Citrus Sinensis ID: 021538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Secondary Structure (PSIPRED)
cccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEEEcccEEEEccccccccccccccEEEEcccccccccccccccEEEEEccccccccccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcHccccEEEEEEEEEEccccEEEEEcccccccccccccEEEEEccccccccccccccEEEEEcccccHHcccHcHccccccccEEEEEEEEEcccccccEEcccccHHHHHHccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHccccc
Coil and Loop (DISEMBL)
MKVKEKMAVASISKTLtklgggssfllnhrapprlyssSAAAalssapqlssssqdqenvrkgsapsstwSKWLLFlpgaisfglgtwQIFRRQDKIKMLEYRQNrlqmdplrlnitspltedLKSLEFRRVICQgvfdeqrsiyvgprsrsisgvtengyyvitplmpipnnpqsvkspvlvnrgwvprswrdkssevsrdseqplnlapsvqqsqQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKtlsilrtpmKMSILATLTLFQKMSVLcfgvqsclkti
Flexible Loop (DISEMBL)
MKVKEKMAVASISktltklgggsSFLLNHRAPPRLYSSSAAAALSSApqlssssqdqeNVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQnrlqmdplrlniTSPLTEDLKSLEFRRVICQgvfdeqrsiyvgprsrsisgvtENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKssevsrdseqplnlapsvqqSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Low Complexity Region (SEG)
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYsssaaaalssapqlssssqDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPsvqqsqqsswwwfwLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Disordered region (IsUnstruct)
********************************************************************TWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIP********PVLVNRGWVP******************************SWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCL***
Disordered Region (DISOPRED)
*********************************************************************WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVP*****************LNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Disordered Region (DISEMBL)
*********ASISKTLTKLGGGSSFLLNHRAPPRLYSSS****************************STWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRS***************************SSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Disordered Region (DISPRO)
MKVKEKMAVASISKTLTKLGGGSS***N**************************************SSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKT*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVKEKMAVASISKTLTKLGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMIQAPVNGSMWMFLQLLVLVGSLKTLSILRTPMKMSILATLTLFQKMSVLCFGVQSCLKTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q9SE51	354	Surfeit locus protein 1 O	yes	no	0.556	0.488	0.596	5e-56
Q9LP74	384	Surfeit locus protein 1-l	no	no	0.604	0.489	0.408	5e-34
Q800L1	309	Surfeit locus protein 1 O	yes	no	0.472	0.475	0.325	5e-13
Q9QXU2	306	Surfeit locus protein 1 O	yes	no	0.350	0.356	0.375	5e-13
Q15526	300	Surfeit locus protein 1 O	yes	no	0.427	0.443	0.324	6e-13
P09925	306	Surfeit locus protein 1 O	yes	no	0.549	0.558	0.291	6e-13
Q556J9	270	SURF1-like protein OS=Dic	yes	no	0.334	0.385	0.366	2e-12
A4IHH4	307	Surfeit locus protein 1 O	yes	no	0.565	0.573	0.29	5e-12
A9UWF0	261	SURF1-like protein OS=Mon	N/A	no	0.463	0.551	0.288	7e-12
O57593	240	Surfeit locus protein 1 (	N/A	no	0.356	0.462	0.353	7e-12

>sp|Q9SE51|SURF1_ARATH Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 137/181 (75%), Gaps = 8/181 (4%)

Query: 55  QDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL 114
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++L
Sbjct: 63  PPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKL 117

Query: 115 NITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNP 174
           NI  PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP + 
Sbjct: 118 NIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDL 177

Query: 175 QSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNIV 232
            S++SP+LVNRGWVPRSWR+KS E S ++E   N +   +   ++  SWW FW K P I 
Sbjct: 178 DSMQSPILVNRGWVPRSWREKSQE-SAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVIT 236

Query: 233 E 233
           +
Sbjct: 237 K 237

Probably involved in the biogenesis of the COX complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP74|SURFL_ARATH Surfeit locus protein 1-like OS=Arabidopsis thaliana GN=At1g48510 PE=2 SV=2

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 20/208 (9%)

Query: 37  SSSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDK 96
           SSS  + L +A Q S+      +     A     S  L +L G  ++GLG    F  Q +
Sbjct: 20  SSSTTSNLPAASQTSNLESQLLSSAPPPAKKKRGSALLWYLVGFTTYGLGETYKFL-QTQ 78

Query: 97  IKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGV 156
           ++ L+ R+  L+M P++LN T    +DL  L FRRV+C+G+FDEQRSIYVGP+ RS+S  
Sbjct: 79  VEHLDSRKQCLEMKPMKLNTT----KDLDGLGFRRVVCKGIFDEQRSIYVGPKPRSMSKS 134

Query: 157 TENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQS 216
           +E G+YVITPL+PIPN P S+KSP+LVNRGWVP  W++ S E    S     L  + ++S
Sbjct: 135 SEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPSDWKENSLE----SLGTGGLVAAAKES 190

Query: 217 QQSS-----------WWWFWLKKPNIVE 233
           ++++            +W+ L  P IVE
Sbjct: 191 RKANKLLSSQQSLLSKFWYKLNNPMIVE 218

May be involved in the biogenesis of the COX complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q800L1|SURF1_CHICK Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%)

Query: 64  SAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
           +A    W KW L L    +F LGTWQI RR+ K+ ++    +RL  +P+ L +  P+  +
Sbjct: 65  AAGEDAWLKWGLLLVPLTAFCLGTWQIQRRKWKLDLIAQLASRLSSEPIPLTL-DPM--E 121

Query: 124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGVT---ENGYYVITPLMPIPN 172
           LK LE+R V  +G FD  + +Y+ PRS        R    +T   ENG  VITP      
Sbjct: 122 LKELEYRPVKVRGHFDHSKELYILPRSLVDPEREAREAGKLTSHAENGANVITPFYCT-- 179

Query: 173 NPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQ 218
               +   +LVNRG+VP+      + +    E+ ++L   V+ S++
Sbjct: 180 ---ELGVTILVNRGFVPKKKLKPETRLKGQIEEEIDLTGVVRLSEK 222

Probably involved in the biogenesis of the COX complex.

Gallus gallus (taxid: 9031)

>sp|Q9QXU2|SURF1_RAT Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 19/128 (14%)

Query: 73  WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRV 132
           +LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +LK+LE+R V
Sbjct: 72  FLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--ELKNLEYRPV 127

Query: 133 ICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNNPQSVKSPVL 182
             +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +   +   +L
Sbjct: 128 KVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----HCSDLGVTIL 182

Query: 183 VNRGWVPR 190
           VNRG+VPR
Sbjct: 183 VNRGFVPR 190

Probably involved in the biogenesis of the COX complex.

Rattus norvegicus (taxid: 10116)

>sp|Q15526|SURF1_HUMAN Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 21/154 (13%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P    SS  + +  K  A   ++ +W+L L    +FGLGTWQ+ RR+ K+ ++   ++R+
Sbjct: 41  PSRCGSSAAEASATK--AEDDSFLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRV 98

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS-----------ISGV 156
             +P+ L    P+  +LK+LE+R V  +G FD  + +Y+ PR+             IS  
Sbjct: 99  LAEPVPLP-ADPM--ELKNLEYRPVKVRGCFDHSKELYMMPRTMVDPVREAREGGLISSS 155

Query: 157 TENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPR 190
           T++G YV+TP      +   +   +LVNRG+VPR
Sbjct: 156 TQSGAYVVTPF-----HCTDLGVTILVNRGFVPR 184

Probably involved in the biogenesis of the COX complex.

Homo sapiens (taxid: 9606)

>sp|P09925|SURF1_MOUSE Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 28/199 (14%)

Query: 7   MAVASISKTLTK-----LGGGSSFLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVR 61
           MA+A + + +T+       G + F    R+   ++  S  + +   P+   SS  +    
Sbjct: 5   MALAVLPRRMTRWSQWAYAGRAQFCAVRRS---VFGFSVRSGMVCRPRRCCSSTAETAAA 61

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
           K      ++ +W L L  A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+ 
Sbjct: 62  KAE--DDSFLQWFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM- 117

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIP 171
            +LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G +V+TP     
Sbjct: 118 -ELKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAHVVTPF---- 172

Query: 172 NNPQSVKSPVLVNRGWVPR 190
            +   +   +LVNRG+VPR
Sbjct: 173 -HCSDLGVTILVNRGFVPR 190

Probably involved in the biogenesis of the COX complex.

Mus musculus (taxid: 10090)

>sp|Q556J9|SURF1_DICDI SURF1-like protein OS=Dictyostelium discoideum GN=surf1-1 PE=3 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 16/120 (13%)

Query: 74  LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL------NITSPLTEDLKSL 127
           L F+   I+FGLGTWQ++R   K ++++  ++R++ DP+ L      N       DL   
Sbjct: 10  LFFIFPVIAFGLGTWQVYRYDWKKRLIQRAKDRMEEDPIELSNSFIKNFKGSSFGDLNKY 69

Query: 128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
           EFRRV   G   + + + +GP  RSI G    GYYVI+PL        S  + +L+NRGW
Sbjct: 70  EFRRVYLNGKVIDNQYVLLGP--RSIDGTL--GYYVISPLQ------LSDGTRILLNRGW 119

Probably involved in the biogenesis of the COX complex.

Dictyostelium discoideum (taxid: 44689)

>sp|A4IHH4|SURF1_XENTR Surfeit locus protein 1 OS=Xenopus tropicalis GN=surf1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 24/200 (12%)

Query: 7   MAVASISKTLTKLGGGSSFL-----LNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVR 61
           MA+  ++K L   G  +  L     L+H A P   + S  A L    +  ++        
Sbjct: 1   MALPGVTKLLLLPGVRAQLLNTPVRLSHWATPGRCTKSCHAYLQKNLRFCTTRSFSSVSP 60

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
              +   T  KWLL L    +F LGTWQ+ RR  K+K+++  + R+   P+ L  T P+ 
Sbjct: 61  AAESSEDTVLKWLLLLIPVATFSLGTWQVQRRSWKLKLIQEMEARVSGKPIPLT-TDPM- 118

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRS-----------RSISGVTENGYYVITPLMPI 170
            ++K LE+R V  +G FD  + +Y+ PR+             ++  T++G  VITP    
Sbjct: 119 -EIKELEYRPVKVRGHFDHSKELYILPRTLVDPEREAREAGQLASNTQSGAQVITPFY-- 175

Query: 171 PNNPQSVKSPVLVNRGWVPR 190
                 +   +LVNRG+VP+
Sbjct: 176 ---CSDLGITILVNRGFVPK 192

Probably involved in the biogenesis of the COX complex.

Xenopus tropicalis (taxid: 8364)

>sp|A9UWF0|SURF1_MONBE SURF1-like protein OS=Monosiga brevicollis GN=18583 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 26/170 (15%)

Query: 73  WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRV 132
           W L     ++FGLGTWQIFR+Q K +++   + +L  +P  L  T+P   DL  +E+ RV
Sbjct: 19  WALLSVPVVTFGLGTWQIFRKQQKEELIATLEAKLSKEPAALP-TNP--ADLAHMEYERV 75

Query: 133 ICQGVFDEQRSIYVGPRS------RSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRG 186
              G F   + + VGPR+        ++ + E G  VITP              +LVNRG
Sbjct: 76  AVTGTFLHDQEMLVGPRTVTREVFSGMADLPEAGVQVITPF-----RLADTGEVILVNRG 130

Query: 187 WVPRSWRDKSSEVSRDSEQPLNLAPSVQQS------------QQSSWWWF 224
           +VP +        +   E  + L   V+              +Q++W+W 
Sbjct: 131 FVPEAQAPPHKRAAGQVEGTVRLEGIVRHGESQTAFVPDNHPEQNTWYWI 180

Probably involved in the biogenesis of the COX complex.

Monosiga brevicollis (taxid: 81824)

>sp|O57593|SURF1_TAKRU Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes GN=surf1 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 19/130 (14%)

Query: 72  KWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRR 131
           KW L L  A +FGLGTWQ+ RRQ K+++++        +P+ L I      +L SLE+RR
Sbjct: 4   KWFLLLIPATTFGLGTWQVKRRQWKMELIDGLTKLTTAEPIPLPIDP---AELSSLEYRR 60

Query: 132 VICQGVFDEQRSIYVGPRS-----------RSISGVTENGYYVITPLMPIPNNPQSVKSP 180
           V  +G +D  + +Y+ PRS             +S   E G  VITP      +   +   
Sbjct: 61  VKMRGKYDHSKELYILPRSPVDPEKEAREAGRLSSSGETGANVITPF-----HVTDLGIT 115

Query: 181 VLVNRGWVPR 190
           +LVNRG+VP+
Sbjct: 116 ILVNRGYVPK 125

Probably involved in the biogenesis of the COX complex.

Takifugu rubripes (taxid: 31033)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
255579907	347	surfeit locus protein, putative [Ricinus	0.713	0.639	0.586	3e-66
225456189	349	PREDICTED: surfeit locus protein 1 isofo	0.684	0.610	0.560	3e-61
357499121	333	Surfeit locus protein [Medicago truncatu	0.581	0.543	0.626	2e-59
356531142	333	PREDICTED: surfeit locus protein 1-like	0.790	0.738	0.475	1e-58
449439471	345	PREDICTED: surfeit locus protein 1-like	0.581	0.524	0.627	4e-58
449526790	289	PREDICTED: surfeit locus protein 1-like,	0.524	0.564	0.666	5e-57
255637054	277	unknown [Glycine max]	0.565	0.635	0.596	2e-56
356520667	337	PREDICTED: surfeit locus protein 1-like	0.565	0.522	0.596	3e-56
18401683	354	Surfeit locus 1 cytochrome c oxidase bio	0.556	0.488	0.596	3e-54
297830428	354	hypothetical protein ARALYDRAFT_479277 [	0.559	0.491	0.587	1e-53

>gi|255579907|ref|XP_002530789.1| surfeit locus protein, putative [Ricinus communis] gi|223529644|gb|EEF31590.1| surfeit locus protein, putative [Ricinus communis]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 136/232 (58%), Positives = 173/232 (74%), Gaps = 10/232 (4%)

Query: 8   AVASISKTLTKLGGG---SSFLLNHRAPP---RLYSSSAAAALSSAPQLSSSSQDQENVR 61
           A+ SISKTLT++G G   S   L  +  P    L+ + +AAA+S  P   +      +VR
Sbjct: 3   ALTSISKTLTRVGAGGGGSVATLQMQLGPYSNALFCTLSAAAISQTPSTFTPQSQGVHVR 62

Query: 62  KGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLT 121
           +     S WSKWLLFLPG I+FGLGTWQIFRRQ+KIKML+YRQ RL ++P++ +  SP +
Sbjct: 63  EKER-ISKWSKWLLFLPGTITFGLGTWQIFRRQEKIKMLDYRQKRLAVEPMKFDDISPSS 121

Query: 122 EDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPV 181
           E L +LEFRRV C+GV DE+RSI+VGPRSRSISGVTENGYYVITPLMPIPNNP+SV+SP+
Sbjct: 122 EQLDTLEFRRVACKGVLDEKRSIFVGPRSRSISGVTENGYYVITPLMPIPNNPESVRSPI 181

Query: 182 LVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVE 233
           LVNRGWVPR W+++S E+S+D EQP +LA   Q+ ++ SWW FW KK  +VE
Sbjct: 182 LVNRGWVPRIWKERSLEISQDDEQP-SLA--AQKGERISWWKFWSKKQKVVE 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456189|ref|XP_002282742.1| PREDICTED: surfeit locus protein 1 isoform 1 [Vitis vinifera] gi|359491038|ref|XP_003634208.1| PREDICTED: surfeit locus protein 1 isoform 2 [Vitis vinifera] gi|297734345|emb|CBI15592.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 168/246 (68%), Gaps = 33/246 (13%)

Query: 7   MAVASISKTLTKLGGGSSFLLNHRAP----PRLYSSSAAAALS--------------SAP 48
           MA ASISKTL+K   G+  L NH  P    P LYSSSA  + S              + P
Sbjct: 1   MAAASISKTLSK---GARSLKNHWIPTPLFPHLYSSSAPVSASASASVSSASSVSSLTEP 57

Query: 49  QLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQ 108
           Q S   Q     R+G      W+KWLLF+PGA++FGLG+WQI RRQDKI ML+YR+ RL 
Sbjct: 58  QSSGGEQ-----RRG------WTKWLLFVPGAVTFGLGSWQILRRQDKINMLDYRRKRLD 106

Query: 109 MDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLM 168
           ++P+  +    L E L SLEFRRV  +G FDE++SIYVGPRSRSISGVTENGYY+ITPLM
Sbjct: 107 LEPIPGSNLYSLNEKLDSLEFRRVKAKGFFDEKKSIYVGPRSRSISGVTENGYYLITPLM 166

Query: 169 PIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLA-PSVQQSQQSSWWWFWLK 227
           PIP++P SV+SP+LVNRGWVPRSWRDK  +     EQ  N+A PS+Q+S++SSWW FW K
Sbjct: 167 PIPDDPDSVQSPILVNRGWVPRSWRDKFLQDLPVDEQSKNIASPSIQESERSSWWRFWSK 226

Query: 228 KPNIVE 233
           KP  VE
Sbjct: 227 KPKTVE 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499121|ref|XP_003619849.1| Surfeit locus protein [Medicago truncatula] gi|355494864|gb|AES76067.1| Surfeit locus protein [Medicago truncatula]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 145/193 (75%), Gaps = 12/193 (6%)

Query: 38  SSAAAALSSAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKI 97
           SSAAA   S P LSSSS        G A     SKW L+LPGAI+FGLG+WQI RR+DKI
Sbjct: 31  SSAAAVSDSDPTLSSSSDSN-----GKA-----SKWWLYLPGAIAFGLGSWQIVRREDKI 80

Query: 98  KMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVT 157
           KMLEYR  RLQM+PL+ +   P +E+L SLEFR+V+C+GVFD+++SIYVGPRSRSISGVT
Sbjct: 81  KMLEYRGKRLQMEPLKFSGAYPSSEELDSLEFRKVVCKGVFDDKKSIYVGPRSRSISGVT 140

Query: 158 ENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQ 217
           ENGYYVITPLMP+ ++P SV SP+LVNRGWVPRSW+DK  E S D EQ  +  PS  Q+ 
Sbjct: 141 ENGYYVITPLMPVHDHPDSVSSPILVNRGWVPRSWKDKFLEASHD-EQFADPLPSPSQAD 199

Query: 218 QS-SWWWFWLKKP 229
            + SWW FW K+P
Sbjct: 200 GTRSWWRFWSKEP 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531142|ref|XP_003534137.1| PREDICTED: surfeit locus protein 1-like [Glycine max]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 167/267 (62%), Gaps = 21/267 (7%)

Query: 9   VASISKTLTKLGGGSS-FLLNHRAPPRLYSSSAAAALSSAPQLSSSSQDQENVRKGSAPS 67
           +  +S+T    GG +S   L  R       ++ ++   S P L SSS+ Q   RK S   
Sbjct: 2   LTHLSRTPAACGGATSKHFLVLRQFSSAAGAAVSSVSDSDPTLPSSSESQ---RKAS--- 55

Query: 68  STWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSL 127
               +WLLFLPGAI+FGLGTWQI RR++KIKMLEYR+NRLQM+PL+ +      E+L SL
Sbjct: 56  ----RWLLFLPGAITFGLGTWQIIRREEKIKMLEYRENRLQMEPLKFSSAYSSNEELDSL 111

Query: 128 EFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGW 187
           EFR+V+C+G FD+++SIYVGPRSRSISG+TENGYY+ITPLMP+PN P SV  P+LVNRGW
Sbjct: 112 EFRKVVCKGYFDDKKSIYVGPRSRSISGITENGYYIITPLMPVPNCPDSVSFPILVNRGW 171

Query: 188 VPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELL-----VLFVGVR 242
           VPRSW+DK  E S D +    L          SWW FW +KP I + +     +  VGV 
Sbjct: 172 VPRSWKDKFLEASEDEDLEDALPSPSHDDGTKSWWRFWSRKPVIEDQVASVTPIEVVGVV 231

Query: 243 SQAFLYQQMIQAPVN---GSMWMFLQL 266
            ++   +  I  P N    S W ++ +
Sbjct: 232 RES--EKPSIFVPANDPKASQWFYVDV 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439471|ref|XP_004137509.1| PREDICTED: surfeit locus protein 1-like [Cucumis sativus]

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 146/188 (77%), Gaps = 7/188 (3%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P  SS SQ Q+  R+     S  SKWLLFLPGA++FGLGTWQIFRRQ+KI+ML+YR+ RL
Sbjct: 46  PNSSSLSQPQQKQRE-----SRLSKWLLFLPGALTFGLGTWQIFRRQEKIEMLDYRRKRL 100

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPL 167
            M+P+ +N    L + L  LEFRRVIC+GVFDE++SIYVGPRSRSISGVTENG+YVITPL
Sbjct: 101 LMEPVNINNLLSLEDKLDDLEFRRVICKGVFDEKKSIYVGPRSRSISGVTENGHYVITPL 160

Query: 168 MPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRD-SEQPLNLAPS-VQQSQQSSWWWFW 225
           MPIP  P SV+SPVLVNRGW PR+W++K+ EV++  SEQ  ++ PS VQ  ++SSWW FW
Sbjct: 161 MPIPGLPDSVQSPVLVNRGWAPRTWKEKALEVNQQGSEQSSDIVPSLVQGGERSSWWKFW 220

Query: 226 LKKPNIVE 233
            KK   +E
Sbjct: 221 SKKTESLE 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526790|ref|XP_004170396.1| PREDICTED: surfeit locus protein 1-like, partial [Cucumis sativus]

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 136/165 (82%), Gaps = 2/165 (1%)

Query: 71  SKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFR 130
           SKWLLFLPGA++FGLGTWQIFRRQ+KI+ML+YR+ RL M+P+ +N    L + L  LEFR
Sbjct: 8   SKWLLFLPGALTFGLGTWQIFRRQEKIEMLDYRRKRLLMEPVNINNLLSLEDKLDDLEFR 67

Query: 131 RVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPR 190
           RVIC+GVFDE++SIYVGPRSRSISGVTENG+YVITPLMPIP  P SV+SPVLVNRGW PR
Sbjct: 68  RVICKGVFDEKKSIYVGPRSRSISGVTENGHYVITPLMPIPGLPDSVQSPVLVNRGWAPR 127

Query: 191 SWRDKSSEVSRD-SEQPLNLAPS-VQQSQQSSWWWFWLKKPNIVE 233
           +W++K+ EV++  SEQ  ++ PS VQ  ++SSWW FW KK   +E
Sbjct: 128 TWKEKALEVNQQGSEQSSDIVPSLVQGGERSSWWKFWSKKTESLE 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637054|gb|ACU18859.1| unknown [Glycine max]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 134/186 (72%), Gaps = 10/186 (5%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P L SSS  Q   RK S       +WLLFLPGAI+FGLGTWQI RR++KIKMLEYR+ RL
Sbjct: 41  PTLPSSSDSQ---RKAS-------RWLLFLPGAITFGLGTWQIGRREEKIKMLEYREKRL 90

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPL 167
           QM+PL+ +      E+L SLEFR+V+C+G FD+++S+YVGPRSRSISGVTENGYY+ITPL
Sbjct: 91  QMEPLKFSSAYSSDEELDSLEFRKVVCKGYFDDKKSVYVGPRSRSISGVTENGYYIITPL 150

Query: 168 MPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLK 227
           MP+PN P SV  P+LVNRGWVPRSW+DK  E S+D +    L          SWW FW K
Sbjct: 151 MPVPNCPDSVSIPILVNRGWVPRSWKDKFLEASQDEDLEDALPSPSHVDGSKSWWRFWSK 210

Query: 228 KPNIVE 233
           KP I +
Sbjct: 211 KPVIED 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520667|ref|XP_003528982.1| PREDICTED: surfeit locus protein 1-like [Glycine max]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 134/186 (72%), Gaps = 10/186 (5%)

Query: 48  PQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRL 107
           P L SSS  Q   RK S       +WLLFLPGAI+FGLGTWQI RR++KIKMLEYR+ RL
Sbjct: 41  PTLPSSSDSQ---RKAS-------RWLLFLPGAITFGLGTWQIGRREEKIKMLEYREKRL 90

Query: 108 QMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPL 167
           QM+PL+ +      E+L SLEFR+V+C+G FD+++S+YVGPRSRSISGVTENGYY+ITPL
Sbjct: 91  QMEPLKFSSAYSSDEELDSLEFRKVVCKGYFDDKKSVYVGPRSRSISGVTENGYYIITPL 150

Query: 168 MPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLK 227
           MP+PN P SV  P+LVNRGWVPRSW+DK  E S+D +    L          SWW FW K
Sbjct: 151 MPVPNCPDSVSIPILVNRGWVPRSWKDKFLEASQDEDLEDALPSPSHVDGSKSWWRFWSK 210

Query: 228 KPNIVE 233
           KP I +
Sbjct: 211 KPVIED 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401683|ref|NP_566592.1| Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana] gi|75203836|sp|Q9SE51.1|SURF1_ARATH RecName: Full=Surfeit locus protein 1; Short=Surfeit 1; AltName: Full=Cytochrome c oxidase assembly protein SURF1; AltName: Full=Protein EMBRYO DEFECTIVE 3121; AltName: Full=Surfeit locus 1 cytochrome c oxidase biogenesis protein gi|6630873|gb|AAF19609.1|AF182953_1 Surfeit 1 [Arabidopsis thaliana] gi|89000977|gb|ABD59078.1| At3g17910 [Arabidopsis thaliana] gi|332642502|gb|AEE76023.1| Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 137/181 (75%), Gaps = 8/181 (4%)

Query: 55  QDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRL 114
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++L
Sbjct: 63  PPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKL 117

Query: 115 NITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNP 174
           NI  PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP + 
Sbjct: 118 NIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDL 177

Query: 175 QSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNIV 232
            S++SP+LVNRGWVPRSWR+KS E S ++E   N +   +   ++  SWW FW K P I 
Sbjct: 178 DSMQSPILVNRGWVPRSWREKSQE-SAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVIT 236

Query: 233 E 233
           +
Sbjct: 237 K 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830428|ref|XP_002883096.1| hypothetical protein ARALYDRAFT_479277 [Arabidopsis lyrata subsp. lyrata] gi|297328936|gb|EFH59355.1| hypothetical protein ARALYDRAFT_479277 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/182 (58%), Positives = 137/182 (75%), Gaps = 8/182 (4%)

Query: 54  SQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLR 113
           +  QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++
Sbjct: 62  APPQENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQRRLNMEPMK 116

Query: 114 LNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNN 173
           LNI  P  ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISGVTENG+Y+ITPLMPIP +
Sbjct: 117 LNIDHPPDKNLDALEFRRVSCKGVFDEQRSIYLGPRSRSISGVTENGFYLITPLMPIPGD 176

Query: 174 PQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQ--QSQQSSWWWFWLKKPNI 231
             S++SP+LVNRGWVPRSWR+KS E S +++   N +   +   ++  SWW FW K P I
Sbjct: 177 LDSMQSPILVNRGWVPRSWREKSPE-STEADFAANQSTKAESPSNEPKSWWKFWSKTPVI 235

Query: 232 VE 233
            +
Sbjct: 236 TK 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2088510	354	SURF1 "AT3G17910" [Arabidopsis	0.456	0.401	0.668	2.8e-50
TAIR|locus:2198030	384	AT1G48510 "AT1G48510" [Arabido	0.395	0.320	0.531	2e-31
RGD|620527	306	Surf1 "surfeit 1" [Rattus norv	0.376	0.382	0.364	7.6e-14
UNIPROTKB|F1M9B1	337	Surf4 "Protein Surf4" [Rattus	0.376	0.347	0.364	1.3e-13
RGD|1561980	733	Surf4 "surfeit 4" [Rattus norv	0.376	0.159	0.364	8e-13
MGI|MGI:98443	306	Surf1 "surfeit gene 1" [Mus mu	0.379	0.385	0.345	8.2e-13
POMBASE|SPBC1215.01	290	shy1 "SURF-family protein Shy1	0.369	0.396	0.374	1.1e-12
UNIPROTKB|Q15526	300	SURF1 "Surfeit locus protein 1	0.379	0.393	0.343	2.5e-12
UNIPROTKB|Q800L1	309	SURF1 "Surfeit locus protein 1	0.443	0.446	0.331	4.1e-12
UNIPROTKB|F1PFN9	301	SURF1 "Uncharacterized protein	0.379	0.392	0.335	6.5e-12

TAIR|locus:2088510 SURF1 "AT3G17910" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 99/148 (66%), Positives = 123/148 (83%)

Query:    57 QENVRKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNI 116
             QEN R      S WS+ LLFLPGAI+FGLG+WQI RR++K K LEY+Q RL M+P++LNI
Sbjct:    65 QENKR-----GSKWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNI 119

Query:   117 TSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQS 176
               PL ++L +LEFRRV C+GVFDEQRSIY+GPRSRSISG+TENG++VITPLMPIP +  S
Sbjct:   120 DHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDLDS 179

Query:   177 VKSPVLVNRGWVPRSWRDKSSEVSRDSE 204
             ++SP+LVNRGWVPRSWR+KS E S ++E
Sbjct:   180 MQSPILVNRGWVPRSWREKSQE-SAEAE 206

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2198030 AT1G48510 "AT1G48510" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/128 (53%), Positives = 92/128 (71%)

Query:    71 SKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFR 130
             S  L +L G  ++GLG    F  Q +++ L+ R+  L+M P++LN T    +DL  L FR
Sbjct:    54 SALLWYLVGFTTYGLGETYKFL-QTQVEHLDSRKQCLEMKPMKLNTT----KDLDGLGFR 108

Query:   131 RVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPR 190
             RV+C+G+FDEQRSIYVGP+ RS+S  +E G+YVITPL+PIPN P S+KSP+LVNRGWVP 
Sbjct:   109 RVVCKGIFDEQRSIYVGPKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPS 168

Query:   191 SWRDKSSE 198
              W++ S E
Sbjct:   169 DWKENSLE 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

RGD|620527 Surf1 "surfeit 1" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:    63 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 118

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   119 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 173

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   174 CSDLGVTILVNRGFVPR 190

GO:0003674 "molecular_function" evidence=ND

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|F1M9B1 Surf4 "Protein Surf4" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:    94 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 149

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   150 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 204

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   205 CSDLGVTILVNRGFVPR 221

GO:0016020 "membrane" evidence=IEA

RGD|1561980 Surf4 "surfeit 4" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 8.0e-13, P = 8.0e-13
 Identities = 50/137 (36%), Positives = 81/137 (59%)

Query:    65 APSSTWSKW-LLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             A   ++ +W LLF+P A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +
Sbjct:   490 AEDDSFLQWFLLFIP-ATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--E 545

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNN 173
             LK+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G YV+TP      +
Sbjct:   546 LKNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAYVVTPF-----H 600

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   601 CSDLGVTILVNRGFVPR 617

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032527 "protein exit from endoplasmic reticulum" evidence=ISO

GO:0034498 "early endosome to Golgi transport" evidence=ISO

MGI|MGI:98443 Surf1 "surfeit gene 1" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 47/136 (34%), Positives = 78/136 (57%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W L L  A +FGLGTWQ+ RR+ K+K++   ++R+  +P+ L    P+  +L
Sbjct:    63 AEDDSFLQWFLLLIPATAFGLGTWQVQRRKWKLKLIAELESRVMAEPIPLP-ADPM--EL 119

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGV--TENGYYVITPLMPIPNNP 174
             K+LE+R V  +G FD  + +Y+ PR+        R    +  TE+G +V+TP      + 
Sbjct:   120 KNLEYRPVKVRGHFDHSKELYIMPRTMVDPVREARDAGRLSSTESGAHVVTPF-----HC 174

Query:   175 QSVKSPVLVNRGWVPR 190
               +   +LVNRG+VPR
Sbjct:   175 SDLGVTILVNRGFVPR 190

GO:0004129 "cytochrome-c oxidase activity" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0015992 "proton transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

POMBASE|SPBC1215.01 shy1 "SURF-family protein Shy1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 183 (69.5 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 49/131 (37%), Positives = 80/131 (61%)

Query:    71 SKWLLFLPGAI---SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTE-DLKS 126
             +K+L+ L  A+   +F LGTWQ+ RR+ K+ ++     RLQ   + L  T  +TE D K 
Sbjct:    36 NKFLVGLLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKT--VTEQDTKK 93

Query:   127 LEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRG 186
             LE+ RV+ +GVF   + + VGPR++   G  + GY+V+TP + + +  +     +LVNRG
Sbjct:    94 LEWTRVLLRGVFCHDQEMLVGPRTKE--G--QPGYHVVTPFI-LDDGRR-----ILVNRG 143

Query:   187 WVPRSWRDKSS 197
             W+ RS+ ++SS
Sbjct:   144 WIARSFAEQSS 154

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=ISO

UNIPROTKB|Q15526 SURF1 "Surfeit locus protein 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 47/137 (34%), Positives = 78/137 (56%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W+L L    +FGLGTWQ+ RR+ K+ ++   ++R+  +P+ L    P+  +L
Sbjct:    56 AEDDSFLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRVLAEPVPLP-ADPM--EL 112

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRS-----RS------ISGVTENGYYVITPLMPIPNN 173
             K+LE+R V  +G FD  + +Y+ PR+     R       IS  T++G YV+TP      +
Sbjct:   113 KNLEYRPVKVRGCFDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPF-----H 167

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   168 CTDLGVTILVNRGFVPR 184

GO:0016021 "integral to membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0008535 "respiratory chain complex IV assembly" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0006754 "ATP biosynthetic process" evidence=IMP

GO:0006119 "oxidative phosphorylation" evidence=IMP

UNIPROTKB|Q800L1 SURF1 "Surfeit locus protein 1" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 52/157 (33%), Positives = 79/157 (50%)

Query:    64 SAPSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTED 123
             +A    W KW L L    +F LGTWQI RR+ K+ ++    +RL  +P+ L +  P+  +
Sbjct:    65 AAGEDAWLKWGLLLVPLTAFCLGTWQIQRRKWKLDLIAQLASRLSSEPIPLTL-DPM--E 121

Query:   124 LKSLEFRRVICQGVFDEQRSIYVGPRS--------RSISGVT---ENGYYVITPLMPIPN 172
             LK LE+R V  +G FD  + +Y+ PRS        R    +T   ENG  VITP      
Sbjct:   122 LKELEYRPVKVRGHFDHSKELYILPRSLVDPEREAREAGKLTSHAENGANVITPFYCT-- 179

Query:   173 NPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNL 209
                 +   +LVNRG+VP+      + +    E+ ++L
Sbjct:   180 ---ELGVTILVNRGFVPKKKLKPETRLKGQIEEEIDL 213

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

UNIPROTKB|F1PFN9 SURF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 46/137 (33%), Positives = 76/137 (55%)

Query:    65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDL 124
             A   ++ +W L L    +FGLGTWQ+ RR+ K++++   ++R+  +P+ L    P+  +L
Sbjct:    57 AQEDSFLQWFLLLIPVTAFGLGTWQVQRRKWKLQLIAELESRVMAEPIPLP-ADPM--EL 113

Query:   125 KSLEFRRVICQGVFDEQRSIYVGPRSR-----------SISGVTENGYYVITPLMPIPNN 173
             K+LE+R V  +G FD  + +Y+ PR+             +S   E+G YVITP      +
Sbjct:   114 KNLEYRPVKVRGHFDHSKELYMMPRTMVDPAREAREAGRLSSSPESGAYVITPF-----H 168

Query:   174 PQSVKSPVLVNRGWVPR 190
                +   +LVNRG+VPR
Sbjct:   169 CTDLGVTILVNRGFVPR 185

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam02104	206	pfam02104, SURF1, SURF1 family	2e-28
cd06662	202	cd06662, SURF1, SURF1 superfamily	2e-23
COG3346	252	COG3346, COG3346, Uncharacterized conserved protei	3e-18

>gnl|CDD|216876 pfam02104, SURF1, SURF1 family

 Score =  108 bits (271), Expect = 2e-28
 Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 27/166 (16%)

Query: 75  LFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVIC 134
                A+  GLG WQ+ R   K  ++   + RL   P+ L       +D   LE+RRV  
Sbjct: 1   TLALFAVLVGLGFWQLQRLAWKEALIARIEARLAAPPVPL---PEALDDPADLEYRRVTV 57

Query: 135 QGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRD 194
            G F   + + V  R+R        GY V+TP              VLVNRGWVP    D
Sbjct: 58  TGTFLPDQEVLVDNRTRDG----RAGYRVLTPFRLDDG------RTVLVNRGWVPADKAD 107

Query: 195 KS--------SEVS-----RDSEQ-PLNLAPSVQQSQQSSWWWFWL 226
           +S         EV+     R  E  P +       +  +   W+ L
Sbjct: 108 RSPLPAVPPPGEVTVTGLLRAPEPDPRSGGLFTPDNDPAPNRWYSL 153

Length = 206

>gnl|CDD|119401 cd06662, SURF1, SURF1 superfamily

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 26/183 (14%)

Query: 83  FGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQR 142
            GLG WQ+ R + K  ++   + RL   P+ L     L   L+ LE+RRV   G F  ++
Sbjct: 2   VGLGFWQLQRAEWKEALIARIEARLAAPPVPLP--ELLAPPLEDLEYRRVTVTGTFLPEK 59

Query: 143 SIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRD 202
            + +  R+R        GY V+TP              VLVNRGWVP      +      
Sbjct: 60  EVLLDNRTRD----GRPGYEVLTPFRLDDG------RTVLVNRGWVPADADRPALPAVAP 109

Query: 203 SEQPLNLA----------PSVQQSQQSSWWWFWLKKPNIVELLVLFVGVRSQAFLYQQMI 252
               + +             +  +  ++  W       + + L    G+     + Q   
Sbjct: 110 PTGEVTVTGRLRPPEPRGLFLPPNDPAANPWQNRDLEAMAQAL----GLPLVPLVLQLAS 165

Query: 253 QAP 255
            AP
Sbjct: 166 GAP 168

Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder. Length = 202

>gnl|CDD|225883 COG3346, COG3346, Uncharacterized conserved protein [Function unknown]

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 61  RKGSAPSSTWSKWLLFLPG---AISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNIT 117
            + S     W   LL L     AI  GLGTWQ+ R   K+ ++   + RL   P+ L   
Sbjct: 3   LEASTRRRRWLALLLLLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKL 62

Query: 118 SPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGYYVITPLMPIPNNPQSV 177
               +    LE+RRV   G F   + + +  R          GY V+TP           
Sbjct: 63  LDWADSGADLEYRRVTLTGTFLHDKEVLLYARVT----EGGPGYEVLTPFALDDGR---- 114

Query: 178 KSPVLVNRGWVPRSWRDKSSEVSRDSEQPL 207
              VLVNRG+VPR  ++ S         P+
Sbjct: 115 --TVLVNRGFVPRERKEASPRAEGQPAGPV 142

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
COG3346	252	Uncharacterized conserved protein [Function unknow	100.0
KOG1563	288	consensus Mitochondrial protein Surfeit 1/SURF1/SH	100.0
PF02104	212	SURF1: SURF1 family; InterPro: IPR002994 The surfe	100.0
cd06662	202	SURF1 SURF1 superfamily. Surf1/Shy1 has been impli	100.0
COG4578	128	GutM Glucitol operon activator [Transcription]	81.18

>COG3346 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-40  Score=307.81  Aligned_cols=191  Identities=25%  Similarity=0.356  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEcccccc
Q 021538           73 WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS  152 (311)
Q Consensus        73 lll~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~  152 (311)
                      +++++.++++++||+||++|++||.++|++++++.++||+++++...+....++.+||||+++|+|+|++++++++|..+
T Consensus        18 ~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~~   97 (252)
T COG3346          18 LLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVTE   97 (252)
T ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeeec
Confidence            35555667889999999999999999999999999999999999876433334489999999999999999999999763


Q ss_pred             CCCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCCCc
Q 021538          153 ISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIV  232 (311)
Q Consensus       153 ~~G~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~  232 (311)
                        |  ++||||+|||.+++|      +.|||||||||.+.++..++.+                             ..+
T Consensus        98 --g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~r~~-----------------------------~~~  138 (252)
T COG3346          98 --G--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASPRAE-----------------------------GQP  138 (252)
T ss_pred             --C--CccEEEecccEecCC------cEEEEeCCcccCcccCCCCCCC-----------------------------CCC
Confidence              5  899999999999886      7999999999999887765432                             245


Q ss_pred             cceEEEEEEEeccccccCCccccCC---CCeeEeeCHHHHHHhhCCC----ceEEeeccccc-------hhhhhhhcccc
Q 021538          233 ELLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTL----SILRTPMKMSI-------LATLTLFQKMS  298 (311)
Q Consensus       233 ~g~vtVtGvlr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~----p~~~~a~~~~~-------~~~~~~~~~~~  298 (311)
                      .|+|+|+|++|++|  +.+.|.|.|   .|+||++|+++||+..|..    |++++++...+       ..+...|.+ +
T Consensus       139 ~g~v~I~Gl~r~~e--~~~~~l~~nd~~~~~~y~~d~~~~A~~~gl~~~~~~~~v~ae~~~~pgglp~~~~~~~~~~n-~  215 (252)
T COG3346         139 AGPVTITGLLRPPE--PGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAEGQDNPGGLPVGGVTVIDFPN-N  215 (252)
T ss_pred             CCcEEEEEEEecCC--CccccCcccCcccCeeeeccHHHHHhhcCCCcccceeEEecCCCCCCCCCCCCCCceeccCC-C
Confidence            69999999999999  888899999   9999999999999999975    88999987631       223334444 6


Q ss_pred             eeeeeec
Q 021538          299 VLCFGVQ  305 (311)
Q Consensus       299 ~~~~~~~  305 (311)
                      -||.++|
T Consensus       216 HL~Yait  222 (252)
T COG3346         216 HLSYALT  222 (252)
T ss_pred             cceehhH
Confidence            6666654

>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]

Probab=100.00  E-value=2e-40  Score=306.43  Aligned_cols=179  Identities=36%  Similarity=0.590  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccc
Q 021538           70 WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPR  149 (311)
Q Consensus        70 w~~lll~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR  149 (311)
                      .+.++++++.++.|+||+||+.|++||.++|+..++++.++|++|++...   +.++.|||||.++|.|+|+++++|+||
T Consensus        58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~~---~l~~lEyrrV~~rG~F~H~kEm~vgPR  134 (288)
T KOG1563|consen   58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDLD---DLEGLEYRRVKLRGIFLHDKEMYVGPR  134 (288)
T ss_pred             hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCChh---HhcccceEEEEEEEEEcccceEEeccc
Confidence            34446667778899999999999999999999999999999999998762   578999999999999999999999999


Q ss_pred             cccCCCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCC
Q 021538          150 SRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKP  229 (311)
Q Consensus       150 ~~~~~G~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p  229 (311)
                      .+......+.||+|+|||.++|.     +..|||||||||...-++..+.                            ..
T Consensus       135 ~r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~petR~----------------------------~~  181 (288)
T KOG1563|consen  135 TRSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPETRY----------------------------PS  181 (288)
T ss_pred             cccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCccccc----------------------------cc
Confidence            98744333568999999999875     3699999999998765544331                            11


Q ss_pred             CCccceEEEEEEEeccccccCCccccCC---CCeeEeeCHHHHHHhhCCCceEEeecccc
Q 021538          230 NIVELLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTLSILRTPMKMS  286 (311)
Q Consensus       230 ~~~~g~vtVtGvlr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~p~~~~a~~~~  286 (311)
                      ..++|+|+|+|+||++|  .++.|++.|   +|.|||+|+++||++.|++||+|||.+.+
T Consensus       182 ~~~~~~v~l~gvVRk~e--~r~~f~~~n~pe~~~w~y~Dl~~mA~~~G~~Pi~ida~y~~  239 (288)
T KOG1563|consen  182 GQPEGHVELVGVVRKTE--TRPQFTPVNKPESNVWYYRDLPKMARATGTEPILIDALYDD  239 (288)
T ss_pred             CCccceEEEEEEEecCC--CCCCcccccCCcccceeecCHHHHHHHcCCCceEeecccCc
Confidence            35789999999999999  999999999   79999999999999999999999998773

>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []

Probab=100.00  E-value=5.8e-37  Score=276.54  Aligned_cols=171  Identities=30%  Similarity=0.393  Sum_probs=145.6

Q ss_pred             HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCC
Q 021538           76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG  155 (311)
Q Consensus        76 ~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~~~G  155 (311)
                      ++++++|++||+||++|++||++++++++++.+++|+++++....+...++.+||+|+++|+|++++++||+||.++  |
T Consensus         2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~~--g   79 (212)
T PF02104_consen    2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSRD--G   79 (212)
T ss_pred             ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEeccccC--C
Confidence            35678899999999999999999999999999999999998863222456899999999999999999999999984  5


Q ss_pred             CCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCC-cccccCCCCcCCCCcccccccccchhhhhccCCCCccc
Q 021538          156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKS-SEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEL  234 (311)
Q Consensus       156 ~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~~g  234 (311)
                        ++||+|+|||++++|      ..|||||||||.+..++. .+. +                          .|+.+.|
T Consensus        80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~~p~-~--------------------------~p~~~~g  124 (212)
T PF02104_consen   80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAALPE-Q--------------------------VPAPPSG  124 (212)
T ss_pred             --CceEEEEEEEEecCC------cEEEEEecccccccCCcccccc-c--------------------------ccCCCCc
Confidence              999999999999866      699999999998755432 111 0                          0234579


Q ss_pred             eEEEEEEEeccccccC-CccccCC---CCeeEeeCHHHHHHhhC--CCceEEeeccc
Q 021538          235 LVLFVGVRSQAFLYQQ-MIQAPVN---GSMWMFLQLLVLVGSLK--TLSILRTPMKM  285 (311)
Q Consensus       235 ~vtVtGvlr~~E~~~~-~~f~p~n---~~~w~~iDl~~ma~~lg--~~p~~~~a~~~  285 (311)
                      +++|+|+|+++|  .+ +.|.+.|   .++|+++|+++|++.+|  ..|++|+....
T Consensus       125 ~~~v~G~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~a~~~g~~~~p~~l~~~~~  179 (212)
T PF02104_consen  125 EVTVTGRLRPPE--PRGGIFTPENDPEPNRWQSIDLEAMAQALGLPLAPFYLQQDAD  179 (212)
T ss_pred             eEEEEEEEECCC--CcCCcCccCCCCCCceEEecCHHHHHHHhCCCCCCeEEEeccC
Confidence            999999999988  66 5788876   99999999999999999  78999998776

Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane

>cd06662 SURF1 SURF1 superfamily

Probab=100.00  E-value=3.5e-33  Score=248.83  Aligned_cols=152  Identities=28%  Similarity=0.399  Sum_probs=131.8

Q ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 021538           82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY  161 (311)
Q Consensus        82 ~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~~~G~~~~GY  161 (311)
                      |++||+||++|++||+++|++++++.+++|+++++.....  .++.+||+|+++|+|+++++++++||.++  |  +.||
T Consensus         1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~~--g--~~Gy   74 (202)
T cd06662           1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTRD--G--RPGY   74 (202)
T ss_pred             CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEeccccC--C--CCce
Confidence            6799999999999999999999999999999999876422  46789999999999999999999999974  5  8999


Q ss_pred             EEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCCCccceEEEEEE
Q 021538          162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGV  241 (311)
Q Consensus       162 ~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~~g~vtVtGv  241 (311)
                      +|++||++++|      +.|||||||||.+..+...+.                             ...+.|+++|+|+
T Consensus        75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~~~~-----------------------------~~~p~g~~~v~G~  119 (202)
T cd06662          75 EVLTPFRLDDG------RTVLVNRGWVPADADRPALPA-----------------------------VAPPTGEVTVTGR  119 (202)
T ss_pred             EEEeeeEECCC------CEEEEECCCCCCCccCcccCC-----------------------------CCCCCccEEEEEE
Confidence            99999999876      689999999998866543221                             1246799999999


Q ss_pred             EeccccccCCccccCC---CCeeEeeCHHHHHHhhCCC
Q 021538          242 RSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTL  276 (311)
Q Consensus       242 lr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~  276 (311)
                      ++.+|  .++.+.+.+   .+.|+.+|+++|++.+|..
T Consensus       120 l~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  155 (202)
T cd06662         120 LRPPE--PRGLFLPPNDPAANPWQNRDLEAMAQALGLP  155 (202)
T ss_pred             EecCC--CCCCcCCCCCcccccccccCHHHHHHHHCCC
Confidence            99999  777776655   7889999999999999985

Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.

>COG4578 GutM Glucitol operon activator [Transcription]

Probab=81.18  E-value=1.1  Score=38.38  Aligned_cols=30  Identities=23%  Similarity=0.187  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 021538           69 TWSKWLLFLPGAISFGLGTWQIFRRQDKIK   98 (311)
Q Consensus        69 ~w~~lll~v~~~v~v~LG~WQl~R~~wK~~   98 (311)
                      .|+.++++++..+++.||-||+.|.+.--.
T Consensus         9 ~~lI~~~vi~w~~q~algwwQ~srfq~af~   38 (128)
T COG4578           9 PALIALAVIAWCAQLALGWWQWSRFQSAFG   38 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455556666667789999999999986544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00