligned_cols=149  Identities=30%  Similarity=0.466  Sum_probs=138.4

Q ss_pred             CCCCCcHHHhHHHH-hhcc-CccccceEEEEEecc--CCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc
Q 021528           31 LPCPIPYEEIHREA-LMSL-KPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK  106 (311)
Q Consensus        31 l~~Pg~f~dl~ke~-~~~l-~~~~f~G~kl~~~k~--~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~  106 (311)
                      |+|||+||+||||| ||++ .++.|||+|+|++|.  ++|+|+++|+++||+..            .+.|+|+|+|++++
T Consensus         1 l~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~------------~p~Y~FgA~y~~~~   68 (161)
T TIGR00989         1 LSNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQR------------LPPYAFSALFGTNQ   68 (161)
T ss_pred             CcCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCC------------CCCceeeeEecCCc
Confidence            68999999999999 8874 689999999999999  59999999999999854            23699999999999


Q ss_pred             eEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCC--------eeEEEEEEe
Q 021528          107 LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA--------LFGASYIQN  178 (311)
Q Consensus       107 ~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~--------~~~~s~lq~  178 (311)
                      ++++|++|+||+|++|++|+|.+++++|+++|+.++. ...+|+++||+|+||++++|+.||+        ++++||+|+
T Consensus        69 ~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~-~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQs  147 (161)
T TIGR00989        69 LFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQ-PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQS  147 (161)
T ss_pred             EEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCC-CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeeh
Confidence            9999999999999999999999999999999998643 4789999999999999999999987        689999999


Q ss_pred             ecCceeeeeEEEEe
Q 021528          179 VSPHLSLGGEVFWA  192 (311)
Q Consensus       179 vt~~l~lG~e~~~~  192 (311)
                      |||+|++|+|+.|+
T Consensus       148 VTp~LaLG~E~~yq  161 (161)
T TIGR00989       148 VTPRLGLGLEALWQ  161 (161)
T ss_pred             hCcceeeeeeeEeC
Confidence            99999999999996

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=3.8e-38  Score=289.37  Aligned_cols=265  Identities=20%  Similarity=0.295  Sum_probs=228.6

Q ss_pred             CCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEEEEE
Q 021528           34 PIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR  112 (311)
Q Consensus        34 Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l~~~  112 (311)
                      ||.|.||+|.|||+|. +++|..++||+++...+.+.++-.......           .......+++.|..+.+.+..+
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~-----------~~~~~g~~e~k~~~~~~t~~~k   69 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPD-----------TGKVSGSLEAKYKIKGLTLTQK   69 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCC-----------CceEEEEEEEEEEeCCEEEEEE
Confidence            8999999999999986 567799999999887665555533333221           0123456677787777889999


Q ss_pred             ECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEc--CCCeeEEEEEEeecCceeeeeE
Q 021528          113 VLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFG--NGALFGASYIQNVSPHLSLGGE  188 (311)
Q Consensus       113 ~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~--n~~~~~~s~lq~vt~~l~lG~e  188 (311)
                      |++++.|.+++..  .+.+++++.+.+.++|.......+++++|..+.+.+...+.  ++.++.++..... ++|.+|+|
T Consensus        70 ~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e  148 (276)
T cd07306          70 WNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAE  148 (276)
T ss_pred             EeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEE
Confidence            9999999998865  35699999999999987667788999999999998887763  3556677776665 89999999


Q ss_pred             EEEeccC-CceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecc-eEEE
Q 021528          189 VFWAGQH-RKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQ-CRLR  266 (311)
Q Consensus       189 ~~~~~~~-~~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~-s~vk  266 (311)
                      +.|+... +.+.++++++|+.++|++++++++.+.+.+||+|+++|++++|+|+.|+...+++++++|++|.+++ +.+|
T Consensus       149 ~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vk  228 (276)
T cd07306         149 VVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVK  228 (276)
T ss_pred             EEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEE
Confidence            9999875 4789999999999999999999998899999999999999999999999988999999999999986 8999


Q ss_pred             EEEcCCceEEeeeeecccCceEEEEEEEEecCC---CCeeeeEEEEe
Q 021528          267 GKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFGFGLTV  310 (311)
Q Consensus       267 ~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~---~~~kfG~gl~~  310 (311)
                      |+||++|+++++||++|+|+++++||+++|+++   +.||||+||+|
T Consensus       229 akv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~  275 (276)
T cd07306         229 AKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSL  275 (276)
T ss_pred             EEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEe
Confidence            999999999999999999999999999999987   89999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=253.66  Aligned_cols=267  Identities=18%  Similarity=0.259  Sum_probs=220.2

Q ss_pred             CCCCCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCC--ce
Q 021528           31 LPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDP--KL  107 (311)
Q Consensus        31 l~~Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~--~~  107 (311)
                      .+.||+|.||+|.|||+|+ +|.|+-.++++++.....+..+.+-.-...        .   ......+.+.|..+  ++
T Consensus         1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~--------~---~~v~gsle~k~~~~~~gl   69 (281)
T KOG3126|consen    1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTD--------T---GKVKGSLETKYKDKDYGL   69 (281)
T ss_pred             CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccc--------e---eeeeeeeEEEEeeccCce
Confidence            3689999999999999986 567777777777765553443322211110        0   11223345555544  67


Q ss_pred             EEEEEECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEE---EcCCCeeEEEEEEeecCc
Q 021528          108 MLIGRVLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ---FGNGALFGASYIQNVSPH  182 (311)
Q Consensus       108 ~l~~~~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk---~~n~~~~~~s~lq~vt~~  182 (311)
                      +++.+|++|++|.++|..  ++.+++++.+++.+.|+....+.++++.|..+.+++...   ..+|.+.+ +... -.+.
T Consensus        70 t~t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~-s~v~-g~~g  147 (281)
T KOG3126|consen   70 TLTEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILG-SLVL-GHEG  147 (281)
T ss_pred             EEEEEeecCCccceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEE-EEEe-cccc
Confidence            999999999999999876  689999999999999977778899999999999988863   34565554 4444 3568


Q ss_pred             eeeeeEEEEeccCC-ceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEec
Q 021528          183 LSLGGEVFWAGQHR-KSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILR  261 (311)
Q Consensus       183 l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~  261 (311)
                      |.+|+|+.|+...+ .+.+++++.|..++++++..++|.+.+..|+||+++++++.+++++|.....+..++||.+|.+|
T Consensus       148 ~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD  227 (281)
T KOG3126|consen  148 WLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALD  227 (281)
T ss_pred             eEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccC
Confidence            99999999999775 69999999999999999999999999999999999999999999999998889999999999997


Q ss_pred             c-eEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC--CCeeeeEEEEe
Q 021528          262 Q-CRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK--KDYKFGFGLTV  310 (311)
Q Consensus       262 ~-s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~--~~~kfG~gl~~  310 (311)
                      . +.|||||++.|++++.|+|+|||++.++||+++|.++  ..||||++|.|
T Consensus       228 ~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~  279 (281)
T KOG3126|consen  228 PDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL  279 (281)
T ss_pred             CCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence            4 6899999999999999999999999999999999773  34999999986

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.81  E-value=4.4e-17  Score=150.02  Aligned_cols=193  Identities=17%  Similarity=0.144  Sum_probs=167.3

Q ss_pred             cceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCceEEEEE-ECCC-----ccEEEEEEee
Q 021528           53 FEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR-VLTD-----GRLNARVKCD  126 (311)
Q Consensus        53 f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~~~l~~~-~d~d-----g~L~~~~~~~  126 (311)
                      -.-+...+.+.+++++.+.+++.+...            ....|+++..|.++...+..+ .+++     |.+.+++.+.
T Consensus        77 ~g~l~~~~~~~~~~~~~~k~~~~~~~~------------~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~  144 (279)
T cd07305          77 DGNLNARIIHQLGDRLRSKLQAQLQDS------------KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQS  144 (279)
T ss_pred             CCceeEEEEeccCcceEEEEEEEecCC------------CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEE
Confidence            344566677778889999988888542            135799999999987766666 5554     8999999999


Q ss_pred             ccccceeEEEEEec--CCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEE
Q 021528          127 LSDNLSLKANAQLT--NEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAA  204 (311)
Q Consensus       127 ~~~~l~~k~~~~~~--~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~  204 (311)
                      +++++.+..++.+.  +..+...+++.++|.++||++++++.+.+.+.+||+|+|++++++|+|+.|+...+.+.+.+|.
T Consensus       145 vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~  224 (279)
T cd07305         145 VTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGY  224 (279)
T ss_pred             ccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEE
Confidence            99999999999988  6777888999999999999999999988889999999999999999999999988889999999


Q ss_pred             EEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEE
Q 021528          205 RYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYD  257 (311)
Q Consensus       205 rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~  257 (311)
                      +|..+++.+++++++.|.+++.|.|++++++.++...+++...++..+.+|..
T Consensus       225 ~y~~~~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~~~~~kfG~gl~  277 (279)
T cd07305         225 QYDFRQSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVKNDYKFGFGLT  277 (279)
T ss_pred             EEEcCCCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEcccCCcceEEEEEE
Confidence            99999999999999999999999999999999999999988776655555543

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=99.61  E-value=1.9e-12  Score=119.12  Aligned_cols=164  Identities=20%  Similarity=0.333  Sum_probs=131.0

Q ss_pred             ceEEEEEEeCCceEEEEEECCC-c-cEEEEEEeeccccceeEEEEEecCC-CCcceeeEEEEEEeCCeEEEEEEcCCCee
Q 021528           95 HYEFGANYIDPKLMLIGRVLTD-G-RLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGALF  171 (311)
Q Consensus        95 ~y~f~~~y~~~~~~l~~~~d~d-g-~L~~~~~~~~~~~l~~k~~~~~~~~-~~~~~~~~~~dy~g~d~t~~lk~~n~~~~  171 (311)
                      ..++.+.|..+..-+..+++-. + .+++.+... .+++.+-.++.+.-. .+...+.+.+.|.++||++++++.+...+
T Consensus       106 s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g-~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l  184 (276)
T cd07306         106 SGKLKAGYKHDPININADVDLNKGPLVGASAVLG-YKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTL  184 (276)
T ss_pred             eEEEEEEEecCCeeEEEEecccCCCeeEEEEEec-ccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEE
Confidence            5678888988877777777664 2 233444443 367666666665432 34567889999999999999999888889


Q ss_pred             EEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc-ce
Q 021528          172 GASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS-RD  249 (311)
Q Consensus       172 ~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~-~~  249 (311)
                      .+||+|+|++++++|+|+.|....+.+.+++|++|..++ +++++++++.+.++++|.|+++|++++++..+.+... .+
T Consensus       185 ~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~  264 (276)
T cd07306         185 RGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQ  264 (276)
T ss_pred             EEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCC
Confidence            999999999999999999999877789999999999886 8999999999999999999999999999998888754 22


Q ss_pred             eEEEEEEEEE
Q 021528          250 VTSSVGYDYI  259 (311)
Q Consensus       250 ~~~~vG~~y~  259 (311)
                      ....+|....
T Consensus       265 ~~~K~G~~l~  274 (276)
T cd07306         265 GGHKFGLSLS  274 (276)
T ss_pred             CCCeEEEEEE
Confidence            4455555444

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=99.50  E-value=4.9e-11  Score=109.58  Aligned_cols=161  Identities=16%  Similarity=0.223  Sum_probs=123.3

Q ss_pred             eEEEEEEeCCceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEe--CCeEEEEEEcCCCeeEE
Q 021528           96 YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKG--KDYRTQFQFGNGALFGA  173 (311)
Q Consensus        96 y~f~~~y~~~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g--~d~t~~lk~~n~~~~~~  173 (311)
                      .++..-|.++...+..++|..|.+-........++|.+-.++.+.-..+.....+.+.|.+  +||.+++++.+...+.+
T Consensus       108 ~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~  187 (274)
T cd07303         108 AKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGG  187 (274)
T ss_pred             EEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEE
Confidence            3455556666666666677666654433334567777766666543223345677888988  89999999977678899


Q ss_pred             EEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEE
Q 021528          174 SYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTS  252 (311)
Q Consensus       174 s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~  252 (311)
                      ||+|+|+++|++|+|+.|....+.+.+.+|.+|..++ .++++++++.|.+++.|.|+++|.+.+....+.+....+-.+
T Consensus       188 Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~~~~~Kf  267 (274)
T cd07303         188 SIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHKAGGHKL  267 (274)
T ss_pred             EEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEecCCCCCeeE
Confidence            9999999999999999999766788999999999997 889999999999999999999998888777777766544444


Q ss_pred             EEEE
Q 021528          253 SVGY  256 (311)
Q Consensus       253 ~vG~  256 (311)
                      .+|.
T Consensus       268 G~gl  271 (274)
T cd07303         268 GLGL  271 (274)
T ss_pred             EEEE
Confidence            4444

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=99.49  E-value=8.7e-11  Score=107.22  Aligned_cols=155  Identities=25%  Similarity=0.299  Sum_probs=130.2

Q ss_pred             cceEEEEEEeCCceEEEEEECC--CccEEEEEEeeccccceeEEEEEecCCC-CcceeeEEEEEEeC----CeEEEEEEc
Q 021528           94 AHYEFGANYIDPKLMLIGRVLT--DGRLNARVKCDLSDNLSLKANAQLTNEP-HMSHGMINFDYKGK----DYRTQFQFG  166 (311)
Q Consensus        94 ~~y~f~~~y~~~~~~l~~~~d~--dg~L~~~~~~~~~~~l~~k~~~~~~~~~-~~~~~~~~~dy~g~----d~t~~lk~~  166 (311)
                      ..+++++.|.++...+..+++.  .+.+.+.+...+.|++.+-.++.+.... ....+.+.+.|.++    ++++++++.
T Consensus       105 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~  184 (273)
T PF01459_consen  105 KSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLS  184 (273)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-
T ss_pred             eeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEc
Confidence            4788999999998877887776  6777888888889999999888875533 23334556777777    999999994


Q ss_pred             -CCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCe-EEEEEEcccceEEEEEEEEccCCeEEEEEeeee
Q 021528          167 -NGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKM-VATGQVASTGMVALSYVQKLSEKVSLATDLMYN  244 (311)
Q Consensus       167 -n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~-~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~  244 (311)
                       +...+.+||+|++++++.+|+|+.|....+.+.+.+|.+|..++. ++.++|++.|.++++|-++++|.+.+++..+.+
T Consensus       185 ~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d  264 (273)
T PF01459_consen  185 NNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELD  264 (273)
T ss_dssp             ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEc
Confidence             677889999999999999999999999888899999999999998 899999999999999999999999998888887


Q ss_pred             eccc
Q 021528          245 YMSR  248 (311)
Q Consensus       245 ~~~~  248 (311)
                      ....
T Consensus       265 ~~~~  268 (273)
T PF01459_consen  265 HKNN  268 (273)
T ss_dssp             TT-C
T ss_pred             cCCC
Confidence            6544

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=99.22  E-value=3.5e-09  Score=96.26  Aligned_cols=118  Identities=19%  Similarity=0.348  Sum_probs=103.1

Q ss_pred             CCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCC-eEEEEEEcccc
Q 021528          143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVATGQVASTG  221 (311)
Q Consensus       143 ~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~-~~~~~~~~~~g  221 (311)
                      .+...+.+.+.|..+|+++++.+.|-..+.+|++|+|...+..|.++.|......+.+++|.+|..|+ .++.+++++.+
T Consensus       161 ~~~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g  240 (281)
T KOG3126|consen  161 GKLTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAG  240 (281)
T ss_pred             CcEeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCc
Confidence            34567789999999999999999988889999999999999999999999987789999999999987 55999999999


Q ss_pred             eEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEe
Q 021528          222 MVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYIL  260 (311)
Q Consensus       222 ~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~  260 (311)
                      .+++.|.|+++|++.++...+++...-..-..+|..+.|
T Consensus       241 ~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~  279 (281)
T KOG3126|consen  241 LAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL  279 (281)
T ss_pred             eeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence            999999999999999999998887643322667766655

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=98.81  E-value=6.1e-07  Score=75.02  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             cceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEcc-----
Q 021528          145 MSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVAS-----  219 (311)
Q Consensus       145 ~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~~-----  219 (311)
                      ...+.+..-|.++..-+.-.+.+.+-+.+.+.+.+++++...+.++.+..+ ....++-..|+++||++++++.|     
T Consensus        55 ~p~Y~FgA~y~~~~~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~~-~~~~Q~e~DY~G~Dft~~lk~~Np~~~~  133 (161)
T TIGR00989        55 LPPYAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQ-PDMCQFEHDHLGDDFSASLKAINPSFLE  133 (161)
T ss_pred             CCCceeeeEecCCcEEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCCC-CceEEEEEEecCCeEEEEEEEcCccccc
Confidence            446888888888776666677766677889999999999999999987543 36677889999999999999887     


Q ss_pred             ---cceEEEEEEEEccCCeEEEEEeeee
Q 021528          220 ---TGMVALSYVQKLSEKVSLATDLMYN  244 (311)
Q Consensus       220 ---~g~~~~sY~~kvs~~l~lg~el~~~  244 (311)
                         .|.+.++|.|.|+|++.+|.|+.|+
T Consensus       134 ~~~sGi~v~sylQsVTp~LaLG~E~~yq  161 (161)
T TIGR00989       134 KGLTGIFVGSYLQSVTPRLGLGLEALWQ  161 (161)
T ss_pred             ccceEEEEEeeeehhCcceeeeeeeEeC
Confidence               3588999999999999999999985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=4.3e-08  Score=89.93  Aligned_cols=241  Identities=17%  Similarity=0.173  Sum_probs=163.2

Q ss_pred             CCCCcccccccCCCCCCCcHHHhHHHHhhccCccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceE
Q 021528           18 AKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYE   97 (311)
Q Consensus        18 ~~~~~~~~~~~~~l~~Pg~f~dl~ke~~~~l~~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~   97 (311)
                      ++++..+..+...++.+..++.++..+-+-|..+.+...++.-...+..++.++|.|.++++..                
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~Npgt~e~L~~~~~~~p~~~~g~kl~v~k~Ls~~fqvs~t~~----------------   69 (308)
T KOG3296|consen    6 AKSKLVEAVPYSNLSRRACYNLLNPGTVEELHSEASVDPTLSEGVKLGVNKGLSNHFQVSPTFV----------------   69 (308)
T ss_pred             CCccccccccccccccccccccCCcHHHHHhhhhhccCceeecceEeeecccccCceEecccee----------------
Confidence            4556677778888899999999999988878888877777777777788888888777765310                


Q ss_pred             EEEEEeCCceEEEEEECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEEEcCCCeeEEEEEE
Q 021528           98 FGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQ  177 (311)
Q Consensus        98 f~~~y~~~~~~l~~~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk~~n~~~~~~s~lq  177 (311)
                                     +++.+    ...+.+.+-...  ..+..+             ....--+.-.+.+.+-..+..++
T Consensus        70 ---------------ls~~~----~sg~~fg~ty~~--~~q~~~-------------~~~~~il~G~vD~~Gslna~l~~  115 (308)
T KOG3296|consen   70 ---------------LSHIA----ASGYRFGPTYVY--TFQASP-------------TEAFLILRGDVDNDGSLNARLIH  115 (308)
T ss_pred             ---------------cccCc----cccceeccceee--eecccc-------------CCCcceEEEecCCCCchhheeec
Confidence                           00001    111111111101  111111             11111111122233334567777


Q ss_pred             eecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEEEEEc-----ccceEEEEEEEEccCCeEEEEEeeeee--cccee
Q 021528          178 NVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVATGQVA-----STGMVALSYVQKLSEKVSLATDLMYNY--MSRDV  250 (311)
Q Consensus       178 ~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~~~~~-----~~g~~~~sY~~kvs~~l~lg~el~~~~--~~~~~  250 (311)
                      .++++|...+.++.+.. +....++-..|...++++.....     ..|++.++|.|.+++++.+|.|+.|..  ..+++
T Consensus       116 ~l~~~Lr~K~~~q~~~~-k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s  194 (308)
T KOG3296|consen  116 QLTDNLRSKVALQIQQS-KEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLYQRRPGPEES  194 (308)
T ss_pred             ccchhhHHHHHHHhcch-hhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEeccCCCcccc
Confidence            77888888887777663 35667888889999888877766     467888999999999999999999988  46789


Q ss_pred             EEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecC--CCCeeeeEEEEe
Q 021528          251 TSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHR--KKDYKFGFGLTV  310 (311)
Q Consensus       251 ~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~--~~~~kfG~gl~~  310 (311)
                      .+++++||...++...+.....|..+.+|.+. .+.+......+.|..  +.+.-+++|+.+
T Consensus       195 ~ls~a~RY~~~~~~~~~t~g~~g~~~~y~~r~-~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  195 GLSYAGRYEHSNWDATVTLGQQGLTGTYYQRA-VEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             ceeeeeeeeecceeeEEecccccceehhhhhh-hhhhccceeEeeecccCCcceEEEEEeec
Confidence            99999999998888888888899999999554 455555555555543  445666666554

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=97.49  E-value=0.0016  Score=58.82  Aligned_cols=137  Identities=20%  Similarity=0.313  Sum_probs=93.9

Q ss_pred             EEEEEECC-CccEEEEEEeeccccceeEEEEEecCC---CCcceeeEEEEEEeCCeEEEEEEc-CCCeeEEEEEEee---
Q 021528          108 MLIGRVLT-DGRLNARVKCDLSDNLSLKANAQLTNE---PHMSHGMINFDYKGKDYRTQFQFG-NGALFGASYIQNV---  179 (311)
Q Consensus       108 ~l~~~~d~-dg~L~~~~~~~~~~~l~~k~~~~~~~~---~~~~~~~~~~dy~g~d~t~~lk~~-n~~~~~~s~lq~v---  179 (311)
                      ++-|++-- ...|.|=+..++.+.+.+.+.+.-.+.   .......+-+.+....|...+.+. +.+++++-.++.+   
T Consensus        86 LlYGRmylP~s~LeAl~ikRlsp~~Ql~~~~vS~~~~~~~~~~~ll~~lQ~dtgk~~~E~lyStd~~L~G~R~L~NFg~~  165 (260)
T PF12519_consen   86 LLYGRMYLPSSRLEALYIKRLSPTTQLLLKAVSSPHSGLPNGGTLLGYLQHDTGKYSQEYLYSTDDALLGFRGLYNFGPD  165 (260)
T ss_pred             EEEEEEecChhhhhhhhhhcCCHhHheeeeeeecccccCCCCCeEEEEEEecCCCCceEEEEEcCCceEEEEEEEecCCC
Confidence            44444432 344455455566776666555443322   223344556666666677776654 5666666555531   


Q ss_pred             -----------------------cCceeeeeEEEEeccCCceeeEEEEEEeC------CCeEEEEEEcc-cceEEEEEEE
Q 021528          180 -----------------------SPHLSLGGEVFWAGQHRKSGIGYAARYEN------DKMVATGQVAS-TGMVALSYVQ  229 (311)
Q Consensus       180 -----------------------t~~l~lG~e~~~~~~~~~t~~~~~~rY~~------~~~~~~~~~~~-~g~~~~sY~~  229 (311)
                                             -.+|++|+|+.|....+..+++.|+||..      .+.++++++|. .|.+..+|--
T Consensus       166 ~~~~~~~~~~~~~~~s~~~~~~~~~r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~  245 (260)
T PF12519_consen  166 PSKSNNSPNNSLYNNSRVDEERIYGRFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSV  245 (260)
T ss_pred             ccccccccccccccccccccccccceEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeee
Confidence                                   11899999999999888899999999954      35899999998 6999999999


Q ss_pred             EccCCeEEEEEeeee
Q 021528          230 KLSEKVSLATDLMYN  244 (311)
Q Consensus       230 kvs~~l~lg~el~~~  244 (311)
                      |.++.+++++.+.+|
T Consensus       246 k~s~~~a~~SrfdFN  260 (260)
T PF12519_consen  246 KASPNSAFCSRFDFN  260 (260)
T ss_pred             eccCCceEEeecccC
Confidence            999999998887653

Proteins in this family are typically between 415 and 473 amino acids in length.

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=96.60  E-value=0.75  Score=44.47  Aligned_cols=103  Identities=14%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             eEEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceee-EEEEEEeCC----CeEEEEEEcccceEEEEEEEEccC
Q 021528          159 YRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGI-GYAARYEND----KMVATGQVASTGMVALSYVQKLSE  233 (311)
Q Consensus       159 ~t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~-~~~~rY~~~----~~~~~~~~~~~g~~~~sY~~kvs~  233 (311)
                      .....++.-|..+.+++.+.++++|.+.+.+.|..=...... ...+.....    +........+.-.+.++.-++++|
T Consensus       260 ~~~~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~  339 (427)
T PF03349_consen  260 ADGEVDLDLPASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFND  339 (427)
T ss_dssp             EEEEEEEEB-EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSS
T ss_pred             ccceeeeeeceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCc
Confidence            344555666999999999999999999999999853332222 223333211    122333344556777888889999


Q ss_pred             CeEEEEEeeeeec-------------cceeEEEEEEEEEec
Q 021528          234 KVSLATDLMYNYM-------------SRDVTSSVGYDYILR  261 (311)
Q Consensus       234 ~l~lg~el~~~~~-------------~~~~~~~vG~~y~~~  261 (311)
                      ++++-+-+.|+..             .....+++|+.|++.
T Consensus       340 ~l~lr~G~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~~~  380 (427)
T PF03349_consen  340 KLTLRAGYAYDSSPIPDETRDPLLPDTDRHWLSAGAGYRFS  380 (427)
T ss_dssp             SEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESS
T ss_pred             CEEEEEEEEEeccccCccccchhhccCCcEEEEEeeEEEcC
Confidence            9999999988764             234568889988886

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=95.92  E-value=0.49  Score=46.42  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             EEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEE--EEE-EcccceEEEEEEEEccCCeEE
Q 021528          161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVA--TGQ-VASTGMVALSYVQKLSEKVSL  237 (311)
Q Consensus       161 ~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~--~~~-~~~~g~~~~sY~~kvs~~l~l  237 (311)
                      ..+++.=|.....++.+++.|+|.+.+.+.|-.=++...+.+...  ..+-..  .-. ..|.-.+.++--|+++|++++
T Consensus       278 ~~~~l~lP~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~--~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tl  355 (440)
T COG2067         278 GKLTLSLPASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT--FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTL  355 (440)
T ss_pred             ceEEEecCcEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc--CCCccccccccccccccEEeeeceeEcCccceE
Confidence            556666688899999999999999999999875443332332222  122111  111 334557778888899999999


Q ss_pred             EEEeeeeec-------------cceeEEEEEEEEEec-ceEEEE
Q 021528          238 ATDLMYNYM-------------SRDVTSSVGYDYILR-QCRLRG  267 (311)
Q Consensus       238 g~el~~~~~-------------~~~~~~~vG~~y~~~-~s~vk~  267 (311)
                      .+-+.|+..             +....+++|..|++. +.+|.+
T Consensus       356 ragiayD~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~  399 (440)
T COG2067         356 RAGIAYDQSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA  399 (440)
T ss_pred             eeeeeecCCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence            999999765             113457888999885 345553

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=95.82  E-value=2.1  Score=42.01  Aligned_cols=100  Identities=10%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             EEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeE--EEEEEcccceEEEEEEEEccCCeEEE
Q 021528          161 TQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV--ATGQVASTGMVALSYVQKLSEKVSLA  238 (311)
Q Consensus       161 ~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~--~~~~~~~~g~~~~sY~~kvs~~l~lg  238 (311)
                      ...++.-|..+.++..|+++|+|.+.+.+.|..=+....+.+  .+......  ......|.-.+.++.-++++|++.+-
T Consensus       279 ~~~~~~~P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i--~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LR  356 (435)
T PRK10716        279 GSLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKA--TSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFR  356 (435)
T ss_pred             cEEeecCCcEEEEEeEEecCCcEEEEEEEEEeeecccceEEE--EeCCCcceecccccceeeeEEEeeEEEECCCCeEEE
Confidence            344555688889999999999999999999975333222222  12111111  11112344466777778999999999


Q ss_pred             EEeeeeec-------------cceeEEEEEEEEEecc
Q 021528          239 TDLMYNYM-------------SRDVTSSVGYDYILRQ  262 (311)
Q Consensus       239 ~el~~~~~-------------~~~~~~~vG~~y~~~~  262 (311)
                      +-+.|+..             ..+..+++|+.|++.+
T Consensus       357 aG~~yd~spv~~~~r~~~~Pd~dr~~~s~G~~y~~~~  393 (435)
T PRK10716        357 TGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNK  393 (435)
T ss_pred             EeeEeccCCCCcCcccccccCCCCeEEEeeeEEEcCC
Confidence            99988732             2345689999998853

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=89.78  E-value=21  Score=34.98  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=10.8

Q ss_pred             eeeEEEEEEeCC-CeEEEEEE
Q 021528          198 SGIGYAARYEND-KMVATGQV  217 (311)
Q Consensus       198 t~~~~~~rY~~~-~~~~~~~~  217 (311)
                      -.+.+|+.|+.. +|++.+-+
T Consensus       339 w~~~~G~~Y~~n~~l~LRaG~  359 (435)
T PRK10716        339 YRIALGTTYYYDDNWTFRTGI  359 (435)
T ss_pred             eEEEeeEEEECCCCeEEEEee
Confidence            446666677643 35554443

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=88.92  E-value=16  Score=36.03  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=26.9

Q ss_pred             EEEEEcccceEEEEEEEEccCCeEEEEEeeeee
Q 021528          213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNY  245 (311)
Q Consensus       213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~  245 (311)
                      +.+++.-...+.++++|+++|++.+..++.|..
T Consensus       278 ~~~~l~lP~~~el~~~~~~~d~w~~~~s~~wT~  310 (440)
T COG2067         278 GKLTLSLPASAELSGQHKVADQWAIHGSVKWTD  310 (440)
T ss_pred             ceEEEecCcEEEEeeeeccCCCeEEEEEEEEee
Confidence            445555566788999999999999999999854

>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT

Probab=87.85  E-value=27  Score=33.64  Aligned_cols=84  Identities=12%  Similarity=0.069  Sum_probs=45.4

Q ss_pred             EEEEEcccceEEEEEEEEccCCeEEEEEeeeee-ccceeEEEEEEEEEe----cceEEEEEEcCCceEEeeeeecccCce
Q 021528          213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNY-MSRDVTSSVGYDYIL----RQCRLRGKIDSNGCAAAYLEERLNMGL  287 (311)
Q Consensus       213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~-~~~~~~~~vG~~y~~----~~s~vk~~ids~g~v~~~~e~~l~p~~  287 (311)
                      ....+.-...+.+++.++++|++.+.++++|.. +.-+...........    ....+.-..++.+.+.+..|.++.|.+
T Consensus       262 ~~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l  341 (427)
T PF03349_consen  262 GEVDLDLPASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKL  341 (427)
T ss_dssp             EEEEEEB-EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSE
T ss_pred             ceeeeeeceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCE
Confidence            344455566889999999999999999999953 221111111111110    011233333445556666666666665


Q ss_pred             EEEEEEEEe
Q 021528          288 NFILSAEID  296 (311)
Q Consensus       288 ~l~lS~~ld  296 (311)
                      +|-..-..|
T Consensus       342 ~lr~G~~y~  350 (427)
T PF03349_consen  342 TLRAGYAYD  350 (427)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            555555555

These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....

>PRK10993 outer membrane protease; Reviewed

Probab=86.77  E-value=25  Score=33.01  Aligned_cols=176  Identities=16%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             EEEEC--CCccEEEEEEeeccccceeEEEEEec--CCCCcceeeEEEEEEeCC---eEE-------EEEEcCCCeeEEEE
Q 021528          110 IGRVL--TDGRLNARVKCDLSDNLSLKANAQLT--NEPHMSHGMINFDYKGKD---YRT-------QFQFGNGALFGASY  175 (311)
Q Consensus       110 ~~~~d--~dg~L~~~~~~~~~~~l~~k~~~~~~--~~~~~~~~~~~~dy~g~d---~t~-------~lk~~n~~~~~~s~  175 (311)
                      +-+|.  +-..|.+++..++.++|++.....+.  .+.   ..+.+-||...+   |+=       .+...+.--+.+.+
T Consensus        62 qLdW~~~n~~iik~~~~~~~~~~lsl~a~gw~~l~s~~---G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~  138 (314)
T PRK10993         62 QLDWKIKNAAIIKGDINWDLLPRLSLGASGWTTLASGG---GHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKG  138 (314)
T ss_pred             EeeccccCceEEEeecccccccceEEeeeEEEEEecCC---CccccccccCCCCCCCcceecCCCCchhhhhhcceecce
Confidence            44554  44577889999999999998886543  211   112233333221   111       11111111112222


Q ss_pred             EEeecCceeeeeEEEEeccCCceeeEEEEEEeC--C---CeEEEEEEcccceEEEEEEEEcc-CCeEEEEEeeeeeccce
Q 021528          176 IQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEN--D---KMVATGQVASTGMVALSYVQKLS-EKVSLATDLMYNYMSRD  249 (311)
Q Consensus       176 lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~--~---~~~~~~~~~~~g~~~~sY~~kvs-~~l~lg~el~~~~~~~~  249 (311)
                      .---.++..+|+-+.|+.. +..--++|+.|..  +   +.+.+   -+.+..+++|.|+.. |.+-++.+..++    .
T Consensus       139 w~l~~~~yklG~~aGyqy~-~~sw~A~GG~y~Y~~~~~r~~~g~---fPd~~~~I~Y~Q~f~~pyiGL~g~y~~~----~  210 (314)
T PRK10993        139 WLLQNPNYRLGVMAGYQET-RFSWTAYGGSYIYSNGGFRDDIGT---FPDGERGIGYKQRFKMPYIGLTGSYRYD----D  210 (314)
T ss_pred             eeecCCCceeeeEeeeEEE-eceeEccCceEEcCCCCCCCCccc---cCCCccceeeEEEecceeeeEEEEEEec----c
Confidence            2222566778887777762 3334456666544  3   22222   245678899999995 666666666653    2


Q ss_pred             eEEEEEEEEEe------------cceEEEEEEcCC--ceEEeeeeecccCceEEEEEEEEe
Q 021528          250 VTSSVGYDYIL------------RQCRLRGKIDSN--GCAAAYLEERLNMGLNFILSAEID  296 (311)
Q Consensus       250 ~~~~vG~~y~~------------~~s~vk~~ids~--g~v~~~~e~~l~p~~~l~lS~~ld  296 (311)
                      ..+....+|..            ++-++|-++++.  .-+.+...-.+.|..++-+++...
T Consensus       211 ~ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~  271 (314)
T PRK10993        211 FEFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYN  271 (314)
T ss_pred             EEEeeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEE
Confidence            33444444421            122344333332  224555566677777777777665

>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria

Probab=86.02  E-value=31  Score=32.51  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             EEEEEeecCceeeeeEEEEeccCC---------ceeeEEEEEEeCC-CeEEEEEEc-----------------ccceEEE
Q 021528          173 ASYIQNVSPHLSLGGEVFWAGQHR---------KSGIGYAARYEND-KMVATGQVA-----------------STGMVAL  225 (311)
Q Consensus       173 ~s~lq~vt~~l~lG~e~~~~~~~~---------~t~~~~~~rY~~~-~~~~~~~~~-----------------~~g~~~~  225 (311)
                      -.+.+.-...+++|+.+-|.....         ...+++...|..+ +|.+.++++                 +.....+
T Consensus       163 yql~~~~~~~lslg~slk~~t~d~~~~~GSGs~d~~l~ln~s~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~  242 (319)
T PF11383_consen  163 YQLYQNDHHGLSLGGSLKYPTGDSGRFTGSGSFDQALQLNYSYRYGSKHSLYATLGYTFRGDSDVLEGIPYRNNTWFGGL  242 (319)
T ss_pred             EEEecCCCceEEEEEEEEecCCCcccccCCccccceEEEEeeeccCCcceeeeeeeEEEecCcccccccccccceEEEEE
Confidence            344555556888888888876431         2233444444555 554433321                 1235678


Q ss_pred             EEEEEccCCeEEEEEeeeeec---------cceeEEEEEEEEEe-cceEEEEEE
Q 021528          226 SYVQKLSEKVSLATDLMYNYM---------SRDVTSSVGYDYIL-RQCRLRGKI  269 (311)
Q Consensus       226 sY~~kvs~~l~lg~el~~~~~---------~~~~~~~vG~~y~~-~~s~vk~~i  269 (311)
                      +|-.+++|++.+-+|+.+...         +....+++|+||.+ +.+.+-..+
T Consensus       243 g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~  296 (319)
T PF11383_consen  243 GYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISV  296 (319)
T ss_pred             EEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEE
Confidence            888888999988888887543         22356788888888 555444433

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=83.50  E-value=41  Score=31.87  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             eEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC--
Q 021528          222 MVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK--  299 (311)
Q Consensus       222 ~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~--  299 (311)
                      .+.++.-|.+++++.+-+.+.|...               +..=..+-|....+++.++-++++.+.|.+........  
T Consensus       298 ~~~~~~~h~~~~~l~~~~~~~~~~~---------------~y~~~~r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~  362 (381)
T PF10082_consen  298 SVSLGWTHQLTPRLSLSLSAGYENR---------------DYQGSDREDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSN  362 (381)
T ss_pred             EEEEEEEEEeeeeEEEEEEEEEEEe---------------EcCCCCceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCC
Confidence            3456666666666666666665433               11111144555556666666665544433333332221  


Q ss_pred             ------CCeeeeEEEEe
Q 021528          300 ------KDYKFGFGLTV  310 (311)
Q Consensus       300 ------~~~kfG~gl~~  310 (311)
                            +.+.+++++.+
T Consensus       363 ~~~~~y~~n~v~l~l~~  379 (381)
T PF10082_consen  363 IPSYDYDRNRVGLGLTY  379 (381)
T ss_pred             CCCCceEeEEEEEEEEE
Confidence                  24666666653

>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family

Probab=83.11  E-value=61  Score=33.57  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             EEEEEEEEccCCeEEEEEeeeeeccc------------------eeEEEEEEEEEec-ceEEEEEEcCCceEEeeee-ec
Q 021528          223 VALSYVQKLSEKVSLATDLMYNYMSR------------------DVTSSVGYDYILR-QCRLRGKIDSNGCAAAYLE-ER  282 (311)
Q Consensus       223 ~~~sY~~kvs~~l~lg~el~~~~~~~------------------~~~~~vG~~y~~~-~s~vk~~ids~g~v~~~~e-~~  282 (311)
                      +.+.|...+.+++.+++++.|....-                  .-.+.++++|.+. +..+++..-..-...--|+ ..
T Consensus       538 lgl~~~~~~~~~LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~d~Dy~~~~  617 (649)
T TIGR03509       538 AGLTYEGLLDLKLSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYSDNDYAYNN  617 (649)
T ss_pred             EEeEeccccCCcEEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEeecchhhcC
Confidence            44555555667777777777744321                  1335666666653 3333333211101111111 12


Q ss_pred             ccC-ce-EEEEEEEEecCCCCeeeeEEEEe
Q 021528          283 LNM-GL-NFILSAEIDHRKKDYKFGFGLTV  310 (311)
Q Consensus       283 l~p-~~-~l~lS~~ld~~~~~~kfG~gl~~  310 (311)
                      +.+ .+ .+..=|.++|.=+.|.+|+.++.
T Consensus       618 ~~~~~~~~~~~~g~~~~~Y~ah~~~~s~~y  647 (649)
T TIGR03509       618 TAYDTIATVTTLGDQNPNYNAHYLGVSYSY  647 (649)
T ss_pred             CCcccccccccccccCCCceeeEEEEEEEE
Confidence            222 11 22233667776678888888763

Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=80.73  E-value=32  Score=31.35  Aligned_cols=62  Identities=15%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             CeEEEEEeeeeeccceeEEEEEEEEEec-c-----eEEEEEEcC-CceEEeeeeecccCceEEEEEEEEec
Q 021528          234 KVSLATDLMYNYMSRDVTSSVGYDYILR-Q-----CRLRGKIDS-NGCAAAYLEERLNMGLNFILSAEIDH  297 (311)
Q Consensus       234 ~l~lg~el~~~~~~~~~~~~vG~~y~~~-~-----s~vk~~ids-~g~v~~~~e~~l~p~~~l~lS~~ld~  297 (311)
                      ++.+|+|+=|.......-++.|.||... .     -++...+|- -|.|++.|--+-.+  .++||..+|+
T Consensus       191 r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~--~~a~~SrfdF  259 (260)
T PF12519_consen  191 RFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASP--NSAFCSRFDF  259 (260)
T ss_pred             eEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccC--CceEEeeccc
Confidence            8999999999998888899999999763 2     268888988 89999999888766  5788888875

Proteins in this family are typically between 415 and 473 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3emn_X	295	Voltage-dependent anion-selective channel protein;	3e-41

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  144 bits (363), Expect = 3e-41
 Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 21/298 (7%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
                + ++  P  Y ++ + A               +  GL  K  L      G  E  
Sbjct: 5   HHHHHHGSMAVPPTYADLGKSARDVFTK--------GYGFGL-IKLDLKTKSENGL-EFT 54

Query: 83  SQSTETIKIPTAHYEFGANYIDPK--LMLIGRVLTDGRLNARVKCD--LSDNLSLKANAQ 138
           S  +   +    +      Y   +  L    +  TD  L   +  +  L+  L L  ++ 
Sbjct: 55  SSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSS 114

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV--SPHLSLGGEV-FWAGQH 195
            +      +  I   YK +               +     V        G ++ F   + 
Sbjct: 115 FSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKS 174

Query: 196 RKSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVG 255
           R +   +A  Y+ D+      V        S  QK+++K+  A +L +   + +    + 
Sbjct: 175 RVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIA 234

Query: 256 YDYIL-RQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKD---YKFGFGLT 309
             Y +        K++++        + L  G+   LSA +D +  +   +K G GL 
Sbjct: 235 AKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE 292

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	99.57
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	95.53
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	92.59
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	91.75
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	90.56
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	89.02
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	88.7
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	83.68
1i78_A	297	Protease VII; integral outer membrane protein, bet	83.11

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=7.2e-44  Score=327.42  Aligned_cols=270  Identities=16%  Similarity=0.228  Sum_probs=230.0

Q ss_pred             cCCCCCCCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc
Q 021528           28 YMNLPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK  106 (311)
Q Consensus        28 ~~~l~~Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~  106 (311)
                      ...+.+||.|.||+|.|||+|. +|+|+..||++++..++.+.++-+..-..           +.......+++.|..++
T Consensus        10 ~~~~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~-----------~~~~v~g~le~kyk~~~   78 (295)
T 3emn_X           10 HGSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANT-----------ETTKVNGSLETKYRWTE   78 (295)
T ss_dssp             ---CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEET-----------TTCCEEEEEEEEEEETT
T ss_pred             CCCcCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecC-----------CCCceeeEEEEEEEecC
Confidence            4568899999999999999985 67888899999998777555443332221           01234577899998876


Q ss_pred             --eEEEEEECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEE--E--cCCCeeEEEEEEe
Q 021528          107 --LMLIGRVLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ--F--GNGALFGASYIQN  178 (311)
Q Consensus       107 --~~l~~~~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk--~--~n~~~~~~s~lq~  178 (311)
                        +.+..+||+|++|.+++..  .+.+++++.+.+.+.|++..+..+++++|+.+++++.+.  +  .+|.+...-.+  
T Consensus        79 ~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~--  156 (295)
T 3emn_X           79 YGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL--  156 (295)
T ss_dssp             TTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE--
T ss_pred             CcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE--
Confidence              7899999999999998864  499999999999998876667899999999999988554  4  56844332233  


Q ss_pred             ecCceeeeeEEEEeccCC-ceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEE
Q 021528          179 VSPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYD  257 (311)
Q Consensus       179 vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~  257 (311)
                      .+++|.+|+|+.|+...+ .+.++++++|+.++|++++++++...+.+|||||++|++++|+|+.|+.+.+++.++||++
T Consensus       157 g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~k  236 (295)
T 3emn_X          157 GYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAK  236 (295)
T ss_dssp             EETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEE
Confidence            479999999999998764 5889999999999999999999988999999999999999999999999999999999999


Q ss_pred             EEec-ceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC---CCeeeeEEEEe
Q 021528          258 YILR-QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFGFGLTV  310 (311)
Q Consensus       258 y~~~-~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~---~~~kfG~gl~~  310 (311)
                      |.++ +++|||+||++|++++.||++|+|+++|+||++||+++   +.||||+||+|
T Consensus       237 y~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l  293 (295)
T 3emn_X          237 YQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF  293 (295)
T ss_dssp             ECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEE
Confidence            9995 78999999999999999999999999999999999986   78999999986

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=99.57  E-value=5.6e-12  Score=115.44  Aligned_cols=164  Identities=16%  Similarity=0.288  Sum_probs=127.0

Q ss_pred             ceEEEEEEeCCceEEEEEECC--Cc-cEEEEEEeeccccceeEEEEEecCC-CCcceeeEEEEEEeCCeEEEEEEcCCCe
Q 021528           95 HYEFGANYIDPKLMLIGRVLT--DG-RLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGAL  170 (311)
Q Consensus        95 ~y~f~~~y~~~~~~l~~~~d~--dg-~L~~~~~~~~~~~l~~k~~~~~~~~-~~~~~~~~~~dy~g~d~t~~lk~~n~~~  170 (311)
                      ..++.+.|..+...+.+.+|-  .+ .+++..... .+++.+-.++.+.-. .....+.+.+.|..+||.+++++.+...
T Consensus       123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~  201 (295)
T 3emn_X          123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTE  201 (295)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTE
T ss_pred             ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCe
Confidence            467888999988777666654  23 333322221 367766666665432 3345688899999999999999988788


Q ss_pred             eEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCC-CeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc-c
Q 021528          171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND-KMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS-R  248 (311)
Q Consensus       171 ~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~-~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~-~  248 (311)
                      +.+||+|+|++++++|+|+.|....+.+.+++|++|..+ +.+++++|++.+.+++.|.|+++|++.+....+.+... .
T Consensus       202 ~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~  281 (295)
T 3emn_X          202 FGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVN  281 (295)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTT
T ss_pred             EEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccC
Confidence            999999999999999999999987778999999999996 68899999999999999999999999888888887653 1


Q ss_pred             eeEEEEEEEEE
Q 021528          249 DVTSSVGYDYI  259 (311)
Q Consensus       249 ~~~~~vG~~y~  259 (311)
                      +....+|....
T Consensus       282 ~~~~K~Gl~l~  292 (295)
T 3emn_X          282 AGGHKLGLGLE  292 (295)
T ss_dssp             TSCCEEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            23344444443

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=95.53  E-value=0.79  Score=43.41  Aligned_cols=96  Identities=10%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             EEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEE--EEEcccceEEEEEEEEccCCeEEEEEe
Q 021528          164 QFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVAT--GQVASTGMVALSYVQKLSEKVSLATDL  241 (311)
Q Consensus       164 k~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~--~~~~~~g~~~~sY~~kvs~~l~lg~el  241 (311)
                      ++.-|..+.++..+.++++|.+.+++.|..-+....+.  ..+........  ....+.-.+.++-.++++|++++-+-+
T Consensus       268 ~~~lP~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~--~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~  345 (427)
T 3pgu_A          268 TLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLK--ATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI  345 (427)
T ss_dssp             EEEECEEEEEEEEEEEETTEEEEEEEEEEEESSCSCEE--EEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEE
T ss_pred             EecCCcEEEEEEEEecCCCEEEEEEEEEEEeccccceE--EEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEE
Confidence            33348889999999999999999999998544322111  12211111111  112234466777788888888888888


Q ss_pred             eeeec-------------cceeEEEEEEEEEec
Q 021528          242 MYNYM-------------SRDVTSSVGYDYILR  261 (311)
Q Consensus       242 ~~~~~-------------~~~~~~~vG~~y~~~  261 (311)
                      .|+..             .....+++|+.|++.
T Consensus       346 ~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~  378 (427)
T 3pgu_A          346 AFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFN  378 (427)
T ss_dssp             EEEECCCCGGGCBTTBCCSCEEEEEEEEEEESS
T ss_pred             EEccCCCCcccccccccCCCCEEEEEeEEEEcC
Confidence            88654             124457888888874

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=92.59  E-value=7.2  Score=36.97  Aligned_cols=99  Identities=13%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             EEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEE--EEEEcccceEEEEEEEEccCCeEE
Q 021528          160 RTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVA--TGQVASTGMVALSYVQKLSEKVSL  237 (311)
Q Consensus       160 t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~--~~~~~~~g~~~~sY~~kvs~~l~l  237 (311)
                      ....++.-|..+.++..+.++++|.+.+++.|..-+....+.  .+... ....  .....+.-.+.++-.++++|++++
T Consensus       277 ~~~~~~~lP~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~--~~~~~-~~~~~~~~~~~d~~~~~lG~eY~~~~~~tl  353 (451)
T 3dwo_X          277 SASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLT--LKSHG-NTIVSIPYTYRNTWTLAVGGDYKVTDQWTM  353 (451)
T ss_dssp             EEEEECCBCCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEE--EEETT-EEEEEEECCCCCEEEEEEEEEEESSSSEEE
T ss_pred             ceEEEecCCcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeE--EEcCC-ccccccccCceeeeEEEEEEEEEeCCCEEE
Confidence            344555668899999999999999999999998644321111  11111 0111  111223445666777777777777


Q ss_pred             EEEeeeeec-------------cceeEEEEEEEEEec
Q 021528          238 ATDLMYNYM-------------SRDVTSSVGYDYILR  261 (311)
Q Consensus       238 g~el~~~~~-------------~~~~~~~vG~~y~~~  261 (311)
                      -+-+.|+..             .....+++|..|.+.
T Consensus       354 RaG~~yd~sp~~~~~~~~~~P~~~~~~~s~G~~y~~~  390 (451)
T 3dwo_X          354 RAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQ  390 (451)
T ss_dssp             EEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEECS
T ss_pred             EEEEEEccCCCCcccccccccCCCCEEEEEeEEEEec
Confidence            777777543             123456777777765

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=91.75  E-value=8.5  Score=36.00  Aligned_cols=97  Identities=8%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             EEEcCCCeeEEEEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCC------eEEEEEEcccceEEEEEEEEccCCe
Q 021528          163 FQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDK------MVATGQVASTGMVALSYVQKLSEKV  235 (311)
Q Consensus       163 lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~------~~~~~~~~~~g~~~~sY~~kvs~~l  235 (311)
                      .++.-|..+.++..++++++|.+.+++.|..-.. ...  +..++..+.      ........+.-.+.++--+++++++
T Consensus       273 ~~~~lP~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~  350 (441)
T 3bry_A          273 RNFQMPAQLTVGISHQFNDQLSVSADYQRVFWSSVMKD--MNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKW  350 (441)
T ss_dssp             ECCCBCCEEEEEEEEESSSSEEEEEEEEEECGGGCCSE--EEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTE
T ss_pred             cccCCccEEEEeEEEEeCCCEEEEEEEEEEEccchhhh--eeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCe
Confidence            3344588899999999999999999999976333 221  222332211      1122222334456667777777877


Q ss_pred             EEEEEeeeeecc-------------ceeEEEEEEEEEec
Q 021528          236 SLATDLMYNYMS-------------RDVTSSVGYDYILR  261 (311)
Q Consensus       236 ~lg~el~~~~~~-------------~~~~~~vG~~y~~~  261 (311)
                      ++-+-+.|+...             .+..+++|+.|.+.
T Consensus       351 ~lRaG~~yd~s~~~~~~~~~~~P~~~~~~~s~G~gy~~~  389 (441)
T 3bry_A          351 TFRGGFHYAQEAIPGNMLLAVVPATPTTSLTGGVSYAIG  389 (441)
T ss_dssp             EEEEEEEEEEC---------------CEEEEEEEEEESS
T ss_pred             EEEEeeecccCCCCcccccccccCcCceEEEeeeEEEcC
Confidence            777777775531             24456777777764

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=90.56  E-value=11  Score=35.23  Aligned_cols=95  Identities=8%  Similarity=0.069  Sum_probs=56.2

Q ss_pred             EcCCCeeEEEEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCCeEE----EEEEcccceEEEEEEEEccCCeEEEE
Q 021528          165 FGNGALFGASYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVA----TGQVASTGMVALSYVQKLSEKVSLAT  239 (311)
Q Consensus       165 ~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~----~~~~~~~g~~~~sY~~kvs~~l~lg~  239 (311)
                      +.-|..+.++..++++++|.+.+++.|..-+. ...+  .+++..+.-..    .....+.-.+.++--++++|++++-+
T Consensus       275 ~~lP~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l--~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa  352 (439)
T 3bs0_A          275 FEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSM--NVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRA  352 (439)
T ss_dssp             CCCCCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-C--CCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEE
T ss_pred             cCCCcEEEEeEEEEeCCCEEEEEEEEEEEccchhhhe--eeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEE
Confidence            44588899999999999999999999875332 1100  01111000000    00112334566667777778777777


Q ss_pred             Eeeeeec-------------cceeEEEEEEEEEec
Q 021528          240 DLMYNYM-------------SRDVTSSVGYDYILR  261 (311)
Q Consensus       240 el~~~~~-------------~~~~~~~vG~~y~~~  261 (311)
                      -+.|+..             ..+..+++|+.|.+.
T Consensus       353 G~~yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~  387 (439)
T 3bs0_A          353 GYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFD  387 (439)
T ss_dssp             EEEECC------CCCTTSCCCCSEEEEEEEEEESS
T ss_pred             eeEcccCCCCcccccccccCccceEEEeeeEEEcC
Confidence            7777543             134567777777764

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=89.02  E-value=16  Score=34.61  Aligned_cols=57  Identities=21%  Similarity=0.395  Sum_probs=40.5

Q ss_pred             EEEEEcccceEEEEEEEEccCCeEEEEEeeeeec----------------------cceeEEEEEEEEEe-cceEEEEEE
Q 021528          213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNYM----------------------SRDVTSSVGYDYIL-RQCRLRGKI  269 (311)
Q Consensus       213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~----------------------~~~~~~~vG~~y~~-~~s~vk~~i  269 (311)
                      ....+.--..+.++..+++++++.+.+++.|..-                      +....+++|.+|++ +++++|+-+
T Consensus       278 ~~~~~~lP~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~  357 (451)
T 3dwo_X          278 ASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGV  357 (451)
T ss_dssp             EEEECCBCCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEE
T ss_pred             eEEEecCCcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEE
Confidence            3444554567888999999999999999887531                      12356788888888 566777644

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=88.70  E-value=16  Score=34.31  Aligned_cols=29  Identities=14%  Similarity=0.194  Sum_probs=23.5

Q ss_pred             EEcccceEEEEEEEEccCCeEEEEEeeee
Q 021528          216 QVASTGMVALSYVQKLSEKVSLATDLMYN  244 (311)
Q Consensus       216 ~~~~~g~~~~sY~~kvs~~l~lg~el~~~  244 (311)
                      .+.-...+.++..++++|++.+.++++|.
T Consensus       268 ~~~lP~~~~~g~~~~~~~~~~l~~d~~~~  296 (427)
T 3pgu_A          268 TLNLPEMWEVSGYNRVDPQWAIHYSLAYT  296 (427)
T ss_dssp             EEEECEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEecCCCEEEEEEEEEE
Confidence            33335678899999999999999999884

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=83.68  E-value=28  Score=32.36  Aligned_cols=53  Identities=11%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             EcccceEEEEEEEEccCCeEEEEEeeeeec----------------------------cceeEEEEEEEEEe-cceEEEE
Q 021528          217 VASTGMVALSYVQKLSEKVSLATDLMYNYM----------------------------SRDVTSSVGYDYIL-RQCRLRG  267 (311)
Q Consensus       217 ~~~~g~~~~sY~~kvs~~l~lg~el~~~~~----------------------------~~~~~~~vG~~y~~-~~s~vk~  267 (311)
                      +.-...+.++..+++++++.+.+++.|..-                            +....+++|++|.+ ++.++|+
T Consensus       275 ~~lP~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa  354 (441)
T 3bry_A          275 FQMPAQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRG  354 (441)
T ss_dssp             CCBCCEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEE
T ss_pred             cCCccEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEE
Confidence            333457889999999999999998887321                            11456788888888 5567776


Q ss_pred             EE
Q 021528          268 KI  269 (311)
Q Consensus       268 ~i  269 (311)
                      -+
T Consensus       355 G~  356 (441)
T 3bry_A          355 GF  356 (441)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1

Probab=83.11  E-value=25  Score=31.41  Aligned_cols=180  Identities=14%  Similarity=0.092  Sum_probs=95.4

Q ss_pred             EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCC-------eEEEEE--E--cCCCeeEEEEE
Q 021528          110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKD-------YRTQFQ--F--GNGALFGASYI  176 (311)
Q Consensus       110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d-------~t~~lk--~--~n~~~~~~s~l  176 (311)
                      +-+|..+  ..+.+++..++.+.+.+.+.....-. .....+-+-||..++       ++.+-+  +  .+.--+.+.+.
T Consensus        41 qL~W~~~n~~~~~~~~~~~l~~~~~l~~~g~~~~~-~~sG~M~D~DW~~~~~~~~~t~~S~h~~t~l~~a~~~dl~~~~~  119 (297)
T 1i78_A           41 QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLG-SRGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGW  119 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEECCSSSEEEEEEEEEESS-CEEEEEEEEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEeccCCCceEEEEEEEEecCCEEEEEEEEEecc-CCCCceeeccCCCCCCCCCCccceecCCCCCcceEEEEEEeEEE
Confidence            3366654  45667777888888888777765432 123333456664332       232211  1  11111223334


Q ss_pred             EeecCceeeeeEEEEeccCCceeeEEEEEEeCCC------eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecccee
Q 021528          177 QNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK------MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDV  250 (311)
Q Consensus       177 q~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~------~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~  250 (311)
                      --..+.+.+|..+-|+.. +..-.+.++.|.-++      .+.+.   +.+...++|.|+.. -.-+|+..+|...  ..
T Consensus       120 ll~~~~~~lg~~~Gy~y~-~~~w~A~gG~~~Y~~~~~~~~~~~~~---P~~~~~I~Y~Q~~~-~pyiGL~g~y~~~--~~  192 (297)
T 1i78_A          120 LLNEPNYRLGLMAGYQES-RYSFTARGGSYIYSSEEGFRDDIGSF---PNGERAIGYKQRFK-MPYIGLTGSYRYE--DF  192 (297)
T ss_dssp             EEECSSEEEEEEEEEEEE-EEEEEEECCEEEBCCTTCSSCBCCBC---CTTCSEEEEEEEEE-EEEEEEEEEEEET--TE
T ss_pred             EecCCceEEeEEcccEEE-eeeeeecCceEEcCCCCccccccccc---CCCccceeEEEEEE-eeeeeEEEEEeeC--cE
Confidence            345677788888877763 222233333333221      12221   34567899999995 4555555555543  24


Q ss_pred             EEEEEEEEEe--------------cceEEEEEEcC--CceEEeeeeecccCceEEEEEEEEec
Q 021528          251 TSSVGYDYIL--------------RQCRLRGKIDS--NGCAAAYLEERLNMGLNFILSAEIDH  297 (311)
Q Consensus       251 ~~~vG~~y~~--------------~~s~vk~~ids--~g~v~~~~e~~l~p~~~l~lS~~ld~  297 (311)
                      .+++.++|..              ++-+++-+.++  ...+++.+...|.|.+.|-+.+..+.
T Consensus       193 ~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~  255 (297)
T 1i78_A          193 ELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR  255 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence            4444444421              22334444443  23366677777888888888887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	89.59
d1i78a_	297	Outer membrane protease OMPT {Escherichia coli [Ta	86.9
d2pora_	301	Porin {Rhodobacter capsulatus [TaxId: 1061]}	84.9

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=5.5  Score=33.93  Aligned_cols=29  Identities=10%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             EcCCCeeEEEEEEeecCceeeeeEEEEec
Q 021528          165 FGNGALFGASYIQNVSPHLSLGGEVFWAG  193 (311)
Q Consensus       165 ~~n~~~~~~s~lq~vt~~l~lG~e~~~~~  193 (311)
                      +.-|..+.+.+-..+.++|.++++..|..
T Consensus       269 ~~lP~~~~~G~~~~~~~~~~l~~d~~~~~  297 (427)
T d1t16a_         269 LNLPEMWEVSGYNRVDPQWAIHYSLAYTS  297 (427)
T ss_dssp             EEECCEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ecCCcEEEEEEEEEeccceeEEEeeeecc
Confidence            33377778888888899999999998875

>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: OMPT-like
family: Outer membrane protease OMPT
domain: Outer membrane protease OMPT
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=7.9  Score=32.60  Aligned_cols=180  Identities=13%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             EECCCccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeC----Ce---EEEEE--E--cCCCeeEEEEEEeec
Q 021528          112 RVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGK----DY---RTQFQ--F--GNGALFGASYIQNVS  180 (311)
Q Consensus       112 ~~d~dg~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~----d~---t~~lk--~--~n~~~~~~s~lq~vt  180 (311)
                      ++++-..|.+++..++.++|.++...+..-.. ....+.+-||..+    ++   +.+=+  +  .+.--+.+.+.--..
T Consensus        45 ~~~n~~~i~~~~~~~~~~~l~l~~~g~~~~~~-~~G~M~DyDW~~~~~~~~wt~~S~h~~t~l~~a~~~dLn~~~~ll~~  123 (297)
T d1i78a_          45 KFNNAAIIKGAINWDLMPQISIGAAGWTTLGS-RGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWLLNE  123 (297)
T ss_dssp             EEEEEEEEEEEEEECCSSSEEEEEEEEEESSC-EEEEEEEEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             ecCCceEEEEEEEeeccCCeEEEEEEEEEccC-CCCceeccccCCCccCCCCcccccCCCCCcchhheeeeccceEEEec
Confidence            33445677889999999999998887654211 2233456666521    22   23211  1  111011222222234


Q ss_pred             CceeeeeEEEEeccCCceeeEEEEEEeCC--Ce-E-EEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEE
Q 021528          181 PHLSLGGEVFWAGQHRKSGIGYAARYEND--KM-V-ATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGY  256 (311)
Q Consensus       181 ~~l~lG~e~~~~~~~~~t~~~~~~rY~~~--~~-~-~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~  256 (311)
                      ++..+|+-+-|+... ..-..+++.|.-+  .. - -..++ ..+...++|.|+.. -.-+|+..+|....-+  +....
T Consensus       124 ~~y~lg~~~Gyqy~~-~~wtAyGGsy~y~~~~~~r~~~g~~-p~~~~~ItY~q~~~-~~yiGL~g~y~~~~~~--f~~~l  198 (297)
T d1i78a_         124 PNYRLGLMAGYQESR-YSFTARGGSYIYSSEEGFRDDIGSF-PNGERAIGYKQRFK-MPYIGLTGSYRYEDFE--LGGTF  198 (297)
T ss_dssp             SSEEEEEEEEEEEEE-EEEEEECCEEEBCCTTCSSCBCCBC-CTTCSEEEEEEEEE-EEEEEEEEEEEETTEE--EEEEE
T ss_pred             CCeEEEEEeeeEEee-cceEecCccEEcCCCCCcccccccc-CCCcceEEEEeEEe-EEEEeEEEEEEecceE--EEEEE
Confidence            556666666655421 1222233333211  11 0 01111 23355799999995 5556666666554333  44444


Q ss_pred             EE------------Eecc--eEEEEEEcCC--ceEEeeeeecccCceEEEEEEEEec
Q 021528          257 DY------------ILRQ--CRLRGKIDSN--GCAAAYLEERLNMGLNFILSAEIDH  297 (311)
Q Consensus       257 ~y------------~~~~--s~vk~~ids~--g~v~~~~e~~l~p~~~l~lS~~ld~  297 (311)
                      +|            -+++  ..++-+.+..  ..+.+....++.|...|-+++..++
T Consensus       199 ~ys~wv~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y~vt~~~s~~ve~~y~~  255 (297)
T d1i78a_         199 KYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR  255 (297)
T ss_dssp             EEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeceeeecCCCccceeccCCcccccccCCccEEEEEEEEEEEECCCEEEEEEEEEEE
Confidence            44            1222  2355444431  1256677889999999999999773

>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.90  E-value=2.8  Score=33.82  Aligned_cols=64  Identities=14%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             ceeeEEEEEEeCCCeEEEEEEcc--------cceEEEEEEEEccCCeEEEEEeeeeec-cceeEEEEEEEEEe
Q 021528          197 KSGIGYAARYENDKMVATGQVAS--------TGMVALSYVQKLSEKVSLATDLMYNYM-SRDVTSSVGYDYIL  260 (311)
Q Consensus       197 ~t~~~~~~rY~~~~~~~~~~~~~--------~g~~~~sY~~kvs~~l~lg~el~~~~~-~~~~~~~vG~~y~~  260 (311)
                      ...+.+++.|....+.+.+....        ...+.+.|-|++++++++-++..+... ..+.+..+|.+|.|
T Consensus       229 ~~~~~~~~~y~~g~~~~~~~y~~~~~~~~~~~~~~~lG~~Y~Lsk~t~ly~~y~~~~~d~~~~~~~~G~~~~F  301 (301)
T d2pora_         229 HKAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFKF  301 (301)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEEC
T ss_pred             eeeeeeeeEEEecceEEEEEEEEeccCCCCceeEEEEEEEEECCCCEEEEEEEEEEecCCCCeEEEEeeEEEC
Confidence            35677888888888776655432        236789999999999999999988654 45678899999976