Citrus Sinensis ID: 021544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Secondary Structure (PSIPRED)
ccccccccccEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHccccccccccccccHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHccEEEEEEEcc
Coil and Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlasTRVRLsfqeippilsldssidlnsvFSRTESLLYTLADAAVSldsasggaastsadgatqknggwfGFISEAMEFVLKILKDgidavhvpySYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfvdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqmiqlkrthflfssffhs
Flexible Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlastrvRLSFQeippilsldssidLNSVFSRTESLLYTLADAAVSLDSASGGaastsadgatqkNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Low Complexity Region (SEG)
MTKTLISSPPFVGTplpspssslsrhglhrlpNRRLASTRVRLSFQEippilsldssidlNSVFSRTESLLYtladaavsldsasggaastsadgatQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Disordered region (IsUnstruct)
***************************************RVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVS*******************NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSF***
Disordered Region (DISOPRED)
******SSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTL***NLQPKIKAI***************SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYAS**************THFLFSSFFHS
Disordered Region (DISEMBL)
MTKTLISSPPFVGT************GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLD*************ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Disordered Region (DISPRO)
*********PFVGTPLPSPSSSLS*HGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFFHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q8LBP4	462	Inner membrane protein AL	yes	no	0.884	0.595	0.738	1e-121
Q9FY06	442	Inner membrane protein PP	N/A	no	0.897	0.631	0.760	1e-121
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.723	0.450	0.709	1e-87
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.607	0.447	0.639	9e-70
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.662	0.416	0.591	1e-68
O66103	622	Membrane protein insertas	yes	no	0.498	0.249	0.382	2e-23
A0LLH3	553	Membrane protein insertas	yes	no	0.495	0.278	0.347	7e-22
B3QYV6	586	Membrane protein insertas	yes	no	0.517	0.274	0.370	3e-21
A1QZM8	545	Membrane protein insertas	yes	no	0.508	0.289	0.331	1e-20
Q8Y3I2	287	Membrane protein insertas	yes	no	0.491	0.533	0.317	5e-20

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/291 (73%), Positives = 238/291 (81%), Gaps = 16/291 (5%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQ
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQ 303

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/296 (76%), Positives = 247/296 (83%), Gaps = 17/296 (5%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQ
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQ 281

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.

Pisum sativum (taxid: 3888)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/227 (70%), Positives = 193/227 (85%), Gaps = 2/227 (0%)

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
           E+LLYT+ADAAVS        A T+    T ++  WF  I+  ME +LK+LKDG+  VHV
Sbjct: 63  ENLLYTIADAAVSSSETFESVAGTTT--KTTQSNDWFSGIANYMETILKVLKDGLSTVHV 120

Query: 128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
           PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct: 121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query: 188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
           LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct: 181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query: 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           GSGISWL PF++GHPPLGW DT AYLVLP+LLV SQY S+++M+  Q
Sbjct: 241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQ 287

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  263 bits (673), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 156/194 (80%), Gaps = 5/194 (2%)

Query: 97  TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES 156
           T   GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVES
Sbjct: 67  TLAEGGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVES 126

Query: 157 TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQA 216
           TL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY A
Sbjct: 127 TLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNA 186

Query: 217 LSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLP 276
           LSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF +G PP+GW + AAYLV+P
Sbjct: 187 LSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241

Query: 277 VLLVVSQYASMELM 290
           VLLV SQYAS +++
Sbjct: 242 VLLVASQYASQKII 255

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 165/208 (79%), Gaps = 2/208 (0%)

Query: 88  AASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATF 147
           A  ++A  A Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+
Sbjct: 98  AVDSAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTY 157

Query: 148 PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATI 207
           PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATI
Sbjct: 158 PLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATI 217

Query: 208 PVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF-VDGHPPLG 265
           P++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+G
Sbjct: 218 PIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIG 277

Query: 266 WHDTAAYLVLPVLLVVSQYASMELMKPP 293
           W D AAYL LP+LLV  QYAS  +  PP
Sbjct: 278 WEDAAAYLTLPLLLVAVQYASSSVTSPP 305

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 15/170 (8%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIIL+T+ +KV  FPLTK+   +   MQ LQP ++ IQ+RY GN ++I  E ++LY
Sbjct: 416 NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQPHMQRIQERYKGNTQKIHEEMAKLY 475

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           R+A  NPL+GCLPTL  +P+   +Y+  +N           +WIP LS   ++       
Sbjct: 476 REAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRGAMFIPYWIPDLSLADSV------- 528

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLK 299
              W LPF    P   W       +LPVL VVSQ    +L + P   Q K
Sbjct: 529 ---WTLPF--ALPVTQWTQMR---MLPVLYVVSQIMFSKLTQVPHTEQQK 570

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 16/170 (9%)

Query: 96  ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVE 155
           A+  + GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +
Sbjct: 332 ASAVDYGWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQ 385

Query: 156 STLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 215
           S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+
Sbjct: 386 SMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYR 445

Query: 216 ALSNVANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPL 264
            L+      L  E F  WI  L+ P  +        I + +P++ G P L
Sbjct: 446 MLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLPVL 486

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 96/181 (53%), Gaps = 20/181 (11%)

Query: 126 HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLET 185
           HV  SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++Y  N E++Q E 
Sbjct: 366 HVD-SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQYKDNPEKLQAEI 424

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
           S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W   LS P +I   
Sbjct: 425 SGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWSNDLSVPDSILD- 481

Query: 246 QSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQM-IQLKRTHFL 304
                    LPF    P  G H +    V+P+L+ V+ +   +L    Q   Q+K   +L
Sbjct: 482 ---------LPF--SIPLYGDHVS----VIPILMGVAVFFQQKLTPSTQTNDQMKFMMYL 526

Query: 305 F 305
           F
Sbjct: 527 F 527

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

>sp|A1QZM8|YIDC_BORT9 Membrane protein insertase YidC OS=Borrelia turicatae (strain 91E135) GN=yidC PE=3 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 23/181 (12%)

Query: 106 FISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQP 165
           FI   M+ +++I  D I     P ++G +II LT++V++  FPLT K   +T  +  LQP
Sbjct: 322 FIQVPMQLIMQIFYDVI-----P-NWGLSIIFLTIVVRILIFPLTFKSFRATAELSKLQP 375

Query: 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL 225
           K+K IQ ++  + +R+  E  +LYR+ GVNPL GCLP L  +PV+  LY  ++N      
Sbjct: 376 KMKEIQVKFKNDPKRLNEEMGKLYREEGVNPLGGCLPILLQLPVFFALYGLVNNF----F 431

Query: 226 LTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA 285
           L  G  +IP      +I     G  I +      G+    W D     +LP +++++Q  
Sbjct: 432 LLRGASFIPGWIDDLSI-----GDSIYYF-----GYKVFVWTDIR---ILPFIMMITQLL 478

Query: 286 S 286
           S
Sbjct: 479 S 479

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Borrelia turicatae (strain 91E135) (taxid: 314724)

>sp|Q8Y3I2|YIDC2_LISMO Membrane protein insertase YidC 2 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=yidC2 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 11/164 (6%)

Query: 74  LADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGF 133
           +A   + L +   G   ++    ++  G W  +I   + + +    D         SY  
Sbjct: 13  IASLVIGLMAVLSGCGYSTDPITSESTGFWSHYIVFPLSWTITWFSDLFGG-----SYAV 67

Query: 134 AIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLETSRLY 189
            II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET RLY
Sbjct: 68  GIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQETMRLY 127

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 233
           ++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+
Sbjct: 128 QENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM 169

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.942	0.648	0.986	1e-153
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.932	0.640	0.804	1e-133
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.935	0.639	0.820	1e-131
224054791	451	inner membrane protein [Populus trichoca	0.922	0.636	0.790	1e-125
356542455	450	PREDICTED: inner membrane protein PPF-1,	0.971	0.671	0.752	1e-124
356539022	450	PREDICTED: inner membrane protein PPF-1,	0.971	0.671	0.742	1e-122
255581095	449	Inner membrane protein PPF-1, chloroplas	0.913	0.632	0.797	1e-121
15226968	462	inner membrane protein ALBINO3 [Arabidop	0.884	0.595	0.738	1e-120
297826255	458	hypothetical protein ARALYDRAFT_901831 [	0.881	0.598	0.756	1e-119
30684018	348	inner membrane protein ALBINO3 [Arabidop	0.884	0.790	0.738	1e-119

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/294 (98%), Positives = 291/294 (98%), Gaps = 1/294 (0%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60
           M KTLISSPPFVGTPLPSPSSSLSRHGLH LPNRRLASTRVRLSFQEIPPILSLDSSIDL
Sbjct: 1   MAKTLISSPPFVGTPLPSPSSSLSRHGLHPLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60

Query: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120
           NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD
Sbjct: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120

Query: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180
           GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER
Sbjct: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180

Query: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240
           IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT
Sbjct: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240

Query: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA ME+MKPPQ
Sbjct: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA-MEIMKPPQ 293

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/296 (80%), Positives = 259/296 (87%), Gaps = 6/296 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRH-GLHRLPNRRLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS PFVG+ LPS    LSRH  LH LP+RR  +TRV  SF ++PP+ +  SS+D
Sbjct: 1   MAKTLISSSPFVGSSLPS----LSRHLPLHTLPHRRHLTTRVNFSFHQLPPVHTFHSSLD 56

Query: 60  LNSVFSRTESLLYTLADAAVSLDSA-SGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
             ++ SRTE LLYTLADAAV++DS  S  A STS D A QKNGGWFGFIS+AME VLK+L
Sbjct: 57  FQAIVSRTEGLLYTLADAAVAVDSTLSAAATSTSPDTAVQKNGGWFGFISDAMEVVLKVL 116

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           K  ++AVH+PYSYGFAIILLT+IVKVATFPLTK+QVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 117 KGSLEAVHIPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 176

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 177 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 236

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           PTTIAARQSG+GISWLLPFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQ
Sbjct: 237 PTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQ 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/296 (82%), Positives = 262/296 (88%), Gaps = 5/296 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 237

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           PTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQ
Sbjct: 238 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQ 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/296 (79%), Positives = 257/296 (86%), Gaps = 9/296 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+GTPLPS    LSRH L    NRR  STR++LS  + IPPI   L SS+
Sbjct: 1   MARTLLSSPPFIGTPLPS----LSRHALTT--NRRFISTRIKLSLHDNIPPIHHHLHSSV 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D N++ SR E  LYTLADAAV++DSA+   +S +AD A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAA-QKNGGWFGFISDGMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPY+YGFAIILLT+ VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 114 KDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           PTTIAARQSGSGISWL PFVDGHPPLGWHDTAAYLVLPVLL+ SQY SME+MKPPQ
Sbjct: 234 PTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQ 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542455|ref|XP_003539682.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/311 (75%), Positives = 253/311 (81%), Gaps = 9/311 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISSP F+GTPLPS    L RH    LP+R R  +T+V +S  EIPPI SL  SID
Sbjct: 1   MAKTLISSPSFIGTPLPS----LPRH---HLPHRTRFVTTKVHVSLHEIPPIQSLSHSID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAASTSA-DGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A     + S  D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQL 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQ    
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPS 293

Query: 299 KRTHFLFSSFF 309
           ++   L   F 
Sbjct: 294 QKNQLLILKFL 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539022|ref|XP_003537999.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/311 (74%), Positives = 254/311 (81%), Gaps = 9/311 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS  F+GTPLPS    L RH    LP+R RL +T+V +S  EIPPI S+  +ID
Sbjct: 1   MAKTLISSQSFIGTPLPS----LPRH---HLPHRTRLVATKVLVSLHEIPPIHSISRNID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAAST-SADGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A    ++  + D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADSAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQL 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQ    
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPS 293

Query: 299 KRTHFLFSSFF 309
           ++   L   F 
Sbjct: 294 QKNQLLILKFL 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 257/297 (86%), Gaps = 13/297 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHR--LPNRR-LASTRVRLSFQEIPPILSLDSS 57
           M KTLISSP F+G PLPS SS   RHGL    LP+RR +++T+V+ S  EIPPI  LDS 
Sbjct: 1   MAKTLISSPSFIGAPLPSSSS---RHGLQHSLLPSRRFISTTKVKFSLHEIPPITHLDS- 56

Query: 58  IDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKI 117
           +D NS+ SR ESLLYTLADAAV++       +S + D A QKN GWFGFISE MEFVLK+
Sbjct: 57  VDFNSIVSRAESLLYTLADAAVAV------DSSAATDTAVQKNNGWFGFISEGMEFVLKV 110

Query: 118 LKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177
           LKDG+ +VHVPYSYGFAIILLTVIVK+AT PLTK+QVESTLAMQNLQPKIKAIQQRYAGN
Sbjct: 111 LKDGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGN 170

Query: 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237
           QERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 
Sbjct: 171 QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 230

Query: 238 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQ
Sbjct: 231 GPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQ 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226968|ref|NP_180446.1| inner membrane protein ALBINO3 [Arabidopsis thaliana] gi|38372238|sp|Q8LBP4.2|ALB3_ARATH RecName: Full=Inner membrane protein ALBINO3, chloroplastic; Flags: Precursor gi|2209332|gb|AAB61458.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana] gi|3927828|gb|AAC79585.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|27311661|gb|AAO00796.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|30387561|gb|AAP31946.1| At2g28800 [Arabidopsis thaliana] gi|330253078|gb|AEC08172.1| inner membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/291 (73%), Positives = 238/291 (81%), Gaps = 16/291 (5%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQ
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQ 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826255|ref|XP_002881010.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata] gi|297326849|gb|EFH57269.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/288 (75%), Positives = 238/288 (82%), Gaps = 14/288 (4%)

Query: 16  LPSPSSSLSRHGL------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSVFSRT 67
           L  PSSSL   G       +R  N +L   ST VR S  EIPP   LDSS+D+ ++ +R 
Sbjct: 17  LIKPSSSLRHSGGGAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAILTRA 76

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADG-ATQKNGGWFGFISEAMEFVLKILKDGIDAVH 126
           ESLLYT+ADAAV      G  +  S D  A QK+GGWFGFIS+ ME VLKILKDG+ AVH
Sbjct: 77  ESLLYTIADAAVV-----GADSVVSTDSSAVQKSGGWFGFISDGMELVLKILKDGLSAVH 131

Query: 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 186
           VPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS
Sbjct: 132 VPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 191

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
           RLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL GPTTIAARQ
Sbjct: 192 RLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQ 251

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           SGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL+ SQY SME+MKPPQ
Sbjct: 252 SGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLIASQYVSMEIMKPPQ 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684018|ref|NP_850125.1| inner membrane protein ALBINO3 [Arabidopsis thaliana] gi|330253079|gb|AEC08173.1| inner membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/291 (73%), Positives = 238/291 (81%), Gaps = 16/291 (5%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 294
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQ
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQ 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.829	0.558	0.696	2.1e-93
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.723	0.450	0.643	5e-76
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.411	0.573	0.379	4.9e-21
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.411	0.573	0.379	4.9e-21
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.344	0.372	0.412	2.1e-20
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.414	0.243	0.375	2.1e-19
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.414	0.243	0.375	2.1e-19
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.411	0.236	0.386	1e-18
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.411	0.236	0.386	1e-18
UNIPROTKB|Q746Q2	531	yidC "Membrane protein inserta	0.360	0.210	0.381	8.7e-17

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 184/264 (69%), Positives = 199/264 (75%)

Query:    33 NRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXX 90
             N +L   ST VR S  E              ++F+R ESLLY                  
Sbjct:    44 NNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDS 103

Query:    91 XXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLT 150
                    QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLT
Sbjct:   104 SAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLT 159

Query:   151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVW 210
             K+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVW
Sbjct:   160 KQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVW 219

Query:   211 IGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTA 270
             IGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT 
Sbjct:   220 IGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTV 279

Query:   271 AYXXXXXXXXXSQYASMELMKPPQ 294
             AY         SQY SME+MKPPQ
Sbjct:   280 AYLVLPVLLIASQYVSMEIMKPPQ 303

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 146/227 (64%), Positives = 173/227 (76%)

Query:    68 ESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
             E+LLY                         Q N  WF  I+  ME +LK+LKDG+  VHV
Sbjct:    63 ENLLYTIADAAVSSSETFESVAGTTTKTT-QSND-WFSGIANYMETILKVLKDGLSTVHV 120

Query:   128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
             PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct:   121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query:   188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
             LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct:   181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query:   248 GSGISWLLPFVDGHPPLGWHDTAAYXXXXXXXXXSQYASMELMKPPQ 294
             GSGISWL PF++GHPPLGW DT AY         SQY S+++M+  Q
Sbjct:   241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQ 287

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query:   130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLET 185
             SY   II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 239
              RLY++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 233 (87.1 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 233 (87.1 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q746Q2 yidC "Membrane protein insertase YidC" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 215 (80.7 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 45/118 (38%), Positives = 69/118 (58%)

Query:   100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLA 159
             N GWF  +++ +   LK   +         +YG AII++TVI+KV  +PLT    +S   
Sbjct:   320 NLGWFAMLAKPLLHSLKFFHNYTG------NYGIAIIIITVIIKVIFYPLTHSSYKSMKE 373

Query:   160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ LQPK++ ++++Y  ++E +      LY+   VNP+ GCLP L  IPV+  LY+AL
Sbjct:   374 MQKLQPKMQQLREKYKNDREAMNRAMMELYQTHKVNPVGGCLPMLVQIPVFFALYKAL 431

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.7388	0.8842	0.5952	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.7601	0.8971	0.6312	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	6e-49
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	1e-47
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	3e-37
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	8e-31
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	8e-31
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	1e-24
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	2e-23
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	3e-23
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	1e-22
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	4e-20
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	3e-18
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	3e-13
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	3e-12
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	3e-08

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  161 bits (409), Expect = 6e-49
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 30/173 (17%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT++V++   PLT KQ +S   MQ LQP+IK IQ++Y  + +++Q E  +LY
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLY 61

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSG 248
           ++ GVNPLAGCLP L  +P++I LY+AL N+A    L T GF WI  LS P         
Sbjct: 62  KEHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAPDP------- 114

Query: 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRT 301
                                  Y +LP+L  ++ +   +L        L+++
Sbjct: 115 ----------------------PYFILPILAGLTMFLQQKLSPSQDPPDLQQS 145

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  157 bits (400), Expect = 1e-47
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 34/172 (19%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT+IV++   PLT KQ +S   MQ LQPK+K IQ++Y  + +++Q E  +LY
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLY 60

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ GVNPL GCLP L  +P++I LYQ L       L    F WI  LS P          
Sbjct: 61  KEEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP---------- 108

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELM--KPPQMIQLK 299
                                 Y +LP+L+ V+ +   +L    PP   Q K
Sbjct: 109 --------------------DPYYILPILMGVTMFLQQKLSPSGPPDPAQQK 140

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  138 bits (351), Expect = 3e-37
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 51/208 (24%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L  L   +       ++G+AIILLT+IVK+  FPLT K   S   M+
Sbjct: 300 GWLWFITKPLFWLLDFLHSFVG------NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMK 353

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L    
Sbjct: 354 VLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL---- 409

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAY-------- 272
                              +I  R +        PF      +GW HD +A         
Sbjct: 410 -----------------LVSIELRHA--------PF------IGWIHDLSAPDPYFILHI 438

Query: 273 LVLPVLLVVSQYASMEL-MKPPQMIQLK 299
            +LP+L+ ++ +   +L   P   +Q K
Sbjct: 439 GLLPILMGITMFLQQKLNPTPTDPMQAK 466

Length = 521

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  115 bits (289), Expect = 8e-31
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 34/200 (17%)

Query: 104 FGFISEAMEFVLKILKDGIDAV--HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             +++ A     K +   + +V  +  +SYG AIIL+T+I+++   PL  KQ +S+L M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVV 281
             G+    F WI  L+ P                                  +LP+L   
Sbjct: 121 -TGINGVSFLWIKDLAKP------------------------------DITWILPILSGA 149

Query: 282 SQYASMELMKPPQMIQLKRT 301
           + Y S  LM      Q  + 
Sbjct: 150 TTYLSGYLMTKADSSQAGQM 169

Length = 223

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  117 bits (295), Expect = 8e-31
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 31/209 (14%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF  I   +  +L  +           ++G +IILLT+IV++  FPL++K   S   MQ
Sbjct: 86  GWFWNILAPLFPLLLFID-----SFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQ 140

Query: 162 NLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220
            LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L + 
Sbjct: 141 ELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200

Query: 221 ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLV 280
                      WI  LS P              LLP + G                V + 
Sbjct: 201 VELR-GAPFLGWITDLSLPDPD--------YILLLPILAG----------------VTMF 235

Query: 281 VSQYASMELMKPPQMIQLKRTHFLFSSFF 309
           + Q  S   +  PQ  Q K+  ++    F
Sbjct: 236 LQQKLSPRNLSTPQDPQQKKMMYIMPIIF 264

Length = 314

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  101 bits (253), Expect = 1e-24
 Identities = 36/95 (37%), Positives = 63/95 (66%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +I+ L ++++    PL  KQ++S   MQ +QPK+K IQ++Y G++ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEG 224
           ++ G NPL+ CLP L  +P++  LY+ L + A+ G
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG 135

Length = 329

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  100 bits (251), Expect = 2e-23
 Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 32/196 (16%)

Query: 102 GWFGFISE---AMEFVL-KILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVEST 157
           G+F FI+E   A+ F++ K  K       +  S+G +IILLTV +K+  +PL    + S 
Sbjct: 549 GFFSFITEPFAALLFIIMKFFK------FLTGSWGISIILLTVFLKLLLYPLNAWSIRSM 602

Query: 158 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L
Sbjct: 603 RRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLL 662

Query: 218 SNVANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
               +  LL    F   WI +L+ P  +         SW  P         W     + +
Sbjct: 663 K---SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHL 703

Query: 275 LPVLLVVSQYASMELM 290
           LP+LL V  +A  ++ 
Sbjct: 704 LPILLGVVMFAQQKIS 719

Length = 795

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score = 96.7 bits (241), Expect = 3e-23
 Identities = 31/88 (35%), Positives = 58/88 (65%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +++ L   ++   +    +Q+ +T  MQ LQP+IKA+Q++Y  +++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQAL 217
           ++ G NP+ GCLP LA IPV++GL+  L
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVL 118

Length = 304

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 43/125 (34%), Positives = 77/125 (61%), Gaps = 13/125 (10%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLET 185
           +YG AII++T+++++   PL  KQ +ST AMQ LQP+++ ++++Y       Q+++Q E 
Sbjct: 58  NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEM 117

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL---SNVANEGLL------TEGFFWIPSL 236
            +L+++ GVNPLAGCLP    +P+ I  Y A+   S ++    L       + ++ +P +
Sbjct: 118 MQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEISKHSFLWFDLGQADPYYILPIV 177

Query: 237 SGPTT 241
           +G TT
Sbjct: 178 AGITT 182

Length = 255

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score = 87.1 bits (216), Expect = 4e-20
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 85  SGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKV 144
           SG + +   D  +  +G +  +      F+++ +     A H+  SYG AII++T+I++ 
Sbjct: 21  SGCSNAAPIDAHS--DGFFDHYFVYPFSFLIQFV-----AHHIGGSYGIAIIIVTLIIRS 73

Query: 145 ATFPLTKKQVESTLAMQN----LQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVN 195
              PL   Q +S   MQ     ++P++  IQ +         Q+  Q E   LY+   +N
Sbjct: 74  LMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNIN 133

Query: 196 PLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 233
           PLA GCLP L  +P+    Y A+     E + +  F W 
Sbjct: 134 PLAMGCLPLLIQMPILSAFYYAIR--RTEEIASHSFLWF 170

Length = 256

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 16/120 (13%)

Query: 105 GFISEAMEFVLKILKD---GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GFIS  +  +L IL D   GI    VP SYG AI+ LT++++ A +PL+   + +   M+
Sbjct: 6   GFISNNV--MLPIL-DFFYGI----VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMK 57

Query: 162 NLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+  L
Sbjct: 58  IAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERIQL 183
           ++  ++  L + V+    P T +Q +S     +++PK KA+++ Y G       +E  Q 
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGL 225
           +   L ++ G NPLAGC+P L  IPV++GLYQ L  +A    GL
Sbjct: 91  Q-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGL 133

Length = 429

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG------NQERIQLETS 186
            AII++ +I+++ +F +T K   +    + LQ K   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 218
            LY++  ++P +  +    T+P++I +Y+ + 
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQ 226

Length = 357

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 19/145 (13%)

Query: 102 GW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQV-ESTL- 158
           G+ + F+   M + +        A ++   +G AII++T+IV++   PL   Q  ++T  
Sbjct: 35  GFIWNFLGAPMSYFIDYF-----ANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQ 89

Query: 159 --AMQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPV 209
              M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P 
Sbjct: 90  SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPF 149

Query: 210 WIGLYQALSNVANEGLLTEGFFWIP 234
           +  LY A      +G+ T  F  I 
Sbjct: 150 FSALYFAAQY--TKGVSTSTFLGID 172

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	99.98
KOG1239	372	consensus Inner membrane protein translocase invol	99.82
KOG1239	372	consensus Inner membrane protein translocase invol	98.36
COG1422	201	Predicted membrane protein [Function unknown]	97.71
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	90.23
TIGR03593	366	yidC_nterm membrane protein insertase, YidC/Oxa1 f	83.88

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.4e-44  Score=337.25  Aligned_cols=174  Identities=27%  Similarity=0.592  Sum_probs=157.3

Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544           97 TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (311)
Q Consensus        97 ~~~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~  176 (311)
                      .+.+|.|++++++|++++++++|..+     +.|||+|||++|+++|++++|++++|+|+++||+++|||+++||||||+
T Consensus        30 ~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~  104 (255)
T PRK02944         30 PKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS  104 (255)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC
Confidence            35678889999999999999999876     3589999999999999999999999999999999999999999999997


Q ss_pred             C----HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCcc
Q 021544          177 N----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS  252 (311)
Q Consensus       177 D----~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s  252 (311)
                      |    ++|+|+|+++|||||||||++||+|+++|+|||+++|+++|++.  ++.++||+|+ ||+.+|            
T Consensus       105 ~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-dLs~~D------------  169 (255)
T PRK02944        105 KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-DLGQAD------------  169 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-ccCcch------------
Confidence            4    56889999999999999999999999999999999999999885  4788999999 999998            


Q ss_pred             ccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCC--CCCcHHHHHHhHhhcc
Q 021544          253 WLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP--PQMIQLKRTHFLFSSF  308 (311)
Q Consensus       253 ~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~--~~~dp~q~~~~~~m~~  308 (311)
                                        ||++||+++++++++++++...  ++.+++|+.|+.+|++
T Consensus       170 ------------------p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~m~~i~p~  209 (255)
T PRK02944        170 ------------------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMMLWLMPI  209 (255)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence                              8899999999999999987654  3557777777777664

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=5.1e-44  Score=361.74  Aligned_cols=172  Identities=35%  Similarity=0.679  Sum_probs=160.5

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCH
Q 021544           99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ  178 (311)
Q Consensus        99 ~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~  178 (311)
                      -++||+.+++.|+.++|+++|..+      .|||+|||++|+++|++++|++++|+|+++||+++||||++||+|||+|+
T Consensus       297 ~~~G~~~~~~~pl~~~L~~i~~~~------g~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~  370 (521)
T PRK01318        297 VDYGWLWFITKPLFWLLDFLHSFV------GNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDP  370 (521)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhH
Confidence            478999999999999999999876      28999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCcchhhhhccCCCccccccc
Q 021544          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (311)
Q Consensus       179 e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl-W~~dLt~pD~i~~~~~~~~~s~~~p~  257 (311)
                      +++|+|+|+|||||||||++||+|+|+|+||||++|++++++.  ++.+++|+ ||+||+.+|                 
T Consensus       371 ~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~--el~~~~fl~Wi~DLs~~D-----------------  431 (521)
T PRK01318        371 QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSI--ELRHAPFIGWIHDLSAPD-----------------  431 (521)
T ss_pred             HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHH--HhccCchheeeccccccc-----------------
Confidence            9999999999999999999999999999999999999999976  47888998 999999999                 


Q ss_pred             cCCCCCCCCcchhhHHHH-----HHHHHHHHHHHhhhCCCCCCcHHHHHHhHhhccc
Q 021544          258 VDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFF  309 (311)
Q Consensus       258 ~~g~~~~gw~~~~py~IL-----PIL~~v~~~ls~k~~~~~~~dp~q~~~~~~m~~f  309 (311)
                                   ||+||     ||+++++++++++++..+ +||.|+++|++|+++
T Consensus       432 -------------p~~il~~~~lPil~~~~~~~~~~l~~~~-~~~~q~kim~~mpi~  474 (521)
T PRK01318        432 -------------PYFILHIGLLPILMGITMFLQQKLNPTP-TDPMQAKIMKFMPLI  474 (521)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHH
Confidence                         56777     999999999999987554 799999999988754

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.9e-43  Score=320.52  Aligned_cols=172  Identities=34%  Similarity=0.622  Sum_probs=150.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhccc--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHH
Q 021544          104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI  181 (311)
Q Consensus       104 ~~~i~~p~~~iL~~i~~~~~~~g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~  181 (311)
                      ++++.++++.+++++|+.++.++  .+.|||+||+++|+++|++++|++++|+|+++||+++|||+++||+|||+|++|+
T Consensus         2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~   81 (223)
T PRK00145          2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL   81 (223)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence            35778888888888888775432  3568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccccCCC
Q 021544          182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH  261 (311)
Q Consensus       182 q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~  261 (311)
                      |+|++++|||||+||++||+|+++|+|+|+++|+++|+++  ++.++||+|++||+.+|                     
T Consensus        82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~D---------------------  138 (223)
T PRK00145         82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKPD---------------------  138 (223)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCcc---------------------
Confidence            9999999999999999999999999999999999999986  57899999999999999                     


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhhhCCCC--CCcHHHHHHhHhhc
Q 021544          262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPP--QMIQLKRTHFLFSS  307 (311)
Q Consensus       262 ~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~--~~dp~q~~~~~~m~  307 (311)
                               ||++||+++++++|++++++.+.  ..+..++.++.+|+
T Consensus       139 ---------p~~iLPil~~~~~~l~~~~~~~~~~~~~~~~k~m~~~~~  177 (223)
T PRK00145        139 ---------ITWILPILSGATTYLSGYLMTKADSSQAGQMKTMNIGMS  177 (223)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence                     78999999999999999887653  12233344444444

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.5e-42  Score=357.88  Aligned_cols=189  Identities=32%  Similarity=0.551  Sum_probs=154.9

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHH
Q 021544          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (311)
Q Consensus       100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e  179 (311)
                      .+||+++|+.|+.+++.+++..++.+  ..|||+|||++|++||++++|++++|+|+++||+++||||++||||||+|++
T Consensus       547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q  624 (795)
T PRK01001        547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK  624 (795)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence            46999999999877665554444322  1389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCcchhhhhccCCCccccccc
Q 021544          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF  257 (311)
Q Consensus       180 ~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl--W~~dLt~pD~i~~~~~~~~~s~~~p~  257 (311)
                      |+|+|+|+|||||||||++||||+|+|+||||++|++++++.  ++.+++|+  |++||+.+|++.        +|..|.
T Consensus       625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLSapDplf--------~~~~~i  694 (795)
T PRK01001        625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLTAPDVLF--------SWETPI  694 (795)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhccCCCccc--------cccccc
Confidence            999999999999999999999999999999999999999875  46778898  999999999752        233221


Q ss_pred             cCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCCc------HHHHHHhHhhcc
Q 021544          258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMI------QLKRTHFLFSSF  308 (311)
Q Consensus       258 ~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~d------p~q~~~~~~m~~  308 (311)
                          +..|    .+++||||++++++|+++++++....|      .+|+.|+.+|+.
T Consensus       695 ----~FiG----d~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPI  743 (795)
T PRK01001        695 ----WFIG----NEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMAL  743 (795)
T ss_pred             ----cccc----cchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHH
Confidence                1111    267899999999999999987543222      234445566654

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.9e-41  Score=316.38  Aligned_cols=169  Identities=25%  Similarity=0.497  Sum_probs=150.3

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhchHHHHHHHHH
Q 021544           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR  173 (311)
Q Consensus        98 ~~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs----~~Km~~LqPem~~Iq~k  173 (311)
                      .++|+|++++++|+.++++++|+.+     +.+||+||+++|+++|++++|++++|+|+    ++||+++|||+++||+|
T Consensus        32 ~~~~~~~~~~~~p~~~ll~~l~~~~-----~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k  106 (256)
T PRK01622         32 HSDGFFDHYFVYPFSFLIQFVAHHI-----GGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK  106 (256)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence            3567888999999999999999876     25899999999999999999999999999    89999999999999999


Q ss_pred             hhc--CHH---HHHHHHHHHHHHhCCCCCc-chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhcc
Q 021544          174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (311)
Q Consensus       174 yk~--D~e---~~q~E~~~LyKk~gvnPl~-gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~  247 (311)
                      ||+  |++   ++|+|++++||||||||++ ||+|+++|+|||+++|+++|++.  ++.++||+|+ ||+.+|       
T Consensus       107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D-------  176 (256)
T PRK01622        107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD-------  176 (256)
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence            997  433   5889999999999999999 99999999999999999999974  6889999999 999876       


Q ss_pred             CCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCCcHHHHHHhHhh
Q 021544          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFS  306 (311)
Q Consensus       248 ~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~dp~q~~~~~~m  306 (311)
                                               +|||++++++++++++++++...+++|+++++.|
T Consensus       177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m  210 (256)
T PRK01622        177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQ  210 (256)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence                                     5999999999999999887555566665554443

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=7.4e-41  Score=296.96  Aligned_cols=147  Identities=39%  Similarity=0.716  Sum_probs=134.5

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 021544          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (311)
Q Consensus       130 ~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPI  209 (311)
                      |||+||+++|+++|++++|++++|+|+++||+++|||++++|||||+|++|+++|++++|||||+||++||+|+++|+|+
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q 021544          210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL  289 (311)
Q Consensus       210 fi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~  289 (311)
                      |+++|+++|++.  ++.++||+||+||+.+|                              ||++||+++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~  128 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL  128 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence            999999999975  68899999999999998                              8899999999999999998


Q ss_pred             CCCCCCcHHHHH-HhHhhcc
Q 021544          290 MKPPQMIQLKRT-HFLFSSF  308 (311)
Q Consensus       290 ~~~~~~dp~q~~-~~~~m~~  308 (311)
                      +.....++.|.+ |+.+|+.
T Consensus       129 ~~~~~~~~~~~k~m~~~~p~  148 (181)
T TIGR03592       129 SPSGPPDPAQQKIMMYIMPL  148 (181)
T ss_pred             cCCCCCCHHHHHHHHHHHHH
Confidence            766544554444 4445554

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=5.3e-39  Score=306.85  Aligned_cols=168  Identities=26%  Similarity=0.448  Sum_probs=142.2

Q ss_pred             CCc-hHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhchHHHHHHHHHhh
Q 021544          101 GGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRYA  175 (311)
Q Consensus       101 gGw-~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs----~~Km~~LqPem~~Iq~kyk  175 (311)
                      +|| |+++++|+.++++++|+.+     +.+||+|||++|++||++++|++++|+++    ++||+++|||+++||+|||
T Consensus        34 ~g~~~~~l~~p~~~~l~~i~~~~-----g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk  108 (307)
T PRK02463         34 TGFIWNFLGAPMSYFIDYFANNL-----GLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLK  108 (307)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence            565 5799999999999999876     25899999999999999999999988865    6899999999999999999


Q ss_pred             cC-----HHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccC
Q 021544          176 GN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG  248 (311)
Q Consensus       176 ~D-----~e~~q~E~~~LyKk~gvnPl~--gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~  248 (311)
                      ++     ++++|+|++++|||||+||++  ||+|+|+|+|||+++|++++..  +++.+++|+|+ ||+.||        
T Consensus       109 ~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~--------  177 (307)
T PRK02463        109 NATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS--------  177 (307)
T ss_pred             cCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh--------
Confidence            73     235789999999999999998  8999999999999999999975  57889999999 898655        


Q ss_pred             CCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCC---cHHHHHHhHhhcc
Q 021544          249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQM---IQLKRTHFLFSSF  308 (311)
Q Consensus       249 ~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~---dp~q~~~~~~m~~  308 (311)
                                              ++|||+.+++++++++++.....   .++|+.||.+|+.
T Consensus       178 ------------------------~iLpii~~v~~~~q~~~~~~~~~~~q~~~mk~m~~~~Pi  216 (307)
T PRK02463        178 ------------------------LVLTAIIGVLYFFQSWLSMMGVPEEQREQMKAMMYMMPI  216 (307)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Confidence                                    68999999999999987754322   2233445555543

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.2e-39  Score=306.96  Aligned_cols=174  Identities=34%  Similarity=0.597  Sum_probs=158.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhh-cC
Q 021544           99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GN  177 (311)
Q Consensus        99 ~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk-~D  177 (311)
                      .++||+.++..++...+++++.+.   |  .|||++||++|++||++++|++.++.++++||+++|||+++|||||| +|
T Consensus        83 ~~~~~f~~~~~~~~~~~~~~~~~~---g--~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~  157 (314)
T COG0706          83 SDYGWFWNILAPLFPLLLFIDSFS---G--LNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTD  157 (314)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc---C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCC
Confidence            368999999988899999987654   2  38999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCcchhhhhccCCCcccccc
Q 021544          178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLP  256 (311)
Q Consensus       178 ~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl-W~~dLt~pD~i~~~~~~~~~s~~~p  256 (311)
                      ++++|+|+++|||||||||++||+|+++|+|||+++|+++++..  .+..++|+ |++||+.+|                
T Consensus       158 ~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~~~d----------------  219 (314)
T COG0706         158 KQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLSLPD----------------  219 (314)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhcccCCC----------------
Confidence            99999999999999999999999999999999999999999875  46777777 999999998                


Q ss_pred             ccCCCCCCCCcchhhHH--HHHHHHHHHHHHHhhhCCC---CCCcHHHHHHhHhhccc
Q 021544          257 FVDGHPPLGWHDTAAYL--VLPVLLVVSQYASMELMKP---PQMIQLKRTHFLFSSFF  309 (311)
Q Consensus       257 ~~~g~~~~gw~~~~py~--ILPIL~~v~~~ls~k~~~~---~~~dp~q~~~~~~m~~f  309 (311)
                                    |++  ++||++++++|++++++..   .+.|++|++|+.+|+.+
T Consensus       220 --------------p~~~~~~pii~gv~~f~q~~ls~~~~~~~q~~~~~~~~~impi~  263 (314)
T COG0706         220 --------------PDYILLLPILAGVTMFLQQKLSPRNLSTPQDPQQKKMMYIMPII  263 (314)
T ss_pred             --------------CchhhHHHHHHHHHHHHHHHhccccCCcccCHHHHHHHHHHHHH
Confidence                          444  5699999999999999887   47899999999999853

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=6e-39  Score=311.52  Aligned_cols=166  Identities=20%  Similarity=0.365  Sum_probs=140.9

Q ss_pred             cCC-chHHHHHHHHHHHHHHH--HhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544          100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (311)
Q Consensus       100 ~gG-w~~~i~~p~~~iL~~i~--~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~  176 (311)
                      ++| |++++++|+.+++.++|  ...+ ...+++||+|||++|+++|++++|++++|+++++||+++|||+++||+|||+
T Consensus       100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~  178 (357)
T PRK02201        100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD  178 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            455 77999999999999997  2221 1235689999999999999999999999999999999999999999999997


Q ss_pred             C------HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCC
Q 021544          177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (311)
Q Consensus       177 D------~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~  250 (311)
                      |      ++++|+|+++|||||||||++||+|+|+|+|||+++|+++|.+.  ++....|+|+ ||+.+|+..       
T Consensus       179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi-dLs~~~~~~-------  248 (357)
T PRK02201        179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI-DLSATSWQE-------  248 (357)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc-ccCCCChhh-------
Confidence            6      67899999999999999999999999999999999999999875  5778899999 999987321       


Q ss_pred             ccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhC
Q 021544          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELM  290 (311)
Q Consensus       251 ~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~  290 (311)
                         +   +        .+..+|++++++++++++++++++
T Consensus       249 ---~---~--------~~~~~~l~l~ii~~~~~~ls~~l~  274 (357)
T PRK02201        249 ---I---F--------AGNWIYLPILIIVVPVQALSQLLP  274 (357)
T ss_pred             ---h---c--------cccchHHHHHHHHHHHHHHHHHHH
Confidence               0   0        111267788888888888887654

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=1.2e-38  Score=284.14  Aligned_cols=137  Identities=44%  Similarity=0.842  Sum_probs=129.5

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 021544          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (311)
Q Consensus       130 ~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPI  209 (311)
                      |||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++||||||||+++|+|+++|+||
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi   81 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI   81 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh-hccccCccccccCCCCcchhhhhccCCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q 021544          210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME  288 (311)
Q Consensus       210 fi~lf~~Lr~ma~-~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k  288 (311)
                      |+++|+++|++++ +++.++||+|++||+.+|+.                     .    ..||++||++++++++++++
T Consensus        82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~---------------------~----~~p~~iLPil~~~~~~~~~~  136 (198)
T PF02096_consen   82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT---------------------M----GLPYFILPILAGASMFLNQE  136 (198)
T ss_pred             HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc---------------------c----hhHHHHHHHHHHHHHHHHHH
Confidence            9999999999986 67889999999999999942                     1    12899999999999999999


Q ss_pred             hCC
Q 021544          289 LMK  291 (311)
Q Consensus       289 ~~~  291 (311)
                      ++.
T Consensus       137 ~~~  139 (198)
T PF02096_consen  137 LSM  139 (198)
T ss_pred             HHH
Confidence            864

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=9.9e-38  Score=300.40  Aligned_cols=122  Identities=30%  Similarity=0.605  Sum_probs=110.8

Q ss_pred             cCCchHHHHHHHHHHH----HHHHHhhhcc-c--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHH
Q 021544          100 NGGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ  172 (311)
Q Consensus       100 ~gGw~~~i~~p~~~iL----~~i~~~~~~~-g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~  172 (311)
                      -++||++|++|++|++    .++|..++.+ |  .+++||+|||++|+++|++++|++++|+|+++||+++|||+++||+
T Consensus         4 ~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~   83 (329)
T PRK01315          4 LADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQE   83 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3679999999988887    4456655432 2  2468999999999999999999999999999999999999999999


Q ss_pred             HhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 021544          173 RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA  221 (311)
Q Consensus       173 kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma  221 (311)
                      |||+|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++
T Consensus        84 kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~  132 (329)
T PRK01315         84 KYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAA  132 (329)
T ss_pred             HHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999865

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.5e-37  Score=292.62  Aligned_cols=119  Identities=29%  Similarity=0.607  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhc-cc--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHH
Q 021544          104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER  180 (311)
Q Consensus       104 ~~~i~~p~~~iL~~i~~~~~~-~g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~  180 (311)
                      ++++.+|+.+++.++|..+.. +|  .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|+++
T Consensus         2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~   81 (304)
T PRK03449          2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK   81 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence            567888999999999987642 12  356899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 021544          181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN  222 (311)
Q Consensus       181 ~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~  222 (311)
                      +++|+++|||||||||++||+|+|+|+|||+++|+++|++..
T Consensus        82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~  123 (304)
T PRK03449         82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNR  123 (304)
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999854

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=9.3e-34  Score=280.40  Aligned_cols=137  Identities=28%  Similarity=0.435  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhc-ccC--CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcC---
Q 021544          104 FGFISEAMEFVLKILKDGIDA-VHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN---  177 (311)
Q Consensus       104 ~~~i~~p~~~iL~~i~~~~~~-~gl--~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D---  177 (311)
                      +++|++|+++++.++|.+++. +|.  +++||++|+++|++||++++|++++|+++++||+.+|||+++||+|||++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            578999999999999998763 453  46799999999999999999999999999999999999999999999974   


Q ss_pred             --HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCcc
Q 021544          178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPT  240 (311)
Q Consensus       178 --~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~--~~l~~~gflW~~dLt~pD  240 (311)
                        ++++++|+++|||||||||+.||+|+|+|+|||+++|++||+|+.  +|+.+..+.|+--|+.+|
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~  148 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEE  148 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHH
Confidence              357899999999999999999999999999999999999999974  355444445555566555

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=99.98  E-value=9e-32  Score=257.92  Aligned_cols=114  Identities=32%  Similarity=0.564  Sum_probs=107.1

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHH----HHHHHhh
Q 021544          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA  175 (311)
Q Consensus       100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~----~Iq~kyk  175 (311)
                      |+||..+..+++.++++++|..+      .+||+|||++|+++|++++|++++|+|+++||+.+||||+    +||+|||
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~v------gswGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK   75 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIV------PSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK   75 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence            57897777789999999999865      2899999999999999999999999999999999999985    7999999


Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 021544          176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV  220 (311)
Q Consensus       176 ~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~m  220 (311)
                      +|++++|+|+++|||||| ||++||+|+|+|+|||+++|+++|+.
T Consensus        76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~s  119 (375)
T PRK02654         76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGS  119 (375)
T ss_pred             CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999 99999999999999999999999983

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.1e-19  Score=178.19  Aligned_cols=164  Identities=18%  Similarity=0.314  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcC------HHHH
Q 021544          108 SEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERI  181 (311)
Q Consensus       108 ~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D------~e~~  181 (311)
                      +..+++.|+.+|+..     +.+||.+|+..|+.+|.+++|+.++++|+.+|+.+++|||+++.++.+.-      ....
T Consensus        84 ~~~lq~~l~~~h~~~-----g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~  158 (372)
T KOG1239|consen   84 VATLQNELERLHVYS-----GLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSW  158 (372)
T ss_pred             hhHHHHHHHHHHHHh-----CCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHH
Confidence            457889999999987     35899999999999999999999999999999999999999999998751      2356


Q ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCcchhhhhccCCCccccccccC
Q 021544          182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVD  259 (311)
Q Consensus       182 q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~--~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~  259 (311)
                      |+|++++||+||++| +...-+++|.|+|++.|.+||.|+.  ++..++|++||+||+.+|                   
T Consensus       159 q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d-------------------  218 (372)
T KOG1239|consen  159 QEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD-------------------  218 (372)
T ss_pred             HHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-------------------
Confidence            779999999999999 9888888999999999999999985  477888999999999998                   


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCC-----CCcHHHHHHhHhhc
Q 021544          260 GHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPP-----QMIQLKRTHFLFSS  307 (311)
Q Consensus       260 g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~-----~~dp~q~~~~~~m~  307 (311)
                                 |++++|+++..++...+++....     ..-+.++.++.+.+
T Consensus       219 -----------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (372)
T KOG1239|consen  219 -----------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILP  260 (372)
T ss_pred             -----------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhh
Confidence                       78999999999888888766431     34556666655543

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=2.2e-07  Score=91.78  Aligned_cols=193  Identities=26%  Similarity=0.283  Sum_probs=170.2

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHH
Q 021544          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (311)
Q Consensus       100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e  179 (311)
                      .+.|+..+....+..+..++.....++.+..++.++.+.|+++.+...|+...+..+..-++..+|....+...+...+.
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            57888888888888888888877777777889999999999999999999998999999999999999999988888765


Q ss_pred             --HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccc
Q 021544          180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF  257 (311)
Q Consensus       180 --~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~  257 (311)
                        .+|.++.++|+-.|++.|.+|+...+-++..+..|.+.++ .+....+.++.|++.+...-...+.....++.|..+.
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999986 5555667889999988887777777777888999999


Q ss_pred             cCCCCCCCCc-chhhHHHHHHHHHHHHHHHhhhCCCC
Q 021544          258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPP  293 (311)
Q Consensus       258 ~~g~~~~gw~-~~~py~ILPIL~~v~~~ls~k~~~~~  293 (311)
                      .+++..-||. +...+.+++....+++|+..+.|..+
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~  199 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVP  199 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhcc
Confidence            8888888988 88888999999999999999988743

>COG1422 Predicted membrane protein [Function unknown]

Probab=97.71  E-value=0.00021  Score=65.29  Aligned_cols=92  Identities=15%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHhCCCCCcch
Q 021544          129 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGC  200 (311)
Q Consensus       129 ~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~-----D~---e~~q~E~~~LyKk~gvnPl~gc  200 (311)
                      .+.-+.|+++.+++=+. +-+.-+-....+||+++|.+++|.||++++     |.   +|+|+|+++...+..--.-..+
T Consensus        44 ~~p~lvilV~avi~gl~-~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf  122 (201)
T COG1422          44 LPPHLVILVAAVITGLY-ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF  122 (201)
T ss_pred             cccHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45666777777777644 223334456789999999999999999875     43   3666666665554432222356


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 021544          201 LPTLATIPVWIGLYQALSNVA  221 (311)
Q Consensus       201 LP~LiQiPIfi~lf~~Lr~ma  221 (311)
                      -||+.++++.|-+|.-++...
T Consensus       123 kPM~~~~v~tI~~F~Wl~~~~  143 (201)
T COG1422         123 KPMLYISVLTIPFFAWLRWFV  143 (201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            799988888888888888765

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=90.23  E-value=1.4  Score=38.52  Aligned_cols=66  Identities=11%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             HHHHHHHHhchHHHHHHHHHhhc-CHHHHHHHHHHHHHHhCCCCCcchHHHH----HHHHHHHHHHHHHHh
Q 021544          154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLETSRLYRQAGVNPLAGCLPTL----ATIPVWIGLYQALSN  219 (311)
Q Consensus       154 ~rs~~Km~~LqPem~~Iq~kyk~-D~e~~q~E~~~LyKk~gvnPl~gcLP~L----iQiPIfi~lf~~Lr~  219 (311)
                      -+.++++++++-+.++++++... ..++++++.+++.++..--....+-|++    +|+|+|..++....+
T Consensus        43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g  113 (168)
T PF01956_consen   43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFSG  113 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence            44455666666666666664432 2334444444333332211112233444    455555555544443

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain

Probab=83.88  E-value=0.81  Score=44.69  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=21.5

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhh
Q 021544          100 NGGWFGFISEAMEFVLKILKDGI  122 (311)
Q Consensus       100 ~gGw~~~i~~p~~~iL~~i~~~~  122 (311)
                      ++||++||+.|+-|+|+++|.++
T Consensus       343 DyGw~~~iakPlf~lL~~~~~~v  365 (366)
T TIGR03593       343 DYGWLWFIAKPLFWLLDFFHSLV  365 (366)
T ss_pred             eeecHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999865

Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00