Citrus Sinensis ID: 021533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISPQLAGFKRSRPNIWED
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccHHHHHHHHccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccHHHccccEEEEEcHHHHHHHHHcccccccccHHHHHcccEEEEcEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccHHHHccccccccccEEcccccccccccccccccccccccccccccHcccccccccccccccccEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkiqcdvcnkseasvfctadeaalcdtcdhrVHHANKlaskhhrfsllhpsskhfpicdVCQERRAFLFCQQDRAilcrdcdipihtanehtqKHNRFLLTGVKLSATSTLYtssvsksnpngcdssvpvpdanksiKKTVVSvapvnsnppsnseistssavtnsnggnsviaanecgtvsaSSISEYLemlpgwhvedlldsssdplgfckgndgtlpfldadldcnlssfsservgiwvpqaaspvqtclyssqsqtaghisfkdakevtgvkavssnrrytedvftvpqispqlagfkrsrpniwed
Flexible Loop (DISEMBL)
mkiqcdvcnkseASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTanehtqkhnRFLLTGVKLSATSTLYtssvsksnpngcdssvpvpDANKSIKKTVVSvapvnsnppsnseiSTSSAVTNSNGGNSVIAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSqtaghisfkdakevTGVKAVssnrrytedvftvpqispqlagfkrsrpniwed
Low Complexity Region (SEG)
MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSNPNGCDSSVPVPDANKSIKKTvvsvapvnsnppsnseistssAVTNSNGGNSVIAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISPQLAGFKRSRPNIWED
Disordered region (IsUnstruct)
****CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLY************************************************************IAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSS****AGHISFKDAKEVTGVKAV***RRYTEDVFTVPQ******************
Disordered Region (DISOPRED)
MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHT********N*FLLTG*****************************************************************************************MLPGWHVEDLLDS*********************LDCN********************************************************EDVFTV****************I***
Disordered Region (DISEMBL)
MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTL************CDSSVPVPDANKSIKKTVVSVAP******************NSNGGNSVIAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISPQLAGFKRSRPNIWED
Disordered Region (DISPRO)
*KIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSAT***************************************************************************SSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTA************************EDVFTVPQISPQ**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANECGTVSASSISEYLEMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISPQLAGFKRSRPNIWED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q9LQZ7	331	Probable salt tolerance-l	yes	no	0.919	0.864	0.466	3e-67
Q0IGM7	242	B-box zinc finger protein	no	no	0.630	0.809	0.539	4e-46
Q96288	248	Salt tolerance protein OS	no	no	0.385	0.483	0.578	1e-34
Q9SYM2	299	Probable salt tolerance-l	no	no	0.405	0.421	0.531	5e-33
Q9SID1	238	Salt tolerance-like prote	no	no	0.382	0.5	0.541	3e-30
Q9SK53	294	Zinc finger protein CONST	no	no	0.279	0.295	0.422	5e-15
O50055	355	Zinc finger protein CONST	no	no	0.356	0.312	0.343	2e-14
Q96502	347	Zinc finger protein CONST	no	no	0.340	0.305	0.353	3e-14
Q940T9	362	Zinc finger protein CONST	no	no	0.279	0.240	0.402	5e-14
Q39057	373	Zinc finger protein CONST	no	no	0.321	0.268	0.336	1e-12

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/328 (46%), Positives = 203/328 (61%), Gaps = 42/328 (12%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHF--PIC 58
           MKI+CDVC+K EASVFCTADEA+LC  CDH+VHHANKLASKH RFSLL+PSS +   P+C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 59  DVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSK 118
           D+CQ+++A LFCQQDRAILC+DCD  IH ANEHT+KH+RFLLTGVKLSATS++Y  +   
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 119 SNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANEC 178
           S+ +  +    VP +  SI        P+ S PP +++I   S +   NGG++ +  N+ 
Sbjct: 121 SSSSSSNQDFSVPGS--SISNPPPLKKPL-SAPPQSNKIQPFSKI---NGGDASV--NQW 172

Query: 179 GTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKG--NDGTLPFLDADLDCNLS---- 231
           G  S S+ISEYL + LPGWHVED LDSS    GF K   +DG LP+++ + D N      
Sbjct: 173 G--STSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDGVLPYMEPEDDNNTKRNNN 230

Query: 232 ----------SFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVS-- 279
                     S  S+ +GIWVPQ    + +   +       +I F    + T  + VS  
Sbjct: 231 NNNNNNNNTVSLPSKNLGIWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETSPEVVSFA 290

Query: 280 ----------SNRRYTED-VFTVPQISP 296
                     +N+R+ +D  FTVPQI+P
Sbjct: 291 PIQNMKQQGQNNKRWYDDGGFTVPQITP 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/213 (53%), Positives = 140/213 (65%), Gaps = 17/213 (7%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKI C VC+K EASVFC ADEAALC+ CD  VH ANKLA KH RFSL  P+ K  P+CD+
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           C ERRA LFCQ+DRAILCR+CDIPIH ANEHT+KHNRFLLTGVK+SA+ + Y  +   SN
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRA---SN 117

Query: 121 PNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSV------IA 174
            N    S       K+  K+V S  P ++   SN   ++SS+ T SN    +      ++
Sbjct: 118 SN----SAAAFGRAKTRPKSVSSEVPSSA---SNEVFTSSSSTTTSNCYYGIEENYHHVS 170

Query: 175 ANECGTVSASSISEYL-EMLPGWHVEDLLDSSS 206
            +  G+    SISEYL E LPGW VEDLL+  S
Sbjct: 171 DSGSGSGCTGSISEYLMETLPGWRVEDLLEHPS 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 87/121 (71%), Gaps = 1/121 (0%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC K+ A+V C ADEAALC  CD  +H ANKLASKH R  L   S+K FP CD+
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDI 59

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQE+ AF+FC +DRA+LCRDCD  IH AN  +  H RFL TG+K++ TST+ +  + K+ 
Sbjct: 60  CQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQ 119

Query: 121 P 121
           P
Sbjct: 120 P 120

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 84/128 (65%), Gaps = 2/128 (1%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQC+VC  +EA+V C ADEAALC  CD ++H ANKLA KH R  L   S+   P CD+
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL-SASASSIPKCDI 59

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQE   F FC QDRA+LCR CD+ IHT N H   H RFLLTG+K+   S + T   +KS+
Sbjct: 60  CQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES-IDTGPSTKSS 118

Query: 121 PNGCDSSV 128
           P   D ++
Sbjct: 119 PTNDDKTM 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 82/120 (68%), Gaps = 1/120 (0%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC K+ A++ C ADEAALC  CD  VH ANKLASKH R  L   S+K FP CD+
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTK-FPPCDI 59

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           C E+ AF+FC +DRA+LCRDCD   H  N  +  H RFL TG++++ +ST     V K++
Sbjct: 60  CLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNH 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 10/97 (10%)

Query: 5   CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
           CD C  + A++FC AD A LC  CD ++H ANKLAS+H R  L          C+VC++ 
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL----------CEVCEQA 57

Query: 65  RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLT 101
            A + C+ D A LC  CD  IH+AN  +++H R  +T
Sbjct: 58  PAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 17/128 (13%)

Query: 5   CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
           CD C  +  +V+C AD A LC +CD +VH AN+LAS+H R            +C  C+  
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVR----------VCQSCERA 61

Query: 65  RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSNPNGC 124
            A  FC+ D A LC  CD  IH+AN   ++H R  +  +      + Y+ S + +N + C
Sbjct: 62  PAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPI------SEYSYSSTATN-HSC 114

Query: 125 DSSVPVPD 132
           +++V  P+
Sbjct: 115 ETTVTDPE 122

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 5   CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
           CD C  +  +V+C AD A LC TCD RVH AN++AS+H R            +C  C+  
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVR----------VCQSCESA 65

Query: 65  RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
            A   C+ D A LC  CD  IH+AN   ++H R  +  +  ++ S++  S     N
Sbjct: 66  PAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETDADN 121

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 5   CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
           CD C  + A+++C  D A LC +CD +VH ANKLAS+H R  +          C+VC++ 
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM----------CEVCEQA 55

Query: 65  RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLT 101
            A + C+ D A LC  CD  IH+AN   ++H R  +T
Sbjct: 56  PAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 5   CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
           CD C  +  +V+C AD A LC +CD +VH AN++AS+H R            +C+ C+  
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVR----------VCESCERA 69

Query: 65  RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTS 114
            A   C+ D A LC  CD  +H+AN   ++H R  +  +  ++ S++ T+
Sbjct: 70  PAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTT 119

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
224066046	310	predicted protein [Populus trichocarpa]	0.958	0.961	0.644	4e-99
225458101	303	PREDICTED: probable salt tolerance-like	0.948	0.973	0.615	2e-97
224082950	283	predicted protein [Populus trichocarpa]	0.893	0.982	0.601	4e-93
255538820	309	Salt-tolerance protein, putative [Ricinu	0.951	0.957	0.605	8e-93
302398745	300	COL domain class transcription factor [M	0.935	0.97	0.582	4e-87
388505194	308	unknown [Lotus japonicus]	0.929	0.938	0.542	4e-78
388505596	308	unknown [Lotus japonicus]	0.961	0.970	0.540	2e-77
356553411	276	PREDICTED: probable salt tolerance-like	0.874	0.985	0.542	3e-75
356564331	278	PREDICTED: probable salt tolerance-like	0.871	0.974	0.543	5e-74
449469917	306	PREDICTED: probable salt tolerance-like	0.942	0.957	0.534	4e-69

>gi|224066046|ref|XP_002302002.1| predicted protein [Populus trichocarpa] gi|222843728|gb|EEE81275.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 207/321 (64%), Positives = 239/321 (74%), Gaps = 23/321 (7%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVCNK EASVFCTADEAALCDTCDHRVHHANKLASKH RFSLLHPSSK+FPICD+
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPSSKNFPICDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQE+RAFLFCQQDRAILCR+CD PIHTANEHTQKHNRFLLTGVKLSATS +Y SS S +N
Sbjct: 61  CQEKRAFLFCQQDRAILCRECDGPIHTANEHTQKHNRFLLTGVKLSATSAVYISSSSVTN 120

Query: 121 PNGCDSSVPVPDAN--------KSIKKTVVSVAPVNSNPPS-NSEISTSSAVTNSNGGNS 171
             G      VPD+         +SIKK V   APVNSNPP+  S +ST++ V  + GG++
Sbjct: 121 SGG----DLVPDSKSQQQQQQQQSIKKPVFD-APVNSNPPTVPSTLSTNTEV--NKGGDN 173

Query: 172 VIAANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDA-DLDCN 229
           ++     G+ ++S+ISEYL E LPGWHVED LDSS+ P GFCK +DG LPF+DA DL+ N
Sbjct: 174 LVTNEGFGSTTSSTISEYLMETLPGWHVEDFLDSSTTPFGFCKIDDGLLPFMDAHDLESN 233

Query: 230 LSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVF 289
           +SSFSSE +G+WVPQA S   T       Q  G   FK+ KE T +KA   NRR  +DVF
Sbjct: 234 MSSFSSESLGLWVPQAPSTPYTSQQYYYPQLVGQSGFKEIKETTNMKA---NRRLADDVF 290

Query: 290 TVPQIS-PQLAGFKRSRPNIW 309
           TVPQIS P     KRSRP +W
Sbjct: 291 TVPQISLPANISSKRSRP-LW 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458101|ref|XP_002280716.1| PREDICTED: probable salt tolerance-like protein At1g75540 [Vitis vinifera] gi|302142591|emb|CBI19794.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/315 (61%), Positives = 233/315 (73%), Gaps = 20/315 (6%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKI CDVC++ EA+VFCTADEAALCD CDHRVHHANKLASKH RFSLLHPS K  P+CDV
Sbjct: 1   MKIHCDVCSREEATVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPSPKQVPLCDV 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQE+RAFLFCQQDRAILCRDCD+PIHTANEHTQKHNRFLLTG+KLSATS LY+S+ S ++
Sbjct: 61  CQEKRAFLFCQQDRAILCRDCDLPIHTANEHTQKHNRFLLTGIKLSATSALYSSTTSVAD 120

Query: 121 PNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNS--NGGNSVIAANEC 178
                 SV    +  S+KK   SV P  S+PPS ++ S+ +   NS   GG++ + +   
Sbjct: 121 ------SVSDHKSQSSLKKP-ESVPPEISHPPSITKTSSPTTAINSINKGGDASLTSE-- 171

Query: 179 GTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCK-GNDGTLPF-LDADLDCNLSSFSS 235
             VS SSISEYL EMLPGWHVED LDS+S P GFCK   D  LP+ LDADLD NLSSFSS
Sbjct: 172 -GVSTSSISEYLIEMLPGWHVEDFLDSTSAPSGFCKSAGDDVLPYLLDADLDNNLSSFSS 230

Query: 236 ERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQIS 295
           E +G+WVPQA +P+    YS  S   G I  K++KE T +K   +++++ +DVFTVPQIS
Sbjct: 231 ENLGVWVPQAPTPLHPSQYS--SFMGGQIGLKESKEATTMKP--NSKKWGDDVFTVPQIS 286

Query: 296 PQLAGFKRSRPNIWE 310
           P   G KRSR + W+
Sbjct: 287 PPSVGSKRSR-SFWQ 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082950|ref|XP_002306904.1| predicted protein [Populus trichocarpa] gi|222856353|gb|EEE93900.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/314 (60%), Positives = 222/314 (70%), Gaps = 36/314 (11%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC+K EASVFCTADEAALCDTCDHRVHHANKLASKH RFSLLHPSSK+FPICD+
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPSSKNFPICDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQ++RAFLFCQQDRAILCRDCD PIHTANEHTQKHNRFLLTGVKLSATS +Y SS S   
Sbjct: 61  CQDKRAFLFCQQDRAILCRDCDGPIHTANEHTQKHNRFLLTGVKLSATSAVYMSSSSS-- 118

Query: 121 PNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANECGT 180
                                     +NSNPP+     +++ V N +G N ++ +   G+
Sbjct: 119 ------------------------VTMNSNPPAVPSTLSANTVINKDGDN-LVTSEGFGS 153

Query: 181 VSASSISEYL-EMLPGWHVEDLLDSSS-DPLGFCKGNDGTLPFLDA-DLDCNLSSFSSER 237
            ++S+ISEYL E LPGWHVE+ LDSSS  P GF K +DG LP++D  DL+ N+SSFSSE 
Sbjct: 154 TTSSTISEYLMETLPGWHVEEFLDSSSTTPFGFSKIDDGLLPYMDTHDLERNMSSFSSES 213

Query: 238 VGIWVPQAAS-PVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQIS- 295
           +G+WVPQA + P+ T       Q  G   FK+ KE T +KA   NRR T+D FTVPQIS 
Sbjct: 214 LGLWVPQAPTPPLCTSQQYYYPQLVGQSGFKETKESTNMKA---NRRLTDDAFTVPQISP 270

Query: 296 PQLAGFKRSRPNIW 309
           P   G KRSRP +W
Sbjct: 271 PSNIGSKRSRP-LW 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538820|ref|XP_002510475.1| Salt-tolerance protein, putative [Ricinus communis] gi|223551176|gb|EEF52662.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 195/322 (60%), Positives = 223/322 (69%), Gaps = 26/322 (8%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC+K EASVFCTADEAALCD CDH VHHANKLASKHHRF LLHPSSK FPICDV
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDACDHSVHHANKLASKHHRFCLLHPSSKSFPICDV 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQE+RAF+FCQQDRAILCRDCD+PIH ANEHTQKHNRFLLTGVKLSATS +Y  S S S 
Sbjct: 61  CQEKRAFVFCQQDRAILCRDCDVPIHKANEHTQKHNRFLLTGVKLSATSVIYMPSSSSSV 120

Query: 121 PNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPS--------NSEIS----TSSAVTNSNG 168
           P+GCD    VPD+    +++  +  P NSNPPS        NS +S    +S+ V N +G
Sbjct: 121 PSGCDL---VPDSKSQQQQS--AKKPSNSNPPSSTFKTLSPNSTLSKTSPSSNTVVNKSG 175

Query: 169 GNSVIAANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLD 227
            NSVI  N  G  S SSISEYL E LPGWHV+D LD  S P GFCK +D  LP    DL 
Sbjct: 176 DNSVI--NNEGIGSVSSISEYLMETLPGWHVDDFLDFPSIPFGFCKPDDEILPVGGGDLG 233

Query: 228 CNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTED 287
              + FSSE +GIWVPQA  P     +    Q    + FK+ KE T  K   +NRR+++D
Sbjct: 234 DVTNPFSSE-MGIWVPQAPIPPHPSQH--YQQMVSQVGFKETKEATNTKP--NNRRWSDD 288

Query: 288 VFTVPQISPQLAGFKRSRPNIW 309
            FTVPQ+SP   G KRSR + W
Sbjct: 289 AFTVPQVSPPSIGSKRSR-SFW 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398745|gb|ADL36667.1| COL domain class transcription factor [Malus x domestica]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/314 (58%), Positives = 210/314 (66%), Gaps = 23/314 (7%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVCNK +ASVFCTADEAALCD CDHRVHHANKLASKHHRFSL+HPSSK FP+CD+
Sbjct: 1   MKIQCDVCNKDDASVFCTADEAALCDACDHRVHHANKLASKHHRFSLIHPSSKEFPVCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTS----SV 116
           CQERRAFLFCQQDRAILCR+CD+ IH ANEHT KHNRFLLTG+KLSATS LY S    +V
Sbjct: 61  CQERRAFLFCQQDRAILCRECDLSIHNANEHTLKHNRFLLTGIKLSATSALYESPPPPTV 120

Query: 117 SKSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAAN 176
           + ++    D     P   +S+      ++  N  P +    ++S+A  N   GN V A  
Sbjct: 121 ATASSETADLKKQQPLTKESVSTASPPISNPNPPPVAAKNSTSSTAAVNKGSGNLVGA-- 178

Query: 177 ECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKG-NDGTLPFLDADLDCNLSSFS 234
                  SSISEYL E LPGWHVED LD SS P GF K  ND  LPF DA    NL+SFS
Sbjct: 179 ------TSSISEYLIETLPGWHVEDFLDFSSAPFGFSKADNDMMLPFSDAYPGSNLNSFS 232

Query: 235 SERVGIWVPQA--ASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVP 292
           SE +G+WVPQA  A P Q   YS      G + FK+ KE T + A    R + +D FTVP
Sbjct: 233 SENMGMWVPQAPQAPPHQ---YSQVG--GGFVGFKETKEGTNMNA--GKRLWMDDGFTVP 285

Query: 293 QISPQLAGFKRSRP 306
           QISP   G KR RP
Sbjct: 286 QISPPSLGSKRFRP 299

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505194|gb|AFK40663.1| unknown [Lotus japonicus]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 178/328 (54%), Positives = 201/328 (61%), Gaps = 39/328 (11%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC+K EASVFCTADEAALCD CDHRVHHANKLASKH RFSL  PSSK  P+CD+
Sbjct: 1   MKIQCDVCSKDEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLHTPSSKQHPLCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYT------- 113
           CQER+AF+FCQQDRAILC++CD+ IH+ NEHTQKH+RFLLTGVKLSAT  LY+       
Sbjct: 61  CQERKAFMFCQQDRAILCKECDMSIHSVNEHTQKHDRFLLTGVKLSATPKLYSSASTAST 120

Query: 114 ----------SSVSKSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAV 163
                     SS +KS P+    S   P     I KTV          PS   +   +  
Sbjct: 121 PSKTKSGLTNSSDAKSKPSFSSCSKSNPSHQGLIAKTV----------PSVESVLPHTTT 170

Query: 164 TNSNGGNSVIAANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTL-PF 221
            N  GG+ V  A   GT S SSISEYL E LPGW VEDLLDS   P GF KG+   L  F
Sbjct: 171 INKVGGSLVTMA---GTGSTSSISEYLIETLPGWQVEDLLDSYVVPFGFSKGDHDILRQF 227

Query: 222 LDADLDCNLSSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSN 281
            DA ++ NL SFS    GIWVPQA  P    LYSSQ       S       T +K  SS 
Sbjct: 228 DDAGIEGNLCSFSPNNNGIWVPQAPPP----LYSSQMDRVFGQSVTKEGGTTNIKG-SSR 282

Query: 282 RRYTEDVFTVPQISPQLAGFKRSRPNIW 309
            R  +DVFTVPQISP     KR+R  +W
Sbjct: 283 SRLRDDVFTVPQISPDSTS-KRTR-YLW 308

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505596|gb|AFK40864.1| unknown [Lotus japonicus]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/318 (54%), Positives = 199/318 (62%), Gaps = 19/318 (5%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC+K EASVFCTADEAALCD CDHRVHHANKLASKH RFSL  PSSK  P+CD+
Sbjct: 1   MKIQCDVCSKDEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLHTPSSKQHPLCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSV---- 116
           CQER+AF+FCQQDRAILC++CD+ IH+ NEHTQKH+RFLLTGVKLSAT  LY+S+     
Sbjct: 61  CQERKAFMFCQQDRAILCKECDMSIHSVNEHTQKHDRFLLTGVKLSATPKLYSSASTAST 120

Query: 117 ---SKSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVI 173
              +KS       +   P  +   K  +     +    PS   +   +   N  GG+ V 
Sbjct: 121 PSKTKSGLTNSSDAKSKPSFSSCSKSNLSHQGLIAKTVPSVESVLPHTTTINKVGGSLVT 180

Query: 174 AANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTL-PFLDADLDCNLS 231
            A   GT S SSISEYL E LPGW VEDLLDS   P GF KG+   L  F DA ++ NL 
Sbjct: 181 MA---GTGSTSSISEYLIETLPGWQVEDLLDSFVVPFGFSKGDHDILQQFDDAGIEGNLC 237

Query: 232 SFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTV 291
           SFS    GIWVPQA  P    LYSSQ       S       T +K  SS  R  +DVFTV
Sbjct: 238 SFSPNNNGIWVPQAPPP----LYSSQMDRVFGQSVTKEGGTTNIKG-SSRSRLRDDVFTV 292

Query: 292 PQISPQLAGFKRSRPNIW 309
           PQISP     KR+R  +W
Sbjct: 293 PQISPDSTS-KRTR-YLW 308

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553411|ref|XP_003545050.1| PREDICTED: probable salt tolerance-like protein At1g75540-like [Glycine max]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 205/306 (66%), Gaps = 34/306 (11%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVCNK EASVFCTADEAALCD CDHRVHHANKLASKH RFSLL PS K  P+CD+
Sbjct: 1   MKIQCDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSHKQHPLCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           CQERRAF FCQQDRAILC++CD+ IH+ANEHT KH+RFLLTGVKL+A++ L +S  +   
Sbjct: 61  CQERRAFTFCQQDRAILCKECDVSIHSANEHTLKHDRFLLTGVKLAASAMLRSSQTTS-- 118

Query: 121 PNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANECGT 180
                      D+N +   ++++V+   +  PS      S+  T +N  N+ +A    G+
Sbjct: 119 -----------DSNST--PSLLNVSHQTTPLPS------STTTTTTNNNNNKVAVEGTGS 159

Query: 181 VSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSERVG 239
            SASSISEYL E LPGW VED LDS   P GFCK ND  LP LDAD++ ++ SFS+E +G
Sbjct: 160 TSASSISEYLIETLPGWQVEDFLDSYFVPFGFCK-NDEVLPRLDADVEGHMGSFSTENMG 218

Query: 240 IWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISPQLA 299
           IWVPQA  P+   + SSQ      +  +    + G    SS  R  +D FTVPQISP  +
Sbjct: 219 IWVPQAPPPL---VCSSQ---MDRVIVQSETNIKG----SSISRLKDDTFTVPQISPP-S 267

Query: 300 GFKRSR 305
             KR+R
Sbjct: 268 NSKRAR 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564331|ref|XP_003550408.1| PREDICTED: probable salt tolerance-like protein At1g75540-like [Glycine max]

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 199/309 (64%), Gaps = 38/309 (12%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVCNK EASVFCTADEAALCD CDHRVHHANKLASKH RFSLL PS K  P+CD+
Sbjct: 1   MKIQCDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDI 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLY---TSSVS 117
           CQERRAF FCQQDRAILC++CD+ IH+ANEHT KH+RFLLTGVKLSA++ L    T+S S
Sbjct: 61  CQERRAFTFCQQDRAILCKECDVSIHSANEHTLKHDRFLLTGVKLSASAMLRSSETTSDS 120

Query: 118 KSNPNGCDSSVPVPDANKSIKKTVVSVAPVNSNPPSNSEISTSSAVTNSNGGNSVIAANE 177
            SNP+  +                       S+  +    S+++  T SN  N+ +A   
Sbjct: 121 NSNPSLLNF----------------------SHQTTLLPPSSTTTTTTSNNNNNKVAVEG 158

Query: 178 CGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGTLPFLDADLDCNLSSFSSE 236
            G+ SASSISEYL E LPGW VED LDS S P GFCK ND  LP  D +++ +LSSFS+E
Sbjct: 159 TGSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFCK-NDEVLPRFDGEMEGHLSSFSTE 217

Query: 237 RVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRRYTEDVFTVPQISP 296
            +GIWVPQA  P   C     S     +       + G    SS  R  +D FTVPQISP
Sbjct: 218 NMGIWVPQAP-PTLMC-----SSQMDRVIVHGETNIKG----SSRSRLKDDNFTVPQISP 267

Query: 297 QLAGFKRSR 305
             +  KR+R
Sbjct: 268 P-SNSKRAR 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469917|ref|XP_004152665.1| PREDICTED: probable salt tolerance-like protein At1g75540-like [Cucumis sativus]

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 172/322 (53%), Positives = 204/322 (63%), Gaps = 29/322 (9%)

Query: 1   MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
           MKIQCDVC K +A VFCTADEAALC+ CDHRVHHANKLASKH RFSLL P +   P+CDV
Sbjct: 1   MKIQCDVCEKGDAVVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAGEAPVCDV 60

Query: 61  CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
           C+ERR FLFCQQDRAILCR+CD PIH+ANE T+KH+RFLLTG+KLSA++ LY  S S   
Sbjct: 61  CKERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGIKLSASAALYAPSPSGEK 120

Query: 121 PNGCDSSVPVPDANK-SIKKT-VVSVAP------VNSNPPSNSEISTSSAVTNSNGGNSV 172
           P G    V     +K S+KK   VS AP      V  N P+N    T +AV N  GG  +
Sbjct: 121 PIGSGGCVVSASKSKGSVKKVAAVSKAPTICTPNVCVNAPTN---ITPAAVVNKGGGGQI 177

Query: 173 IAANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKGNDGT-LPFLDADLDCNL 230
                    SASSISEYL E LPGWH ED LDSS  P  F + +DG   PF++ DL+   
Sbjct: 178 ATGG---GGSASSISEYLMETLPGWHFEDFLDSSVSP-PFVEFDDGIGFPFVEGDLNGCF 233

Query: 231 SSFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKAVSSNRR-YTEDVF 289
           S  SSER+ +WVPQ   P         S    +   KD K++ GV +   NR  +T+D F
Sbjct: 234 S--SSERIELWVPQGPPPAPY-----NSGLMMNNGLKDTKDL-GVNSSKVNRSVWTDDGF 285

Query: 290 TVPQISPQL--AGFKRSRPNIW 309
           TVPQI+  +   GFKRSRP  W
Sbjct: 286 TVPQITSTVPSPGFKRSRP-FW 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.852	0.800	0.470	1e-59
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.649	0.834	0.507	1.2e-47
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.385	0.483	0.578	5.7e-36
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.382	0.5	0.541	9.8e-32
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.369	0.709	0.5	9.1e-29
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.308	0.558	0.49	6.1e-23
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.279	0.295	0.422	4.6e-16
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.392	0.351	0.338	6e-16
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.350	0.420	0.352	1.3e-15
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.344	0.301	0.35	1.7e-15

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 142/302 (47%), Positives = 182/302 (60%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHF--PIC 58
             MKI+CDVC+K EASVFCTADEA+LC  CDH+VHHANKLASKH RFSLL+PSS +   P+C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    59 DVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLY--TSSV 116
             D+CQ+++A LFCQQDRAILC+DCD  IH ANEHT+KH+RFLLTGVKLSATS++Y  TS  
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query:   117 SKSNPNGCDSSVPVPDANKS--IKKTXXXXXXXXXXXXXXXXXXXXXAVTNSNGGNSVIA 174
             S S+ +  D SVP    +    +KK                        +  NGG++ + 
Sbjct:   121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQ----------PFSKINGGDASV- 169

Query:   175 ANECGTVSASSISEYL-EMLPGWHVEDLLDSSSDPLGFCKG--NDGTLPFLDADLDCNLS 231
              N+ G  S S+ISEYL + LPGWHVED LDSS    GF K   +DG LP+++ + D N  
Sbjct:   170 -NQWG--STSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSGDDDGVLPYMEPEDDNNTK 226

Query:   232 --------------SFSSERVGIWVPQAASPVQTCLYSSQSQTAGHISFKDAKEVTGVKA 277
                           S  S+ +GIWVPQ    + +   +       +I F    + T  + 
Sbjct:   227 RNNNNNNNNNNNTVSLPSKNLGIWVPQIPQTLPSSYPNQYFSQDNNIQFGMYNKETSPEV 286

Query:   278 VS 279
             VS
Sbjct:   287 VS 288

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 105/207 (50%), Positives = 123/207 (59%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
             MKI C VC+K EASVFC ADEAALC+ CD  VH ANKLA KH RFSL  P+ K  P+CD+
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    61 CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
             C ERRA LFCQ+DRAILCR+CDIPIH ANEHT+KHNRFLLTGVK+SA+ + Y  +   SN
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRA---SN 117

Query:   121 PNGCDSSVPVPDANKSIKKTXXXXXXXXXXXXXXXXXXXXXAVTNSNGGNSVIAANECGT 180
              N   +        KS+                                + V  +   G+
Sbjct:   118 SNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGS-GS 176

Query:   181 VSASSISEYL-EMLPGWHVEDLLDSSS 206
                 SISEYL E LPGW VEDLL+  S
Sbjct:   177 GCTGSISEYLMETLPGWRVEDLLEHPS 203

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 70/121 (57%), Positives = 87/121 (71%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
             MKIQCDVC K+ A+V C ADEAALC  CD  +H ANKLASKH R  L   S+K FP CD+
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDI 59

Query:    61 CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
             CQE+ AF+FC +DRA+LCRDCD  IH AN  +  H RFL TG+K++ TST+ +  + K+ 
Sbjct:    60 CQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQ 119

Query:   121 P 121
             P
Sbjct:   120 P 120

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 65/120 (54%), Positives = 82/120 (68%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
             MKIQCDVC K+ A++ C ADEAALC  CD  VH ANKLASKH R  L   S+K FP CD+
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTK-FPPCDI 59

Query:    61 CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSN 120
             C E+ AF+FC +DRA+LCRDCD   H  N  +  H RFL TG++++ +ST     V K++
Sbjct:    60 CLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNH 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 62/124 (50%), Positives = 79/124 (63%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHF----- 55
             MKIQC+VC K+EA V C +DEA LC  CD +VH ANKL  +HHR +L   ++        
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSS 115
             P+CD+CQER+ + FC +DRA+LC DCD  IHT N H     RFLL+GV++S  S    S 
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNSH----QRFLLSGVQVSDQSLTENSE 116

Query:   116 VSKS 119
              S S
Sbjct:   117 CSTS 120

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 49/100 (49%), Positives = 63/100 (63%)

Query:     1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDV 60
             M+I CD C  + A VFC ADEAALC +CD +VH  NKLAS+H R  L  PS+   P CD+
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA--PSCDI 58

Query:    61 CQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL 100
             C+   AF +C+ D + LC  CD+ +H   + T  H RFLL
Sbjct:    59 CENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLL 96

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 41/97 (42%), Positives = 57/97 (58%)

Query:     5 CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
             CD C  + A++FC AD A LC  CD ++H ANKLAS+H R  L          C+VC++ 
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL----------CEVCEQA 57

Query:    65 RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLT 101
              A + C+ D A LC  CD  IH+AN  +++H R  +T
Sbjct:    58 PAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 46/136 (33%), Positives = 67/136 (49%)

Query:     5 CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
             CD C  +  +V+C AD A LC TCD RVH AN++AS+H R            +C  C+  
Sbjct:    16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVR----------VCQSCESA 65

Query:    65 RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKLSATSTLYTSSVSKSNPNGC 124
              A   C+ D A LC  CD  IH+AN   ++H R  +  +  ++ S++  S     N    
Sbjct:    66 PAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETDADNDED- 124

Query:   125 DSSVP---VPDANKSI 137
             D  V    +P+  K+I
Sbjct:   125 DREVASWLLPNPGKNI 140

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/122 (35%), Positives = 65/122 (53%)

Query:     5 CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
             CD C  + + V+C AD A LC +CD RVH AN++AS+H R            +C+ C+  
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVR----------VCEACERA 84

Query:    65 RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFL---LTGVKLSATSTLYTSSVSKSNP 121
              A L C+ D A LC  CD+ +++AN   ++H R     L  + + ATS L  + V+ +  
Sbjct:    85 PAALACRADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATV 144

Query:   122 NG 123
              G
Sbjct:   145 LG 146

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 42/120 (35%), Positives = 64/120 (53%)

Query:     5 CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64
             CD C  +  +V+C AD A LC +CD +VH AN+LAS+H R            +C  C+  
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVR----------VCQSCERA 61

Query:    65 RAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVK---LSATSTLYTSSVSKSNP 121
              A  FC+ D A LC  CD  IH+AN   ++H R  +  +     S+T+T ++   + ++P
Sbjct:    62 PAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDP 121

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQZ7	STHX_ARATH	No assigned EC number	0.4664	0.9196	0.8640	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-09
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-08
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	1e-05
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	6e-04

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 56  PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL 100
            +CD   E    LFC+ DRA+LC DCD+ +H        H R  L
Sbjct: 1   RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 56  PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL 100
           P CD   +  A  FC++  A+LCR CD   H      + H   LL
Sbjct: 4   PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 3  IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL 47
            CD   +   S+FC  D A LC  CD  VH      S H R  L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 6/43 (13%)

Query: 5  CDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL 47
          CD      A  FC    A LC TCD   H        H    L
Sbjct: 6  CDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 56 PICDVCQERRAFLFCQQDRAILCRDCDIPIH 86
           +C   +E+   L+C+  + +LC +C +  H
Sbjct: 4  RLCPEHEEKPLELYCEDCQQLLCEECALSGH 34

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.62
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.46
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.38
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.23
smart00336	42	BBOX B-Box-type zinc finger.	96.9
smart00336	42	BBOX B-Box-type zinc finger.	96.81
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.78

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.62  E-value=3.8e-05  Score=51.18  Aligned_cols=38  Identities=47%  Similarity=0.987  Sum_probs=33.8

Q ss_pred             ccccccccceEEeecCCccccccccCcCccCCCcccCCccceee
Q 021533           57 ICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL  100 (311)
Q Consensus        57 LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl  100 (311)
                      +|+.|+.+++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6999999899999999999999999988763      7888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.46  E-value=9e-05  Score=49.33  Aligned_cols=39  Identities=41%  Similarity=0.761  Sum_probs=34.0

Q ss_pred             CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecc
Q 021533            3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL   47 (311)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl   47 (311)
                      ..|+.++.+++.+||..|++.+|..|+...|.      .|.|++|
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999998899999999999999999988775      7888764

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.38  E-value=4.7e-05  Score=77.21  Aligned_cols=87  Identities=22%  Similarity=0.492  Sum_probs=74.5

Q ss_pred             CCCcccCCCC--cEEEeccCccccchhhccccccCccccCCceeecccC------CCCCCCCccccccccceEEeecCCc
Q 021533            3 IQCDVCNKSE--ASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLH------PSSKHFPICDVCQERRAFLFCQQDR   74 (311)
Q Consensus         3 ~~Cd~C~~a~--A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~------ps~k~~~LCD~CqsapA~vfC~aDs   74 (311)
                      -.|.+|++++  |.|+|..+..++|.-|..+.|-+-..+.||.-+|-.+      -+++....|..|+...-.+||.+|.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            3699999876  9999999999999999999999888888998776432      2345566799999999999999999


Q ss_pred             cccccccCcCccCCC
Q 021533           75 AILCRDCDIPIHTAN   89 (311)
Q Consensus        75 A~LC~~CD~~iHsAN   89 (311)
                      +++|..|...+.|+|
T Consensus       243 ~pvc~~clee~khs~  257 (699)
T KOG4367|consen  243 MPVCYQCLEEGKHSS  257 (699)
T ss_pred             ChHHHHHHHhhcccc
Confidence            999999998877666

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.23  E-value=0.00018  Score=49.19  Aligned_cols=40  Identities=28%  Similarity=0.566  Sum_probs=34.2

Q ss_pred             CCccccccccceEEeecCCccccccccCcCccCCCcccCCccceee
Q 021533           55 FPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL  100 (311)
Q Consensus        55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl  100 (311)
                      ...|+.|....+.+||..|...||..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3689999999999999999999999999988754      887775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.90  E-value=0.00084  Score=45.21  Aligned_cols=39  Identities=41%  Similarity=0.806  Sum_probs=33.6

Q ss_pred             CccccccccceEEeecCCccccccccCcCccCCCcccCCccceee
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL  100 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl  100 (311)
                      ..|+.|+..++.+||..|.+.||..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999899999999999999999998754      57777664

>smart00336 BBOX B-Box-type zinc finger

Probab=96.81  E-value=0.0011  Score=44.69  Aligned_cols=39  Identities=36%  Similarity=0.632  Sum_probs=33.3

Q ss_pred             CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecc
Q 021533            3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL   47 (311)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl   47 (311)
                      ..|..++..++.+||..|++.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999889999999999999999998866      56777653

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.78  E-value=0.0013  Score=44.88  Aligned_cols=39  Identities=23%  Similarity=0.530  Sum_probs=33.8

Q ss_pred             CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecc
Q 021533            3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL   47 (311)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl   47 (311)
                      ..|+.|.+.++.+||..++..+|..|....|..      |..++|
T Consensus         4 ~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    4 PKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             ccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            579999998899999999999999999999874      877754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	4e-09

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 2  KIQCDVC---NKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPIC 58
          K+ C  C      +A   C   E + CD C    H   K  + H     +  S     +C
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 62

Query: 59 DVCQERRAFLFCQQDRAILCRDCDI 83
             ++ +  ++C  D  ++C  C +
Sbjct: 63 LEHEDEKVNMYCVTDDQLICALCKL 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.95
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	95.75
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.31
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.28
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	93.68
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	93.43
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	93.27
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	93.05
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	92.6
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.5
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.08
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	91.78
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	89.42

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.95  E-value=6.5e-10  Score=87.14  Aligned_cols=93  Identities=23%  Similarity=0.517  Sum_probs=75.1

Q ss_pred             CCCCcccCC---CCcEEEeccCccccchhhccccccCccccCCceee-cccCCCCCCCCccccccccceEEeecCCcccc
Q 021533            2 KIQCDVCNK---SEASVFCTADEAALCDTCDHRVHHANKLASKHHRF-SLLHPSSKHFPICDVCQERRAFLFCQQDRAIL   77 (311)
Q Consensus         2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rv-pl~~ps~k~~~LCD~CqsapA~vfC~aDsA~L   77 (311)
                      ...|++|..   .+|+.+|..+.+.||..|...+|..++.+.+|..+ |+.. .+.....|+.|+..+..+||..|...+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-~~~~~~~C~~H~~e~l~~fC~~~~~~i   81 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-SHIRGLMCLEHEDEKVNMYCVTDDQLI   81 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-CCSSCCCCSSCSSSCCCEEETTTTEEE
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-cCccCCcCcCcCCCcceEECCCCCCcc
Confidence            367999984   68999999999999999999999988888999987 3332 123346899999889999999999999


Q ss_pred             ccccCc-CccCCCcccCCccceeec
Q 021533           78 CRDCDI-PIHTANEHTQKHNRFLLT  101 (311)
Q Consensus        78 C~~CD~-~iHsAN~la~rH~Rvpl~  101 (311)
                      |..|.. ..|.      .|..++|.
T Consensus        82 C~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           82 CALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             CHHHHHHTTTS------SSCBCCCC
T ss_pred             chhcCCCCCcC------CCCeecCC
Confidence            999987 4453      46555553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=95.75  E-value=0.0061  Score=46.04  Aligned_cols=61  Identities=15%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             cCCceeecccCCCCCCCCccccccccceEEeecCCccccccccCcC-ccCCCcccCCccceeecCccc
Q 021533           39 ASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIP-IHTANEHTQKHNRFLLTGVKL  105 (311)
Q Consensus        39 a~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~-iHsAN~la~rH~Rvpl~~~~~  105 (311)
                      +.+|..+............|+.|...+..+||..|...+|..|... .|      +.|..++|..+..
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~   63 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE   63 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHH
Confidence            4567776543211334468999988889999999999999999873 34      4677888777643

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.31  E-value=0.025  Score=39.42  Aligned_cols=42  Identities=29%  Similarity=0.578  Sum_probs=34.7

Q ss_pred             CCccccccccceEEeecCCccccccccCc-CccCCCcccCCccceeecCc
Q 021533           55 FPICDVCQERRAFLFCQQDRAILCRDCDI-PIHTANEHTQKHNRFLLTGV  103 (311)
Q Consensus        55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~-~iHsAN~la~rH~Rvpl~~~  103 (311)
                      ...|+.|+ .+..+||..|...+|..|.. ..|      +.|..++|..+
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea   50 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP   50 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence            35799998 78999999999999999987 334      57888888765

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.28  E-value=0.013  Score=45.32  Aligned_cols=43  Identities=19%  Similarity=0.466  Sum_probs=37.9

Q ss_pred             Cccccccc---cceEEeecCCccccccccCcCccCCCcccCCccce
Q 021533           56 PICDVCQE---RRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRF   98 (311)
Q Consensus        56 ~LCD~Cqs---apA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rv   98 (311)
                      ..|++|..   .+|..+|..|.+.+|..|....|..+....+|.++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   68999999999999999999888877777888876

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=93.68  E-value=0.029  Score=40.20  Aligned_cols=45  Identities=20%  Similarity=0.447  Sum_probs=36.4

Q ss_pred             CCccccccccceEEeecCCccccccccCcC-ccCCCcccCCccceeecCccc
Q 021533           55 FPICDVCQERRAFLFCQQDRAILCRDCDIP-IHTANEHTQKHNRFLLTGVKL  105 (311)
Q Consensus        55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~~-iHsAN~la~rH~Rvpl~~~~~  105 (311)
                      ...|+.|...+..+||..|...+|..|... .|      +.|..+||..+..
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a~~   53 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVFQ   53 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCCS
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHHHH
Confidence            357999988889999999999999999864 44      3588888777643

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=93.43  E-value=0.034  Score=38.16  Aligned_cols=42  Identities=29%  Similarity=0.694  Sum_probs=34.5

Q ss_pred             CccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV  103 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~  103 (311)
                      ..|..|...+..+||..|...+|..|....|      +.|..++|..+
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea   48 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA   48 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence            5799998888999999999999999987544      46777777664

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=93.27  E-value=0.041  Score=36.39  Aligned_cols=28  Identities=25%  Similarity=0.586  Sum_probs=24.9

Q ss_pred             CccccccccceEEeecCCccccccccCcC
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIP   84 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~   84 (311)
                      .+|+.|+ .+..+||..|...+|..|...
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            4799997 678999999999999999873

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=93.05  E-value=0.042  Score=37.53  Aligned_cols=41  Identities=20%  Similarity=0.517  Sum_probs=32.0

Q ss_pred             CCccccccccceEEeecCCccccccccCc-CccCCCcccCCccceeec
Q 021533           55 FPICDVCQERRAFLFCQQDRAILCRDCDI-PIHTANEHTQKHNRFLLT  101 (311)
Q Consensus        55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~-~iHsAN~la~rH~Rvpl~  101 (311)
                      ..+|..|...+..+||..|...+|..|.. ..|      +.|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            46799999788999999999999999974 344      346666653

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=92.60  E-value=0.064  Score=40.80  Aligned_cols=44  Identities=27%  Similarity=0.606  Sum_probs=37.0

Q ss_pred             CCCCcccCC---CCcEEEeccCccccchhhccccccCccccCCceee
Q 021533            2 KIQCDVCNK---SEASVFCTADEAALCDTCDHRVHHANKLASKHHRF   45 (311)
Q Consensus         2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rv   45 (311)
                      .+.||+|..   .+|+..|..+.+.||..|=+..|...+.+.+|.=+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999975   67999999999999999988888876777788643

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.50  E-value=0.081  Score=37.96  Aligned_cols=43  Identities=26%  Similarity=0.601  Sum_probs=34.1

Q ss_pred             CCccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533           55 FPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV  103 (311)
Q Consensus        55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~  103 (311)
                      ..+|..|+ .+..+||..|...+|..|.....     .+.|..++|..+
T Consensus        14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~e-----H~~H~~~~l~ea   56 (59)
T 2yrg_A           14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQE-----HRGHHTFPTSGP   56 (59)
T ss_dssp             SSBCTTTC-CBCCEEETTTCSEECHHHHTSTT-----TTTCCEEECCSS
T ss_pred             CccChhhC-ceeeeecCCCCcEEecccCCCCc-----CCCCcEeeHHHH
Confidence            35799998 57899999999999999987332     256788887765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.08  E-value=0.058  Score=39.76  Aligned_cols=57  Identities=23%  Similarity=0.405  Sum_probs=40.8

Q ss_pred             cCCceeecccCCCCCCCCccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCcc
Q 021533           39 ASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVK  104 (311)
Q Consensus        39 a~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~~  104 (311)
                      +.+|+-+.-.  .......|+.|+ .+..+||..|...+|..|....|      +.|..++|..+.
T Consensus         4 ~~~H~L~~p~--~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~   60 (72)
T 2csv_A            4 GSSGQLLEPI--RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK   60 (72)
T ss_dssp             SCCCCCCCCS--SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred             ccCCcccCCc--cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence            4456655321  223446899995 78999999999999999987434      467888877653

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.78  E-value=0.037  Score=39.56  Aligned_cols=32  Identities=28%  Similarity=0.526  Sum_probs=27.0

Q ss_pred             CCCCCccccccccceEEeecCCccccccccCcC
Q 021533           52 SKHFPICDVCQERRAFLFCQQDRAILCRDCDIP   84 (311)
Q Consensus        52 ~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~   84 (311)
                      .....+|..|+ .+..+||..|...+|..|...
T Consensus        15 ~~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~   46 (57)
T 2egm_A           15 VTDQGICPKHQ-EALKLFCEVDEEAICVVCRES   46 (57)
T ss_dssp             CCTTSBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred             ccccCcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence            34456899995 689999999999999999863

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=89.42  E-value=0.11  Score=39.50  Aligned_cols=44  Identities=18%  Similarity=0.431  Sum_probs=36.9

Q ss_pred             CCccccccc---cceEEeecCCccccccccCcCccCCCcccCCccce
Q 021533           55 FPICDVCQE---RRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRF   98 (311)
Q Consensus        55 ~~LCD~Cqs---apA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rv   98 (311)
                      ...|++|..   .+|...|..|.+.+|..|-...|......++|..+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            468999986   67999999999999999988768777777788754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	95.32
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	94.6
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	93.75
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	93.64
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	92.95
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	92.54
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	82.66

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0024  Score=43.55  Aligned_cols=43  Identities=16%  Similarity=0.375  Sum_probs=35.2

Q ss_pred             CccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV  103 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~  103 (311)
                      ++|+.|...+..+||..|...+|..|...+.+     +.|.-.+|..+
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H-----k~H~v~~l~~a   44 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH-----KACEVAPLQSV   44 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST-----TSSCEECTTTC
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc-----CcCcCcCHHHH
Confidence            58999999999999999999999999764332     34877777665

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0075  Score=42.90  Aligned_cols=45  Identities=16%  Similarity=0.336  Sum_probs=36.7

Q ss_pred             CccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCccc
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVKL  105 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~~~  105 (311)
                      ..|..|...+..+||..|...+|..|...++|     ..|...+|..+..
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~~a~~   56 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLNDRFE   56 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCCSSCC
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHHHHHH
Confidence            46999999999999999999999999765432     4588888877643

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.017  Score=38.67  Aligned_cols=40  Identities=20%  Similarity=0.575  Sum_probs=32.4

Q ss_pred             CccccccccceEEeecCCccccccccCcC-ccCCCcccCCccceeec
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIP-IHTANEHTQKHNRFLLT  101 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~-iHsAN~la~rH~Rvpl~  101 (311)
                      .+|..|...+..+||..|..++|..|... .|      +.|.-.+|.
T Consensus         6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l~   46 (47)
T d2dq5a1           6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAALS   46 (47)
T ss_dssp             CBCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCSC
T ss_pred             ccchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeCC
Confidence            58999999999999999999999999765 34      346655553

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.014  Score=37.95  Aligned_cols=39  Identities=26%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CccccccccceEEeecCCccccccccCcCccCCCcccCCccceee
Q 021533           56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL  100 (311)
Q Consensus        56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl  100 (311)
                      .+|..|+ .+-.+||..|...+|..|....-     .+.|.-+||
T Consensus         2 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-EALSLFCYEDQEAVCLICAISHT-----HRAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSST-----TTTSCEEEC
T ss_pred             CcchhhC-ccceEEcccCCcEeeccCcCCCC-----cCCCcEecC
Confidence            4799995 67999999999999999976532     245776664

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.95  E-value=0.023  Score=36.79  Aligned_cols=38  Identities=24%  Similarity=0.543  Sum_probs=29.1

Q ss_pred             ccccccccceEEeecCCccccccccCcCccCCCcccCCccceee
Q 021533           57 ICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLL  100 (311)
Q Consensus        57 LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl  100 (311)
                      .|..|+ .+..+||..|...+|..|....-     .+.|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLK-----HASHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSS-----CTTCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCC-----cCCCcEeeC
Confidence            488886 68999999999999999976432     245666554

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.019  Score=39.88  Aligned_cols=44  Identities=25%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             CCCCccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533           53 KHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV  103 (311)
Q Consensus        53 k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~  103 (311)
                      .....|..|+ .+..+||..|...+|..|....|      ..|..++|..+
T Consensus         9 ~~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~~a   52 (59)
T d2csva1           9 FEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA   52 (59)
T ss_dssp             SSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred             hhhCchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHHHH
Confidence            3446899995 68999999999999999976544      45888877654

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=0.68  Score=32.85  Aligned_cols=45  Identities=22%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             ccccccccc---eEEeecCC----ccccccccCcCccCCCcccCCccceeec
Q 021533           57 ICDVCQERR---AFLFCQQD----RAILCRDCDIPIHTANEHTQKHNRFLLT  101 (311)
Q Consensus        57 LCD~Cqsap---A~vfC~aD----sA~LC~~CD~~iHsAN~la~rH~Rvpl~  101 (311)
                      .|+.|+..+   ..+.|..|    .--||..|-...+....+...|.-.+|-
T Consensus        16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY   67 (69)
T ss_dssp             CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred             EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEee
Confidence            699999876   45788888    5689999988777666677788777764