Citrus Sinensis ID: 021549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccHHHHccccccccccccccccEccccccccccccccccccccccccHHHHHHccHcHHHcccHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHccEEEEcEEEEccccccccccccccccEEccccccEEEEEcccccccccEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHcccccccHHccHEEHHHHHHHHHHHHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
msndyltrcssiyhqvgrplsqkrrcgsaiyrnfstwsaslispvaslvvrppsslAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAlgfwkgkrrselwhEKVFSLETQVIENSKRCAMEWGVLNEAAAIDryksitghdvsslgfAVHAEEQldwlgaspdgllgcfpgggilevkcpynkgkpeialpwstvpfyympqvqgqMEILDRewvdlycwtpngstiFRVIRRRDYWELIHGILQEfwwenvvpAKEALSMGReelatsydptsthrlTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Flexible Loop (DISEMBL)
msndyltrcssiyhqvgrplsqkrrCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFalrrdklttstfstalgfwkgkrrselWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGIlqefwwenVVPAKEALSMGREELAtsydptsthrLTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Low Complexity Region (SEG)
MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVkslklaseskllckEIAGHVEFFR
Disordered region (IsUnstruct)
****YLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSM********Y**TSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEF**
Disordered Region (DISOPRED)
********CSSI*******************************************************LQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSM**EE***SYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHV**F*
Disordered Region (DISEMBL)
MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Disordered Region (DISPRO)
****YLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
P0CAF2	345	Uncharacterized protein D	yes	no	0.446	0.402	0.248	0.0001
P0CAF1	345	Uncharacterized protein D	yes	no	0.446	0.402	0.243	0.0003

>sp|P0CAF2|VF345_ASFWA Uncharacterized protein D345L OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=War-119 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 50/189 (26%)

Query: 56  LAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVI 115
           +    C+ ++   QRSD W A RR ++  S  ++ LG    K       EK    +    
Sbjct: 1   METFVCLFKDSPQQRSDAWHAARRTQVGGSDLASVLGLNPYKSYYITLAEKANLFK---- 56

Query: 116 ENSKRCAMEWGVLNEAAAIDRYK-----SITGHDV----SSLGFAVHAEEQLDWLGASPD 166
           +N  R A  WG L E  + D  +     ++ G ++    + LG+  H+         SPD
Sbjct: 57  KNLNRAACSWGTLFERVSKDLLELFCQTTVIGDNIHIDGTYLGYPGHSN--------SPD 108

Query: 167 GL----LG---------------CFPGGG----ILEVKCPYNKGKPEIALPWSTVPFYYM 203
           G     LG               C+        ++E+K PYN+         ++VP YYM
Sbjct: 109 GFCYLTLGYTQQSWEIKTIFNNVCYEATKRIPVLVEIKSPYNRKIK------NSVPSYYM 162

Query: 204 PQVQGQMEI 212
           PQ+Q  + +
Sbjct: 163 PQIQSGLAL 171

Sus scrofa (taxid: 9823)

>sp|P0CAF1|VF345_ASFP4 Uncharacterized protein D345L OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-121 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 50/189 (26%)

Query: 56  LAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVI 115
           +    C+ ++   QRSD W A+R  ++  S  ++ LG    K       EK    +    
Sbjct: 1   METFVCLFKDSPQQRSDAWHAVRHTQVGGSDLASILGLNPYKSYYITLAEKANLFK---- 56

Query: 116 ENSKRCAMEWGVLNEAAAIDRYK-----SITGHDV----SSLGFAVHAEEQLDWLGASPD 166
           +N  R A  WG L E  + D  +     ++ G ++    + LG+  H+         SPD
Sbjct: 57  KNLNRAACSWGTLFERVSKDLLELFCQTTVIGDNIHIDGTYLGYPGHSN--------SPD 108

Query: 167 GL----LG---------------CFPGGG----ILEVKCPYNKGKPEIALPWSTVPFYYM 203
           G     LG               C+        ++E+K PYN+         ++VP YYM
Sbjct: 109 GFCYLTLGYTQQSWEIKTIFNNVCYEATKRIPVLVEIKSPYNRKIK------NSVPSYYM 162

Query: 204 PQVQGQMEI 212
           PQ+Q  + +
Sbjct: 163 PQIQSGLAL 171

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
255547824	310	conserved hypothetical protein [Ricinus	0.996	1.0	0.723	1e-134
224107669	335	predicted protein [Populus trichocarpa]	0.996	0.925	0.713	1e-129
359473702	324	PREDICTED: uncharacterized protein LOC10	1.0	0.959	0.663	1e-123
343171986	311	restriction endonuclease, type II-like p	0.993	0.993	0.654	1e-116
343171988	311	restriction endonuclease, type II-like p	0.993	0.993	0.651	1e-116
449450391	379	PREDICTED: uncharacterized protein LOC10	0.900	0.738	0.725	1e-115
449494480	379	PREDICTED: uncharacterized protein LOC10	0.900	0.738	0.725	1e-115
449450393	313	PREDICTED: uncharacterized protein LOC10	0.900	0.894	0.725	1e-114
356525128	316	PREDICTED: uncharacterized protein LOC10	0.974	0.958	0.626	1e-111
255635157	316	unknown [Glycine max]	0.974	0.958	0.626	1e-111

>gi|255547824|ref|XP_002514969.1| conserved hypothetical protein [Ricinus communis] gi|223546020|gb|EEF47523.1| conserved hypothetical protein [Ricinus communis]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/311 (72%), Positives = 261/311 (83%), Gaps = 1/311 (0%)

Query: 1   MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVA 60
           M+N Y++R  S +H+ GRPL   R       R  ST++A L+SP ASL+VRPPSSL + A
Sbjct: 1   MTNAYISRYHSFHHKAGRPLFTGRTYEGGPVRTISTYAAELVSPTASLIVRPPSSLVLAA 60

Query: 61  CVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKR 120
           C TQ++  QRS+EWFALRR+KLT STF+TALGFWKG RR ELW EKVF+ ETQ+I  SKR
Sbjct: 61  CATQSNAPQRSEEWFALRREKLTASTFNTALGFWKGNRRPELWSEKVFASETQIIGTSKR 120

Query: 121 CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEV 180
            AMEWGVLNEAAA+D YKSITG +VS LGFAVH+ EQL+WLGASPDGLLGCFP GGILEV
Sbjct: 121 -AMEWGVLNEAAAVDSYKSITGREVSHLGFAVHSAEQLEWLGASPDGLLGCFPEGGILEV 179

Query: 181 KCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYW 240
           KCPYNKGKPE+ LPWST+PFYYMPQVQGQ+EI++REW DLYCWTPNGSTIFRV R R YW
Sbjct: 180 KCPYNKGKPEVGLPWSTMPFYYMPQVQGQLEIMNREWADLYCWTPNGSTIFRVYRDRGYW 239

Query: 241 ELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLC 300
           ELI GILQEFWWENV+PA+EAL +G+EE A +Y PTSTHR TGL I KS+KLAS+SKLLC
Sbjct: 240 ELIQGILQEFWWENVIPAREALLLGKEEEAKAYKPTSTHRQTGLVIFKSVKLASDSKLLC 299

Query: 301 KEIAGHVEFFR 311
           +EIAGH+EF+R
Sbjct: 300 REIAGHIEFYR 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107669|ref|XP_002314555.1| predicted protein [Populus trichocarpa] gi|222863595|gb|EEF00726.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/318 (71%), Positives = 256/318 (80%), Gaps = 8/318 (2%)

Query: 1   MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVA 60
           MS   LT   SI+      LS ++R G+  YR F T S  LIS     +VRPPSSL + A
Sbjct: 18  MSKACLTMFPSIHQNKVASLSPRKRHGTGSYRIFYTCSKPLISRTVPPIVRPPSSLVLAA 77

Query: 61  CVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKR 120
           CVT +D  QRS+EWFALRRD+LTTSTFSTA+GFWKGKRR ELWHEKVF  ETQ +E S  
Sbjct: 78  CVTGSDAPQRSEEWFALRRDRLTTSTFSTAMGFWKGKRRPELWHEKVFGSETQTLEASAN 137

Query: 121 CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLG--------CF 172
            AM+WGVLNEAAAI+RYK+IT  +VSSLGFA+H+EEQ DWLGASPDGLLG        CF
Sbjct: 138 SAMQWGVLNEAAAINRYKNITSREVSSLGFAIHSEEQFDWLGASPDGLLGASPDGLLGCF 197

Query: 173 PGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFR 232
           PGGGILEVKCPYNKGKPE  LPWST+PFYY+PQVQGQ+EI+DREW DLYCWTPNGSTIFR
Sbjct: 198 PGGGILEVKCPYNKGKPEKGLPWSTMPFYYVPQVQGQLEIMDREWADLYCWTPNGSTIFR 257

Query: 233 VIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKL 292
           V R R YWE+IHGIL+EFWWENV+PA+EAL +GREE A SY P STH+ TGLAIVKSLKL
Sbjct: 258 VCRDRGYWEIIHGILREFWWENVIPAREALLIGREEEAKSYMPASTHKQTGLAIVKSLKL 317

Query: 293 ASESKLLCKEIAGHVEFF 310
           A+ESKLLC+EIAGHVEFF
Sbjct: 318 ATESKLLCREIAGHVEFF 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473702|ref|XP_002266643.2| PREDICTED: uncharacterized protein LOC100254469 isoform 1 [Vitis vinifera] gi|359473704|ref|XP_003631349.1| PREDICTED: uncharacterized protein LOC100254469 isoform 2 [Vitis vinifera]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/324 (66%), Positives = 253/324 (78%), Gaps = 13/324 (4%)

Query: 1   MSNDYLTRCSSIYHQV------------GRPLSQKRRCGSAIYRNFSTWSASLISPVASL 48
           MSN Y+T   +I+H+             G P    +  G+ I+R FST ++ L S    L
Sbjct: 1   MSNAYITGFRTIHHKAASPFPSCKLHGNGIPFPSCKLHGNGIFRTFSTCTSPLNSSTPPL 60

Query: 49  VVRPPSSLAVVAC-VTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKV 107
            +R PSSL + +  +  +++ QRS+EWFALRRDKLTTSTFSTALGFWKG RR ELWHEKV
Sbjct: 61  SIRSPSSLVLASSQIVPSNLPQRSEEWFALRRDKLTTSTFSTALGFWKGNRRHELWHEKV 120

Query: 108 FSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDG 167
           F+ + Q IE S+  AMEWG+LNEAAAI++YKSITG DVS LGFA+H+EEQ +WLGASPDG
Sbjct: 121 FASDVQSIEASRNSAMEWGMLNEAAAIEQYKSITGRDVSLLGFAIHSEEQFNWLGASPDG 180

Query: 168 LLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNG 227
           LLGCFPGGGILEVKCPYNKGKPE+ LPWST+PFYYMPQVQGQMEI+ REWVDLYCWTPNG
Sbjct: 181 LLGCFPGGGILEVKCPYNKGKPEMGLPWSTMPFYYMPQVQGQMEIMGREWVDLYCWTPNG 240

Query: 228 STIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIV 287
           STIF V R R YWELIHGIL EFWWE+VVPA+EAL +G+EE A  Y P STH+ TGL I 
Sbjct: 241 STIFHVCRDRSYWELIHGILHEFWWESVVPAREALLLGKEEEARLYKPASTHKQTGLVIS 300

Query: 288 KSLKLASESKLLCKEIAGHVEFFR 311
           KS+KLA+ESKL C+EIA H+EFFR
Sbjct: 301 KSIKLAAESKLSCREIASHIEFFR 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171986|gb|AEL98697.1| restriction endonuclease, type II-like protein, partial [Silene latifolia]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/310 (65%), Positives = 245/310 (79%), Gaps = 1/310 (0%)

Query: 1   MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVA 60
           MSN Y++R   ++H V  PL  +    S +++ FS+ S+  I+P   L +   S+L++ A
Sbjct: 3   MSNAYMSRLCIVHHSVATPLPPRCNLVSQLFKRFSSCSSLAIAPACPLAISH-SALSLTA 61

Query: 61  CVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKR 120
            +T     QRS+EWFALR+DKLTTSTF TALGFWKG RR+ELW EKVF L+ +  E S  
Sbjct: 62  QLTAAGTTQRSEEWFALRKDKLTTSTFGTALGFWKGTRRAELWSEKVFPLDPKPPEASSM 121

Query: 121 CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEV 180
            AMEWGVLNEA AI++YKSITG DVS LGFAVH+E++ DWLGASPDGLL C    GILEV
Sbjct: 122 RAMEWGVLNEAVAIEKYKSITGRDVSFLGFAVHSEQKFDWLGASPDGLLSCSQELGILEV 181

Query: 181 KCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYW 240
           KCPYNKGKP +ALPWST+PFYYMPQVQGQ+EI+DR+WVDLYCWTPNGSTIFRV R R YW
Sbjct: 182 KCPYNKGKPALALPWSTMPFYYMPQVQGQLEIMDRDWVDLYCWTPNGSTIFRVYRERGYW 241

Query: 241 ELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLC 300
           EL+H IL+EFWWENV+PA+EAL +G EE A+ Y PTS H+LTGL I KS+KLA+E+KLLC
Sbjct: 242 ELMHEILREFWWENVIPAREALLVGGEEAASFYKPTSKHKLTGLMIFKSIKLAAEAKLLC 301

Query: 301 KEIAGHVEFF 310
           KEIAGHVEF+
Sbjct: 302 KEIAGHVEFY 311

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171988|gb|AEL98698.1| restriction endonuclease, type II-like protein, partial [Silene latifolia]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/310 (65%), Positives = 244/310 (78%), Gaps = 1/310 (0%)

Query: 1   MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVA 60
           MSN Y++R   ++H    PL  +    S ++++FS+ S+  I+P   L +   S+L++ A
Sbjct: 3   MSNAYMSRLCIVHHSFATPLPPRCNLVSQLFKSFSSCSSLAIAPACPLAISH-SALSLTA 61

Query: 61  CVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKR 120
            +T     QRS+EWFALR+DKLTTSTF TALGFWKG RR+ELW EKVF L+ +  E S  
Sbjct: 62  QLTAAGTTQRSEEWFALRKDKLTTSTFGTALGFWKGTRRAELWSEKVFPLDPKPPEASSM 121

Query: 121 CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEV 180
            AMEWGVLNEA AI++YKSITG DVS LGFAVH+E++ DWLGASPDGLL C    GILEV
Sbjct: 122 RAMEWGVLNEAVAIEKYKSITGRDVSFLGFAVHSEQKFDWLGASPDGLLSCSQELGILEV 181

Query: 181 KCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYW 240
           KCPYNKGKP +ALPWST+PFYYMPQVQGQ+EI+DR+WVDLYCWTPNGSTIFRV R R YW
Sbjct: 182 KCPYNKGKPALALPWSTMPFYYMPQVQGQLEIMDRDWVDLYCWTPNGSTIFRVHRERGYW 241

Query: 241 ELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLC 300
           EL+H IL+EFWWENV+PA+EAL +G EE A  Y PTS H+LTGL I KS+KLA+E+KLLC
Sbjct: 242 ELMHEILREFWWENVIPAREALLVGGEEAANFYKPTSKHKLTGLMIYKSIKLAAEAKLLC 301

Query: 301 KEIAGHVEFF 310
           KEIAGHVEF+
Sbjct: 302 KEIAGHVEFY 311

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450391|ref|XP_004142946.1| PREDICTED: uncharacterized protein LOC101223120 isoform 1 [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 223/280 (79%)

Query: 32  RNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAL 91
           R FST  +   S    LV+  PS L + +   Q+   QRS+EWFALRRDKLTTSTFSTAL
Sbjct: 100 RPFSTCVSPSSSTKNPLVIWLPSPLVLASQANQSVAPQRSEEWFALRRDKLTTSTFSTAL 159

Query: 92  GFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFA 151
           GFWKG RR ELWHEKVF  E Q  E  ++ AMEWGVLNE  AIDRYK ITG DVS LGFA
Sbjct: 160 GFWKGNRRIELWHEKVFPSEIQKTEAPQQNAMEWGVLNEVNAIDRYKGITGRDVSLLGFA 219

Query: 152 VHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQME 211
            H+E+Q DWLGASPDGLL CF GGGILEVKCPYNKGKPE  LPWST+PFYYMPQVQGQME
Sbjct: 220 THSEQQFDWLGASPDGLLECFQGGGILEVKCPYNKGKPEKGLPWSTIPFYYMPQVQGQME 279

Query: 212 ILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELAT 271
           I+ REW DLYCWTPNGSTIFRV R R YW+LI  IL+EFWWENVVPAKEAL +G EE A 
Sbjct: 280 IMGREWADLYCWTPNGSTIFRVCRERGYWDLIREILREFWWENVVPAKEALLLGSEEKAK 339

Query: 272 SYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR 311
           SY PTSTH+ TGLAI KS+KLASE+KL C+EIAGHVEF+R
Sbjct: 340 SYKPTSTHKQTGLAIAKSIKLASEAKLFCREIAGHVEFYR 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494480|ref|XP_004159557.1| PREDICTED: uncharacterized protein LOC101224925 isoform 1 [Cucumis sativus]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 223/280 (79%)

Query: 32  RNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAL 91
           R FST  +   S    LV+  PS L + +   Q+   QRS+EWFALRRDKLTTSTFSTAL
Sbjct: 100 RPFSTCVSPSSSTKNPLVIWLPSPLVLASQANQSVAPQRSEEWFALRRDKLTTSTFSTAL 159

Query: 92  GFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFA 151
           GFWKG RR ELWHEKVF  E Q  E  ++ AMEWGVLNE  AIDRYK ITG DVS LGFA
Sbjct: 160 GFWKGNRRIELWHEKVFPSEIQKTEAPQQNAMEWGVLNEVNAIDRYKGITGRDVSLLGFA 219

Query: 152 VHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQME 211
            H+E+Q DWLGASPDGLL CF GGGILEVKCPYNKGKPE  LPWST+PFYYMPQVQGQME
Sbjct: 220 THSEQQFDWLGASPDGLLECFQGGGILEVKCPYNKGKPEKGLPWSTIPFYYMPQVQGQME 279

Query: 212 ILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELAT 271
           I+ REW DLYCWTPNGSTIFRV R R YW+LI  IL+EFWWENVVPAKEAL +G EE A 
Sbjct: 280 IMGREWADLYCWTPNGSTIFRVCRERGYWDLIREILREFWWENVVPAKEALLLGSEEKAK 339

Query: 272 SYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR 311
           SY PTSTH+ TGLAI KS+KLASE+KL C+EIAGHVEF+R
Sbjct: 340 SYKPTSTHKQTGLAIAKSIKLASEAKLFCREIAGHVEFYR 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450393|ref|XP_004142947.1| PREDICTED: uncharacterized protein LOC101223120 isoform 2 [Cucumis sativus] gi|449494483|ref|XP_004159558.1| PREDICTED: uncharacterized protein LOC101224925 isoform 2 [Cucumis sativus]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 223/280 (79%)

Query: 32  RNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAL 91
           R FST  +   S    LV+  PS L + +   Q+   QRS+EWFALRRDKLTTSTFSTAL
Sbjct: 34  RPFSTCVSPSSSTKNPLVIWLPSPLVLASQANQSVAPQRSEEWFALRRDKLTTSTFSTAL 93

Query: 92  GFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFA 151
           GFWKG RR ELWHEKVF  E Q  E  ++ AMEWGVLNE  AIDRYK ITG DVS LGFA
Sbjct: 94  GFWKGNRRIELWHEKVFPSEIQKTEAPQQNAMEWGVLNEVNAIDRYKGITGRDVSLLGFA 153

Query: 152 VHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQME 211
            H+E+Q DWLGASPDGLL CF GGGILEVKCPYNKGKPE  LPWST+PFYYMPQVQGQME
Sbjct: 154 THSEQQFDWLGASPDGLLECFQGGGILEVKCPYNKGKPEKGLPWSTIPFYYMPQVQGQME 213

Query: 212 ILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREELAT 271
           I+ REW DLYCWTPNGSTIFRV R R YW+LI  IL+EFWWENVVPAKEAL +G EE A 
Sbjct: 214 IMGREWADLYCWTPNGSTIFRVCRERGYWDLIREILREFWWENVVPAKEALLLGSEEKAK 273

Query: 272 SYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAGHVEFFR 311
           SY PTSTH+ TGLAI KS+KLASE+KL C+EIAGHVEF+R
Sbjct: 274 SYKPTSTHKQTGLAIAKSIKLASEAKLFCREIAGHVEFYR 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525128|ref|XP_003531179.1| PREDICTED: uncharacterized protein LOC100810654 [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/305 (62%), Positives = 234/305 (76%), Gaps = 2/305 (0%)

Query: 6   LTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQN 65
           +TR S I        S KR+    I RNF+  ++  IS V  ++V  PS   + + ++  
Sbjct: 13  MTRFSGILRTTCVSSSPKRKHAKGILRNFTICASPFISSVDPIIVNSPSFQVLASNLSLA 72

Query: 66  DMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEW 125
           D+ QRS+EWFALR+DKLTTSTF TALGFWKG RR ELW EKVF+ E Q++  +   AM W
Sbjct: 73  DVPQRSEEWFALRKDKLTTSTFGTALGFWKGSRRPELWQEKVFASEAQIMGANN--AMAW 130

Query: 126 GVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYN 185
           G L EA A+++YK ITG++VSS+GFAVH+++  DWLGASPDG+LGC P  GILEVKCPYN
Sbjct: 131 GTLKEAVAVEQYKKITGNEVSSMGFAVHSKQSCDWLGASPDGVLGCPPQLGILEVKCPYN 190

Query: 186 KGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHG 245
           KGKPE  LPWS +PFYYMPQVQGQMEI+D EWVDLYCWTPNGSTIFRV+R R+YW LIH 
Sbjct: 191 KGKPEAGLPWSKMPFYYMPQVQGQMEIMDCEWVDLYCWTPNGSTIFRVLREREYWNLIHD 250

Query: 246 ILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAG 305
           +L+EFWWENVVPA+EAL +GREE   SY P STH+ TG+AI KS+KLA E+KL C+E+AG
Sbjct: 251 MLREFWWENVVPAREALLLGREEEVKSYKPASTHQKTGVAIAKSIKLAQETKLFCRELAG 310

Query: 306 HVEFF 310
           HVEF+
Sbjct: 311 HVEFY 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635157|gb|ACU17935.1| unknown [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/305 (62%), Positives = 234/305 (76%), Gaps = 2/305 (0%)

Query: 6   LTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVACVTQN 65
           +TR S I        S KR+    I RNF+  ++  IS V  ++V  PS   + + ++  
Sbjct: 13  MTRFSGILRTTCVSSSPKRKHAKGILRNFTICASPFISSVDPIIVNSPSLQVLASNLSLA 72

Query: 66  DMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEW 125
           D+ QRS+EWFALR+DKLTTSTF TALGFWKG RR ELW EKVF+ E Q++  +   AM W
Sbjct: 73  DVPQRSEEWFALRKDKLTTSTFGTALGFWKGSRRPELWQEKVFASEAQIMGANN--AMAW 130

Query: 126 GVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYN 185
           G L EA A+++YK ITG++VSS+GFAVH+++  DWLGASPDG+LGC P  GILEVKCPYN
Sbjct: 131 GTLKEAVAVEQYKKITGNEVSSMGFAVHSKQSCDWLGASPDGVLGCPPQLGILEVKCPYN 190

Query: 186 KGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHG 245
           KGKPE  LPWS +PFYYMPQVQGQMEI+D EWVDLYCWTPNGSTIFRV+R R+YW LIH 
Sbjct: 191 KGKPEAGLPWSKMPFYYMPQVQGQMEIMDCEWVDLYCWTPNGSTIFRVLREREYWNLIHD 250

Query: 246 ILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLCKEIAG 305
           +L+EFWWENVVPA+EAL +GREE   SY P STH+ TG+AI KS+KLA E+KL C+E+AG
Sbjct: 251 MLREFWWENVVPAREALLLGREEEVKSYKPASTHQKTGVAIAKSIKLAQETKLFCRELAG 310

Query: 306 HVEFF 310
           HVEF+
Sbjct: 311 HVEFY 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2824070	355	AT1G67660 [Arabidopsis thalian	0.887	0.777	0.589	2.7e-91
TAIR|locus:2014874	303	AT1G13810 [Arabidopsis thalian	0.672	0.689	0.384	5.7e-36

TAIR|locus:2824070 AT1G67660 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 165/280 (58%), Positives = 209/280 (74%)

Query:    32 RNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAL 91
             + FS+ + SLI+   S    P SS+ V + ++ +D+ Q+S+EWFALR+DKLTTSTFSTAL
Sbjct:    79 KRFSSTALSLITQTISPFAHPRSSVIVSSLLSPSDIPQKSEEWFALRKDKLTTSTFSTAL 138

Query:    92 GFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFA 151
             GFWKG RR+ELWHEKV+  + +V+E S R AM WGV  E++AI+RYK I G +V ++GFA
Sbjct:   139 GFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMESSAIERYKRIMGCEVGTMGFA 198

Query:   152 VHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQME 211
             +H+ E+  WLGASPDG+L CF   GILEVKCPYNKGK E  LPW  VP+YYMPQ+QGQME
Sbjct:   199 IHSNEEFHWLGASPDGILDCF---GILEVKCPYNKGKTETVLPWKKVPYYYMPQLQGQME 255

Query:   212 ILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGRE-ELA 270
             I+DREWV+LYCWT NGST+FRV+R R YW +IH +L+EFWWE+V+PA+EAL +G+E E  
Sbjct:   256 IMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLREFWWESVIPAREALLLGKEDEEV 315

Query:   271 TSYDPTSTHRLTGLAIVXXXXXXXXXXXXXXEIAGHVEFF 310
               Y+PTSTH+ T LAI               EIA HVEFF
Sbjct:   316 KKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIADHVEFF 355

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2014874 AT1G13810 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 87/226 (38%), Positives = 130/226 (57%)

Query:    42 ISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSE 101
             IS +  +V +     AVV  VT+     R + W  LR+++LT S F+ A+GF    RR+ 
Sbjct:    35 ISEIVGIVSKKEE--AVV--VTEPTHHWRKN-WEDLRKNRLTASNFARAIGFSPDGRRN- 88

Query:   102 LWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQL--- 158
             LW EK+ + +        R    W + NE  A++RY  +TG+++    F V+   +    
Sbjct:    89 LWLEKIGAAKPFA---GNRATF-WDIENEVEALERYNELTGNEILIPEFVVYKNGESPEE 144

Query:   159 DWLGASPDGLLGCFPGG----GILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILD 214
             +WLGASPDG++     G    G+LEVKCP++        PW  VP+  +PQ+QG MEI+D
Sbjct:   145 NWLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPYNCVPQLQGLMEIVD 204

Query:   215 REWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKE 260
              +W+DLYCWT NGS++FRV R   +WE +   L +FW  +V+PA+E
Sbjct:   205 TDWLDLYCWTRNGSSLFRVWRDTAFWEDMKPALFDFWQNHVLPARE 250


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       297   0.00093  115 3  11 22  0.37    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  255 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.25u 0.09s 22.34t   Elapsed:  00:00:01
  Total cpu time:  22.25u 0.09s 22.34t   Elapsed:  00:00:01
  Start:  Fri May 10 00:41:50 2013   End:  Fri May 10 00:41:51 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam09588	140	pfam09588, YqaJ, YqaJ-like viral recombinase domai	2e-37
TIGR03033	153	TIGR03033, phage_rel_nuc, putative phage-type endo	1e-17
COG5377	319	COG5377, COG5377, Phage-related protein, predicted	0.002

>gnl|CDD|220301 pfam09588, YqaJ, YqaJ-like viral recombinase domain

 Score =  129 bits (327), Expect = 2e-37
 Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 73  EWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAA 132
           EW A R+  +T S  +  LG    K   ELW EK        ++ S+  AM WG   E  
Sbjct: 1   EWLAARKGGITASDAAAILGLSPYKTPLELWLEKTGRRIPGDLKFSENEAMAWGHELEPL 60

Query: 133 AIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIA 192
           A   Y+  TG  V  +G  +   E   +LGASPDGL+      GILE+K P+        
Sbjct: 61  ARAEYEERTGDKVREVGGLLQHPED-PFLGASPDGLVVD-GDLGILEIKTPFETLFVAHV 118

Query: 193 L-PWSTVPFYYMPQVQGQMEI 212
                 +P YY+ QVQ Q+ +
Sbjct: 119 WGGADEIPDYYLAQVQHQLAV 139

This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit. Length = 140

>gnl|CDD|200235 TIGR03033, phage_rel_nuc, putative phage-type endonuclease

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 10/161 (6%)

Query: 66  DMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEW 125
           D++QR++EW A R+  +T S  +  +G    K   ELW EK   +E +   N    AM  
Sbjct: 1   DLVQRTEEWHAWRKGGITASDIAAIMGLNPYKTPEELWKEKTGFVEPE-DMNE---AMYH 56

Query: 126 GVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYN 185
           GV  E  A +         ++      H E    W+ AS DGL+       ILE+KCP  
Sbjct: 57  GVKLEPEARE-AFRDKYGIMAEPFCLEHDE--YPWMAASLDGLV--ADDKQILEIKCPSE 111

Query: 186 KG-KPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTP 225
           +  K  ++     VP YY  QVQ Q+ +   +      +  
Sbjct: 112 RVSKLWVSELSGEVPAYYQAQVQWQLYVSGSQAAYFAVYLG 152

Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions. Length = 153

>gnl|CDD|227668 COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 63/243 (25%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 62  VTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQV-IENSKR 120
           V          +W   RR  L  S     +G  K K   ELW EK      QV  + S+ 
Sbjct: 6   VLAKTPDMSRTQWLTHRRQGLGGSDAPIIMGLNKYKTPFELWLEKT----GQVTPDESQS 61

Query: 121 CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEV 180
            A  +G L E      ++  TG  V     A+    + D++ A+ D  +       ILE 
Sbjct: 62  EAAYFGELLEEVVAKEFERRTGKKVRRCN-AILRHPEYDFILANVDRDV--VGEKAILEC 118

Query: 181 KCPYNKGKPEIALPWS--TVPFYYMPQVQGQMEILDREWVDLYCWTPNGST-IFRVIRRR 237
           K         +A  W    +PF+Y+ Q+Q  + +L       +     G+  I++ I R 
Sbjct: 119 K----TTSAYMAKEWEDDEIPFHYIVQMQHYLGVLGEYRKAYFAVLIGGNKFIWKEIERD 174

Query: 238 DYWELIHGILQ---EFWWENV---VPAKEALSMGREE-LATSYDPTSTHRLTGLAIVKSL 290
           D  ELI+ I+    +FW + V   VP     S   E+ LA  Y  T   +   L    + 
Sbjct: 175 D--ELINMIINAEIDFWNDIVLGPVPPALDGSSAAEKYLALRYAKTEAVKTVDLPHFYAE 232

Query: 291 KLA 293
            LA
Sbjct: 233 ALA 235

Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
TIGR03033	153	phage_rel_nuc putative phage-type endonuclease. Me	100.0
PF09588	152	YqaJ: YqaJ-like viral recombinase domain; InterPro	100.0
COG5377	319	Phage-related protein, predicted endonuclease [DNA	100.0
PF01771	465	Herpes_alk_exo: Herpesvirus alkaline exonuclease;	99.41
PHA03293	523	deoxyribonuclease; Provisional	98.77
TIGR00372	178	cas4 CRISPR-associated protein Cas4. This model re	97.02
PF01930	162	Cas_Cas4: Domain of unknown function DUF83; InterP	96.82
PHA00619	201	CRISPR-associated Cas4-like protein	93.58
COG1468	190	CRISPR-associated protein Cas4 (RecB family exonuc	85.27

>TIGR03033 phage_rel_nuc putative phage-type endonuclease

Probab=100.00  E-value=2.4e-40  Score=283.69  Aligned_cols=151  Identities=30%  Similarity=0.424  Sum_probs=126.6

Q ss_pred             cCCCCCHHHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCCee
Q 021549           66 DMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDV  145 (311)
Q Consensus        66 ~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~~V  145 (311)
                      +++|+|++|+++|+++||||++++++|.++|+|+++||++|+|...+ .   ..|++|+||+.+||.|++.|+..++. +
T Consensus         1 ~~~Q~s~eWl~~R~~~ItaS~~~~i~g~s~~~t~~~L~~ek~g~~~~-~---~~~~~~~~G~~~Ep~a~~~~~~~~~~-~   75 (153)
T TIGR03033         1 DLVQRTEEWHAWRKGGITASDIAAIMGLNPYKTPEELWKEKTGFVEP-E---DMNEAMYHGVKLEPEAREAFRDKYGI-M   75 (153)
T ss_pred             CcccCHHHHHHHHhcCCCHhHHHHHHCCCccCCHHHHHHHHhCCCCC-c---cccHHHHHhHhhhHHHHHHHHhcCCe-E
Confidence            47999999999999999999999999999999999999999854332 2   25899999999999999987776654 3


Q ss_pred             eeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCC--CCcccCCCCCCCcccHHHHHHHhHhhcCCcEEEEEE
Q 021549          146 SSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKG--KPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCW  223 (311)
Q Consensus       146 ~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~--~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~fvv~  223 (311)
                      ..++++.++  ++||++|||||++.+  +.++||||||+...  .|.... .+.+|.+|++|||+||+|+|+++|||++|
T Consensus        76 ~~~~~~~~~--~~~~~~aSpDg~~~~--~~~ilEiK~~~~~~~~~w~~~~-~~~iP~~Y~~QvQ~ql~vtg~~~~~f~~~  150 (153)
T TIGR03033        76 AEPFCLEHD--EYPWMAASLDGLVAD--DKQILEIKCPSERVSKLWVSEL-SGEVPAYYQAQVQWQLYVSGSQAAYFAVY  150 (153)
T ss_pred             EeCcEEecC--CCCeEEECCceeecC--CCceEEEecCCcccchhhhhhc-cCCCcHHHHHHHHHHHhccCCCeEEEEEE
Confidence            456666665  589999999999853  25999999998653  443221 36899999999999999999999999999


Q ss_pred             cCC
Q 021549          224 TPN  226 (311)
Q Consensus       224 ~~~  226 (311)
                      +++
T Consensus       151 ~~~  153 (153)
T TIGR03033       151 IGG  153 (153)
T ss_pred             eCc
Confidence            874

Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.

>PF09588 YqaJ: YqaJ-like viral recombinase domain; InterPro: IPR019080 This protein is found in many different bacterial species but is of viral origin

Probab=100.00  E-value=1.5e-35  Score=252.14  Aligned_cols=142  Identities=39%  Similarity=0.587  Sum_probs=103.4

Q ss_pred             HHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccc--cccchhHHHHHHHHhHHHHHHHHHhHhCCeeee-cc
Q 021549           73 EWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQV--IENSKRCAMEWGVLNEAAAIDRYKSITGHDVSS-LG  149 (311)
Q Consensus        73 eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~--~~~~~n~am~~G~~~E~~a~~~ye~~~g~~V~~-~G  149 (311)
                      ||+++|+++||||++++|+|.++++++.+||.+|++....+.  .++.+|.+|+||+.+|+.|++.|++.+|..|.+ .|
T Consensus         1 eW~~~R~~~ItaS~~~~i~g~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~G~~~E~~a~~~~~~~~~~~v~~~~~   80 (152)
T PF09588_consen    1 EWLELRRGGITASEAAAILGISPYKTPFSLWREKLGERITEDLESPFSGNKAMQWGHELEPLARQFYEEKTGLEVKEPNG   80 (152)
T ss_dssp             HHHHHCTT-EEGGGHHHHH---SS-HHHHHHHHHHHHHHHSCH--S--SHHHHHHHHHHHHHHHHHHHHHHT--EE---S
T ss_pred             ChhHHHCCCcCHhHHHHHHCCCCCCCHHHHHHHHhCccccCCcCCcchhHHHHHHHHHhhHHHHHHHHHHhccceEecce
Confidence            799999999999999999999999999999999998743221  134579999999999999999999999999998 58


Q ss_pred             ceeeccccccccccCCCcccccCC-C--CcEEEEecCCCCCC----CcccCCCCCCCcccHHHHHHHhHhhcCC
Q 021549          150 FAVHAEEQLDWLGASPDGLLGCFP-G--GGILEVKCPYNKGK----PEIALPWSTVPFYYMPQVQGQMEILDRE  216 (311)
Q Consensus       150 l~i~~~~~~p~lgASPDGli~~~~-~--~~iLEIKcP~~~~~----~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~  216 (311)
                      +++++  ++|||+|||||++.+++ +  .++||||||+....    |......+++|++|++|||+||+|+|++
T Consensus        81 ~~~~~--~~~~l~aSpDg~~~~~~~~~~~~~lEiK~~~~~~~~~~~~~~~~~~~~ip~~Y~~QvQ~qm~vtg~e  152 (152)
T PF09588_consen   81 LFIHP--DHPWLGASPDGLVVCPSGGEERGLLEIKCPYSPKFISYKWGEAGESDKIPHYYYAQVQHQMAVTGAE  152 (152)
T ss_dssp             -EESS--CTTSEEE--SEEE--GCTT-CTEEEEEEE-SHHHHHHHHHHCGG-HHCCHHHHHHHHHHHHHHHT-S
T ss_pred             eEEcC--ccceeeecCCEEEeeccCCCccceEEEecCCchhhhhhhhcccccccCCCHHHHHHHHHHHHHHCcC
Confidence            88875  58999999999997753 3  79999999986221    2211112478999999999999999975

The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit []. ; PDB: 3SZ5_A 3SZ4_A 3SYY_A 3K93_A 1AVQ_A 3SM4_C 3SLP_A.

>COG5377 Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]

Probab=100.00  E-value=4.7e-34  Score=256.53  Aligned_cols=196  Identities=22%  Similarity=0.264  Sum_probs=173.0

Q ss_pred             ccccCCCCCH-----HHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHH
Q 021549           63 TQNDMLQRSD-----EWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRY  137 (311)
Q Consensus        63 ~~~~~~q~s~-----eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~y  137 (311)
                      ++.++.|+++     +|+..|+.+|+||+++.+||+|+|+|+++||++|+++.++.   ....++-.||..+|++++..|
T Consensus         2 k~~ev~~~t~dm~~~qWl~~R~~glggSDA~~imGln~ykt~fELwlekt~qv~p~---~~qseaayfg~~~Eevva~ef   78 (319)
T COG5377           2 KIIEVLAKTPDMSRTQWLTHRRQGLGGSDAPIIMGLNKYKTPFELWLEKTGQVTPD---ESQSEAAYFGELLEEVVAKEF   78 (319)
T ss_pred             chhhhhhcCCcccHHHHHHHHHhcCCCcchhhhhcCCccCCHHHHHHHhcCCCCCC---cchHHHHHHHHHHHHHHHHHH
Confidence            3455667777     99999999999999999999999999999999999988653   247789999999999999999


Q ss_pred             HhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEec--CCCCCCCcccCCCCCCCcccHHHHHHHhHhhc-
Q 021549          138 KSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKC--PYNKGKPEIALPWSTVPFYYMPQVQGQMEILD-  214 (311)
Q Consensus       138 e~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKc--P~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg-  214 (311)
                      ++++|.+|..|..+..+ +.+.|++|+.|..+...  ..+|||||  .|..+.|+.    +++|..|..|||||+.|+| 
T Consensus        79 errtGkkvrr~~~i~~h-p~~~F~~anvdr~vVgE--~aiLeckT~sA~m~~ew~~----~eiP~~Y~vQmqHyl~V~Ge  151 (319)
T COG5377          79 ERRTGKKVRRCNAILRH-PEYDFILANVDRDVVGE--KAILECKTTSAYMAKEWED----DEIPFHYIVQMQHYLGVLGE  151 (319)
T ss_pred             HHHhccchhhhhhhhcC-ccchhhhhhhHHHhhhh--hhhhccchHHHHHhccccc----ccCcHHHHHHHHHHHhhhhh
Confidence            99999999998876654 57999999999987542  58999999  466677774    7899999999999999999 


Q ss_pred             CCcEEEEEEcCC-CeEEEEEECCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchh
Q 021549          215 REWVDLYCWTPN-GSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGREE  268 (311)
Q Consensus       215 ~~~~~fvv~~~~-~~~v~rV~RD~~~~~~i~~~~~~Fw~~~V~p~~~p~~~~~~~  268 (311)
                      .+.++|+|++++ .+...+|+||++.++.|+..+.+||+++|+-..||+++|+.+
T Consensus       152 ~rk~y~AvligG~kfiwkeierddeLin~Ii~~e~~fw~d~v~~~~pPaldgssa  206 (319)
T COG5377         152 YRKAYFAVLIGGNKFIWKEIERDDELINMIINAEIDFWNDIVLGPVPPALDGSSA  206 (319)
T ss_pred             hhhhhheeeeccchhHHHHhhhhHHHHHHHHHHHHHHHhhccccCCCCCcccccc
Confidence            788899888865 678889999999999999999999999999999999998853

>PF01771 Herpes_alk_exo: Herpesvirus alkaline exonuclease; InterPro: IPR001616 Equid herpesvirus 1 (Equine herpesvirus 1) is a respiratory virus capable of causing abortion and neurological disease

Probab=99.41  E-value=2.5e-13  Score=134.96  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=73.3

Q ss_pred             ccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhC--
Q 021549           65 NDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITG--  142 (311)
Q Consensus        65 ~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g--  142 (311)
                      +.-|++++.|+.+|.+++|||.+...+.......  .+.....  ...   ....+++|.+|..+|+.|+..+++..-  
T Consensus       102 TRGQS~N~LW~lLR~~riTAS~~~~~~~~~~~~~--~l~~~~~--~~~---~~~~~~av~fG~~~E~~vk~li~~~v~~~  174 (465)
T PF01771_consen  102 TRGQSENPLWHLLRLGRITASKFYWVCKGPNSSP--ALFKGNP--IQN---NHYQSEAVAFGLRNEPVVKKLIEELVVKT  174 (465)
T ss_dssp             TTTGCCSCCHHHHCTTSEECCCHHHHHCT-CTTT--GCCS------------SS--SHHHHHHHHHHHHHHHHHHCTSS-
T ss_pred             hhcCccchhHHHHHCCceeeccceeeccCCcCcH--HHhcccc--ccc---cccCcHHHHhchhhHHHHHHHHHHhhccc
Confidence            3356689999999999999999999886322111  0000000  000   113678999999999999999988763  


Q ss_pred             ---CeeeeccceeeccccccccccCCCcccc-cC----------CCCcEEEEecCCCCC
Q 021549          143 ---HDVSSLGFAVHAEEQLDWLGASPDGLLG-CF----------PGGGILEVKCPYNKG  187 (311)
Q Consensus       143 ---~~V~~~Gl~i~~~~~~p~lgASPDGli~-~~----------~~~~iLEIKcP~~~~  187 (311)
                         ..|.+|||++++  ..+.+|||||.++. ..          ....++||||+|++.
T Consensus       175 ~~~~~v~~CGLfisp--~~Gl~gASpD~~f~r~~~g~~~~~~~~~~~~vyEIKCr~KY~  231 (465)
T PF01771_consen  175 RDSEEVLDCGLFISP--RTGLFGASPDAYFCRDETGELGPLEFEPDIVVYEIKCRYKYL  231 (465)
T ss_dssp             TTSTCE-----EE-T--TTSSEEE--SEEEC-EEEECTTEEEEECCCEEEEEEEEGCC-
T ss_pred             cCCCcccceeeeecC--CCCccccchhheeeeccCCCCCccccCCceEEEEEecccccc
Confidence               578999999986  47999999999987 21          136789999998864

Its complete DNA sequence has been determined [] and the constituent genes found to be arranged co-linearly with those in the genomes of other alphaherpesviruses, namely Human herpesvirus 3 (HHV-3) and Human herpesvirus 1 (HHV-1) []. Comparisons of the predicted amino acid sequences have allowed functions of many EHV-1 proteins to be inferred. For example, detailed analysis of HHV-1 and Human herpesvirus 2 (HHV-2) DNA has revealed an open reading frame sufficient to encode 626 amino acids for the HHV-1 alkaline exonuclease (620 amino acids for HHV-2) []. Comparison of the predicted amino acid sequences of the viral enzymes has revealed significant differences in the N-terminal portions of the proteins; nevertheless, their three-dimensional structures are believed to be similar.; GO: 0003677 DNA binding, 0004527 exonuclease activity; PDB: 3FHD_A 3POV_A 2W45_B 2W4B_B.

>PHA03293 deoxyribonuclease; Provisional

Probab=98.77  E-value=1e-08  Score=102.52  Aligned_cols=110  Identities=24%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             CCCCCHHHHHHhhCCCccchHHHhhCCCCCCCh-HHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhC---
Q 021549           67 MLQRSDEWFALRRDKLTTSTFSTALGFWKGKRR-SELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITG---  142 (311)
Q Consensus        67 ~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~-~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g---  142 (311)
                      -|+.++.|+.+|.+++|||.+.-  |  +.+.. .--|.+.-....    ....+.+|.+|+.+|+.|+...+...-   
T Consensus       133 GQS~N~LW~lLR~~~iTAS~~~w--~--~~g~~~~p~~~~~~~~~~----~~~~s~Av~FG~~nE~~vK~Ll~~~~~~~~  204 (523)
T PHA03293        133 NQAECDLWALLRRGLLTASTLKW--G--ANGPCFPPQWCKVNTGAR----GIPQSAAVAFGRTNEPLARALIEAYCVGPS  204 (523)
T ss_pred             cCccCHHHHHHHcCCceecceec--c--CCCCccCccccccccccc----ccccchHhhhchhhhHHHHHHHHHHccCCc
Confidence            46689999999999999998763  1  11110 001221110000    012468999999999999998887431   


Q ss_pred             ------------------------CeeeeccceeeccccccccccCCCccccc-C--C---------CCcEEEEecCCCC
Q 021549          143 ------------------------HDVSSLGFAVHAEEQLDWLGASPDGLLGC-F--P---------GGGILEVKCPYNK  186 (311)
Q Consensus       143 ------------------------~~V~~~Gl~i~~~~~~p~lgASPDGli~~-~--~---------~~~iLEIKcP~~~  186 (311)
                                              .....|||++++  .-+.+|||+|-++.. +  +         ...+.||||-+.+
T Consensus       205 ~~~~~~~~~~~~~f~f~~~~~~~~~~~~~cGlLiDp--~tG~~GASLDm~v~~rd~~G~L~~~~~~~~~~iyEIKCRaKY  282 (523)
T PHA03293        205 TDDGGTDPDDGEFFVFDEPVGSPPEEAYACGLLIDA--RTGMVGASLDMLVCDRDPHGVLAPHPTQTTLEFFEIKCRAKY  282 (523)
T ss_pred             ccccccccccccceecccccCCCCCcceeeeeEecC--CCCcccccCceEecccCCCCcccccCCCCceeEEEEeccccc
Confidence                                    124469999986  479999999998733 1  1         2579999997654

>TIGR00372 cas4 CRISPR-associated protein Cas4

Probab=97.02  E-value=0.022  Score=49.25  Aligned_cols=154  Identities=18%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             CccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCCeeeeccceeecccccccc
Q 021549           82 LTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWL  161 (311)
Q Consensus        82 ITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~l  161 (311)
                      |+.|.+...+=+     |...|.+...+...     .++..|.-|......+.+......+.. .+....+..+ .+ -+
T Consensus         1 i~~s~i~~~~~C-----pR~~~~~~~~~~~~-----~~~~~~~~G~~~h~~~~~~~~~~~~~~-~~~~v~l~~~-~~-~l   67 (178)
T TIGR00372         1 ITVSDVLEYLYC-----PRKLWYMKKGGSER-----FSEVRMILGRLIHERAESFLKSLGGVR-EEKEVPLKSK-KL-GL   67 (178)
T ss_pred             CChHHhHHHHhC-----hHHHHHHHhhcccc-----cchhHHHHHHHHHHHhhhhhhccCCEE-EEEeeEeEcc-cC-Cc
Confidence            345555544433     56788888766543     234569999987666653332222222 2334445442 23 47


Q ss_pred             ccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcE----EEEEEcCCCeEEEEEECCH
Q 021549          162 GASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWV----DLYCWTPNGSTIFRVIRRR  237 (311)
Q Consensus       162 gASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~----~fvv~~~~~~~v~rV~RD~  237 (311)
                      .+.+|.+...+++..++|+|+.....           ...|..|++.|.+++.....    -+++|...+. ...|+.|+
T Consensus        68 ~G~iD~i~~~~~~~~ive~Ktg~~~~-----------~~~~~~Ql~~Ya~~l~~~~~~v~~g~l~y~~~~~-~~~v~~~~  135 (178)
T TIGR00372        68 KGVIDVVLEADGELVPVEVKSGKPKL-----------REAHKYQLLAYAYLLEEMYGEIVRGYILYIEAGK-KLEVEISE  135 (178)
T ss_pred             EEEEEEEEEECCeEEEEEEecCCCCC-----------ChhHHHHHHHHHHHHHHhhCCCCcEEEEEEeCCc-EEEecCCH
Confidence            88899888766456799999953211           14477899999888775542    2333444433 34888999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCC
Q 021549          238 DYWELIHGILQEFWWENVVPAKEA  261 (311)
Q Consensus       238 ~~~~~i~~~~~~Fw~~~V~p~~~p  261 (311)
                      +..+.+.+.+.+.- +.+..+.+|
T Consensus       136 ~~~~~~~~~~~~i~-~~~~~~~~P  158 (178)
T TIGR00372       136 ELRKKAEKLIEKIR-ELLEGGKPP  158 (178)
T ss_pred             HHHHHHHHHHHHHH-HHHhCCCCC
Confidence            88888887777764 455555555

This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.

>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins

Probab=96.82  E-value=0.025  Score=48.42  Aligned_cols=143  Identities=14%  Similarity=0.006  Sum_probs=88.7

Q ss_pred             ccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCCeeeeccceeeccccccccc
Q 021549           83 TTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLG  162 (311)
Q Consensus        83 TAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lg  162 (311)
                      |+|++-..+=+     |..+|....+....     ..+..|..|+....   ..|.+..      .++.+ ++      .
T Consensus         1 t~s~v~~y~~C-----pR~~~l~~~~~~~~-----~~~~~~~~G~~~h~---~~~~~~~------~~v~v-s~------~   54 (162)
T PF01930_consen    1 TGSMVNEYVYC-----PRRAYLERVGIEPE-----EPTESMELGRELHE---ERYEREK------REVPV-SE------S   54 (162)
T ss_pred             CHHHhhHHHHc-----cHHHHHHHcCCccc-----CCHhHHHhhHHhhh---hhhhhcc------eeecc-CC------c
Confidence            45555544432     56788888732221     24568888988766   2222211      12222 21      7


Q ss_pred             cCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhc---CCcEEEEEEcCCCeEEEEEECCHHH
Q 021549          163 ASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILD---REWVDLYCWTPNGSTIFRVIRRRDY  239 (311)
Q Consensus       163 ASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg---~~~~~fvv~~~~~~~v~rV~RD~~~  239 (311)
                      +-+|.+...++...++|+|.....            ...+..|+..|+++..   .+.-.-+++..++-...+|+-|++.
T Consensus        55 G~iD~v~~~~~~~~~~E~K~~~~~------------~~~~~~Ql~~Y~~lL~~~g~~v~~G~i~y~~~~~~~~v~~~~~~  122 (162)
T PF01930_consen   55 GKIDIVEKGGGEIIPVEIKSGRKP------------REEHRMQLAAYALLLEEFGIPVKRGYIYYIEDRKRVRVEITEEL  122 (162)
T ss_pred             EEEEEEEEeCCEEEEEEEecCCCC------------cchhHHHHHHHHHHHHhcCccceeEEEEEecCCeEEEEeCCHHH
Confidence            888988855556789999985322            1123679999988877   2222123344455556669999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCC
Q 021549          240 WELIHGILQEFWWENVVPAKEALSM  264 (311)
Q Consensus       240 ~~~i~~~~~~Fw~~~V~p~~~p~~~  264 (311)
                      .+.+.+.+.++- +.+..+.+|++.
T Consensus       123 ~~~v~~~i~~i~-~~~~~~~~P~~~  146 (162)
T PF01930_consen  123 RRKVEKLIEEIR-KILEGESPPPPE  146 (162)
T ss_pred             HHHHHHHHHHHH-HHHhCCCcCCCC
Confidence            999999999886 566666666654

>PHA00619 CRISPR-associated Cas4-like protein

Probab=93.58  E-value=1.5  Score=39.29  Aligned_cols=158  Identities=12%  Similarity=-0.026  Sum_probs=87.7

Q ss_pred             hhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCCeeeecc-ceeeccc
Q 021549           78 RRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLG-FAVHAEE  156 (311)
Q Consensus        78 R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~~V~~~G-l~i~~~~  156 (311)
                      |.+.|..|+++.        -+..+|..........  +......|.-|+..-....+...+ .+....... ..+.   
T Consensus        19 ~~~~i~~sd~~~--------CpRk~w~~~~~~~~~~--~~~~~~~~~~G~~iHe~~~~~~~~-~sy~~e~~ve~~i~---   84 (201)
T PHA00619         19 DLQTIWVTELSR--------CLRRSWLMRKNGGVKL--ALEEAMKMHIGSGLHMRLQRILKK-HGFETECRVERKTA---   84 (201)
T ss_pred             CCCeEEeeehhc--------CccHHHHHHhcccccc--ccccchHHHhhHHHHHHHHHHHhh-cCceeEEEEEEecc---
Confidence            446677777652        2356788876543221  122456778998886555555543 222222100 0111   


Q ss_pred             cccc-cccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEEEEEEcCCCeEEEEEEC
Q 021549          157 QLDW-LGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIR  235 (311)
Q Consensus       157 ~~p~-lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~fvv~~~~~~~v~rV~R  235 (311)
                       ..+ +.+..|.+.  +++..|+|+|+.-....+      ...-..+..|++.||+..+...+.++.+..+. ....|+-
T Consensus        85 -~~~~i~G~ID~i~--~~~~~vvEiK~s~~~~~~------~~~~~~~~~QL~~Yl~lL~~~~G~l~~~~~~r-k~~eV~~  154 (201)
T PHA00619         85 -LGFEIVGKIDVYD--KEENTIYELKYTHMDDLD------KGRLNNYLRQLNYYIEMANAMAGYLIIVHADG-RVEEIKR  154 (201)
T ss_pred             -cceEEEEEEEEEe--CCCcEEEEEEccCCCccc------ccchHHHHHHHHHHHHHHHhcCcEEEEEcCCC-ceEEeec
Confidence             123 667888883  234589999995322111      11234577899999999987666665444443 2334443


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCC
Q 021549          236 RRDYWELIHGILQEFWWENVVPAKEA  261 (311)
Q Consensus       236 D~~~~~~i~~~~~~Fw~~~V~p~~~p  261 (311)
                      | .-.+++.+.+.+.. +.|..+.+|
T Consensus       155 ~-~~~~~l~~~i~~I~-~ii~~~~~P  178 (201)
T PHA00619        155 D-WSETDLENRANAFG-ISVEENILP  178 (201)
T ss_pred             c-ccHHHHHHHHHHHH-HHHhcCcCC
Confidence            3 44466666666665 556555555

>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms]

Probab=85.27  E-value=24  Score=31.41  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             hhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHh--CCeeeeccceeecc
Q 021549           78 RRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSIT--GHDVSSLGFAVHAE  155 (311)
Q Consensus        78 R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~--g~~V~~~Gl~i~~~  155 (311)
                      +...+++|++...+-+     +..+|....++...      .++++.-|......+....+...  ...|.-.|..+   
T Consensus        12 ~~~~i~~~~v~~y~~C-----prk~w~~~~~~~~~------~~~~~~~~~~l~~~i~~~~~~~~~~~~~v~l~~~~i---   77 (190)
T COG1468          12 NSMRITGSDVNEYLYC-----PRKLWLFSRGGPEE------SPEVYSEGVELGKLIHEKLEKFLRDEKEVELEGEWI---   77 (190)
T ss_pred             cceeecHHHHHHHHhc-----CHHHHHHHhcCccc------cchhcchhhhhhHHHHHHHHHHhcccccceecceee---
Confidence            3456888888887766     36799988876543      22333344444333333332211  11121112111   


Q ss_pred             ccccccccCCCcccccCC---CCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEEE---EEEcCCCeE
Q 021549          156 EQLDWLGASPDGLLGCFP---GGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDL---YCWTPNGST  229 (311)
Q Consensus       156 ~~~p~lgASPDGli~~~~---~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~f---vv~~~~~~~  229 (311)
                              ..|++.+...   ...++|||......         ..|  ...|++.+|++.....+..   +.+-+..-.
T Consensus        78 --------~~d~lk~~~~~~~~~~~vEiK~~~~~~---------~~~--~~~Ql~~ylyl~e~~g~~v~~g~i~Y~~~~k  138 (190)
T COG1468          78 --------KIDFLKGRMDLEVKDVVVEIKKSKKME---------KAP--HKLQLAYYLYLEEKLGIAVAKGYIYYPKLKK  138 (190)
T ss_pred             --------eeeeecccceeeccceeEEEecCcCcc---------cch--HHHHHHHHHHHHHhhCceeeeEEEEecccCc
Confidence                    3333332210   12689999854332         223  4579999999988333331   223333347


Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHHhcCCC-CCCCC
Q 021549          230 IFRVIRRRDYWELIHGILQEFWWENVVPA-KEALS  263 (311)
Q Consensus       230 v~rV~RD~~~~~~i~~~~~~Fw~~~V~p~-~~p~~  263 (311)
                      .+.|+-|++..+.+.+.+.+-  +.++.+ .||++
T Consensus       139 ~~~Vei~~~~~e~v~~~~~ei--~~ile~~~~p~~  171 (190)
T COG1468         139 RVEVELTEELREEVERVLKEI--EEILEGGKPPPP  171 (190)
T ss_pred             EEEEEeCHHHHHHHHHHHHHH--HHHHhCCCCCCC
Confidence            888999999888888888776  344444 44433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	311
3syy_A	216	Crystal Structure Of An Alkaline Exonuclease (Lhk-E		5e-10

>pdb|3SYY|A Chain A, Crystal Structure Of An Alkaline Exonuclease (Lhk-Exo) From Laribacter Hongkongensis Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 67  MLQRSDEWFALRRDKLTTSTFS-----TALGFWKGKRR--SELWHEKVFSLETQVIENSK 119
           M QR++EWFA R  K+T S  +     T  G+   ++   +EL  +++    TQ I  S 
Sbjct: 1   MEQRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTG--TQEIRFSN 58
Query: 120 RCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILE 179
             AM+ G   E  A  RY   TG  V+ +G   H    +   GASPDGL+G     G++E
Sbjct: 59  -AAMQRGTELEPHARARYIIETGEIVTEVGLIDHP--TIAGFGASPDGLVG---DTGLIE 112
Query: 180 VKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCW 223
           +KCP      E        P  Y+ Q+Q QM    R+W D   +
Sbjct: 113 IKCPNTWTHIETIKTGKPKP-EYIKQMQTQMACTGRQWCDFVSY 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3sm4_A	229	Exonuclease; homologous recombination, DNA repair,	2e-32
3syy_A	216	Exonuclease; digest double stranded DNA, strict 5-	5e-32
3k93_A	223	Phage related exonuclease; structural genomics, jo	1e-30
3fhd_A	508	ORF 37; enase like PD-(D/E)XK superfamily, hydrola	2e-14
2w45_A	470	Nuclease, alkaline exonuclease; endonuclease, gamm	2e-12

>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A Length = 229

 Score =  118 bits (297), Expect = 2e-32
 Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 16/212 (7%)

Query: 53  PSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWK-----GKRRSELWHEKV 107
           P  +     +    + Q  D W  LR   +T S     +   +        +   +H  +
Sbjct: 6   PDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLL 65

Query: 108 FSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDG 167
             + T V       A+ WG   E  A   ++  +G +V+        E        SPDG
Sbjct: 66  AEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESM--RTACSPDG 123

Query: 168 LLGCFPGGGILEVKCPYNKGKPEIAL--PWSTVPFYYMPQVQGQMEILDREWVDLYCWTP 225
           L         LE+ CP+            +  +   YM QVQ  M +  +       + P
Sbjct: 124 LCSDGN---GLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDP 180

Query: 226 ----NGSTIFRVIRRRDYWELIHGILQEFWWE 253
                G     + R   Y      I+ EF  +
Sbjct: 181 RMKREGLHYVVIERDEKYMASFDEIVPEFIEK 212

>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A Length = 216

 Score =  117 bits (294), Expect = 5e-32
 Identities = 56/218 (25%), Positives = 84/218 (38%), Gaps = 22/218 (10%)

Query: 69  QRSDEWFALRRDKLTTSTFSTALGFWKG-------KRRSELWHEKVFSLETQVIENSKRC 121
           QR++EWFA R  K+T S  +  +   K           +EL  +++   +     N+   
Sbjct: 3   QRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEIRFSNA--- 59

Query: 122 AMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVK 181
           AM+ G   E  A  RY   TG  V+ +G   H        GASPDGL+G      ++E+K
Sbjct: 60  AMQRGTELEPHARARYIIETGEIVTEVGLIDHPTIA--GFGASPDGLVGDTG---LIEIK 114

Query: 182 CPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGST-----IFRVIRR 236
           CP      E           Y+ Q+Q QM    R+W D   +             R+ R 
Sbjct: 115 CPNTWTHIETIKTGK-PKPEYIKQMQTQMACTGRQWCDFVSYDDRLPDDMQYFCTRIERD 173

Query: 237 RDYWELIHGILQEFWWENVVPAKEALSMGREELATSYD 274
                 I   +  F  E +    E L     +LA + +
Sbjct: 174 DALIAEIETEVSAFLAE-LEAEIEYLKRKAAKLAAALE 210

>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT} Length = 223

 Score =  114 bits (286), Expect = 1e-30
 Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 19/191 (9%)

Query: 101 ELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDW 160
           E+    +F         +K    + G   E  AI       G  +             ++
Sbjct: 43  EMAKFDLFGYNAFE--GNK--YTQKGNELEEQAIKLSGVTRGLALKKNTERREN----EF 94

Query: 161 LGASPDGLLGCFPGGGILEVKCPYNKG---KPEIALPWSTVPFYYMPQVQGQMEILDREW 217
           +    D          I++ KC ++ G                 Y  Q+QG M + D + 
Sbjct: 95  ITGECDIY--VPSRKLIIDTKCSWDIGSHPFFTDEAQEKAKKAGYDIQMQGYMWLWDCDQ 152

Query: 218 VDL-YCWTPNGSTIFRVIR-RRDYWELIHGILQEFWWENVV----PAKEALSMGREELAT 271
             + +   P    +           +L+  I Q      V+             R   A 
Sbjct: 153 AQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQ 212

Query: 272 SYDPTSTHRLT 282
            Y       ++
Sbjct: 213 KYYDQLISEMS 223

>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A* Length = 508

 Score = 72.5 bits (177), Expect = 2e-14
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 69  QRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVL 128
             +  W ALR   +++S F      W  K+++    +K+FS       +     + +G+ 
Sbjct: 152 SLNPVWDALRDGIISSSKF-----HWAVKQQNT--SKKIFSPWPITNNHFVAGPLAFGLR 204

Query: 129 NEAAAIDRYKS-ITGHDVSSLGFAVHAEEQLDWLGASPD----------GLLGCFPGGGI 177
            E        + +   + + L +      Q    G S D          G L   P   +
Sbjct: 205 CEEVVKTLLATLLHPDETNCLDYGFMQSPQNGIFGVSLDFAANVKTDTEGRLQFDPNCKV 264

Query: 178 LEVKCPYN 185
            E+KC + 
Sbjct: 265 YEIKCRFK 272

>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A Length = 470

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 23/128 (17%)

Query: 70  RSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLN 129
            +  W  LR   +++S           K        KVF        +     + +G+  
Sbjct: 115 ENLMWDILRNGIISSSKL-----LSTIKNGPT----KVFEPAPISTNHYFGGPVAFGLRC 165

Query: 130 EAAA---IDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGG---------I 177
           E      + +            GF +         G S D  +     G          I
Sbjct: 166 EDTVKDIVCKLICGDASANRQFGFMISP--TDGIFGVSLDLCVNVESQGDFILFTDRSCI 223

Query: 178 LEVKCPYN 185
            E+KC + 
Sbjct: 224 YEIKCRFK 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3sm4_A	229	Exonuclease; homologous recombination, DNA repair,	100.0
3syy_A	216	Exonuclease; digest double stranded DNA, strict 5-	100.0
3k93_A	223	Phage related exonuclease; structural genomics, jo	99.96
2w45_A	470	Nuclease, alkaline exonuclease; endonuclease, gamm	99.76
3fhd_A	508	ORF 37; enase like PD-(D/E)XK superfamily, hydrola	99.64
4ic1_A	206	Uncharacterized protein; CAS4, crispr, MCSG, exonu	93.99

>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A

Probab=100.00  E-value=3.3e-48  Score=351.94  Aligned_cols=184  Identities=21%  Similarity=0.292  Sum_probs=162.9

Q ss_pred             cccccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCCh---------HHHHHHHHcCccccccccchhHHHHHHHHhHHH
Q 021549           62 VTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRR---------SELWHEKVFSLETQVIENSKRCAMEWGVLNEAA  132 (311)
Q Consensus        62 ~~~~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~---------~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~  132 (311)
                      |++.+++|+|+||+++|+++||||+++++||.++++++         .+||+||++|...+    .+|++|+||+.+||.
T Consensus        15 ~~i~~~~Q~s~eWl~~R~~~ItaS~~~~ilg~~~~~sp~~~~~~~y~~~L~~ek~~g~~~~----~~~~a~~~G~~~Ep~   90 (229)
T 3sm4_A           15 IDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPE----VNAKALAWGKQYEND   90 (229)
T ss_dssp             CCTTCCCSSSHHHHHHTTTCEEGGGTHHHHCCCSSSSCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCHHHHHHHCCCccHhHHHHHHCCCCCCCccchhhHHHHHHHHHHHhcCCCCC----CChHHHHHHHHhHHH
Confidence            78899999999999999999999999999999999988         69999998877543    368999999999999


Q ss_pred             HHHHHHhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCC--CCCCCcccHHHHHHHh
Q 021549          133 AIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALP--WSTVPFYYMPQVQGQM  210 (311)
Q Consensus       133 a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~--~~~iP~~Y~~QVQ~qM  210 (311)
                      |++.|++.+|.+|.++|+++++  ++|||+|||||++.+   .++||||||+...++.....  .+++|.+|++|||+||
T Consensus        91 ar~~y~~~tg~~V~~~g~~~~~--~~p~l~ASpDGlv~~---~~ilEiKcp~~~~~~~~~~~~g~~~ip~~Y~~QvQ~qm  165 (229)
T 3sm4_A           91 ARTLFEFTSGVNVTESPIIYRD--ESMRTACSPDGLCSD---GNGLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQYSM  165 (229)
T ss_dssp             HHHHHHHHHSCCEECCCCEESS--TTCCEEECCSEEETT---SCEEEEECCSSHHHHHHHHHHGGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeeEECCeEEeC--CCCceeecCceecCC---CcEEEEecCCcchhhHHHHhcCcccCCHHHHHHHHHHH
Confidence            9999999999999999998876  489999999999954   48999999987532211111  1369999999999999


Q ss_pred             HhhcCCcEEEEEEcCC----CeEEEEEECCHHHHHHHHHHHHHHHHHhc
Q 021549          211 EILDREWVDLYCWTPN----GSTIFRVIRRRDYWELIHGILQEFWWENV  255 (311)
Q Consensus       211 ~Vtg~~~~~fvv~~~~----~~~v~rV~RD~~~~~~i~~~~~~Fw~~~V  255 (311)
                      +|+|+++|||++|+++    ++++++|+||+++++.|++++.+||. .|
T Consensus       166 ~vtg~~~~~f~~~~~~~~~~~~~i~rI~RD~~~i~~l~~~~~~Fw~-~v  213 (229)
T 3sm4_A          166 WVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE-KM  213 (229)
T ss_dssp             HHHTCSEEEEEEECTTSSSCCEEEEEEECCHHHHHHHHHHHHHHHH-HH
T ss_pred             HhcCCCEEEEEEEeCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH-HH
Confidence            9999999999999985    58999999999999999999999994 44

>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A

Probab=100.00  E-value=2.9e-47  Score=342.87  Aligned_cols=180  Identities=29%  Similarity=0.434  Sum_probs=149.7

Q ss_pred             CCCCCHHHHHHhhCCCccchHHHhh-----CCCCCCC--hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHh
Q 021549           67 MLQRSDEWFALRRDKLTTSTFSTAL-----GFWKGKR--RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKS  139 (311)
Q Consensus        67 ~~q~s~eW~~~R~~rITAS~~a~il-----g~~~~~s--~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~  139 (311)
                      ++|||+||+++|+++||||+++++|     |++++++  +.+||.||++|...+   +.+|++|+||+.+||.|++.|++
T Consensus         1 ~~Q~s~eW~~~R~~~ItaS~~~~i~~~~~~G~~~~~~~~~~~L~~ek~tG~~~~---~~~~~a~~~G~~lE~~a~~~~~~   77 (216)
T 3syy_A            1 MEQRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEI---RFSNAAMQRGTELEPHARARYII   77 (216)
T ss_dssp             ----CCHHHHHHTTCEEGGGHHHHHCC-----CHHHHHHHHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHhcccCCCCchhhhHHHHHHHHHHcCCCCC---ccccHHHHHhHHhHHHHHHHHHH
Confidence            5899999999999999999999999     7777654  359999998676543   24799999999999999999999


Q ss_pred             HhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEE
Q 021549          140 ITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVD  219 (311)
Q Consensus       140 ~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~  219 (311)
                      .+|..|.++|++.++  .+|||+|||||++.++   ++||||||+....+.. ...+++|.+|++|||+||+|||+++||
T Consensus        78 ~~g~~v~~~g~~~~~--~~~~l~ASpDG~v~~~---~ilEiK~p~~~~~~~~-~~~~~ip~~Y~~QvQ~qm~Vtg~~~~~  151 (216)
T 3syy_A           78 ETGEIVTEVGLIDHP--TIAGFGASPDGLVGDT---GLIEIKCPNTWTHIET-IKTGKPKPEYIKQMQTQMACTGRQWCD  151 (216)
T ss_dssp             HHCCCEECCCCEECS--SSTTEEECCSEEETTT---EEEEEECCCHHHHHHH-HHHCSCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHCCEeEEcceEECC--CCccceeCCCEeecCC---ceEEEecCCccchHHH-HhCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            999999999997775  5899999999999764   8999999986543211 113689999999999999999999999


Q ss_pred             EEEEcCC-----CeEEEEEECCHHHHHHHHHHHHHHHHHhcC
Q 021549          220 LYCWTPN-----GSTIFRVIRRRDYWELIHGILQEFWWENVV  256 (311)
Q Consensus       220 fvv~~~~-----~~~v~rV~RD~~~~~~i~~~~~~Fw~~~V~  256 (311)
                      |+||+++     .+.+++|+||+++|+.|++++.+|| +.|.
T Consensus       152 f~v~~~~~~~~~~~~~~rI~RD~~~i~~l~~~~~~Fw-~~v~  192 (216)
T 3syy_A          152 FVSYDDRLPDDMQYFCTRIERDDALIAEIETEVSAFL-AELE  192 (216)
T ss_dssp             EEEECTTSCGGGSEEEEEEECCHHHHHHHHHHHHHHH-HHHH
T ss_pred             EEEecCCCCCCCceEEEEEECCHHHHHHHHHHHHHHH-HHHH
Confidence            9999973     6889999999999999999999999 4543

>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT}

Probab=99.96  E-value=2e-29  Score=225.96  Aligned_cols=164  Identities=17%  Similarity=0.131  Sum_probs=129.8

Q ss_pred             HHhhCCCccchHHHhhCCCCC------C--C------hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHh
Q 021549           76 ALRRDKLTTSTFSTALGFWKG------K--R------RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSIT  141 (311)
Q Consensus        76 ~~R~~rITAS~~a~ilg~~~~------~--s------~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~  141 (311)
                      .+|.-+||||.++.+|+..+.      .  +      ..+|..|+++|..+    +.+|++|+||+.+||.||++|+..+
T Consensus         4 ~~~~~~iTaS~~~~v~~~~k~~~~~~~g~~s~~a~~Y~~eLi~E~ltG~~~----~~~n~~m~~G~~lEp~Ar~~y~~~~   79 (223)
T 3k93_A            4 NLYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYNA----FEGNKYTQKGNELEEQAIKLSGVTR   79 (223)
T ss_dssp             GGCCCCEEGGGHHHHHCCCSSHHHHHTTCCCHHHHHHHHHHHHHHHHCCCS----CCCCHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccceeeeEechHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHhCCCc----ccCCHHHHhhHhhhHHHHHHHHHHH
Confidence            356678999999999987663      1  1      47899999998742    3589999999999999999999999


Q ss_pred             CCeeee-ccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcc----cHHHHHHHhHhhcCC
Q 021549          142 GHDVSS-LGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFY----YMPQVQGQMEILDRE  216 (311)
Q Consensus       142 g~~V~~-~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~----Y~~QVQ~qM~Vtg~~  216 (311)
                      |..+.+ +|+..     .+++||||||++.++  .++||||||++..+.... ..+.++..    |++|||+||+++|++
T Consensus        80 ~~~~~~~~~~~~-----~d~~g~SpDGl~~~~--~gllEIKCp~s~~t~~~~-~~e~~~k~~~~~Y~~QmQ~~M~l~g~~  151 (223)
T 3k93_A           80 GLALKKNTERRE-----NEFITGECDIYVPSR--KLIIDTKCSWDIGSHPFF-TDEAQEKAKKAGYDIQMQGYMWLWDCD  151 (223)
T ss_dssp             TCCCCCCCCCEE-----CSSEEECCSEEEGGG--TEEEEEEECSSTTTSCCS-HHHHHHHHHHHTHHHHHHHHHHHHTCS
T ss_pred             CCccccccceec-----cCCeeecCccccCCC--CCeEEEeCCCCccccchh-hhcCccccccccHHHHHHhhhhhcCCC
Confidence            998874 66543     358999999999752  499999999986542211 01223433    999999999999999


Q ss_pred             c--EEEEEEc-C-----------------------CCeEEEEEECCHHHHHHHHHHHHHHH
Q 021549          217 W--VDLYCWT-P-----------------------NGSTIFRVIRRRDYWELIHGILQEFW  251 (311)
Q Consensus       217 ~--~~fvv~~-~-----------------------~~~~v~rV~RD~~~~~~i~~~~~~Fw  251 (311)
                      |  |||+.+. |                       ..+.+++|+||++++++|.+++..|-
T Consensus       152 ~a~~df~l~~~P~~~~~~yd~~~~~~~~v~~i~~~~ri~~~~V~RDe~~I~~i~~~v~~~~  212 (223)
T 3k93_A          152 QAQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQ  212 (223)
T ss_dssp             EEEEEEECCCCCGGGCCTTSCHHHHTHHHHTSCGGGGEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             ceeeeEEEecChhhhccccCchhhhhhhhhccChhhceEEEEEecCHHHHHHHHHHHHHHH
Confidence            9  6666655 2                       24789999999999999999998875

>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A

Probab=99.76  E-value=1.6e-19  Score=176.96  Aligned_cols=112  Identities=17%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             ccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHh---Hh
Q 021549           65 NDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKS---IT  141 (311)
Q Consensus        65 ~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~---~~  141 (311)
                      +.-||+|++|+.+|.++||||.++.++..++.+. +..|.    +. .   +...+++|+||+++|+.|++.|+.   .+
T Consensus       110 TRgQs~n~lW~~LR~GrITAS~~~~v~~~~~~k~-~~~~~----~~-~---~~~~s~Am~fG~~~E~~Ar~l~e~~~~~~  180 (470)
T 2w45_A          110 TRGQSENLMWDILRNGIISSSKLLSTIKNGPTKV-FEPAP----IS-T---NHYFGGPVAFGLRCEDTVKDIVCKLICGD  180 (470)
T ss_dssp             HSSCTTSHHHHHHHTTCEESTTHHHHHHHCSGGG-GSCC---------------CCSHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             hhccCCCHHHHHHHCCCccccccchhhcCCCcce-eeecc----cc-c---cccCcHHHHHHHHhHHHHHHHHHHHhhcc
Confidence            4468899999999999999999998876221110 11011    10 1   113578999999999999999988   56


Q ss_pred             CCeeeeccceeeccccccccccCCCcccc--cCCCCc-------EEEEecCCCCC
Q 021549          142 GHDVSSLGFAVHAEEQLDWLGASPDGLLG--CFPGGG-------ILEVKCPYNKG  187 (311)
Q Consensus       142 g~~V~~~Gl~i~~~~~~p~lgASPDGli~--~~~~~~-------iLEIKcP~~~~  187 (311)
                      +..|.+|||++++  ..+++||||||++.  .+++.+       ++||||||++.
T Consensus       181 ~~~V~~cGL~isp--~~g~~GASPDglv~~~~~d~~~~~~p~~~vlEIKCP~kY~  233 (470)
T 2w45_A          181 ASANRQFGFMISP--TDGIFGVSLDLCVNVESQGDFILFTDRSCIYEIKCRFKYL  233 (470)
T ss_dssp             CCEECCCCCEECT--TTSSEEECCSEEEEEEEETTEEEEEEEEEEEEEEECGGGC
T ss_pred             CCeeeccceEEeC--CCCcEEECCCeeeeeeccCCcccccCCccEEEEcCCcccc
Confidence            8899999999986  47999999999994  222333       89999998753

>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A*

Probab=99.64  E-value=7.5e-17  Score=158.06  Aligned_cols=111  Identities=19%  Similarity=0.270  Sum_probs=73.5

Q ss_pred             cCCCCCHHHHHHhhCCCccchHHHhhCCCC-CCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHh---
Q 021549           66 DMLQRSDEWFALRRDKLTTSTFSTALGFWK-GKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSIT---  141 (311)
Q Consensus        66 ~~~q~s~eW~~~R~~rITAS~~a~ilg~~~-~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~---  141 (311)
                      .-|+++++|+.+|.++||||.+..++.... .....+-|     +...   ....++||.||+++|+.|++.+++..   
T Consensus       149 RGQS~N~LW~~LR~GrITAS~~~~v~~k~~s~~~~f~~~-----~~~~---~~~~s~AM~fG~~~E~~AK~li~~~i~~~  220 (508)
T 3fhd_A          149 SSQSLNPVWDALRDGIISSSKFHWAVKQQNTSKKIFSPW-----PITN---NHFVAGPLAFGLRCEEVVKTLLATLLHPD  220 (508)
T ss_dssp             TTGGGSTTHHHHHTTSEEGGGHHHHHHTCSTTSCSCC------------------------CHHHHHHHHHHHHHHTCTT
T ss_pred             hcCccCHHHHHHHcCCeeeccceehhhcccCCCCccccC-----Cccc---cccCCHHHHHhHhhHHHHHHHHHHHhhcC
Confidence            356799999999999999999999874211 01000001     1111   11357999999999999999777654   


Q ss_pred             CCeeeeccceeeccccccccccCCCcccccC---CC-------CcEEEEecCCCC
Q 021549          142 GHDVSSLGFAVHAEEQLDWLGASPDGLLGCF---PG-------GGILEVKCPYNK  186 (311)
Q Consensus       142 g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~---~~-------~~iLEIKcP~~~  186 (311)
                      +..|.+|||++++  ..+++||||||++.++   .|       ..|+||||||++
T Consensus       221 ~~~V~dCGL~Isp--~~Gl~GASPD~l~~~~~~~~G~l~~~~~~~vyEIKCR~KY  273 (508)
T 3fhd_A          221 ETNCLDYGFMQSP--QNGIFGVSLDFAANVKTDTEGRLQFDPNCKVYEIKCRFKY  273 (508)
T ss_dssp             SCEECCCCCEECT--TTSSEEECCSEEEEEEECSSSCEEEEEEEEEEEEEECGGG
T ss_pred             CCeeeeeeeeEeC--CCCcceEcCCeEEeeecCCCCceeecCCceEEEEecCccc
Confidence            5789999999986  4799999999999743   12       458999999875

>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}

Probab=93.99  E-value=0.68  Score=40.09  Aligned_cols=146  Identities=10%  Similarity=-0.018  Sum_probs=84.8

Q ss_pred             hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCC--eee-eccceeeccccccccccCCCcccccC-CC
Q 021549           99 RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGH--DVS-SLGFAVHAEEQLDWLGASPDGLLGCF-PG  174 (311)
Q Consensus        99 ~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~--~V~-~~Gl~i~~~~~~p~lgASPDGli~~~-~~  174 (311)
                      +..+|.+...+....  ....|..|.-|+..-+.+.+.+....|.  +|. ...+.+...  ---+.+-.|++...+ +.
T Consensus        37 pR~~~l~~~~~~~~~--~E~~~~~~~~G~~~H~~~~~~~~~~~~v~~Ev~i~~~~~v~~~--~~~l~GriD~i~~~~~g~  112 (206)
T 4ic1_A           37 PRRVRYESEYKELAI--SQVYAPSAILGDILHLGLESVLKGNFNAETEVETLREINVGGK--VYKIKGRADAIIRNDNGK  112 (206)
T ss_dssp             HHHHHHHHHCHHHHG--GGGGCHHHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEETTE--EEEEEEEEEEEEC----C
T ss_pred             CCHHHHHHHcccccc--ccccChHHHHHHHHHHHHHHHHHhccCccceEEEEEEEEeCCe--EEEEEEEEEEEEEcCCCC
Confidence            567888876322110  0124789999999988888888766542  111 111222111  113667899988753 45


Q ss_pred             CcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEEEEEEcCCCeEEEEE--ECCHHHHHHHHHHHHHHHH
Q 021549          175 GGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRV--IRRRDYWELIHGILQEFWW  252 (311)
Q Consensus       175 ~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~fvv~~~~~~~v~rV--~RD~~~~~~i~~~~~~Fw~  252 (311)
                      ..++|+|+.....+        .....|..|+..|+++.+.+.+.++....+....+.+  +.|++.+..   .+.    
T Consensus       113 ~~ive~Ktg~~~~~--------~~~~~~~~Ql~~Y~~~l~~~~G~L~Y~~~~~~~~v~~~~~l~~~~~~~---~i~----  177 (206)
T 4ic1_A          113 SIVIEIKTSRSDKG--------LPLIHHKMQLQIYLWLFSAEKGILVYITPDRIAEYEINEPLDEATIVR---LAE----  177 (206)
T ss_dssp             CEEEEEECCSCCTT--------SSCHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCCCCHHHHHH---HHH----
T ss_pred             EEEEEEecCCCCcc--------cccHHHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEeCCcCCHHHHHH---HHH----
Confidence            67999999532211        1234577999999999999887766555555555555  355554432   233    


Q ss_pred             HhcCCCCCCCC
Q 021549          253 ENVVPAKEALS  263 (311)
Q Consensus       253 ~~V~p~~~p~~  263 (311)
                      +.+....+|++
T Consensus       178 ~~~~~~~~P~~  188 (206)
T 4ic1_A          178 DTIMLQNSPRF  188 (206)
T ss_dssp             HHHTTCSSSSS
T ss_pred             HHHhcCCCcCC
Confidence            33445556655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1avqa_	228	c.52.1.13 (A:) lambda exonuclease {Bacteriophage l	5e-35

>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: lambda exonuclease
domain: lambda exonuclease
species: Bacteriophage lambda [TaxId: 10710]

 Score =  124 bits (313), Expect = 5e-35
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 24/201 (11%)

Query: 66  DMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRS---------ELWHEKVFSLETQVIE 116
            + Q  D W  LR   +T S     +   +  ++           L  E      T V  
Sbjct: 18  AVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVC----TGVAP 73

Query: 117 NSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGG 176
                A+ WG   E  A   ++  +G +V+         ++      SPD   G    G 
Sbjct: 74  EVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYR--DESMRTACSPD---GLCSDGN 128

Query: 177 ILEVKCPYNK--GKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTP----NGSTI 230
            LE+KCP+            +  +   YM QVQ  M +  +       + P     G   
Sbjct: 129 GLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDPRMKREGLHY 188

Query: 231 FRVIRRRDYWELIHGILQEFW 251
             + R   Y      I+ EF 
Sbjct: 189 VVIERDEKYMASFDEIVPEFI 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1avqa_	228	lambda exonuclease {Bacteriophage lambda [TaxId: 1	100.0

>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: lambda exonuclease
domain: lambda exonuclease
species: Bacteriophage lambda [TaxId: 10710]

Probab=100.00  E-value=2e-45  Score=331.16  Aligned_cols=184  Identities=21%  Similarity=0.259  Sum_probs=161.3

Q ss_pred             hccccccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCC---------hHHHHHHHHcCccccccccchhHHHHHHHHhH
Q 021549           60 ACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKR---------RSELWHEKVFSLETQVIENSKRCAMEWGVLNE  130 (311)
Q Consensus        60 ~~~~~~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s---------~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E  130 (311)
                      +-|++.+++|||+|||++|+++||||+++++||.+++++         ..+||.+|+++..+    +++|.+|+||+.+|
T Consensus        12 ~~~~i~~~~QgS~EWl~~R~~~ItAS~~~~ilg~~~~~~~~~~~~~~~~~~l~~ek~~g~~~----~~~~~a~~~G~~~E   87 (228)
T d1avqa_          12 TGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAP----EVNAKALAWGKQYE   87 (228)
T ss_dssp             HCCCGGGCCTTSHHHHHTTTTCEETTTGGGTTCCCSSSSCCCHHHHHHHHHHHHHHHHSCCC----CCCHHHHHHHHHHH
T ss_pred             cCcccccCCcCCHHHHHHHCCCCCHHHHHHHHCCCccCCcchhhHHHHHHHHHHHHHcCCCC----CCCcHHHHhchhhC
Confidence            347889999999999999999999999999999998864         35799999988653    25799999999999


Q ss_pred             HHHHHHHHhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcc--cCCCCCCCcccHHHHHH
Q 021549          131 AAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEI--ALPWSTVPFYYMPQVQG  208 (311)
Q Consensus       131 ~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~--~~~~~~iP~~Y~~QVQ~  208 (311)
                      |.|++.|++.+|..|.++|++.++  ++|||+|||||++.++   ++||||||++..+...  ....+.+|.+|++|||+
T Consensus        88 p~a~~~~~~~~g~~v~e~g~~~~~--~~~~l~aSpDGl~~~~---~~lEIKcp~~~~~~~~~~~~~~~~ip~~Y~~QvQ~  162 (228)
T d1avqa_          88 NDARTLFEFTSGVNVTESPIIYRD--ESMRTACSPDGLCSDG---NGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQY  162 (228)
T ss_dssp             HHHHHHHHHHHCCCEECCCCEESS--TTCSEEECCSEEETTS---CEEEEECCSSHHHHHHHHHHCGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhceEEEeeceEEec--ccceeeeccCcccccC---ceEEEEcccchhhhhhhhccccCCCCHHHHHHHHH
Confidence            999999999999999999998875  5899999999999875   7899999987643211  01235799999999999


Q ss_pred             HhHhhcCCcEEEEEEcC----CCeEEEEEECCHHHHHHHHHHHHHHHH
Q 021549          209 QMEILDREWVDLYCWTP----NGSTIFRVIRRRDYWELIHGILQEFWW  252 (311)
Q Consensus       209 qM~Vtg~~~~~fvv~~~----~~~~v~rV~RD~~~~~~i~~~~~~Fw~  252 (311)
                      ||+|+|+++|+|++|.+    +++.+++|+||+++++.|++++.+||.
T Consensus       163 qM~vtg~~~~~fv~~~p~~~~~~~~~~~i~rD~~~i~~l~~~~~~Fw~  210 (228)
T d1avqa_         163 SMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE  210 (228)
T ss_dssp             HHHHHTCSEEEEEEECTTCSSCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEEccCCCCCceEEEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999975    368999999999999999999999993