Citrus Sinensis ID: 021550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | 2.2.26 [Sep-21-2011] | |||||||
| Q96FX7 | 289 | tRNA (adenine(58)-N(1))-m | yes | no | 0.884 | 0.951 | 0.460 | 2e-65 | |
| Q6AY46 | 290 | tRNA (adenine(58)-N(1))-m | yes | no | 0.887 | 0.951 | 0.453 | 3e-64 | |
| Q80XC2 | 290 | tRNA (adenine(58)-N(1))-m | yes | no | 0.887 | 0.951 | 0.450 | 6e-64 | |
| A6H791 | 285 | tRNA (adenine(58)-N(1))-m | yes | no | 0.877 | 0.957 | 0.44 | 3e-62 | |
| Q86JJ0 | 312 | tRNA (adenine(58)-N(1))-m | yes | no | 0.945 | 0.942 | 0.422 | 6e-58 | |
| P0CS08 | 433 | tRNA (adenine(58)-N(1))-m | yes | no | 0.729 | 0.524 | 0.451 | 2e-52 | |
| P0CS09 | 433 | tRNA (adenine(58)-N(1))-m | N/A | no | 0.729 | 0.524 | 0.451 | 2e-52 | |
| Q6CN53 | 407 | tRNA (adenine(58)-N(1))-m | yes | no | 0.935 | 0.714 | 0.351 | 2e-50 | |
| Q5A416 | 335 | tRNA (adenine(58)-N(1))-m | N/A | no | 0.752 | 0.698 | 0.421 | 6e-47 | |
| P46959 | 383 | tRNA (adenine(58)-N(1))-m | yes | no | 0.749 | 0.608 | 0.411 | 2e-46 |
| >sp|Q96FX7|TRM61_HUMAN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 185/302 (61%), Gaps = 27/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G GT G +G +P S P EA GHTGYLT
Sbjct: 242 TVSLPPPDLGTGTDG----------------PAGSDTSPFRS---GTPMKEAVGHTGYLT 282
Query: 304 FA 305
FA
Sbjct: 283 FA 284
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Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 0 |
| >sp|Q6AY46|TRM61_RAT tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 186/302 (61%), Gaps = 26/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
++APTGH++T +FH+QRA ARE+F++ VS +VTV +D+ GF +AD++FLD
Sbjct: 124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G G+ GS P S P E GHTGYLT
Sbjct: 242 TVSLPLPDLGADDLEGNVGS---------------DATPFRS---GTPMKETVGHTGYLT 283
Query: 304 FA 305
FA
Sbjct: 284 FA 285
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Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|Q80XC2|TRM61_MOUSE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 185/302 (61%), Gaps = 26/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+VAPTGH++T +FH+QRA ARE+F+ +S +VTV +D+ GF +AD++FLD
Sbjct: 124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G +L G +P S P E GHTGYLT
Sbjct: 242 TVSLPLPDLG---------------ANNLETNMGSDASPFRS---GTPMKETVGHTGYLT 283
Query: 304 FA 305
FA
Sbjct: 284 FA 285
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Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|A6H791|TRM61_BOVIN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 181/300 (60%), Gaps = 27/300 (9%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAACGFSELSTLEVLPQVYNVR 241
Query: 247 QWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMA-RPNGEARGHTGYLTFA 305
+ G + P+ + + P E GHTGYLTFA
Sbjct: 242 TVSLP---------------------VPDLGARPGPDAAPFRSGTPMKETVGHTGYLTFA 280
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Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 191/303 (63%), Gaps = 9/303 (2%)
Query: 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFV 71
+ IKEGD V++Y D M + + N+ + ++FG+++H + IGK +GS + S+ G GF
Sbjct: 5 NKIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFC 64
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
+++A TPELW++ L HRTQIL+ DIS +I LEL G +ESGTGSGSL++S+AR +A
Sbjct: 65 HVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIA 124
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDL 189
P GH++TF+FHE+R AR+DF+ G+ ++TV RD G +GF + + D++FLDL
Sbjct: 125 PKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDL 184
Query: 190 PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL-RLNFTDIRTFEILLRTYEIRQW 248
P PW AI +A ++ +LCSFSPCIEQVQ +C L F +I+T E+L+RT++ R
Sbjct: 185 PSPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKLADSKFQEIKTIEVLIRTFDTRLQ 244
Query: 249 RADCGQGTGGGSAGSIRHKRKQHLIEGSGE-----KENPNNSTVMARPNGEARGHTGYLT 303
+ T + + ++ E G+ E ++++P EARGHTGYLT
Sbjct: 245 EYEELNLTNPYIDNNNNNNNNNNIEENRGKFEIGGIEGLKKDKLLSKPFTEARGHTGYLT 304
Query: 304 FAR 306
FAR
Sbjct: 305 FAR 307
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Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|P0CS08|TRM61_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TRM61 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
AIP A K L++D I +C FSPC+EQV ++ LR F+DI T E+L+RT+E+
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLRSEGFSDISTQEVLIRTHEL 245
|
Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|P0CS09|TRM61_CRYNB tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TRM61 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
AIP A K L++D I +C FSPC+EQV ++ LR F+DI T E+L+RT+E+
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLRSEGFSDISTQEVLIRTHEL 245
|
Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|Q6CN53|TRM61_KLULA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TRM61 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 67/358 (18%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDLV+ + D +K + V F R+GAF HSD IGKPFGS + SN
Sbjct: 7 YKDTIKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSN 66
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
+ GF+++L PTPELW++ L HRTQI+Y D S+++ +E P V+E+GTGSGS + +
Sbjct: 67 RFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAF 126
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFP--------D 176
AR+ GH+++++FHE R A+++F+ G+ + T+ RD+ GF
Sbjct: 127 ARSA---GHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSH 183
Query: 177 EFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
EF G AD IFLDLP PW AIP+ ++ ++ LC FSPCIEQV ++ E+L
Sbjct: 184 EFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFSPCIEQVDKTLEAL 243
Query: 227 RLN-FTDIRTFEILLRTYEIRQW--------------------------RADCGQGTGGG 259
+ D++T EI R YE R+ + + Q + G
Sbjct: 244 EEEGWQDVQTVEIQGRQYEARRQMVRRLDDAIERLRDVKRRKHEGVEKRQKNVEQTSNNG 303
Query: 260 SA-------GSIRHKRKQHLI---EGSGEKENPNNS--TVMARPNGEARGHTGYLTFA 305
S+ ++H K H +GS KE +N T +++ E + HT +LTFA
Sbjct: 304 SSVEATESDKDLKHTEKTHFNPFGKGSRVKEGDSNFEWTQVSKVELEIKSHTSFLTFA 361
|
Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|Q5A416|TRM61_CANAL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRM61 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 142/242 (58%), Gaps = 8/242 (3%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
+ I+EGDLV+ Y +K + V + F R+G F+H IG +G + KG GF
Sbjct: 6 YKNYIEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
++LL PTPELWTL L HRTQI+Y D S++I L + PG V+E+GTGS S T S AR V
Sbjct: 66 IHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTV 125
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDL 189
+G V+T++FHE R A+++ E + + T+ RD+ GF D S D +FLDL
Sbjct: 126 TLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDL 184
Query: 190 PQPWLAIPSAKKML---KQDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
P PW AIP ++ K GI C FSPCIEQV R+ +L N +T+I E+ + +
Sbjct: 185 PSPWDAIPHLDSVISTSKAAGICC-FSPCIEQVDRTVRALEENGWTEIEIVEVAAKRWSA 243
Query: 246 RQ 247
R+
Sbjct: 244 RK 245
|
Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
| >sp|P46959|TRM61_YEAST tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 149/260 (57%), Gaps = 27/260 (10%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDL +++ D +K V++ F R+G+F H D IGKP+GS + SN
Sbjct: 9 YKDLIKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSN 68
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
K FV++L PTPELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 69 KFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAF 128
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGF--------PDE 177
AR+V GH+++F+FH R A E+F+ G + VT+ RD+ GF E
Sbjct: 129 ARSV---GHLFSFEFHHIRYEQALEEFKEHGLIDDNVTITHRDVCQGGFLIKKGDTTSYE 185
Query: 178 F-------SGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL-R 227
F S A+ +FLDLP PW AIP ++ D LC FSPCIEQV ++ + L +
Sbjct: 186 FGNNETAASLNANVVFLDLPAPWDAIPHLDSVISVDEKVGLCCFSPCIEQVDKTLDVLEK 245
Query: 228 LNFTDIRTFEILLRTYEIRQ 247
+TD+ EI R YE R+
Sbjct: 246 YGWTDVEMVEIQGRQYESRR 265
|
Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. GCD14 is also required for repression of GCN4 mRNA translation by the upstream open reading frames (uORFs) under conditions of amino acid sufficiency. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| 255560858 | 311 | tRNA, putative [Ricinus communis] gi|223 | 1.0 | 1.0 | 0.810 | 1e-150 | |
| 225452408 | 324 | PREDICTED: tRNA (adenine-N(1)-)-methyltr | 1.0 | 0.959 | 0.807 | 1e-147 | |
| 449435564 | 310 | PREDICTED: tRNA (adenine(58)-N(1))-methy | 0.996 | 1.0 | 0.787 | 1e-142 | |
| 224142479 | 311 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.758 | 1e-136 | |
| 18417421 | 318 | tRNA (adenine-N1-)-methyltransferase [Ar | 1.0 | 0.977 | 0.716 | 1e-132 | |
| 356549282 | 309 | PREDICTED: tRNA (adenine-N(1)-)-methyltr | 0.980 | 0.987 | 0.742 | 1e-129 | |
| 7573309 | 370 | putative protein [Arabidopsis thaliana] | 0.977 | 0.821 | 0.707 | 1e-127 | |
| 124360739 | 307 | SAM (and some other nucleotide) binding | 0.983 | 0.996 | 0.720 | 1e-125 | |
| 147811544 | 777 | hypothetical protein VITISV_033584 [Viti | 0.926 | 0.370 | 0.720 | 1e-125 | |
| 297807479 | 375 | hypothetical protein ARALYDRAFT_325929 [ | 0.977 | 0.810 | 0.683 | 1e-121 |
| >gi|255560858|ref|XP_002521442.1| tRNA, putative [Ricinus communis] gi|223539341|gb|EEF40932.1| tRNA, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/311 (81%), Positives = 280/311 (90%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
ML TDPT+++SFTRCI +GDLVIVYE+HD MKA+KVC+ S QNRFG FKHSDWIGKPFG
Sbjct: 1 MLHTDPTRRLSFTRCITDGDLVIVYEKHDTMKAIKVCETSVLQNRFGVFKHSDWIGKPFG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S VFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISF+I YLE+VPGCLVLESGTGSG
Sbjct: 61 SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFLITYLEIVPGCLVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE+TGVSS VTVGVRDIQG+GFPDE+SG
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFEKTGVSSLVTVGVRDIQGEGFPDEYSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
L DS+FLDLPQPWLAIPSA KMLKQDG+LCSFSPCIEQVQRSCE+LR NFTDIRTFE+LL
Sbjct: 181 LVDSVFLDLPQPWLAIPSAAKMLKQDGVLCSFSPCIEQVQRSCETLRSNFTDIRTFEVLL 240
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RTYE+R+ + DCGQG G S GS +KR+Q EGS + + ++ +MARP G++RGHTG
Sbjct: 241 RTYEVREVKMDCGQGEEGISLGSPPYKRRQRSSEGSNVQNSSSSPVIMARPCGDSRGHTG 300
Query: 301 YLTFARLKCLS 311
YLTFARLKCLS
Sbjct: 301 YLTFARLKCLS 311
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452408|ref|XP_002273877.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/311 (80%), Positives = 271/311 (87%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLP D K+ISF RCI +GDLVIVYERHD MKAVKVC+ S QNRFG FKHSDWIGKPFG
Sbjct: 1 MLPIDAEKRISFKRCISDGDLVIVYERHDNMKAVKVCEGSTLQNRFGVFKHSDWIGKPFG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S V SNKGGFVYLLAPTPELWTLVLSHRTQILYIADIS VIMYLE++PGCLVLESGTGSG
Sbjct: 61 SKVLSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISLVIMYLEIIPGCLVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAP GHVYTFDFHEQRAASAREDFE+ G+SSFVTVGVRDIQG+GFPDEFSG
Sbjct: 121 SLTTSLARAVAPNGHVYTFDFHEQRAASAREDFEKIGLSSFVTVGVRDIQGEGFPDEFSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLAIPSA KMLK+DG+LCSFSPCIEQVQRS E+L NFTDIRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAIPSAGKMLKEDGVLCSFSPCIEQVQRSSETLTSNFTDIRTFEVLL 240
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RTYE+R+ + DC QG GG G KR+Q E S E E P ++TVMARP EARGHTG
Sbjct: 241 RTYEVREGKMDCSQGNEGGFLGPRPGKRRQRSGEASNEGEIPTSTTVMARPAAEARGHTG 300
Query: 301 YLTFARLKCLS 311
+LTFARLKCLS
Sbjct: 301 FLTFARLKCLS 311
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435564|ref|XP_004135565.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like [Cucumis sativus] gi|449528672|ref|XP_004171327.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/311 (78%), Positives = 271/311 (87%), Gaps = 1/311 (0%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLPTD K ISFTR I++GDLVIVYERHD MKAVKVC S QNRFG FKHSDWIGKPFG
Sbjct: 1 MLPTDELKSISFTRSIRDGDLVIVYERHDIMKAVKVCDGSTLQNRFGVFKHSDWIGKPFG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM+LE+VPGCLVLESGTGSG
Sbjct: 61 SKALSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMFLEIVPGCLVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAPTGHVYTFDFHEQRA+SAREDFE+TG++S VTVGVRDIQGQGFP+EF G
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHEQRASSAREDFEKTGLTSLVTVGVRDIQGQGFPEEFVG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLAIPSA++MLKQDG+LCSFSPCIEQVQRS E+LR FTDIRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAIPSAERMLKQDGMLCSFSPCIEQVQRSVETLRSKFTDIRTFEVLL 240
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RTYE+++ R + Q GGGS G KR+ E S + +N +++TVM RP EARGHTG
Sbjct: 241 RTYEVKEGRTESNQVDGGGSVGLPPCKRRLRSKE-SDDMDNESSTTVMVRPCSEARGHTG 299
Query: 301 YLTFARLKCLS 311
YLTFARL+CLS
Sbjct: 300 YLTFARLRCLS 310
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142479|ref|XP_002324584.1| predicted protein [Populus trichocarpa] gi|222866018|gb|EEF03149.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/311 (75%), Positives = 266/311 (85%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
ML +D KK+SF R IK+GDLVIVYE+ D MKAVKVC+ S QNRFG FKHSDWIGKPFG
Sbjct: 1 MLCSDGEKKLSFCRSIKDGDLVIVYEKRDVMKAVKVCETSVLQNRFGVFKHSDWIGKPFG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S V SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISF+I YLE+VPG LVLESGTGSG
Sbjct: 61 SKVLSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFLITYLEIVPGSLVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAPTGHVYTFDFH+QRAASAREDF+ TGV S VTVG RDIQG+GFPDE+SG
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHQQRAASAREDFQSTGVGSLVTVGARDIQGEGFPDEYSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLAI SA KMLKQDG LCSFSPCIEQVQR+CE+L+ NF DIRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAILSAGKMLKQDGTLCSFSPCIEQVQRTCEALKSNFRDIRTFEVLL 240
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RT+E+ + + D QG G S GS +KR+Q EGS +++ ++ T+ ARP +ARGHTG
Sbjct: 241 RTFEVHEGKMDSCQGDEGVSVGSPPYKRRQRSSEGSIVQDSSSSPTIKARPCADARGHTG 300
Query: 301 YLTFARLKCLS 311
YLTF+RLKCLS
Sbjct: 301 YLTFSRLKCLS 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417421|ref|NP_568302.1| tRNA (adenine-N1-)-methyltransferase [Arabidopsis thaliana] gi|28393527|gb|AAO42184.1| unknown protein [Arabidopsis thaliana] gi|28827644|gb|AAO50666.1| unknown protein [Arabidopsis thaliana] gi|332004669|gb|AED92052.1| tRNA (adenine-N1-)-methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/318 (71%), Positives = 264/318 (83%), Gaps = 7/318 (2%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLPT+ K SF RCI++GDLVIVYERHD MK VKV ++ QNRFG +KHSDWIGKP G
Sbjct: 1 MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
+ VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61 TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F +IRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLL 240
Query: 241 RTYEIRQWRAD----CGQGTGGGSAGSIRHKRKQHLIEG-SGEKENPNN--STVMARPNG 293
RTYE+++ + D G+ + G KRK E + ++N +N S VMARP
Sbjct: 241 RTYEVKEVKMDTSSMVGESHEEDNEGMRPCKRKHRSNENDTVSQDNSSNASSVVMARPCS 300
Query: 294 EARGHTGYLTFARLKCLS 311
EARGHTGYLTFARL+CL+
Sbjct: 301 EARGHTGYLTFARLQCLA 318
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549282|ref|XP_003543023.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/315 (74%), Positives = 262/315 (83%), Gaps = 10/315 (3%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
ML P KK+SF R I GDLVIVYERHD MKAV V + S QNRFG FKHS+WIGKPFG
Sbjct: 1 MLALHPAKKLSFNRPINNGDLVIVYERHDIMKAVTVSEGSVLQNRFGVFKHSEWIGKPFG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S V S+KGGFVYLLAPTPELWTLVL+HRTQILYIADISFVIMYLE+VPGC+VLESGTGSG
Sbjct: 61 SKVVSSKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAP+GHVYTFDFHEQRAASAR DFERTG+SS VTV VRDIQG+GFPD F+G
Sbjct: 121 SLTTSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDTFTG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
+ADS+FLDLPQPWL IPSA K+L+ DG LCSFSPCIEQVQR+CE+LR FTDIRTFE+LL
Sbjct: 181 MADSVFLDLPQPWLVIPSAAKVLRHDGTLCSFSPCIEQVQRTCETLRTCFTDIRTFEVLL 240
Query: 241 RTYEIRQWRAD--CGQGTGGGSAGSIRHKRKQHLIEGSG--EKENPNNSTVMARPNGEAR 296
RTYE+R+ + CG G GS+ KR+Q +GS +P+ S+VMARP GEAR
Sbjct: 241 RTYEVREEKMQSLCGDGN-----GSLPSKRRQ-CSDGSYVLSSSSPSISSVMARPCGEAR 294
Query: 297 GHTGYLTFARLKCLS 311
GHTGYLTFAR+K LS
Sbjct: 295 GHTGYLTFARVKSLS 309
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7573309|emb|CAB87627.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/311 (70%), Positives = 255/311 (81%), Gaps = 7/311 (2%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLPT+ K SF RCI++GDLVIVYERHD MK VKV ++ QNRFG +KHSDWIGKP G
Sbjct: 1 MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
+ VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61 TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F +IRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLL 240
Query: 241 RTYEIRQWRAD----CGQGTGGGSAGSIRHKRKQHLIEGSG-EKENPNN--STVMARPNG 293
RTYE+++ + D G+ + G KRK E ++N +N S VMARP
Sbjct: 241 RTYEVKEVKMDTSSMVGESHEEDNEGMRPCKRKHRSNENDTVSQDNSSNASSVVMARPCS 300
Query: 294 EARGHTGYLTF 304
EARGHTGY+ +
Sbjct: 301 EARGHTGYIAW 311
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124360739|gb|ABN08716.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/311 (72%), Positives = 256/311 (82%), Gaps = 5/311 (1%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
+L ++P K I+F R I +G+LVIVY +H MKAV V + S FQN GAFKHSDWIGKPFG
Sbjct: 2 LLTSNPEKTIAFNRKIHDGNLVIVYVKHGNMKAVTVSEGSVFQNSLGAFKHSDWIGKPFG 61
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
S VF+NKG FVYLLAPTPELWTLVL+HRTQILYI DISFVIMYLE+V GCLVLESGTGSG
Sbjct: 62 SKVFNNKGDFVYLLAPTPELWTLVLNHRTQILYIPDISFVIMYLEIVAGCLVLESGTGSG 121
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARA+AP GHVYTFDFHEQRAASAR+DFER G+SS ++ GVRDIQG+GFPDE +
Sbjct: 122 SLTTSLARAIAPNGHVYTFDFHEQRAASARDDFERIGLSSLISCGVRDIQGEGFPDELNE 181
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLAIPSA KMLKQDG CSFSPCIEQVQRSC++L+ FTDIRTFE+LL
Sbjct: 182 LADSVFLDLPQPWLAIPSAAKMLKQDGTFCSFSPCIEQVQRSCDALQSCFTDIRTFEVLL 241
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RTYE+R+ + + G GS+ KR+Q +G+ NP S+VMARP EARGHTG
Sbjct: 242 RTYEVREVKT---KSFHGDDNGSLPCKRRQ-CSDGNYVLSNP-TSSVMARPCDEARGHTG 296
Query: 301 YLTFARLKCLS 311
YLTFARLKC S
Sbjct: 297 YLTFARLKCFS 307
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811544|emb|CAN61088.1| hypothetical protein VITISV_033584 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/308 (72%), Positives = 243/308 (78%), Gaps = 20/308 (6%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLP D K+ISF RCI +GDLVIVYERHD MKAVKVC+ S QNRFG FKHSDWIGKPFG
Sbjct: 88 MLPIDNEKRISFKRCISDGDLVIVYERHDNMKAVKVCEGSTLQNRFGVFKHSDWIGKPFG 147
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
+G TQILYIADIS VIMYLE++PGCLVLESGTGSG
Sbjct: 148 FQGVEQQG--------------------TQILYIADISLVIMYLEIIPGCLVLESGTGSG 187
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SLTTSLARAVAP GHVYTFDFHEQRAASAREDFE+ G+SSFVTVGVRDIQG+GFPDEFSG
Sbjct: 188 SLTTSLARAVAPXGHVYTFDFHEQRAASAREDFEKIGLSSFVTVGVRDIQGEGFPDEFSG 247
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLAIPSA KMLK+DG+LCSFSPCIEQVQRS E+L NFTDIRTFE+LL
Sbjct: 248 LADSVFLDLPQPWLAIPSAGKMLKEDGVLCSFSPCIEQVQRSSETLTSNFTDIRTFEVLL 307
Query: 241 RTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTG 300
RTYE+R+ + DC QG GG G KR+Q E S E E P ++TVMARP EARGHTG
Sbjct: 308 RTYEVREGKMDCSQGNEGGFLGPRPGKRRQRSGEASNEGEIPTSTTVMARPAAEARGHTG 367
Query: 301 YLTFARLK 308
+LTFARL
Sbjct: 368 FLTFARLN 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807479|ref|XP_002871623.1| hypothetical protein ARALYDRAFT_325929 [Arabidopsis lyrata subsp. lyrata] gi|297317460|gb|EFH47882.1| hypothetical protein ARALYDRAFT_325929 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/316 (68%), Positives = 256/316 (81%), Gaps = 12/316 (3%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLPT+ K +SF R I++GDLVIVYERHD MK VKV +++ QNRFG +KHSDWIGKP G
Sbjct: 1 MLPTESKKALSFKRYIEDGDLVIVYERHDVMKPVKVSKDAVLQNRFGVYKHSDWIGKPLG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG 120
+ VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+VLESGTGSG
Sbjct: 61 TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120
Query: 121 SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
SL+TSLARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN----FTDIRTF 236
LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR + F++IRTF
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDFIGKFSEIRTF 240
Query: 237 EILLRTYEIRQWRAD----CGQGTGGGSAGSIRHKRKQHLIEG-SGEKENPNNST--VMA 289
E+LLRTYE+++ + D G+ + G KRK E + ++N +N+T VMA
Sbjct: 241 EVLLRTYEVKEVKMDTSSMVGESHEEDNEGMRPCKRKHRSNEDVTVSQDNSSNATSVVMA 300
Query: 290 RPNGEARG-HTGYLTF 304
RP EAR GY+ +
Sbjct: 301 RPCSEARAVLAGYIAW 316
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| TAIR|locus:2222682 | 318 | AT5G14600 [Arabidopsis thalian | 1.0 | 0.977 | 0.672 | 7.6e-112 | |
| ZFIN|ZDB-GENE-040718-5 | 315 | trmt61a "tRNA methyltransferas | 0.755 | 0.746 | 0.479 | 4.8e-60 | |
| UNIPROTKB|F1NZ19 | 314 | TRMT61A "Uncharacterized prote | 0.945 | 0.936 | 0.440 | 2.5e-58 | |
| UNIPROTKB|A6H791 | 285 | TRMT61A "tRNA (adenine(58)-N(1 | 0.755 | 0.824 | 0.462 | 6.1e-56 | |
| UNIPROTKB|F1MDU6 | 285 | TRMT61A "tRNA (adenine(58)-N(1 | 0.755 | 0.824 | 0.462 | 9.9e-56 | |
| DICTYBASE|DDB_G0271512 | 312 | trmt61 "tRNA(m1A58)-methyltran | 0.942 | 0.939 | 0.387 | 2.6e-54 | |
| MGI|MGI:2443487 | 290 | Trmt61a "tRNA methyltransferas | 0.897 | 0.962 | 0.421 | 3.4e-54 | |
| RGD|1359191 | 290 | Trmt61a "tRNA methyltransferas | 0.893 | 0.958 | 0.423 | 5.5e-54 | |
| UNIPROTKB|Q96FX7 | 289 | TRMT61A "tRNA (adenine(58)-N(1 | 0.890 | 0.958 | 0.426 | 8.9e-54 | |
| UNIPROTKB|J9NY29 | 289 | TRMT61A "Uncharacterized prote | 0.890 | 0.958 | 0.42 | 8e-53 |
| TAIR|locus:2222682 AT5G14600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 214/318 (67%), Positives = 247/318 (77%)
Query: 1 MLPTDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFG 60
MLPT+ K SF RCI++GDLVIVYERHD MK VKV ++ QNRFG +KHSDWIGKP G
Sbjct: 1 MLPTESKKAFSFKRCIEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLG 60
Query: 61 SMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXX 120
+ VFSNKG FVYLLAPTPELWTLVLSHRTQILYIADISFV+MYLE+VPGC+V
Sbjct: 61 TKVFSNKGKFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSG 120
Query: 121 XXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180
ARAVAPTGHVY+FDFHEQRA SAREDFE+TG+SS VTV VRDIQG+GFP++ SG
Sbjct: 121 SLSTSLARAVAPTGHVYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSG 180
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILL 240
LADS+FLDLPQPWLA+PSA KMLKQDG+LCSFSPCIEQVQR+CE LR +F +IRTFE+LL
Sbjct: 181 LADSVFLDLPQPWLAVPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLL 240
Query: 241 RTYEIRQWRADCXXXXXXXXXXS---IRH-KRKQHLIEGSG-EKENPNN--STVMARPNG 293
RTYE+++ + D +R KRK E ++N +N S VMARP
Sbjct: 241 RTYEVKEVKMDTSSMVGESHEEDNEGMRPCKRKHRSNENDTVSQDNSSNASSVVMARPCS 300
Query: 294 EARGHTGYLTFARLKCLS 311
EARGHTGYLTFARL+CL+
Sbjct: 301 EARGHTGYLTFARLQCLA 318
|
|
| ZFIN|ZDB-GENE-040718-5 trmt61a "tRNA methyltransferase 61 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 115/240 (47%), Positives = 158/240 (65%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+ ++ I+EGD+VI++ HD M +KV + Q R+G +HS D IG+ FGS V +KG
Sbjct: 4 VEYSELIQEGDVVIIFMGHDSMMPIKVQSGAQTQTRYGVIRHSSDLIGQRFGSKVTCSKG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + + LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTINLPHRTQILYTTDIANITLMLELKPGSVVCESGTGSGSLSHSILR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH QRA A ++F+ VS VTV +D+ GF +G+AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHSQRAEKAMQEFKEHKVSHLVTVRNQDVCKDGFG--ITGVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW AI AKK LK + G LCSFSPCIEQVQR+CE+L + F +I T E+LLR +++R
Sbjct: 182 IPSPWEAISHAKKALKYKGGRLCSFSPCIEQVQRTCEALLDHGFEEICTLEVLLRVHDVR 241
|
|
| UNIPROTKB|F1NZ19 TRMT61A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 133/302 (44%), Positives = 169/302 (55%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+ + IK+GD IV+ H+ M VKV Q ++G +HS D IGK +GS V +KG
Sbjct: 10 VEYGDTIKDGDTAIVFLGHESMFPVKVQHGGVTQTKYGVIRHSTDLIGKKYGSKVTCSKG 69
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+V++L PTPELWT+ L HRTQILY DIS + M LEL PG +V R
Sbjct: 70 GWVFILHPTPELWTVNLPHRTQILYSTDISVITMMLELKPGSIVCESGTGSGSLSHALIR 129
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
VAPTGH+YT +FH+QRA A+E+F GV VTV +D+ GF SG+AD++FLD
Sbjct: 130 TVAPTGHLYTVEFHQQRAEKAKEEFREHGVEHLVTVTNQDVCKNGFG--VSGIADAVFLD 187
Query: 189 LPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIR 246
+P PW AI AK LK +G +CSFSPCIEQVQR+C ++ FT+I T EILLR Y +R
Sbjct: 188 IPSPWEAIGHAKSALKAEGGRICSFSPCIEQVQRTCLAMEEYGFTEINTLEILLRVYNVR 247
Query: 247 QWRADCXXXXXXXXXXSIRHKRKQHLIEGSGEKENPNNSTVMAR---PNGEARGHTGYLT 303
S + N TV + P E GHTGYLT
Sbjct: 248 TISLQIPDLGKAAEDNSSAGFDSSNPSNQGSPGTNLQQGTVQFKSGVPLKEMVGHTGYLT 307
Query: 304 FA 305
FA
Sbjct: 308 FA 309
|
|
| UNIPROTKB|A6H791 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 111/240 (46%), Positives = 151/240 (62%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGFG--VSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAACGFSELSTLEVLPQVYNVR 241
|
|
| UNIPROTKB|F1MDU6 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 111/240 (46%), Positives = 150/240 (62%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQPGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGFG--VSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAACGFSELSTLEVLPQVYNVR 241
|
|
| DICTYBASE|DDB_G0271512 trmt61 "tRNA(m1A58)-methyltransferase subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 117/302 (38%), Positives = 176/302 (58%)
Query: 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVY 72
+ IKEGD V++Y D M + + N+ + ++FG+++H + IGK +GS + S+ G GF +
Sbjct: 6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCH 65
Query: 73 LLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAP 132
++A TPELW++ L HRTQIL+ DIS +I LEL G AR +AP
Sbjct: 66 VIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAP 125
Query: 133 TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDLP 190
GH++TF+FHE+R AR+DF+ G+ ++TV RD G +GF + + D++FLDLP
Sbjct: 126 KGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDLP 185
Query: 191 QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWR 249
PW AI +A ++ +LCSFSPCIEQVQ +C L F +I+T E+L+RT++ R
Sbjct: 186 SPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKLADSKFQEIKTIEVLIRTFDTRLQE 245
Query: 250 ADCXXXXXXXXXXSIRHKRKQHLIEGSGEKE-----NPNNSTVMARPNGEARGHTGYLTF 304
+ + + ++ E G+ E ++++P EARGHTGYLTF
Sbjct: 246 YEELNLTNPYIDNNNNNNNNNNIEENRGKFEIGGIEGLKKDKLLSKPFTEARGHTGYLTF 305
Query: 305 AR 306
AR
Sbjct: 306 AR 307
|
|
| MGI|MGI:2443487 Trmt61a "tRNA methyltransferase 61A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 126/299 (42%), Positives = 172/299 (57%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+VAPTGH++T +FH+QRA ARE+F+ +S +VTV +D+ GF +AD++FLD
Sbjct: 124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGFG--VVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWRADCXXXXXXXXXXSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFA 305
+ +L G +P S P E GHTGYLTFA
Sbjct: 242 ------------TVSLPLPDLGANNLETNMGSDASPFRS---GTPMKETVGHTGYLTFA 285
|
|
| RGD|1359191 Trmt61a "tRNA methyltransferase 61 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 127/300 (42%), Positives = 173/300 (57%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
++APTGH++T +FH+QRA ARE+F++ VS +VTV +D+ GF +AD++FLD
Sbjct: 124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGFG--VVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWRADCXXXXXXXXXXSIRHKRKQHLIEGS-GEKENPNNSTVMARPNGEARGHTGYLTFA 305
+EG+ G P S P E GHTGYLTFA
Sbjct: 242 TVSLPLPDLGADD-------------LEGNVGSDATPFRS---GTPMKETVGHTGYLTFA 285
|
|
| UNIPROTKB|Q96FX7 TRMT61A "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 128/300 (42%), Positives = 172/300 (57%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGFG--VSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNVR 241
Query: 247 QWRADCXXXXXXXXXXSIRHKRKQHLIEG-SGEKENPNNSTVMARPNGEARGHTGYLTFA 305
S+ +G +G +P S P EA GHTGYLTFA
Sbjct: 242 --------------TVSLPPPDLGTGTDGPAGSDTSPFRS---GTPMKEAVGHTGYLTFA 284
|
|
| UNIPROTKB|J9NY29 TRMT61A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 126/300 (42%), Positives = 173/300 (57%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ I+EGD I+ H M A++V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIQEGDTAILSLGHGAMVALRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCASGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRNQDVCRSGFG--VSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNVR 241
Query: 247 QWRADCXXXXXXXXXXSIRHKRKQHLIEGSGEKENPNNSTVMA-RPNGEARGHTGYLTFA 305
S+ L G + +P+ S + P EA GHTGYLTFA
Sbjct: 242 --------------TVSLP---APDLGASLGPEASPDASPFRSGTPMKEAVGHTGYLTFA 284
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q86JJ0 | TRM61_DICDI | 2, ., 1, ., 1, ., 2, 2, 0 | 0.4224 | 0.9453 | 0.9423 | yes | no |
| Q96FX7 | TRM61_HUMAN | 2, ., 1, ., 1, ., 2, 2, 0 | 0.4602 | 0.8842 | 0.9515 | yes | no |
| Q80XC2 | TRM61_MOUSE | 2, ., 1, ., 1, ., 2, 2, 0 | 0.4503 | 0.8874 | 0.9517 | yes | no |
| Q6AY46 | TRM61_RAT | 2, ., 1, ., 1, ., 2, 2, 0 | 0.4536 | 0.8874 | 0.9517 | yes | no |
| A6H791 | TRM61_BOVIN | 2, ., 1, ., 1, ., 2, 2, 0 | 0.44 | 0.8778 | 0.9578 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.36 | 0.914 |
| 3rd Layer | 2.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| pfam08704 | 309 | pfam08704, GCD14, tRNA methyltransferase complex G | 1e-151 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 3e-80 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 3e-11 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 2e-07 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 2e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 6e-07 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 6e-07 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-06 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-06 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 2e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-05 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 4e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 4e-04 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 0.001 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 0.002 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.002 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 0.002 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.004 |
| >gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Score = 425 bits (1095), Expect = e-151
Identities = 160/306 (52%), Positives = 198/306 (64%), Gaps = 8/306 (2%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGG 69
+S+ I+EGD VIVY HD M + V + Q ++G +HSD IGK +GS V S+KGG
Sbjct: 4 LSYKDRIEEGDTVIVYLGHDSMVPLTVERGGTTQTKYGVLRHSDIIGKRYGSKVSSSKGG 63
Query: 70 FVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARA 129
FVY+L PTPELWTL L HRTQILY DIS +IM LEL PG +V ESGTGSGSL+ ++AR
Sbjct: 64 FVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIART 123
Query: 130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189
VAPTGH+YTF+FHEQRA ARE+F G+ S VTV RD+ GF E S AD++FLDL
Sbjct: 124 VAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDL 183
Query: 190 PQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQ 247
P PW AIP A K LK + G LCSFSPCIEQVQR+C +L L FT+I T E+L R Y++R
Sbjct: 184 PAPWEAIPHAAKALKVEGGRLCSFSPCIEQVQRTCLALAALGFTEIETIEVLPRQYDVRT 243
Query: 248 WR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNST---VMARPNGEARGHTGY 301
D G+ T + K+ + E+ + + +P EARGHTGY
Sbjct: 244 VSLPVIDLGRDTLEENERRRIEGPKERKANNDAKSEDQSGNASTETALKPMSEARGHTGY 303
Query: 302 LTFARL 307
LTFA
Sbjct: 304 LTFATK 309
|
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Length = 309 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 3e-80
Identities = 99/295 (33%), Positives = 146/295 (49%), Gaps = 44/295 (14%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
KEGD V++ + V++ F G H + IGKP+G ++ S+ G Y+L
Sbjct: 2 FKEGDPVLLTDERGRRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLK 61
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
PTPE + L + RTQI+Y D +++ L + PG VLE+GTGSG+LT LARAV P GH
Sbjct: 62 PTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGH 121
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V T++ E A +ARE+ G+ VT+ + D++ ++ D++FLDLP PW
Sbjct: 122 VTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV----DAVFLDLPDPWNV 177
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWRADCGQ 254
+ LK G++ +SP +EQV+++ E+LR F DI E L+R +E+R +
Sbjct: 178 LEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVR------KE 231
Query: 255 GTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309
T RP GHTGY+ FAR
Sbjct: 232 AT---------------------------------RPETRMVGHTGYIVFARKLG 253
|
Length = 256 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
++ LEL PG VLE GTGSG LAR V G V + + E+ A AR + E G
Sbjct: 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE 120
Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
+ VTV D +G+P+E D I + ++P+ L LK G L
Sbjct: 121 N-VTVRHGD-GSKGWPEE--APYDRIIVTAAAPEVPEALL------DQLKPGGRL 165
|
Length = 209 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
+ LEL PG VLE GTGSG LA V V++ + + A+ ++ G+
Sbjct: 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH 126
Query: 160 SFVTVGVRDIQGQ-GFPDEFSGLADSI-----FLDLPQPWLAIPSAKKMLKQDGIL 209
+ V VR G G+P D I ++P+ L + LK+ GIL
Sbjct: 127 N---VSVRHGDGWKGWPAY--APFDRILVTAAAPEIPRALL------EQLKEGGIL 171
|
Length = 212 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 17/113 (15%)
Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162
LEL PG VLE G+GSG LT AR V G V + + + AR + E+ G+ + V
Sbjct: 68 LLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLEN-V 126
Query: 163 TVGVRDIQG-QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
V V D G QG+P EF+ D+I + ++P+ + LK+ G L
Sbjct: 127 IVVVGD--GRQGWP-EFAPY-DAIHVGAAAPEIPEALI------DQLKEGGRL 169
|
Length = 210 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVG 165
G VL+ G G+G LT LA + P V D E+ A+E+ ++ G F+
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGD 62
Query: 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIP-----SAKKMLKQDGILCSFSPCIE 217
+ ++ D D + + L P ++LK G+L P +
Sbjct: 63 IEELPQLQLEDN---SFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLL 116
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
+ + L +LE GT G +A A+ G + T + E+RA ARE+ GV
Sbjct: 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV 109
Query: 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGIL 209
+ + + G D +F+D P+ + A +L+ G++
Sbjct: 110 DDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPE---YLERALPLLRPGGLI 162
|
Length = 219 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L PG + + G G+GS+T A A P+G V + E+ + R GV
Sbjct: 30 LRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD---- 84
Query: 164 VGVRDIQGQGFPDEFSGLA--DSIFL 187
+ ++G P+ L D+IF+
Sbjct: 85 -NLEVVEGDA-PEALPDLPSPDAIFI 108
|
Length = 187 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
PG VL+ G G+GSL LAR P V D + ARE+ + + +T
Sbjct: 1 PGARVLDIGCGTGSLAIELARL-FPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQG 58
Query: 168 DIQGQGFPDEFSGLA--DSIFLDLPQPWLA--IPSAKKMLKQDGIL 209
D PD L D++F+ L + + +LK G L
Sbjct: 59 DA-----PDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRL 99
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
+ L L PG ++ + G G+GS+T AR V P G VY + + + + R GVS
Sbjct: 11 TLSKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVS 69
Query: 160 SFVTV 164
+ V V
Sbjct: 70 NIVIV 74
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L + PG VL+ G G G+ LAR V P G V D E A A+E G +
Sbjct: 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFV 74
Query: 164 VGVRDIQGQGFPDE 177
G D G FPD
Sbjct: 75 RG--DADGLPFPDG 86
|
Length = 241 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 100 VIMYLELV---PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
V M EL+ PG +LE GTGSG A A+ G VYT + ++ A A ++ ER
Sbjct: 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL 120
Query: 157 GVSSFVTV 164
G V V
Sbjct: 121 GYWGVVEV 128
|
Length = 205 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168
G VL+ G GSG+ + ARA P V + + AA AR G++ V V V D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAG-PDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 169 IQGQGFPDEFSGLADSIFLDLP---------QPW----LAIPSAKKMLKQDGILCSFSP 214
+ + G D + + P + +A ++LK G+L +P
Sbjct: 60 A--RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/48 (41%), Positives = 23/48 (47%)
Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
LEL PG VLE GTGSG LA V G V + + + A A
Sbjct: 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L+L G VLE GTGSG +A V +G V T + + A A++ ++ G + V
Sbjct: 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VE 130
Query: 164 VGVRD 168
V V D
Sbjct: 131 VIVGD 135
|
Length = 212 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172
L+ G G+G L +LAR V D + A AR+ + V D +
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKR-------APRKFVVGDAEDL 51
Query: 173 GFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILC 210
FPDE D + LP P A+ ++LK G L
Sbjct: 52 PFPDES---FDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 94 IADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
+ D S +V +L +L++ G TT + +AP V D HE R E
Sbjct: 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILE-LAPQAQVVALDIHEHRLKRVYE 280
Query: 152 DFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
+ +R G++ D +G E + D I LD P
Sbjct: 281 NLKRLGLTIKAETKDGDGRGPSQWAE-NEQFDRILLDAP 318
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.004
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-Q 170
VL+ G G+G+L +LA V D AR+ ++ V V D +
Sbjct: 2 VLDLGCGTGALALALASGPG--ARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEE 58
Query: 171 GQGFPDE-----FSGLADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
DE S ++ +L A+++LK G+L
Sbjct: 59 LPPEADESFDVIISDPPLHHLVEDLARFLEE--ARRLLKPGGVL 100
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 100.0 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 100.0 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.74 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.73 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.72 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.71 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.7 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.67 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.67 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.66 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.66 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.66 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.64 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.64 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.63 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.61 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.61 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| KOG1416 | 475 | consensus tRNA(1-methyladenosine) methyltransferas | 99.59 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.59 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.58 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.56 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.56 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.56 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.55 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.55 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.54 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.54 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.53 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.53 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.53 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.52 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.51 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.51 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.51 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.51 | |
| PLN02476 | 278 | O-methyltransferase | 99.51 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.5 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.5 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.49 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.49 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.47 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.47 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.47 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.47 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.46 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.46 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.46 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.46 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.46 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.46 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.45 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.45 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.44 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.44 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.44 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.44 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.43 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.43 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.43 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.42 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.42 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.41 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.41 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.4 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.4 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.39 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.39 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.39 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.38 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.38 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.36 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.36 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.36 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.34 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.34 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.34 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.33 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.33 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.33 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.33 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.32 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.32 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.32 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.31 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.3 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.29 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.29 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.29 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.27 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.27 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.27 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.26 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.25 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.23 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.23 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.23 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.22 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.21 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 99.21 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 99.2 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.2 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.19 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.19 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.19 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.18 | |
| PLN02366 | 308 | spermidine synthase | 99.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.18 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.17 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.16 | |
| PF14801 | 54 | GCD14_N: tRNA methyltransferase complex GCD14 subu | 99.16 | |
| PF04189 | 299 | Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 i | 99.16 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.15 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.15 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.15 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 99.14 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.14 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 99.14 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.14 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.13 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.13 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.13 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 99.12 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.12 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.12 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.12 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.11 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.1 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.1 | |
| PLN02823 | 336 | spermine synthase | 99.09 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.09 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.08 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.07 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.07 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.06 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.06 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.06 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.04 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.04 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.03 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.02 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 98.99 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.99 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.98 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.97 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.96 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.96 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.96 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.95 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.95 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.94 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.94 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.93 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.93 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.93 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.92 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.9 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.89 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.86 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.86 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.83 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.81 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.81 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.79 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.78 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.77 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.76 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 98.76 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.76 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.76 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.75 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.75 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.73 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.72 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.71 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.68 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.64 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.63 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.63 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.61 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.6 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 98.6 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.59 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 98.58 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.57 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 98.56 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.56 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.56 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.51 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.5 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.5 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 98.5 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 98.49 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.47 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.46 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.45 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.43 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 98.39 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.39 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 98.37 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 98.34 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.32 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.31 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.31 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.3 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.3 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 98.29 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 98.28 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 98.28 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.27 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 98.26 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.26 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.25 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 98.24 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.21 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.2 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.2 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 98.19 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.19 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.18 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 98.18 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.17 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 98.14 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 98.14 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.13 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.1 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.09 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.08 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.08 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.07 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 98.05 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.04 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 98.01 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.98 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.97 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 97.97 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 97.93 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.9 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.89 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.89 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 97.88 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.87 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 97.84 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.84 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.79 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 97.76 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 97.72 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.7 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.69 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.68 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 97.67 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 97.67 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.66 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.63 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.62 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 97.6 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 97.59 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 97.57 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 97.57 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 97.56 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 97.56 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 97.53 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 97.53 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.52 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 97.51 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 97.5 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.48 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.45 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.43 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 97.41 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.35 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.34 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.34 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 97.34 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 97.28 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 97.23 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 97.19 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 97.16 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 97.14 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.13 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 97.11 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 97.1 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.09 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.07 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 97.06 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 97.04 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 97.04 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.01 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.98 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.97 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.97 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.95 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 96.95 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 96.93 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 96.93 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 96.92 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.9 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 96.87 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.83 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 96.79 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 96.78 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 96.75 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.71 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 96.7 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 96.7 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.7 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.69 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 96.69 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 96.65 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.63 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 96.58 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 96.57 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.56 | |
| PHA01634 | 156 | hypothetical protein | 96.56 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 96.56 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.56 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.52 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.52 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.5 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.5 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 96.4 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 96.33 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.32 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 96.3 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 96.28 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.23 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.08 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.07 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 96.0 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 95.94 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 95.94 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 95.92 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.91 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.89 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.86 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 95.82 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.69 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 95.68 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.6 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.56 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.47 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.43 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.27 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 95.25 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.16 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.15 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.93 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.93 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 94.77 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 94.71 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 94.45 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 94.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.25 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.19 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 94.18 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.07 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 93.88 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 93.81 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.8 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.65 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 93.62 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 93.41 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 93.39 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.34 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 93.33 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.26 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.2 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 93.17 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.14 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 92.7 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 92.64 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 92.62 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 92.55 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 92.55 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 92.49 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.49 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 92.43 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 92.42 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 92.32 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 92.14 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.04 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 91.99 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 91.99 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 91.87 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.77 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 91.74 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 91.69 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 91.68 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 91.62 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 91.56 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 91.55 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 91.47 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 91.46 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.43 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 91.35 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 91.27 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 91.25 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 91.22 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.19 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 91.12 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.96 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 90.88 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 90.83 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 90.82 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.59 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.58 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.52 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 90.45 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.43 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 90.37 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.12 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 90.1 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 90.06 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 90.02 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.98 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 89.96 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 89.86 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 89.83 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 89.76 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 89.72 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 89.63 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 89.6 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 89.54 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 89.45 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 89.43 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 89.31 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 89.24 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.87 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 88.79 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 88.75 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 88.74 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 88.67 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 88.66 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.66 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 88.62 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.52 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 88.52 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 88.46 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 88.39 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 88.32 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 88.21 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 88.12 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 87.91 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 87.89 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 87.87 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.84 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 87.79 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.77 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 87.74 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 87.63 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.6 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 87.59 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 87.51 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 87.47 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 87.27 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 87.26 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 87.07 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 87.03 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 86.84 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 86.84 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 86.82 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.76 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 86.74 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 86.73 |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=363.81 Aligned_cols=253 Identities=39% Similarity=0.687 Sum_probs=242.4
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeec
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI 94 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 94 (311)
+||+||+|+|...+++.+.+.+.+++.++|+.|.+++++++|+++|..+.++.|..+++++|++.+|...+++++|++||
T Consensus 1 ~~~~gd~vlL~~~~~~~~lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f~vl~p~~~d~~~~~~R~tQiIyP 80 (256)
T COG2519 1 PFKEGDPVLLTDERGRRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLKPTPEDYLLSMKRRTQIIYP 80 (256)
T ss_pred CCCCCCeEEEEecCCcEEEEeccCCcccccceeeechhhhcCCCCCceEEeeCCceEEEeCCCHHHHHHhCcCCCceecC
Confidence 58999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
+|+++|+..+++.||++|||.|+|||.++++|++.+++.++|+++|+.+++++.|++|++.+++.+++++..+|+.+ ..
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~-~~ 159 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE-GI 159 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999985 33
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeeccCC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRADCG 253 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~~~~ 253 (311)
.+ ..||+||+|+|+||++++++.+.|+|||.+++|+|+.+|+.++.+.|++ +|.+++.+|.+.|+|++...+
T Consensus 160 ~~---~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~---- 232 (256)
T COG2519 160 DE---EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEA---- 232 (256)
T ss_pred cc---cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccc----
Confidence 33 5899999999999999999999999999999999999999999999999 799999999999999999876
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeecc
Q 021550 254 QGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKCL 310 (311)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~~ 310 (311)
+||.++|.+|||||+|+|+.+.
T Consensus 233 -----------------------------------~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 233 -----------------------------------TRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred -----------------------------------cCcccccccceeEEEEEeeccC
Confidence 6999999999999999999763
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-52 Score=349.00 Aligned_cols=301 Identities=52% Similarity=0.856 Sum_probs=257.6
Q ss_pred CCCCCCcccCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhh
Q 021550 4 TDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTL 83 (311)
Q Consensus 4 ~~~~~~~~~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~ 83 (311)
.+|..++++...|++||.|+++..+|.++++++..++.+++++|.++|.+|||++||..+.+..|+++|++.|++++|..
T Consensus 1 ~s~~~f~syk~~ie~GDlvi~~~~~~~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL~PTpELWTl 80 (314)
T KOG2915|consen 1 VSPMSFTSYKRRIEEGDLVIAYVGRGEMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLLQPTPELWTL 80 (314)
T ss_pred CCCccccChhhhcccCCEEEEEEccCceEEEEEeccceeeccccccchhheecCCccceeeecCCcEEEEecCChHHhhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 84 VLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
.+++++||+|+.|+++|++++++.||++|||.|+|+|.++.++++.++|.++++.+|+.+.+.+.|.+.++++++.++++
T Consensus 81 ~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 81 ALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred hccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCc-EEEEecCCHHHHHHHHHHHhh-cCceeeEEEeec-
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILL- 240 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG-~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~- 240 (311)
+.+.|++..+|... ...+|+||+|+|.||.++..+.+.||.+| +++.|+||++|+++.++.|++ +|.+++++|.+.
T Consensus 161 ~~hrDVc~~GF~~k-s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~~ 239 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIK-SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLLV 239 (314)
T ss_pred EEEeecccCCcccc-ccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeehh
Confidence 99999998776542 26899999999999999999999999765 999999999999999999999 899999999999
Q ss_pred eeeEEeeeeccCCCCCCCCCCCcccc--ccccccccCCCCCC---C-CCCcceeecCCCCccccceeeEeEEee
Q 021550 241 RTYEIRQWRADCGQGTGGGSAGSIRH--KRKQHLIEGSGEKE---N-PNNSTVMARPNGEARGHTGYLTFARLK 308 (311)
Q Consensus 241 r~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~-~~~~~~~~~p~~~~~~htgyl~~a~~~ 308 (311)
|.+.|..-+++.-.-.+. +-+..+ -+++++.+++.++. + +..-....||. +.+||||||+||++.
T Consensus 240 qk~~V~~~~~~~~~l~~v--k~~~~~~~~~k~~~~~~d~~e~~~ss~~~~~~~~~~~~-~~~gHTgyLtfat~~ 310 (314)
T KOG2915|consen 240 QKNGVKTVKLALERLEDV--KLDKQEEIERKGRNFDSDGVEQSNSSFPSSFVTGSRPK-EQPGHTGYLTFATKL 310 (314)
T ss_pred hhhceeeeccchhhhhhh--cccchhhhhhhcccccccccccccccccccccccCCcc-ccCCcceEEEEeecc
Confidence 778777655422221111 011000 02333333333322 2 22333345555 779999999999984
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=325.45 Aligned_cols=239 Identities=52% Similarity=0.875 Sum_probs=162.1
Q ss_pred cEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 021550 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS 148 (311)
Q Consensus 69 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~ 148 (311)
+++|+++|++++|...+++++|++||+|+++|+.++++.||++|||.|+|+|.++.+|++.++|.|+|+++|+++++++.
T Consensus 1 g~v~vl~Pt~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~ 80 (247)
T PF08704_consen 1 GFVYVLRPTPELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK 80 (247)
T ss_dssp ---------HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred CCccccchhHHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcc-cCCcEEEEecCCHHHHHHHHHHHh
Q 021550 149 AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 149 a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~L-kpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
|++|++.+|+.+++.+.+.|+...++.+.....+|+||+|+|+||.++..+.+.| ++||++++|+||.+|+.++++.|+
T Consensus 81 A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 81 ARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp HHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 9999999999888999999998766744333679999999999999999999999 999999999999999999999999
Q ss_pred h-cCceeeEEEeeceeeEEeeeeccCCCCCCCCCCCc-----cccccccccccCCC-CCCCCCCcceeecCCCCccccce
Q 021550 228 L-NFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGS-----IRHKRKQHLIEGSG-EKENPNNSTVMARPNGEARGHTG 300 (311)
Q Consensus 228 ~-~f~~~~~~e~~~r~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~htg 300 (311)
+ +|.+++++|.+.|+|++.+.+++..+......... ....+++...+... .......+.+..+|..+|+||||
T Consensus 161 ~~gf~~i~~~Evl~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~e~kgHTg 240 (247)
T PF08704_consen 161 EHGFTDIETVEVLLREWEVRPRRLRPPDEGQKRPKDNKERREEGRERRKNEQEQKSEEQSSNESKKVVARPVPEMKGHTG 240 (247)
T ss_dssp HTTEEEEEEEEEEEEEEEEETCG--B-SEE--------------------------------------EEE-SS------
T ss_pred HCCCeeeEEEEEEeeEEEEEecccCCccccccccCcccccchhhhhhhhccccccccccccccccccccCCCcccCCcce
Confidence 9 89999999999999999999987666432111100 00111111111111 11222356678999999999999
Q ss_pred eeEeEEe
Q 021550 301 YLTFARL 307 (311)
Q Consensus 301 yl~~a~~ 307 (311)
|||||+|
T Consensus 241 YLTFA~~ 247 (247)
T PF08704_consen 241 YLTFATK 247 (247)
T ss_dssp EEE----
T ss_pred eeecccC
Confidence 9999986
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=144.28 Aligned_cols=128 Identities=28% Similarity=0.407 Sum_probs=109.1
Q ss_pred CHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 77 TPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
.++.....++.+.+..+.+. ++..+.+.+|.+|||+|||||-++..+++..+ .++|+++|+|+.|++.|+++....
T Consensus 23 ~YD~~n~~~S~g~~~~Wr~~---~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 23 KYDLMNDLMSFGLHRLWRRA---LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHhhcccccCcchHHHHHH---HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhcc
Confidence 33444444455555555554 56677777999999999999999999999986 899999999999999999999988
Q ss_pred CCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 157 GVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 157 g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+..+ ++++++|++..+|++ .+||+|.+ +.++...+|+++.|+|||||++++.
T Consensus 99 ~~~~-i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 99 GVQN-VEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred Cccc-eEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 8887 999999999999998 89999975 6789999999999999999998875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=144.34 Aligned_cols=131 Identities=28% Similarity=0.396 Sum_probs=85.3
Q ss_pred cCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 021550 75 APTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (311)
Q Consensus 75 ~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (311)
.+.++.....+..+....+.. .+++.+...+|.+|||+|||+|.++..+++.+++.++|+++|+|++|++.|++++.
T Consensus 17 a~~YD~~n~~ls~g~~~~wr~---~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRWRR---KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp --------------------S---HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred HHHhCCCccccCCcHHHHHHH---HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 344443333344444444444 36667788999999999999999999999998888999999999999999999998
Q ss_pred hcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 155 ~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..+ ++++++|+++.++++ ++||+|++ +.+++..+++++.++|||||.+++.
T Consensus 94 ~~~~~~-i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 94 REGLQN-IEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HTT--S-EEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhCCCC-eeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 887765 999999999888887 89999985 6788899999999999999999875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=133.50 Aligned_cols=141 Identities=22% Similarity=0.310 Sum_probs=116.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++++..+++.+++.+..+|+.+ .++. .
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~-~l~~-~ 108 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE-ILFT-I 108 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh-hHhh-c
Confidence 4567889999999999999999999999988766789999999999999999999998865558999888863 2221 1
Q ss_pred CCCccEEEecC--CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeecee
Q 021550 179 SGLADSIFLDL--PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRT 242 (311)
Q Consensus 179 ~~~~D~V~~d~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~ 242 (311)
.+.||+||++. .....+++.+.+.|+|||.+++.....+++.++...+++ +| +.+.++...+.
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~ 174 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAK 174 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhh
Confidence 15799999854 356789999999999999999888889999999999977 77 67777665543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=129.45 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=118.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++++...++.+ +++..+|+. ..++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~-~~~~- 95 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP-IELP- 95 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch-hhcC-
Confidence 3446678888899999999999999999999874 67899999999999999999998888765 899988874 3333
Q ss_pred cCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 177 EFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 177 ~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|+++.. ....++..+.+.|+|||.+++.....++..+....+++ +|..++..+.....|...
T Consensus 96 ---~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 165 (187)
T PRK08287 96 ---GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPL 165 (187)
T ss_pred ---cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEc
Confidence 57999998643 45568899999999999998876667777888888887 798888888888888765
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=123.68 Aligned_cols=134 Identities=23% Similarity=0.277 Sum_probs=115.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..-+..+..+.++||++++|+|||+|..++.++ +.+|.++||++|.++++++..++|++++++++ +.++.+|+. .
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap-~ 95 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAP-E 95 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccch-H
Confidence 34444567889999999999999999999999999 66899999999999999999999999999776 999999997 4
Q ss_pred CCCCcCCCCccEEEecCC-ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 173 GFPDEFSGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
.++.. ..+|.||+.-. .-..+++.+...|+|||++|+-..+.+......+++++ ++.
T Consensus 96 ~L~~~--~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 96 ALPDL--PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred hhcCC--CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 44442 36999998655 44568999999999999999999999999999999998 665
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=129.87 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=115.5
Q ss_pred CCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHH---hcCCCCCCEEEEEcccccHHHHHHHHHhCCCc
Q 021550 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (311)
Q Consensus 58 ~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~ 134 (311)
.||+.+....+..++++.|. .++..+.++. .+++.+|.+|||+|||+|.++..+++.++ .+
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~---------------r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g 97 (226)
T PRK04266 34 VYGERLIKWEGVEYREWNPR---------------RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EG 97 (226)
T ss_pred CCCceEEecCCcEEEEECCC---------------ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CC
Confidence 45666666666667777662 1344444444 58899999999999999999999999974 68
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEE
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~ 211 (311)
+|+++|++++|++.+.+++... .+ +.++.+|+..........+.||+|+++.++++. ++.++.++|||||.+++
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999887776543 34 888899986311000011569999999888764 48899999999999998
Q ss_pred e------cCCH---HHHHHHHHHHhh-cCceeeEEEe
Q 021550 212 F------SPCI---EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 212 ~------~~~~---~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
. .... .......+.+.+ +|..++..+.
T Consensus 175 ~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 175 AIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred EEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3 2211 222334566666 7887776664
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=130.31 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=96.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+.+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...+..+ +++..+|+....+++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~-- 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPFDD-- 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCCCC--
Confidence 47778888999999999999999999999988777899999999999999999988777754 999999997655555
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++..++.++.++|+|||.+++..+
T Consensus 113 -~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 -NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 78999986 356777899999999999999987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=118.48 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=84.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~~~~~D~V~ 186 (311)
|+.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...+..++++++++|+ ...... +.||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL----EPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS----SCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC----CCCCEEE
Confidence 68899999999999999999954 57999999999999999999997777777899999999 322232 5799999
Q ss_pred ecC-C--------ChhhHHHHHHhcccCCcEEEEe
Q 021550 187 LDL-P--------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~-~--------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. . ....+++.+.+.|+|||++++-
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 876 2 1235699999999999999864
|
... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=127.59 Aligned_cols=122 Identities=33% Similarity=0.380 Sum_probs=103.9
Q ss_pred hcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 85 LSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
+..+..+..|...+.+++++.+.++++|||||||+|+.++.+++.. ++|+++|+.++..+.|++|+...|+.| +.+
T Consensus 49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v 124 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTV 124 (209)
T ss_pred CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEE
Confidence 3456667788899999999999999999999999999999999995 599999999999999999999999988 999
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++|.. .+|++. ..||.|++....+. .=+.+.+.|++||++++-.-
T Consensus 125 ~~gDG~-~G~~~~--aPyD~I~Vtaaa~~-vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 125 RHGDGS-KGWPEE--APYDRIIVTAAAPE-VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EECCcc-cCCCCC--CCcCEEEEeeccCC-CCHHHHHhcccCCEEEEEEc
Confidence 999998 678764 68999997544321 22457788999999997543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=128.72 Aligned_cols=121 Identities=26% Similarity=0.270 Sum_probs=101.3
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+..+..|...+.++..+++.++++|||+|||+|+++..+++.+++.++|+++|+++++++.|++++...+..+ +++..+
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 3456778888889999999999999999999999999999987767899999999999999999999888765 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+.....+. +.||+|+++...+ .....+.+.|+|||++++..
T Consensus 135 d~~~~~~~~---~~fD~I~~~~~~~-~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEEN---APYDRIYVTAAGP-DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcC---CCcCEEEECCCcc-cchHHHHHhhCCCcEEEEEE
Confidence 987432233 6899999865432 34567888999999998753
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=124.80 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=115.4
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.....++..+++.++.+|||+|||+|.++..+++.. +.++|+++|+++++++.+++|+...++.+ ++++.+|+.. .+
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~-~~ 103 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPE-CL 103 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHH-HH
Confidence 333357888888999999999999999999998764 56899999999999999999999888865 9999998863 12
Q ss_pred CCcCCCCccEEEecCCCh-hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 175 PDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
.. ....+|.++++...+ ..+++.+.+.|+|||.+++..+..++.....+.++. +....+.++...+.++..
T Consensus 104 ~~-~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
T PRK07402 104 AQ-LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETR 176 (196)
T ss_pred hh-CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccc
Confidence 11 013468887765544 478999999999999999999888887777777776 455666666655555443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=127.47 Aligned_cols=120 Identities=27% Similarity=0.326 Sum_probs=99.5
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
..+..|...+.+++.+++.++++|||+|||+|..+..+++.+++.++|+++|+++++++.|++++...+..+++++..+|
T Consensus 53 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 53 ATISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred CEechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 34455666777889999999999999999999999999998766789999999999999999999988887669999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. .++.. .+||+|+++.... .+.+.+.+.|+|||++++-
T Consensus 133 ~~~-~~~~~--~~fD~Ii~~~~~~-~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 133 GKR-GLEKH--APFDAIIVTAAAS-TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccc-CCccC--CCccEEEEccCcc-hhhHHHHHhcCcCcEEEEE
Confidence 874 33321 6899999876543 3457888999999999863
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=128.82 Aligned_cols=120 Identities=29% Similarity=0.331 Sum_probs=100.4
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
...+..|...+.+++.+++.++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++++...++.+ ++++.+
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~ 135 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVG 135 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEEC
Confidence 3455667777889999999999999999999999999999987666889999999999999999999998865 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+.. .++.. ..||+|+++.+.+ .+...+.+.|+|||++++.
T Consensus 136 d~~~-~~~~~--~~fD~Ii~~~~~~-~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQ-GWEPL--APYDRIYVTAAGP-KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred Cccc-CCccc--CCCCEEEEcCCcc-cccHHHHHhcCcCcEEEEE
Confidence 9874 33321 5899999876543 3567888999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=131.29 Aligned_cols=124 Identities=26% Similarity=0.234 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
.+..+.+.++++|||+|||+|.++..+++. +..+++++|+++.+++.+++|+...+.. +.+..+|+.. .++.
T Consensus 28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~-~~~~--- 99 (223)
T PRK14967 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWAR-AVEF--- 99 (223)
T ss_pred HHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhh-hccC---
Confidence 344556788899999999999999988875 3469999999999999999999877752 7888888863 3444
Q ss_pred CCccEEEecCCCh--------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 180 GLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 180 ~~~D~V~~d~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+.||+|++++|-. ..++..+.+.|+|||.++++.+...+..+....+++ +|.
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 6899999987521 135678899999999999877666666777777776 553
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=129.14 Aligned_cols=121 Identities=31% Similarity=0.401 Sum_probs=97.5
Q ss_pred CCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
....+..|...+.+++.++++||++|||||||+|+.+..++..+++.++|+++|+.+...+.|++++...+..+ +.+..
T Consensus 51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~ 129 (209)
T PF01135_consen 51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVV 129 (209)
T ss_dssp TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEE
T ss_pred ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEE
Confidence 34566778889999999999999999999999999999999999888899999999999999999999999886 99999
Q ss_pred ecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 167 ~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+|.. ..++.. ..||.|++....+ ..-..+.+.|++||++++-
T Consensus 130 gdg~-~g~~~~--apfD~I~v~~a~~-~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGS-EGWPEE--APFDRIIVTAAVP-EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GG-GTTGGG---SEEEEEESSBBS-S--HHHHHTEEEEEEEEEE
T ss_pred cchh-hccccC--CCcCEEEEeeccc-hHHHHHHHhcCCCcEEEEE
Confidence 9987 566543 6899999875543 2345678889999999974
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=130.55 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--cCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++..+.+.++.+|||+|||+|.++..+++.+++.++|+++|+|++|++.|+++... .....+++++.+|+.+.++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~- 143 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD- 143 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC-
Confidence 45667888999999999999999999998876678999999999999999877532 122234999999998777776
Q ss_pred CCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++..+++++.++|||||++++...
T Consensus 144 --~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 --CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred --CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 78999975 467888999999999999999987643
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=123.75 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=99.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+...++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.+++|+..+++.+ +++...|.. ..++.
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~-~~~~~-- 96 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLF-EALPD-- 96 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTT-TTCCT--
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccc-ccccc--
Confidence 35555555578899999999999999999874 66789999999999999999999999988 999999987 34554
Q ss_pred CCCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEee
Q 021550 179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 179 ~~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+.||+|++++|-. ..++..+.+.|+|||.+++........... +++.|...++++..
T Consensus 97 -~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~ 163 (170)
T PF05175_consen 97 -GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVVAKN 163 (170)
T ss_dssp -TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEEEEE
T ss_pred -cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEEEEC
Confidence 7899999998832 357889999999999996554433333333 55556666655543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=132.71 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=95.5
Q ss_pred HHHHhcCC-----CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 99 FVIMYLEL-----VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 99 ~i~~~~~~-----~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
.++..+.+ .++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++....++.+++++..+|+...+
T Consensus 104 ~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~ 181 (340)
T PLN02244 104 ESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP 181 (340)
T ss_pred HHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC
Confidence 45666776 788999999999999999999885 57999999999999999999888888767999999998766
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+++ +.||+|++ +.++...++.++.++|+|||.|++..
T Consensus 182 ~~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 182 FED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 766 78999985 45678889999999999999998753
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=125.00 Aligned_cols=118 Identities=25% Similarity=0.358 Sum_probs=101.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCC--CCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQG--FPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~-~~~~--~~~~~~~~~D~ 184 (311)
++.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...+..+ +.++.+|+ .... ++. +.||.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~---~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPD---GSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCc---cccce
Confidence 67899999999999999999875 66899999999999999999998887755 99999998 4322 444 68999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
|+++.+.+| .+++++.++|+|||.+++.++....+.++.+.+++ ++
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 998766543 57899999999999999999999999999999887 54
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-15 Score=125.60 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=115.0
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.|.-++..+..+....+|||+|||+|.+++.++++. +..+++++|+++++.+.|+++++.+++.+++++++.|+.....
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 344456677787778999999999999999999996 3599999999999999999999999999999999999975221
Q ss_pred CCcCCCCccEEEecCC-----------------------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 175 PDEFSGLADSIFLDLP-----------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~-----------------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
. ....+||+|++|+| +..++++.+.++|||||.++++.+ .+.+.++.+.+++ +|
T Consensus 110 ~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r-~erl~ei~~~l~~~~~ 187 (248)
T COG4123 110 A-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR-PERLAEIIELLKSYNL 187 (248)
T ss_pred c-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec-HHHHHHHHHHHHhcCC
Confidence 1 11156999999988 123578899999999999997666 5668888888888 67
Q ss_pred ceeeEEEeec
Q 021550 231 TDIRTFEILL 240 (311)
Q Consensus 231 ~~~~~~e~~~ 240 (311)
...+...+..
T Consensus 188 ~~k~i~~V~p 197 (248)
T COG4123 188 EPKRIQFVYP 197 (248)
T ss_pred CceEEEEecC
Confidence 6655554443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-15 Score=123.55 Aligned_cols=116 Identities=22% Similarity=0.381 Sum_probs=100.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~~~~~~~~D~ 184 (311)
...+|||+|||+|.++..+++.. |...++++|+++++++.|++++...++.+ +.++.+|+... .++. +.+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~---~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPD---GSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCC---CceeE
Confidence 45699999999999999999885 78899999999999999999998888875 99999999641 1333 58999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+++.|+|| .++..+.++|+|||.|++.+.......++.+.+..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 999998875 47899999999999999988888888888888877
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=122.44 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=110.1
Q ss_pred HHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHH
Q 021550 78 PELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASARED 152 (311)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~ 152 (311)
++.....+..+.+.++ ++ +.+..+++.++.++||++||||-.+..+.+.+... .+|+.+|++++|++.++++
T Consensus 73 YD~mND~mSlGiHRlW-Kd--~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLW-KD--MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHH-HH--HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 3444455566666666 33 36788999999999999999999999999998532 8999999999999999999
Q ss_pred HHhcCCCCc--EEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 153 FERTGVSSF--VTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 153 ~~~~g~~~~--v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+.++... +.++.+|+++.+|++ ..||...+ +.+++..++++++++|||||++.+.....
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 150 AKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 877777544 899999999988988 89998754 77899999999999999999998765443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=126.12 Aligned_cols=107 Identities=29% Similarity=0.375 Sum_probs=92.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
..+++.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++....++.+ +++..+|+...++++ +.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~~~---~~ 146 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPVAD---NS 146 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCCCC---Cc
Confidence 44678899999999999999998888887777899999999999999999998888764 899999987655655 78
Q ss_pred ccEEEecC-----CChhhHHHHHHhcccCCcEEEEe
Q 021550 182 ADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 182 ~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
||+|+.+. ++...+++++.++|+|||++++.
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99998653 46778999999999999999974
|
|
| >KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=128.70 Aligned_cols=204 Identities=17% Similarity=0.149 Sum_probs=136.1
Q ss_pred CcEEEEecCCHHH----HhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH
Q 021550 68 GGFVYLLAPTPEL----WTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE 143 (311)
Q Consensus 68 ~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~ 143 (311)
..++.+.+|+... |....+.+...+..+.+++|+.++++++|.++|.+-.-.|.++.+++.++++.|.++-+=...
T Consensus 164 ~~~~~v~rPt~r~l~~~yy~kdp~rI~~lr~D~Lsl~Ltlanv~~g~~~Lv~d~tgGL~~galleRmgG~G~i~~~hpG~ 243 (475)
T KOG1416|consen 164 AKRFQVLRPTIRLLLQAYYDKDPQRILDLRADTLSLLLTLANVQAGGNYLVVDETGGLLLGALLERMGGTGDIIHKHPGK 243 (475)
T ss_pred hhheeeechhHHHHHHHHHHhChHHHhhhhHHHHHHHHHHhCcccCCeEEEEecCCcchHHHHHHHhcCCceeEEecCCC
Confidence 5667889998854 334455566677888899999999999999999999888999999999998777776552211
Q ss_pred HHH-HHHHH------------------HHHhcCC--CCcEE--EEEecCCC---CCCC----Cc----CCCC--------
Q 021550 144 QRA-ASARE------------------DFERTGV--SSFVT--VGVRDIQG---QGFP----DE----FSGL-------- 181 (311)
Q Consensus 144 ~~~-~~a~~------------------~~~~~g~--~~~v~--~~~~D~~~---~~~~----~~----~~~~-------- 181 (311)
... ..... .+..... +.+.. ++..+-.. ..+. +. ..+.
T Consensus 244 vp~~~~~~~~~~~d~~l~~lv~~~i~~vl~~~h~~~~~~~~~~~ve~~e~~l~E~~~~~~~~eE~~a~~~~~~~~~i~~~ 323 (475)
T KOG1416|consen 244 VPQISAVLIFNFPDANLDRLVQVNINEVLSKKHVTTDANLLYSVVEPPENELNETQLSPLPKEEPEAIEPGKLKNTIDHK 323 (475)
T ss_pred CchHHHHHHhcCchhhhhheeeccHHHHhHhhhcCCccccccceecCCCCchhhhccCCcccccchhcCCCccccccccc
Confidence 100 00000 0000000 00011 11111000 0000 00 0000
Q ss_pred --------cc--------------------EEEec-CCChhhHHHHHHh---cccCCcEEEEecCCHHHHHHHHHHHhh-
Q 021550 182 --------AD--------------------SIFLD-LPQPWLAIPSAKK---MLKQDGILCSFSPCIEQVQRSCESLRL- 228 (311)
Q Consensus 182 --------~D--------------------~V~~d-~~~~~~~l~~~~~---~LkpgG~lv~~~~~~~~~~~~~~~l~~- 228 (311)
++ +++++ ..++|-+++..+. .|+|.+.+++|+++.+.+.+.+.+|.+
T Consensus 324 ~~~~r~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~~d~~vvae~~hpll~~l~pSrp~viy~q~ke~L~e~~~~L~~~ 403 (475)
T KOG1416|consen 324 ESLIRKAKWYNSQWQIKEGIEEWLYEGLVSAILMHRPTDPLVVAEKIHPLLDNLAPSRPIVIYSQYKEPLQECYHKLYQR 403 (475)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhcccccchhhHHHhcccccccCCCCCEEEeechhHHHHHHHHHHhhc
Confidence 10 01111 1255555565555 889999999999999999999999998
Q ss_pred -cCceeeEEEeeceeeEEeeeeccCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEe
Q 021550 229 -NFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARL 307 (311)
Q Consensus 229 -~f~~~~~~e~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~ 307 (311)
.+.+..+.|.|+|.|||.|+| +||.|.|+|.+|||+++.+
T Consensus 404 ~~vinL~ite~wlR~YQVLP~R---------------------------------------tHP~M~msg~gGylLsGik 444 (475)
T KOG1416|consen 404 GKVINLSITETWLRPYQVLPDR---------------------------------------THPLMTMSGGGGYLLSGIK 444 (475)
T ss_pred CceEeeeechhhccceeecCCC---------------------------------------CCcceEeecCCceEEeeeE
Confidence 599999999999999999998 6999999999999999988
Q ss_pred ecc
Q 021550 308 KCL 310 (311)
Q Consensus 308 ~~~ 310 (311)
...
T Consensus 445 v~~ 447 (475)
T KOG1416|consen 445 VIT 447 (475)
T ss_pred Eec
Confidence 753
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=126.40 Aligned_cols=134 Identities=28% Similarity=0.315 Sum_probs=103.6
Q ss_pred eeeecccHHH--HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 90 QILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 90 ~~~~~~~~~~--i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
..++..+.+. ....+++.+|.+|||+|||+|..+.++++.+++.+.|+++|+++.+++.+++++++.++.+ +.+...
T Consensus 51 G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~ 129 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNF 129 (264)
T ss_pred CeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 3344445443 3466788999999999999999999999998767899999999999999999999999876 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---H
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---E 217 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~ 217 (311)
|+....... +.||.|++|+|+. ..+|..+.+.|+|||+++ |+.|. +
T Consensus 130 D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-Ystcs~~~~ 205 (264)
T TIGR00446 130 DGRVFGAAV---PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV-YSTCSLEPE 205 (264)
T ss_pred CHHHhhhhc---cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCCCChH
Confidence 986432222 5699999998733 247889999999999997 66554 3
Q ss_pred HHHHHHHHHhh
Q 021550 218 QVQRSCESLRL 228 (311)
Q Consensus 218 ~~~~~~~~l~~ 228 (311)
+.+..++.+.+
T Consensus 206 Ene~vv~~~l~ 216 (264)
T TIGR00446 206 ENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHHH
Confidence 33445554444
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-14 Score=116.38 Aligned_cols=119 Identities=22% Similarity=0.143 Sum_probs=95.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|..+..+++.. +.++|+++|+++++++.|+++++..++.+ +++..+|+.+... . ++||+|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~---~~fDlV 116 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E---EKFDVV 116 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C---CCccEE
Confidence 4458999999999999999999864 67899999999999999999999999877 9999999975333 3 689999
Q ss_pred EecC-CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 186 FLDL-PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 186 ~~d~-~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+++. .....+++.+.+.|+|||.++++.+. ....++.+..+. ++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 117 TSRAVASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPKALGGK 163 (187)
T ss_pred EEccccCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHHhcCce
Confidence 9864 34567889999999999999987544 334444444443 554
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=115.75 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=89.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+.+.+|||+|||+|.++..++..+++.++++++|+++++++.|+++++..+..+ +++.++|+.+ ++....+.||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~--l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIED--LPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTC--GCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhc--cccccCCCeeEEE
Confidence 467899999999999999999776778999999999999999999999999885 9999999985 3321115899999
Q ss_pred ec-----CCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 187 LD-----LPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++ .+++..+++.+.+.|+++|.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 75 456668899999999999999987665
|
... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=133.87 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=95.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~ 177 (311)
.+...+++.+|.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.+++++++.|+.+ +++...|+.... +..
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~- 305 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQ- 305 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhh-
Confidence 35567889999999999999999999999998778999999999999999999999999876 899999987422 223
Q ss_pred CCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.||.|++|+|+. +++|.++.+.|+|||.++ |++|.
T Consensus 306 --~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTCs 368 (431)
T PRK14903 306 --DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILL-YSTCT 368 (431)
T ss_pred --ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence 6799999998851 346889999999999976 66665
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=119.43 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=94.0
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~ 180 (311)
..+.+.++++|||+|||+|.++.+++..+++.+.|+++|+++.+.+...+.+... .| +.++..|+.... +.. ..+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~-~~~ 201 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRM-LVP 201 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhc-ccC
Confidence 4556899999999999999999999999988899999999987664444433221 33 888899986421 111 115
Q ss_pred CccEEEecCCChhh---HHHHHHhcccCCcEEEEe--------cCCHHH-HHHHHHHHhh-cCceeeEEE
Q 021550 181 LADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF--------SPCIEQ-VQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 181 ~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~--------~~~~~~-~~~~~~~l~~-~f~~~~~~e 237 (311)
.+|+||+|...+++ ++.++.++|||||.|++. .+..++ +.+-.+.|++ +|..++.++
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 79999999876663 456889999999999983 112222 3333466776 687666554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=120.38 Aligned_cols=124 Identities=22% Similarity=0.265 Sum_probs=104.7
Q ss_pred CCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
....++.|....++..++...++.+|||+|++.|+.++++|..+..+++++++|+++++.+.|++|+++.|+.+++..+.
T Consensus 38 ~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 38 NGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred cCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 34455557777778888888899999999999999999999999668999999999999999999999999999888888
Q ss_pred -ecCCCCCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 167 -RDIQGQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 167 -~D~~~~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+|..+ .+.....++||+||+|.. ....+++.+.+.|+|||.+++
T Consensus 118 ~gdal~-~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 118 GGDALD-VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cCcHHH-HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 57764 222222389999999764 556799999999999999987
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=114.96 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...+...++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++...+. + +++..+|+.. . ..
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~-~~~~~~d~~~-~-~~-- 80 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-G-LDVVMTDLFK-G-VR-- 80 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEccccc-c-cC--
Confidence 45566666778899999999999999998872 3899999999999999999987775 3 8888888864 2 23
Q ss_pred CCCccEEEecCCC--------------------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 179 SGLADSIFLDLPQ--------------------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 179 ~~~~D~V~~d~~~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
++||+|++++|- ...++..+.++|+|||.++++.+...+..++...+.+ +|.
T Consensus 81 -~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 81 -GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFR 159 (179)
T ss_pred -CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCe
Confidence 689999988662 1246888999999999999888877778888888877 664
Q ss_pred ee
Q 021550 232 DI 233 (311)
Q Consensus 232 ~~ 233 (311)
..
T Consensus 160 ~~ 161 (179)
T TIGR00537 160 YE 161 (179)
T ss_pred EE
Confidence 33
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-14 Score=131.82 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=95.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----C
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----F 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~ 174 (311)
.+...+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+...|+.+ +.++.+|+.... +
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccc
Confidence 45667889999999999999999999999998777899999999999999999999999877 999999987532 2
Q ss_pred CCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 175 PDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.. +.||.|++|+|+. .++|.++.+.|||||+|+ |+.|
T Consensus 322 ~~---~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv-ystc 385 (434)
T PRK14901 322 WR---GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV-YATC 385 (434)
T ss_pred cc---ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 22 6799999998742 356899999999999998 4443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=107.52 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+.+.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+..+ +++...|+.. .++. .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~-~~~~-~ 85 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPE-ALED-S 85 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccc-cChh-h
Confidence 46677788888999999999999999999986 45899999999999999999998887765 8888888753 1111 1
Q ss_pred CCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+||.|+++.+ ....+++.+.+.|+|||.+++-
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 158999998653 3357899999999999999863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-13 Score=126.37 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=93.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+..+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++...|+.+ +++..+|+... .+.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~-~~~-- 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSF-SPE-- 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccc-ccC--
Confidence 46677888999999999999999999999988667899999999999999999999999865 99999998743 233
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..||+|++|+|+. ..+|..+.+.|+|||+++. +.|
T Consensus 317 -~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy-stc 378 (445)
T PRK14904 317 -EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY-ATC 378 (445)
T ss_pred -CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-EeC
Confidence 6799999998741 1468899999999999984 443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=126.15 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=108.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF 174 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~ 174 (311)
...++..+....+..+||||||+|.++..+|+.. |...++|+|+++.+++.|.+++...++.+ +.++.+|+.. ..+
T Consensus 111 ~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~ 188 (390)
T PRK14121 111 IDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELL 188 (390)
T ss_pred HHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhC
Confidence 3345666666677899999999999999999995 78999999999999999999999989887 9999999863 235
Q ss_pred CCcCCCCccEEEecCCChh-----------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 175 PDEFSGLADSIFLDLPQPW-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~-----------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++ +++|.|+++.|+|| .++..+.++|+|||.+.+.+...+......+.+.+
T Consensus 189 ~~---~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 189 PS---NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CC---CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 55 78999999999986 58999999999999999988888777777777655
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=113.98 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..++.. .+.++|+++|.++.+++.++++++..++.+ ++++.+|+.+. ... +.||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~~~---~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-QHE---EQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-ccc---CCccEEEe
Confidence 4889999999999999998865 467899999999999999999999888866 99999999753 122 68999998
Q ss_pred cC-CChhhHHHHHHhcccCCcEEEEecC
Q 021550 188 DL-PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 188 d~-~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. .+...+++.+.+.|+|||.++++..
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 64 3445678889999999999998754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=121.51 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=90.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GF 174 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~ 174 (311)
++..++..+. .++.+|||+|||+|.++..+++. ..+|+++|+++++++.|++++...++.++++++++|+.+. .+
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 3445666665 45689999999999999999987 4799999999999999999998888766699999998652 23
Q ss_pred CCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEe
Q 021550 175 PDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.. ++||+|+++ .+++..++.++.++|+|||.+++.
T Consensus 109 ~~---~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 109 LE---TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred cC---CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 33 789999864 457888999999999999999764
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=125.45 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=108.0
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.|.....++.++++.++.+|||+|||+|.++..++.. +.+++++|+++.+++.|++|+...++.+ +.+..+|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 345555666778888999999999999999998876654 5899999999999999999999999887 889999998
Q ss_pred CCCCCCcCCCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 171 GQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
+.+++. +.||+|++|+|- ...++..+.+.|+|||++++..|....+.+ .++. +| .+..
T Consensus 241 ~l~~~~---~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~---~~~~~g~-i~~~ 313 (329)
T TIGR01177 241 KLPLSS---ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES---LAEDAFR-VVKR 313 (329)
T ss_pred cCCccc---CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH---HHhhcCc-chhe
Confidence 755554 789999999772 246788999999999999988877654443 3444 56 4443
Q ss_pred EE
Q 021550 236 FE 237 (311)
Q Consensus 236 ~e 237 (311)
++
T Consensus 314 ~~ 315 (329)
T TIGR01177 314 FE 315 (329)
T ss_pred ee
Confidence 33
|
This family is found exclusively in the Archaea. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=120.11 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=89.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
-+|.+|||+|||.|.++..+|+. ++.|+++|+++++++.|+....+.++. +++....+++..... ++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~---~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG---GQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC---CCccEEE
Confidence 58999999999999999999988 599999999999999999998888765 566666665432232 6899997
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
+ +.|+|..++..+.+.+||||.+++..+.......+..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~ 172 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA 172 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH
Confidence 5 7899999999999999999999987665544333333
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=122.83 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=96.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+....++..++...++.+|||+|||+|+.++.++..+.++++|+++|+++++++.|+++++..|+.++++++.+|+.+ .
T Consensus 54 ~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~ 132 (234)
T PLN02781 54 VDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-A 132 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-H
Confidence 333335556667778899999999999999999998877899999999999999999999999998889999999974 2
Q ss_pred CCCc----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 174 FPDE----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ~~~~----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++.. ..+.||+||+|.. ..+.+++.+.+.|+|||.+++
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 0157999999875 446789999999999999886
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=120.99 Aligned_cols=133 Identities=24% Similarity=0.251 Sum_probs=103.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|.+|||+|||||.++++.++. +..+|+++|++|.+++.|++|+..+++...+.....+.. ..... +.||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~---~~~DvI 233 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPEN---GPFDVI 233 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhccc---CcccEE
Confidence 358999999999999999998887 578899999999999999999999998752333333332 22222 589999
Q ss_pred EecCCC-h-hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 186 FLDLPQ-P-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 186 ~~d~~~-~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
+.|.-. + ..+...+.+.|+|||++++..-..++...+.+.+.+ +|...+..+. .+|-..
T Consensus 234 VANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~--~eW~~i 295 (300)
T COG2264 234 VANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER--EEWVAI 295 (300)
T ss_pred EehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec--CCEEEE
Confidence 998642 2 256788999999999999988888999999999966 7876665544 455443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=112.38 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=101.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~D~~~~~~~~~ 177 (311)
.++..+...++.+|||+|||+|.++..+++. ..+++++|+++++++.+++++...+..+. +.+...|+.+ .+..
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~- 88 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG- 88 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc-
Confidence 3556666678899999999999999999987 48999999999999999999988776543 7888888864 4444
Q ss_pred CCCCccEEEecCCCh--------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 178 FSGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
..||+|+.++|-. ..+++++.++|+|||.+++..+.......+.+.+.+ +|
T Consensus 89 --~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 89 --DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF 166 (188)
T ss_pred --cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence 5799999876521 236899999999999998887776666777778877 66
Q ss_pred cee
Q 021550 231 TDI 233 (311)
Q Consensus 231 ~~~ 233 (311)
...
T Consensus 167 ~~~ 169 (188)
T PRK14968 167 EAE 169 (188)
T ss_pred eee
Confidence 543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=119.48 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=91.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++.. .+++.+..+|+...++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC
Confidence 3347788899999999999999999999888764 57999999999999999987653 245899999988666766
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+ ++..+++++.++|+|||.|++..+
T Consensus 116 ---~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 116 ---NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ---CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 78999986 233 567899999999999999998643
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=115.18 Aligned_cols=117 Identities=28% Similarity=0.320 Sum_probs=96.3
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
..+..|...+.++..+++.++.+|||+|||+|.++..+++.. ++|+++|+++++++.|++++...++.+ +++..+|
T Consensus 59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d 134 (212)
T PRK00312 59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGD 134 (212)
T ss_pred CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECC
Confidence 345667777788899999999999999999999999888773 589999999999999999999888876 9999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
... .++.. +.||+|+++.... .....+.+.|+|||.+++..
T Consensus 135 ~~~-~~~~~--~~fD~I~~~~~~~-~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWK-GWPAY--APFDRILVTAAAP-EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ccc-CCCcC--CCcCEEEEccCch-hhhHHHHHhcCCCcEEEEEE
Confidence 863 34321 6799999876533 35678899999999998753
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=126.22 Aligned_cols=136 Identities=27% Similarity=0.341 Sum_probs=108.7
Q ss_pred ceeeecccHHH--HHHhc--CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 89 TQILYIADISF--VIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 89 ~~~~~~~~~~~--i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
...++..+.+. ....+ ++.||.+|||+|+|+|+-+.+++..+++.+.|++.|+++.+++.+++|+.+.|+.+ +.+
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v 168 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VAL 168 (470)
T ss_pred CCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Confidence 34455555443 34556 78999999999999999999999999878999999999999999999999999987 888
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH-
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI- 216 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~- 216 (311)
...|.... .....+.||.|++|+|+. .++|..+.+.|||||+|| |++|.
T Consensus 169 ~~~D~~~~--~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTCT~ 245 (470)
T PRK11933 169 THFDGRVF--GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTCTL 245 (470)
T ss_pred EeCchhhh--hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECCCC
Confidence 88888642 111126799999999854 357889999999999985 98887
Q ss_pred --HHHHHHHHHHhh
Q 021550 217 --EQVQRSCESLRL 228 (311)
Q Consensus 217 --~~~~~~~~~l~~ 228 (311)
++.+..++.+-+
T Consensus 246 ~~eENE~vV~~~L~ 259 (470)
T PRK11933 246 NREENQAVCLWLKE 259 (470)
T ss_pred CHHHHHHHHHHHHH
Confidence 566666665544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=119.44 Aligned_cols=121 Identities=23% Similarity=0.257 Sum_probs=97.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++|+..+++.+.+.+...+.. .... ++||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~---~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIE---GKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccC---CCceEE
Confidence 457899999999999999887765 457999999999999999999998888766777766532 2233 689999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
+++.... ..++..+.+.|+|||.+++.....++..++.+.+.++|...
T Consensus 230 van~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 230 VANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred EEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 9876533 36788999999999999988888888888888887665443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=123.74 Aligned_cols=114 Identities=28% Similarity=0.427 Sum_probs=94.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+++.++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+.+.|+.+ +++..+|+.... .. .
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~-~~-~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVH-EK-F 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccccc-ch-h
Confidence 45667888999999999999999999999988677899999999999999999999999877 999999987421 11 1
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
.+.||+|++|+|+. ..+|..+.+.|+|||.++ |+.|.
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv-ystcs 381 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV-YSTCT 381 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE-EEcCC
Confidence 15799999998732 246889999999999998 54443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=123.36 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=94.8
Q ss_pred eeecccHH--HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 91 ~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
.++..+.+ .++..+++.+|.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++...|+. +.++.+|
T Consensus 225 ~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D 301 (427)
T PRK10901 225 WVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGD 301 (427)
T ss_pred eEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcC
Confidence 44444444 46678889999999999999999999999986 3489999999999999999999998874 6788999
Q ss_pred CCCCC--CCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 169 IQGQG--FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 169 ~~~~~--~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+.... +.. ++||.|++|+|+. ..++..+.+.|+|||.++ |+.|
T Consensus 302 ~~~~~~~~~~---~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv-ystc 373 (427)
T PRK10901 302 ARDPAQWWDG---QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL-YATC 373 (427)
T ss_pred cccchhhccc---CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 87421 222 6799999998743 147889999999999998 4443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=121.05 Aligned_cols=108 Identities=28% Similarity=0.351 Sum_probs=84.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..+++.++++||++|||||||.|.++..+++.. +++|+++.+|++..+.|++.+...|+.+.+++...|..+ ++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~~- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--LP- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--cC-
Confidence 3458889999999999999999999999999997 589999999999999999999999999889999999864 33
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+||.|++ +++ ....+++.+.++|+|||.+++-
T Consensus 126 ---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 ---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 47999874 332 3357899999999999999863
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=118.29 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..++..+++.||++|||||||.|.+++.+|+.. +.+|+|+++|+++.+.+++++...|+..++++...|..+ +.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~~- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--FE- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--cc-
Confidence 3458899999999999999999999999999997 699999999999999999999999999779999998864 44
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||.|++ +.. ....++..+.+.|+|||.+++.+
T Consensus 136 ---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 45999884 222 34578999999999999998753
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=121.18 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.|....++..++...++.+|||+|+++|+.+++++..++++++|+++|.+++..+.|++++++.|+.++++++.+|+.+
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e- 181 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE- 181 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-
Confidence 4444445666677778899999999999999999999877899999999999999999999999998889999999874
Q ss_pred CCCC----cCCCCccEEEecCCC--hhhHHHHHHhcccCCcEEEE
Q 021550 173 GFPD----EFSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 173 ~~~~----~~~~~~D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~ 211 (311)
.++. ...+.||+||+|.+. .+.+++.+.+.|+|||.+++
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2211 011579999999874 46789999999999999986
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=123.54 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=98.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~v~~~~~D~~~~~~~~ 176 (311)
+++..+....+.+|||+|||+|.++..++++. |..+|+++|+|+.+++.|++|++.++.. .++++...|... .++.
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~ 296 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP 296 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCC
Confidence 46777766666799999999999999999884 7889999999999999999999877643 247888888763 3443
Q ss_pred cCCCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeE
Q 021550 177 EFSGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
.+||+|++|+|- .++++..+.+.|+|||.+++.... .......|++.|.+.+.
T Consensus 297 ---~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr---~l~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 297 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR---HLDYFHKLKKIFGNCTT 359 (378)
T ss_pred ---CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec---CcCHHHHHHHHcCCceE
Confidence 589999999882 256789999999999999876422 12233445444555543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=101.81 Aligned_cols=90 Identities=29% Similarity=0.448 Sum_probs=74.9
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL----- 187 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~----- 187 (311)
||+|||+|..+..+++. +..+|+++|+++++++.++++....+ +.+...|+...++++ ++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~---~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD---NSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T---T-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc---cccccccccccee
Confidence 89999999999999998 57999999999999999998765433 669999998887887 89999985
Q ss_pred cCCChhhHHHHHHhcccCCcEEEE
Q 021550 188 DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
..+++..+++++.++|||||++++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 346777899999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=123.13 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=86.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|+++....+...+++++.+|+.+..++. +.||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEEE
Confidence 46789999999999999988864 57999999999999999988766554445999999987544444 7899998
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+ +.+++..++..+.++|||||.+++..+.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 5778899999999999999999976554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=113.98 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=85.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+++.+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++....++.+ +++...|+....++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---- 93 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD---- 93 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC----
Confidence 667777778899999999999999999986 4799999999999999999988888765 88888898754443
Q ss_pred CCccEEEecCC-------ChhhHHHHHHhcccCCcEEEE
Q 021550 180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 180 ~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.||+|++... +...++.++.++|+|||.+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 57999985322 345789999999999999654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-14 Score=107.22 Aligned_cols=101 Identities=30% Similarity=0.421 Sum_probs=85.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V~ 186 (311)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.|+.++...+...++++..+|+.+. .++. ++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD---GKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT---T-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC---ceeEEEE
Confidence 5799999999999999999883 6899999999999999999999998877799999999752 2444 7899999
Q ss_pred ecCCCh-------------hhHHHHHHhcccCCcEEEEecC
Q 021550 187 LDLPQP-------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~d~~~~-------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|+|-. ..+++.+.+.|+|||.++++.|
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998732 3578999999999999998754
|
... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=125.64 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=89.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--CC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~ 176 (311)
.++..+++.+|.+|||+|||+|..+.++++.++ .++|+++|+++++++.+++|+++.|+...+.+..+|...... +.
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 467788999999999999999999999999874 789999999999999999999998876334446666543221 22
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEE
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~ 211 (311)
+.||.|++|+|+. ..+|.++.+.|+|||.++.
T Consensus 308 ---~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 308 ---EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred ---cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6799999987622 3578899999999999984
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=119.38 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=94.8
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
..|...+.+++.++++++++|||+|||+|.++..+++..+..+.|+++|+++++++.|++++...+..+ +.++.+|+..
T Consensus 64 ~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~ 142 (322)
T PRK13943 64 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYY 142 (322)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhh
Confidence 356666678888999999999999999999999999987545789999999999999999999888865 8999999864
Q ss_pred CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 172 QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ++.. ..||+|+++...+ .....+.+.|+|||.+++..
T Consensus 143 ~-~~~~--~~fD~Ii~~~g~~-~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 G-VPEF--APYDVIFVTVGVD-EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c-cccc--CCccEEEECCchH-HhHHHHHHhcCCCCEEEEEe
Confidence 2 3221 5799999875432 24456788999999988743
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=120.06 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=98.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|++|||+|||||.+++..++. +..+|+++|+++.+++.|++|+..+++.+++.+. .. ..... +.||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~~~---~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDLVE---GKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCTCC---S-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccccc---ccCCEE
Confidence 567899999999999999988876 5689999999999999999999999998766553 11 22333 789999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.|.-.. ...+..+.+.|+|||.+++..-..++...+.+.++++|.-.+..+ ..+|-..
T Consensus 230 vANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~--~~~W~~l 290 (295)
T PF06325_consen 230 VANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEERE--EGEWVAL 290 (295)
T ss_dssp EEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEE--ETTEEEE
T ss_pred EECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEE--ECCEEEE
Confidence 9987644 346677889999999999988888889999999876665544333 3445443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-13 Score=112.65 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=93.0
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----- 173 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----- 173 (311)
+..... +.++.+|||+|||+|.++..+++..++.++|+++|+++ + ....+ +.++++|+....
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~-v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVG-VDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCC-cEEEecCCCChHHHHHH
Confidence 334444 57889999999999999999999987778999999988 1 12334 889999998532
Q ss_pred ---CCCcCCCCccEEEecCCC-----h-----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceee
Q 021550 174 ---FPDEFSGLADSIFLDLPQ-----P-----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 174 ---~~~~~~~~~D~V~~d~~~-----~-----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
+.. ++||+|++++.. + ..+|+.+.++|+|||.|++-....+.+.++...++..|..++
T Consensus 110 ~~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~ 186 (209)
T PRK11188 110 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 186 (209)
T ss_pred HHHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEE
Confidence 333 789999987621 1 247899999999999999866666777788888877787665
Q ss_pred E
Q 021550 235 T 235 (311)
Q Consensus 235 ~ 235 (311)
.
T Consensus 187 ~ 187 (209)
T PRK11188 187 V 187 (209)
T ss_pred E
Confidence 4
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=115.44 Aligned_cols=115 Identities=25% Similarity=0.282 Sum_probs=92.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+..+++.+++.+..+|+.+ .++. +.||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~---~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPG---RKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCC---CCccEEE
Confidence 456799999999999999999885 5689999999999999999999999887679999999863 3443 5799999
Q ss_pred ecCCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 187 LDLPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 187 ~d~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+|+|- | ..++..+.+.|+|||.+++-... .+ ..+.+.+..
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~ 264 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPD 264 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHh
Confidence 98762 1 23578888999999999875553 33 455565554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=117.19 Aligned_cols=118 Identities=26% Similarity=0.323 Sum_probs=94.5
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+....++..++......+||||||+.|+.++++++.+.++++|+++|++++..+.|++++++.|+.++++++.+|+.+
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~- 108 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE- 108 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH-
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh-
Confidence 3444444444555566789999999999999999999877899999999999999999999999998889999999864
Q ss_pred CCC----CcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 173 GFP----DEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 173 ~~~----~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.++ ....+.||+||+|.. ....++..+.+.|+|||.+++
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEE
Confidence 111 100157999999876 345788999999999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=118.50 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|+++ .+++..+|+... .+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~- 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDW-KPK- 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC-CCC-
Confidence 347788888889999999999999999999886 678999999999999998752 277888998643 233
Q ss_pred CCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|+++ .+++..++.++.+.|+|||.+++..
T Consensus 88 --~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 88 --PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred --CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 689999864 4677889999999999999998754
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=112.56 Aligned_cols=123 Identities=28% Similarity=0.328 Sum_probs=98.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +++..+|+.. .++. ++||+|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~~~~---~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFE-PLPG---GKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhc-cCcC---CceeEEEE
Confidence 44699999999999999999885 56799999999999999999999888865 9999999874 4544 78999999
Q ss_pred cCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 188 d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
|+|-. ..++..+.+.|+|||.+++... ..+...+.+.+.+ +|..++.
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-ccHHHHHHHHHHhCCCCceEE
Confidence 87611 1357889999999999986543 3456677777777 7876665
Q ss_pred EE
Q 021550 236 FE 237 (311)
Q Consensus 236 ~e 237 (311)
..
T Consensus 240 ~~ 241 (251)
T TIGR03534 240 RK 241 (251)
T ss_pred Ee
Confidence 43
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=114.07 Aligned_cols=125 Identities=28% Similarity=0.295 Sum_probs=95.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++|+..+++...+.+..+| ..||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467899999999999999877664 3457999999999999999999888764323322211 269999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEE
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
+.+.... ..+++.+.+.|+|||.+++.....++...+.+.+.+ +|...+..+. .+|..
T Consensus 184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~--~~W~~ 244 (250)
T PRK00517 184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER--GEWVA 244 (250)
T ss_pred EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe--CCEEE
Confidence 9876532 357889999999999999887778888888888887 6876654442 44444
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-13 Score=116.77 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+......+++.+...++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++.. . ..++.+|+...
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~~ 97 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCcccC
Confidence 3344445677777667889999999999999888764 4799999999999999987632 1 45778898765
Q ss_pred CCCCcCCCCccEEEecC-----CChhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 173 GFPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
++++ ++||+|+++. +++..++.++.++|+|||.+++..+....+.+
T Consensus 98 ~~~~---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e 148 (251)
T PRK10258 98 PLAT---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPE 148 (251)
T ss_pred cCCC---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHH
Confidence 6665 7899998754 46678999999999999999986554333333
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=114.17 Aligned_cols=130 Identities=23% Similarity=0.278 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+....+.+|||+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..++..+. .+...|.. ....
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~-~~v~--- 222 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY-EPVE--- 222 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc-cccc---
Confidence 57788888877899999999999999999995 689999999999999999999999998873 67777776 3333
Q ss_pred CCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEe
Q 021550 179 SGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
++||.|++|+|- -|+++..+.+.|++||.|.++.. ........|.+-|.+++++..
T Consensus 223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~ 288 (300)
T COG2813 223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLAK 288 (300)
T ss_pred -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCChHHHHHHhcCCEEEEEe
Confidence 579999999982 25789999999999999987644 223344455555776665543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=118.32 Aligned_cols=131 Identities=22% Similarity=0.285 Sum_probs=100.7
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+++.+.+ .++.+|||+|||+|.++..+++.+ +..+|+++|+++++++.|+++... . ++++..+|+...+++.
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---~-~i~~i~gD~e~lp~~~-- 176 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---K-ECKIIEGDAEDLPFPT-- 176 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---c-CCeEEeccHHhCCCCC--
Confidence 4444444 467899999999999999998886 457999999999999999987542 2 3788999998666665
Q ss_pred CCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH----------------HHHHHHHHHHhh-cCceeeEE
Q 021550 179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI----------------EQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 179 ~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~-~f~~~~~~ 236 (311)
+.||+|++. .+++..+++++.++|+|||.+++..+.. ....++.+.+++ +|..++..
T Consensus 177 -~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 177 -DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred -CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 789999863 4677789999999999999998754321 124566677777 79887765
Q ss_pred Ee
Q 021550 237 EI 238 (311)
Q Consensus 237 e~ 238 (311)
..
T Consensus 256 ~i 257 (340)
T PLN02490 256 RI 257 (340)
T ss_pred Ec
Confidence 43
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=112.31 Aligned_cols=111 Identities=30% Similarity=0.401 Sum_probs=92.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.++++... ...++.+...|+....++.
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~-- 85 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD-- 85 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC--
Confidence 366788889999999999999999999999876678999999999999999987332 2334889999987655555
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.||+|++ +.+++..++.++.++|+|||.+++..+
T Consensus 86 -~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 -GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 78999985 456788899999999999999987543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=110.97 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=97.0
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe--
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-- 187 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-- 187 (311)
++|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...++.+++++...|+....++ +.||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeehHH
Confidence 479999999999999999886 56899999999999999999998888887899999998644333 67999984
Q ss_pred ---cCCChhhHHHHHHhcccCCcEEEEecCCH---------------HHHHHHHHHHhh-cCceeeEEE
Q 021550 188 ---DLPQPWLAIPSAKKMLKQDGILCSFSPCI---------------EQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 188 ---d~~~~~~~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~-~f~~~~~~e 237 (311)
+.++...+++++.++|+|||.+++..+.. ....++.+.+.+ +|..++..+
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 45677789999999999999999754321 123445556655 677665444
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=116.83 Aligned_cols=133 Identities=20% Similarity=0.128 Sum_probs=97.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..++..+|.+|||+|||+|.++..++.. +...|+++|+++.++..++......+...++.+..+|+...++ .
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~--- 187 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L--- 187 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence 455666567899999999999999999887 3457999999999887655433333323358999999876544 3
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec------------CCH-----------HHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS------------PCI-----------EQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~------------~~~-----------~~~~~~~~~l~~-~f 230 (311)
+.||+|++ +..++..++.++.+.|+|||.+++-. |.. .....+...|.+ +|
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF 267 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF 267 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence 78999986 44678889999999999999998631 100 123456667766 78
Q ss_pred ceeeEEEe
Q 021550 231 TDIRTFEI 238 (311)
Q Consensus 231 ~~~~~~e~ 238 (311)
..++..+.
T Consensus 268 ~~i~~~~~ 275 (322)
T PRK15068 268 KDVRIVDV 275 (322)
T ss_pred ceEEEEeC
Confidence 88776654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=115.09 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=94.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..++..+|++|||+|||+|.++..++.. +...|+++|.|+.++..++..-...+....+.+...++.+....
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---- 186 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---- 186 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----
Confidence 556667778899999999999999888876 34689999999999876543322222233477888877643322
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC------------CH-----------HHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP------------CI-----------EQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~------------~~-----------~~~~~~~~~l~~-~f 230 (311)
..||+|++ +.+++..+|.++.+.|+|||.|++-.. .. .....+...+++ +|
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 57999985 457888899999999999999986311 00 023455566666 78
Q ss_pred ceeeEEEe
Q 021550 231 TDIRTFEI 238 (311)
Q Consensus 231 ~~~~~~e~ 238 (311)
.+++....
T Consensus 267 ~~V~i~~~ 274 (314)
T TIGR00452 267 ENFRILDV 274 (314)
T ss_pred eEEEEEec
Confidence 88876543
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=108.42 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=88.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-------- 173 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-------- 173 (311)
....+.++.+|||+|||+|.++..+++...+.++|+++|+++.+ ...+ +.+...|+.+..
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHH
Confidence 34567899999999999999999999887667899999999864 1223 778888886422
Q ss_pred CCCcCCCCccEEEecCCC----------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 174 FPDEFSGLADSIFLDLPQ----------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~----------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
++. ++||+|+++.+. .+.++..+.+.|+|||.+++.....+.+.++...++..|...
T Consensus 94 ~~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~ 166 (188)
T TIGR00438 94 VGD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKV 166 (188)
T ss_pred hCC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceE
Confidence 222 579999986421 146889999999999999986666666777777776655333
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=115.00 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.++.+|||+|||+|..+..+++.+ .+..+++++|+|+.|++.|++++...+..++++++.+|+...++ ..+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence 4578899999999999999888854 46789999999999999999999887776679999999875332 45898
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|++.. + ....+++++.+.|+|||.|++..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 87532 1 23468999999999999998853
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=112.80 Aligned_cols=122 Identities=25% Similarity=0.267 Sum_probs=96.1
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+.+|||+|||+|.+++.++... +..+|+++|+++++++.|++|+..+++.+++++..+|+.+ .++. ..||+|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~---~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG---QKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC---CCccEEEEC
Confidence 3699999999999999999885 5689999999999999999999988887669999999873 4443 479999998
Q ss_pred CCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEE
Q 021550 189 LPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTF 236 (311)
Q Consensus 189 ~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~ 236 (311)
+|- | ..++..+.+.|+|||.+++-.. ..|...+.+.+.. +|.+++..
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~~q~~~~~~~~~~~~~~~~~~~~ 268 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-NWQQKSLKELLRIKFTWYDVENG 268 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHhcCCCceeEEe
Confidence 751 1 1357788899999999986444 4556666666663 57665544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=110.14 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..++++ +.+|+++|+++.+++.++++....++. +.+...|+....++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~--- 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN--- 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc---
Confidence 3666777777789999999999999999986 479999999999999999988877764 67777777543332
Q ss_pred CCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++||+|++... ....+++.+.+.|+|||.+++.
T Consensus 93 -~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 -EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999975422 2346899999999999996554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-12 Score=115.10 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=102.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.+++.++... +..+|+++|+|+++++.|++|+..++. ++++.++|+.+..++. .++||+|
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~--~~~FDLI 323 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS--EGKWDII 323 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc--CCCccEE
Confidence 3466799999999999999998774 578999999999999999999988774 4999999986433322 1579999
Q ss_pred EecCCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceee
Q 021550 186 FLDLPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 186 ~~d~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
++|+|- | ..++..+.+.|+|||.+++... ..|...+.+.+.+ +|..++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHHHHHHHHHCCCcEEE
Confidence 999872 1 1356667789999999886554 4677788888877 687766
Q ss_pred EEEeeceeeEEe
Q 021550 235 TFEILLRTYEIR 246 (311)
Q Consensus 235 ~~e~~~r~~~v~ 246 (311)
....+.....+.
T Consensus 403 v~kDl~G~dR~v 414 (423)
T PRK14966 403 TLPDLAGLDRVT 414 (423)
T ss_pred EEEcCCCCcEEE
Confidence 655544444433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=114.64 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=88.5
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
....++..+.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++++ .+ +.+..+|+... .+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~~-~~ 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIASW-QP 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhcc-CC
Confidence 34457788888889999999999999999999885 5789999999999999998763 23 78888998642 23
Q ss_pred CcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. .+||+|+++ .+++..++.++.+.|+|||.+++..+
T Consensus 91 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 P---QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred C---CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3 689999864 34667899999999999999988654
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=107.18 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=91.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++...+...++.+...|+....++.
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD-- 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC--
Confidence 356666777889999999999999999998863368999999999999999999876655556899999987644444
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++ +.+++..++..+.+.|+|||.+++.
T Consensus 120 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 120 -NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred -CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 68999975 3557778999999999999998864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=111.90 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.++.+|||+|||+|.++..+++.+ .+..+++++|+++++++.|++++...+...+++++.+|+....+ ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence 3578899999999999999999875 35789999999999999999998876655568999999975433 34788
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++.. + +...+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 76532 1 345789999999999999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=122.88 Aligned_cols=107 Identities=26% Similarity=0.244 Sum_probs=90.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+++++.|+++.. +...++++..+|+....+++
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~-- 330 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD-- 330 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC--
Confidence 46677778889999999999999999999875 5799999999999999998865 33445899999998666665
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++||+|++ +.+++..++.++.++|+|||.+++.
T Consensus 331 -~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 331 -NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred -CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 78999985 4568889999999999999999875
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=120.30 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=108.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----C
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----F 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~ 174 (311)
.++.++.+.++.+|||+|||+|.+++.+++. ..+|+++|+++++++.|++|+..+++.+ +++..+|+.+.. +
T Consensus 288 ~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 288 RALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhh
Confidence 4566777788999999999999999999987 3799999999999999999999888876 999999986411 2
Q ss_pred CCcCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceeeEEee
Q 021550 175 PDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~~v~~ 247 (311)
.. +.||+|++|+|.. ...+..+.+ ++|++.+++.+.......++......+ ...++.++.+.+.+|++.
T Consensus 364 ~~---~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 364 AL---GGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred hc---CCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 22 5799999999843 455655544 689888887665555444444443444 567788888888888874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=113.01 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=86.0
Q ss_pred cCCCCCCEEEEEcccccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 104 LELVPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
....++++|+|+|||+|.++ +.++....++++++++|+++++++.|++++.. .++.++++|..+|+.+. .+. .+.
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~--l~~ 195 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TES--LKE 195 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccc--cCC
Confidence 33347799999999987554 44454556889999999999999999999964 78888899999999752 221 167
Q ss_pred ccEEEecC------CChhhHHHHHHhcccCCcEEEEec
Q 021550 182 ADSIFLDL------PQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 182 ~D~V~~d~------~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
||+||++. +++..+++++.+.|+|||.+++-+
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999754 577889999999999999999754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=110.20 Aligned_cols=127 Identities=28% Similarity=0.290 Sum_probs=96.8
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
......++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++. .....++.+..+|+.. .++. +.
T Consensus 102 ~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~---~~ 175 (275)
T PRK09328 102 EALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPG---GR 175 (275)
T ss_pred HhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCC---Cc
Confidence 34455678899999999999999999886 57899999999999999999987 3333459999999863 3433 68
Q ss_pred ccEEEecCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c
Q 021550 182 ADSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N 229 (311)
Q Consensus 182 ~D~V~~d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~ 229 (311)
||+|++++|-. ..++.++.+.|+|||.+++-.. ..+...+...+.+ +
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~~~~~~~~l~~~g 254 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQGEAVRALLAAAG 254 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chHHHHHHHHHHhCC
Confidence 99999987621 2356777799999999987443 3455666667766 6
Q ss_pred CceeeE
Q 021550 230 FTDIRT 235 (311)
Q Consensus 230 f~~~~~ 235 (311)
|.+++.
T Consensus 255 f~~v~~ 260 (275)
T PRK09328 255 FADVET 260 (275)
T ss_pred CceeEE
Confidence 765554
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-12 Score=113.69 Aligned_cols=136 Identities=20% Similarity=0.230 Sum_probs=99.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+......+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..+++. .++...|+.. .. .
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-~~-~-- 259 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-DI-K-- 259 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-cc-C--
Confidence 45666665556799999999999999999884 6679999999999999999999988864 4667777753 22 2
Q ss_pred CCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 179 SGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|++++|- .+.++..+.+.|+|||.++++....-... ..+.+.|...+++. -...|.+.
T Consensus 260 -~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~---~~l~~~Fg~~~~la-~~~~f~v~ 332 (342)
T PRK09489 260 -GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DLLDETFGSHEVLA-QTGRFKVY 332 (342)
T ss_pred -CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH---HHHHHHcCCeEEEE-eCCCEEEE
Confidence 689999998872 25688999999999999987654332222 33334465555443 22445554
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=109.53 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=90.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.|++|+..++ +++..+|+.+ .++....+.||+|++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~-~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD-ALPTALRGRVDILAA 159 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh-hcchhcCCCEeEEEE
Confidence 34689999999999999999875 45799999999999999999998765 4678888863 222111257999999
Q ss_pred cCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 188 d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
|+|.. ..++..+.+.|+|||.+++... .++...+...+++ +|.
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARAGLI 234 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHCCCC
Confidence 98721 1456677899999999986544 4567788888877 553
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=108.64 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=81.6
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
+..+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...++ + +++...|+....+ . +
T Consensus 113 ~~~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~-~---~ 183 (287)
T PRK12335 113 LEAVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI-Q---E 183 (287)
T ss_pred HHHhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc-c---C
Confidence 33334344569999999999999999886 47999999999999999999988877 3 8888888865334 3 6
Q ss_pred CccEEEecC-------CChhhHHHHHHhcccCCcEEEEe
Q 021550 181 LADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 181 ~~D~V~~d~-------~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+||+|++.. .....++.++.+.|+|||+++++
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 899997542 23346899999999999996654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=106.53 Aligned_cols=113 Identities=27% Similarity=0.432 Sum_probs=94.2
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCcCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~~~~~~D~V~~ 187 (311)
.+||||||.|.++..+|... |+..++|+|++...+..|.+.+...++.| +.++.+|+.. ..+++ +++|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~---~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP---GSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT---TSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC---CchheEEE
Confidence 89999999999999999985 89999999999999999999999999987 9999999874 12344 78999999
Q ss_pred cCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 188 DLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+.|+|| .++..+.+.|+|||.|.+.+...+....+.+.+..
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 999997 58999999999999999999988888888888876
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=110.27 Aligned_cols=101 Identities=28% Similarity=0.340 Sum_probs=84.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
..+|||+|||+|.++..++... +..+|+++|+|+.+++.|++|+..+++.+++++..+|+.+ .++. ++||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~---~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPG---RRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCC---CCccEEEEC
Confidence 3689999999999999999875 6789999999999999999999998887679999999863 4443 579999998
Q ss_pred CCC----------------h--------------hhHHHHHHhcccCCcEEEEecC
Q 021550 189 LPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|- | ..++..+.+.|+|||.+++-..
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 752 0 2457888899999999987443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=120.47 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=99.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.|++|+..+++.+++.+..+|+.. .++. +.||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~---~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEK---QKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcC---CCccEEEE
Confidence 45799999999999999999875 5789999999999999999999988887779999999863 3443 68999999
Q ss_pred cCCC-----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 188 DLPQ-----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 188 d~~~-----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
|+|- | ..++..+.+.|+|||.+++-. ...|...+.+.+.+ +|..+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchHHHHHHHHHhcCCCceEE
Confidence 8761 1 124667888999999998643 34567777777776 6766665
Q ss_pred EEeec
Q 021550 236 FEILL 240 (311)
Q Consensus 236 ~e~~~ 240 (311)
...+.
T Consensus 292 ~~D~~ 296 (506)
T PRK01544 292 YKDLQ 296 (506)
T ss_pred EecCC
Confidence 54443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=108.54 Aligned_cols=124 Identities=21% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++.. |..+++++|+++++++.|++++...+..++++++.+|+.+ .+.. ..++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~-~l~~-~~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE-YIAV-HRHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH-HHHh-CCCCCCEE
Confidence 3456799999999999999999886 6789999999999999999998665544569999999864 1221 11579999
Q ss_pred EecCCC---------hhhHHHHHHhcccCCcEEEEecC-CHHHHHHHHHHHhhcCce
Q 021550 186 FLDLPQ---------PWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLRLNFTD 232 (311)
Q Consensus 186 ~~d~~~---------~~~~l~~~~~~LkpgG~lv~~~~-~~~~~~~~~~~l~~~f~~ 232 (311)
++|..+ ..++++.+.+.|+|||.+++... .........+.+++-|..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 987532 14789999999999999997432 233455666677665653
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=112.76 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=96.4
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|....++..++...+..+|||+|++.|+.+++++..+++.++|+++|.+++..+.|++++...|+.++|+++.+|+.+ .
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-~ 143 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-V 143 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-H
Confidence 444455555666667789999999999999999999877899999999999999999999999998889999999874 2
Q ss_pred CCCc-----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 174 FPDE-----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ~~~~-----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++.. ..++||+||+|.. ....+++.+.+.|+|||.|++
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 2211 0158999999875 334678889999999999986
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=108.28 Aligned_cols=121 Identities=29% Similarity=0.372 Sum_probs=93.5
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+|||+|||||.+++.++... +...|+++|+|+++++.|++|+..+++.+ +.++..|.. ..+. +.||+|++|+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf-~~~~----~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLF-EPLR----GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeecc-cccC----CceeEEEeCCC
Confidence 79999999999999999985 67899999999999999999999999844 666666765 3343 58999999987
Q ss_pred ----------------Ch--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c-CceeeEEEe
Q 021550 191 ----------------QP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTDIRTFEI 238 (311)
Q Consensus 191 ----------------~~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~-f~~~~~~e~ 238 (311)
+| ..++..+.+.|+|||.+++-.. .+|...+.+.+.. + |..+.....
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~~q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-LTQGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-CCcHHHHHHHHHhcCCceEEEEEec
Confidence 11 1467788999999999886544 4556667777766 5 444444444
Q ss_pred e
Q 021550 239 L 239 (311)
Q Consensus 239 ~ 239 (311)
.
T Consensus 265 ~ 265 (280)
T COG2890 265 L 265 (280)
T ss_pred C
Confidence 3
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-12 Score=105.23 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=90.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++....+.+..+|.|+|||+|..|..|++++ |.+.++|+|.|++|++.|+.+ +.+ .+|..+|+.... ++
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~-p~--- 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK-PE--- 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC-CC---
Confidence 6677778888999999999999999999998 789999999999999999765 334 889999997522 33
Q ss_pred CCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 180 ~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|++|.| .|+....|..+...|.|||.+.+-.|..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 578998876 4677789999999999999999987744
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.3e-11 Score=102.26 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|.++..+++.....++++++|+++.+++.++++.. ...++.+..+|+.+..++.
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~--- 104 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED--- 104 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC---
Confidence 5556666688999999999999999999886323799999999999999998865 2334889999987654444
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++ +.+++..+++.+.+.|+|||.+++..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 68999875 45678889999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-12 Score=105.77 Aligned_cols=136 Identities=24% Similarity=0.257 Sum_probs=102.6
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-----CCCCccE
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLADS 184 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-----~~~~~D~ 184 (311)
.+|||||+|||..+.++++++ |.......|.++..+...+..+...++.|....+..|+....++-. ..+.||+
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 369999999999999999998 7788999999999988888888888888867778888886434331 2258999
Q ss_pred EEe-cC------CChhhHHHHHHhcccCCcEEEEecCCH-------HHHHHHHHHHhh-----cCceeeEEEeeceeeEE
Q 021550 185 IFL-DL------PQPWLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL-----NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 185 V~~-d~------~~~~~~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~-----~f~~~~~~e~~~r~~~v 245 (311)
||+ |+ .....++..+.+.|++||.|++|.|+. +.-..+-..|+. |.++++.++.+.+....
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 984 22 233457889999999999999999965 456777778876 35555544444444444
Q ss_pred e
Q 021550 246 R 246 (311)
Q Consensus 246 ~ 246 (311)
.
T Consensus 186 ~ 186 (204)
T PF06080_consen 186 E 186 (204)
T ss_pred c
Confidence 3
|
The function of this family is unknown. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=108.75 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.++.+|||+|||+|.++..+++.+... ..++++|+|+.+++.|+++. .+ +.+..+|+...++++ ++||+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~~~---~sfD~ 154 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPFAD---QSLDA 154 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCCcC---CceeE
Confidence 455789999999999999998876322 47999999999999998652 23 788889987666766 78999
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
|+.... + ..+.++.++|+|||.+++..|....+.++.+.+
T Consensus 155 I~~~~~-~-~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 155 IIRIYA-P-CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EEEecC-C-CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 986433 2 357899999999999999988776665555544
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=110.27 Aligned_cols=126 Identities=29% Similarity=0.429 Sum_probs=101.0
Q ss_pred CCceeeecccHH--HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 87 HRTQILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 87 ~~~~~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
+....++..+.+ +....+++.||.+|||+++++|+-|.++++.+.+. ..|+++|+++..++..++|+.+.|+.+ +.
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~ 211 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VI 211 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eE
Confidence 344555655544 35578899999999999999999999999998653 456999999999999999999999988 88
Q ss_pred EEEecCCCC--CCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGVRDIQGQ--GFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~~D~~~~--~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+...|.... .+.. .+.||.|++|.|+. +++|..+.++|||||.|+ |+.
T Consensus 212 ~~~~d~~~~~~~~~~--~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV-YST 288 (355)
T COG0144 212 VVNKDARRLAELLPG--GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV-YST 288 (355)
T ss_pred EEecccccccccccc--cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence 888887532 1222 03599999998843 367999999999999998 877
Q ss_pred CH
Q 021550 215 CI 216 (311)
Q Consensus 215 ~~ 216 (311)
|.
T Consensus 289 CS 290 (355)
T COG0144 289 CS 290 (355)
T ss_pred cC
Confidence 66
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=118.49 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEF 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~ 178 (311)
...++..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.|+++....+. +++++.+|+...+ +++
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fed-- 485 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEK-- 485 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCC--
Confidence 345566678999999999999998888875 679999999999999999988765442 3788889986533 444
Q ss_pred CCCccEEEecCC------------------ChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLP------------------QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~------------------~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|+++.+ +...+++++.++|||||.+++...
T Consensus 486 -eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 486 -ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 78999986421 235789999999999999998754
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-12 Score=108.37 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----cEEEEEecCCCCCCCCcCCCCcc
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-----~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
|.+|||+|||+|.++..||+. ++.|+|+|.++++++.|++........+ ++++...|++. .. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~----~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT----GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--cc----cccc
Confidence 478999999999999999998 5999999999999999999844332222 24455555542 22 5699
Q ss_pred EEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+|++ +..+|.++++.+.+.|+|+|.+++-.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 9985 56788999999999999999998743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=106.94 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=97.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C--CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V--SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~--~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
.+.+||++|||.|..+..++++. +..+|+++|+++++++.|++++...+ . +.+++++.+|+.. .+.. ..+.||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-~l~~-~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-FVAE-TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH-HHhh-CCCccc
Confidence 45799999999999999998762 45799999999999999999886532 1 4569999999874 2221 126899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEee
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+|++|.++| .++++.+.+.|+|||.+++.... .+.+..+.+.+++-|.....+...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~ 221 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAA 221 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeE
Confidence 999987655 35788999999999999986432 244556666666667776665543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=109.94 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..++..++.+|||+|||+|.++..++++. |..+++++|. +.+++.+++++...++.++++++.+|+.+..++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 347777888889999999999999999999996 7789999997 789999999999999888899999998754443
Q ss_pred CCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+|+|++ +.++. ..+++++.+.|+|||++++..
T Consensus 215 ---~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 ---EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred ---CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3698764 22322 368999999999999999874
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=109.00 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=109.3
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DI 169 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~ 169 (311)
.+.|..+..++.++.+++|+.|||--||||++.+.+.-. +++++|.|++..|++-|+.|++..++.+ ..+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence 355666667889999999999999999999999886654 6899999999999999999999998877 655555 99
Q ss_pred CCCCCCCcCCCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeE
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
...++++ ..+|.|+.|+|- ..++++.+.+.|++||++++..|. .........+|.-+..
T Consensus 256 ~~lpl~~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 256 TNLPLRD---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFKVLGR 328 (347)
T ss_pred ccCCCCC---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHhhcCceEEEE
Confidence 8877776 579999999982 136899999999999999998882 2222222236776666
Q ss_pred EEee
Q 021550 236 FEIL 239 (311)
Q Consensus 236 ~e~~ 239 (311)
+..+
T Consensus 329 ~~~~ 332 (347)
T COG1041 329 FTMR 332 (347)
T ss_pred EEEe
Confidence 6555
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=114.20 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=102.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE- 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~- 177 (311)
.++..+.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ ++++.+|+.+ .++..
T Consensus 283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~-~l~~~~ 357 (431)
T TIGR00479 283 RALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLET-VLPKQP 357 (431)
T ss_pred HHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHH-HHHHHH
Confidence 3556667788899999999999999999987 3689999999999999999999988865 9999999864 11110
Q ss_pred -CCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c--CceeeEEEeeceeeEE
Q 021550 178 -FSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTDIRTFEILLRTYEI 245 (311)
Q Consensus 178 -~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~--f~~~~~~e~~~r~~~v 245 (311)
....||+|++|+|.. ..+++.+. .++|++.+++.+. ...+.+-...|.+ + ...+..++.+...+|+
T Consensus 358 ~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~-p~tlard~~~l~~~gy~~~~~~~~DmFP~T~Hv 430 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCN-PATLARDLEFLCKEGYGITWVQPVDMFPHTAHV 430 (431)
T ss_pred hcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCC-HHHHHHHHHHHHHCCeeEEEEEEeccCCCCCCC
Confidence 014699999999843 45555544 4889887765444 3445555555554 4 4556666666665554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=112.30 Aligned_cols=119 Identities=20% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+..+++. ++++++.+|+.+. .+.. ..+.||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCC
Confidence 46889999999999998776643 4679999999999999999999999985 3599999998741 1110 015799
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
+||+|+|.. ..++..+.++|+|||.+++++-+ .-....+.+.+.+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 999999842 13445678999999999875422 1223444444443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=101.19 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=81.7
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..++..++.++||+|||.|..+++||++ +..|+++|.|+..++.+++.+...+++ ++....|+....++
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~--- 92 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP--- 92 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T---
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc---
Confidence 3666677777889999999999999999998 689999999999999999888887776 89999999765554
Q ss_pred CCCccEEEec-------CCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d-------~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++. .+....+++.+...++|||++++.
T Consensus 93 -~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 93 -EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 579998742 223345789999999999998763
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-12 Score=98.57 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=61.5
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL----- 187 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~----- 187 (311)
||+|||+|.++..+++.. +..+++++|+|+.+++.|++++...+..+ ......+..+. +.....++||+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDL-FDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCCh-hhcccccccceehhhhhHh
Confidence 799999999999999996 68999999999999999998888776544 44444444321 11111158999985
Q ss_pred cCCChhhHHHHHHhcccCCcEE
Q 021550 188 DLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 188 d~~~~~~~l~~~~~~LkpgG~l 209 (311)
+.++...+++++.+.|+|||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 4567788999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-12 Score=95.53 Aligned_cols=91 Identities=25% Similarity=0.400 Sum_probs=70.5
Q ss_pred EEEEcccccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-
Q 021550 112 VLESGTGSGSLTTSLARAV--APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD- 188 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d- 188 (311)
|||+|||+|..+..+++.+ ++..+++++|+++++++.++++....+. .+++.+.|+.+..... +.||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~---~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD---GKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS---SSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC---CCeeEEEEcC
Confidence 7999999999999999986 3347999999999999999999887665 3899999997643333 689999972
Q ss_pred C-----C--ChhhHHHHHHhcccCCc
Q 021550 189 L-----P--QPWLAIPSAKKMLKQDG 207 (311)
Q Consensus 189 ~-----~--~~~~~l~~~~~~LkpgG 207 (311)
. . ....+++++.+.|+|||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 2 1 12368899999999998
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=100.96 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.+++.++.+ ...+|+++|.++++++.+++|++.+++.+ +.++.+|+.. .++. ....||+||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~-~l~~-~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALS-FLAQ-PGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHH-HHhh-cCCCceEEE
Confidence 46789999999999999876555 25799999999999999999999988765 9999999864 2221 114699999
Q ss_pred ecCCChhhHH----HHHHh--cccCCcEEEEecC
Q 021550 187 LDLPQPWLAI----PSAKK--MLKQDGILCSFSP 214 (311)
Q Consensus 187 ~d~~~~~~~l----~~~~~--~LkpgG~lv~~~~ 214 (311)
+|+|-...+. +.+.. +|+|++.+++-.+
T Consensus 127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9999433333 33333 3577887776433
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=104.45 Aligned_cols=102 Identities=23% Similarity=0.246 Sum_probs=83.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. .++.+..+|+....+++ ++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~---~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLED---SSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCC---CceeEEE
Confidence 345799999999999999999885 67889999999999999887653 24788999988655555 7899998
Q ss_pred ecC-----CChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 187 ~d~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
++. +++..++.++.+.|+|||.+++..+...
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 643 4677899999999999999998665443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=108.69 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=101.0
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..++...++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++++..+++.+ +++..+|+.+..... .
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~--~ 238 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQ--G 238 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhc--C
Confidence 344554446789999999999999999985 4799999999999999999999999854 999999997422111 1
Q ss_pred CCccEEEecCCChh--hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEee
Q 021550 180 GLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 180 ~~~D~V~~d~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~ 247 (311)
+.||+|++|+|..- ..+..++..++|++.+++.+........ ...+.. ....+..++.+...+|++.
T Consensus 239 ~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd-~~~l~~y~~~~~~~~DmFP~T~HvE~ 308 (315)
T PRK03522 239 EVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKD-LAHLPGYRIERVQLFDMFPHTAHYEV 308 (315)
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhH-HhhccCcEEEEEEEeccCCCCCeEEE
Confidence 46999999988431 2333444446777777655544443333 344432 3577778888888888874
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=101.66 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=94.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...+..-.|.+|||||||+|+.+..++.+ ++..|+|+|.++......+..-...|....+......+++ ++. .
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp~--~ 180 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LPN--L 180 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--ccc--c
Confidence 444554457899999999999999999888 5678999999988766544333333433323333233332 333 1
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe------------cC-----------CHHHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF------------SP-----------CIEQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~------------~~-----------~~~~~~~~~~~l~~-~f 230 (311)
+.||+||+ +..+|...|.++...|++||.+++- .| +...+..+..+|++ +|
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF 260 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF 260 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence 78999985 6779999999999999999999861 11 11246667778877 89
Q ss_pred ceeeEEEee
Q 021550 231 TDIRTFEIL 239 (311)
Q Consensus 231 ~~~~~~e~~ 239 (311)
.++++++..
T Consensus 261 ~~v~~v~~~ 269 (315)
T PF08003_consen 261 KDVRCVDVS 269 (315)
T ss_pred ceEEEecCc
Confidence 999887653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=96.34 Aligned_cols=119 Identities=27% Similarity=0.320 Sum_probs=91.7
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE---
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF--- 186 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~--- 186 (311)
++|||+|||+|.+...|++.- =.+.++++|+++.+++.|+..+++.+.++.|+|.+.|+....+.. ++||+|.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEeecC
Confidence 499999999999999998872 346699999999999999999999999988999999998644444 6777764
Q ss_pred ------ecCCC----hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee
Q 021550 187 ------LDLPQ----PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 187 ------~d~~~----~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~ 233 (311)
+++.. +..++..+.+.|+|||++++.+ |.-...++++.+.. +|.-.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFEYL 201 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeEEE
Confidence 22221 1346788899999999999755 44446777777766 45433
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-11 Score=111.12 Aligned_cols=102 Identities=24% Similarity=0.316 Sum_probs=83.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. +.+|+++|+|+++++.|+++.. +. .+++...|... + +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~--l-~-- 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD--L-N-- 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh--c-C--
Confidence 46778889999999999999999999999875 4799999999999999999874 33 27788888753 2 2
Q ss_pred CCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||.|++. .+ ....+++.+.++|+|||.+++.
T Consensus 227 -~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 227 -GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred -CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 689998742 22 2357899999999999999874
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=101.12 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=95.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~ 186 (311)
...+||||||.|.++..+|+. .|...++|+|+....+..|.+.+.+.++.| +.++..|+.. ..+.. .++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~--~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIP--DGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCC--CCCeeEEE
Confidence 358999999999999999998 588999999999999999999999999875 9999999875 22222 15999999
Q ss_pred ecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 187 LDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 187 ~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
++.|||| .+++.+.+.|+|||.|.+-+...+....
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9999998 5899999999999999988887777666
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=96.32 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+++.++++|||+|||+|.++..++++ ..+++++|+++.+++.+++++.. . .+++++.+|+.+..++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~- 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPK- 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccc-
Confidence 34778888899999999999999999999987 47999999999999999998754 2 34999999998655554
Q ss_pred CCCCccEEEecCCCh--hhHHHHHHhc--ccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQP--WLAIPSAKKM--LKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~--~~~l~~~~~~--LkpgG~lv~ 211 (311)
..+|.|+.|+|-. ...+..+... +.++|.+++
T Consensus 76 --~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 76 --LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred --cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 4699999998854 3455555543 336777765
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-11 Score=97.85 Aligned_cols=126 Identities=24% Similarity=0.211 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.-..-.++||+|||.|.++..|+.+ ..+++++|+++..++.|++++.. .++ |++.+.|+. ..++. +.|
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp-~~~P~---~~F 107 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAG--LPH-VEWIQADVP-EFWPE---GRF 107 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TT-T---S---S-E
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCC-CCCCC---CCe
Confidence 355566679999999999999999988 37899999999999999998764 444 999999997 45666 899
Q ss_pred cEEEec-----CC---ChhhHHHHHHhcccCCcEEEEecCCHH---------HHHHHHHHHhhcCceeeEEEe
Q 021550 183 DSIFLD-----LP---QPWLAIPSAKKMLKQDGILCSFSPCIE---------QVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d-----~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~---------~~~~~~~~l~~~f~~~~~~e~ 238 (311)
|+|++. +. +...++..+...|+|||.+++-+...+ -.+-+.+.+.+.+..++.++.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 999853 21 234578999999999999998544332 133344455556776665554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=100.09 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=73.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..+++.. ..+|+++|+|++|++.|++. ..+.++|+...++++ ++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 47999999999999998863 124678887777776 89999985
Q ss_pred -----cCCChhhHHHHHHhcccCCcEEE
Q 021550 188 -----DLPQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 188 -----d~~~~~~~l~~~~~~LkpgG~lv 210 (311)
+.+++..++.++.++|||...++
T Consensus 117 ~~~l~~~~d~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 117 SFALHASDNIEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred cChhhccCCHHHHHHHHHHHhcCceEEE
Confidence 45688889999999999954333
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=100.93 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=104.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCC--CCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQG--QGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~--~~~~~ 176 (311)
-+....++.|.+|||.++|-|+.++..+++ ++.+|+++|.++..++.|.-|--..++. ..++++.+|+.+ ..+++
T Consensus 126 Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D 203 (287)
T COG2521 126 KVELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD 203 (287)
T ss_pred hhheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc
Confidence 345556778999999999999999998888 4559999999999999988764333332 247899999875 45665
Q ss_pred cCCCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCH-------HHHHHHHHHHhh-cCceeeEEEe
Q 021550 177 EFSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
++||+|++|+|-. .++..+++++|+|||.++-|+... +....+.+.|++ +|..++..+.
T Consensus 204 ---~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 204 ---ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred ---cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 8899999999843 467899999999999999886654 346677888888 8986665443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-11 Score=96.58 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=95.9
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCC-CCCcCCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT-VGVRDIQGQG-FPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~-~~~~D~~~~~-~~~~~~~ 180 (311)
++.......|||+|||+|..-.+.-.. |..+|+.+|.++.|-+.|.+.++++...+ +. |+.++.++.+ +++ +
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d---~ 144 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLAD---G 144 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccccc---C
Confidence 334333446899999999876544322 67899999999999999999998876555 55 8899887633 455 8
Q ss_pred CccEEE-----ecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 181 LADSIF-----LDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 181 ~~D~V~-----~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
++|.|+ ++..++.+.|++..++|+|||++++......+..-+...+++.+.....++.+-..|...
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh
Confidence 999986 466789999999999999999999875544443333334433333222233444444433
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=106.72 Aligned_cols=139 Identities=11% Similarity=0.123 Sum_probs=101.6
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+++..++.+|||++||+|.+++.++.. ..+|+++|+++.+++.|++|++.+++.+ +++..+|+.+. ... ...
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~-~~~-~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKF-ATA-QMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHH-HHh-cCC
Confidence 34444446789999999999999999865 4789999999999999999999998865 99999998642 111 114
Q ss_pred CccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEee
Q 021550 181 LADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 181 ~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~ 247 (311)
.||+||+|+|-. ..+++.+. .++|++.+++.+.... +.+=...|.. ....+..++.+....|++.
T Consensus 300 ~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T-laRDl~~L~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 300 APELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQT-MAKDIAELSGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred CCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH-HHHHHHHhcCceEEEEEEeccCCCCCcEEE
Confidence 599999999843 23444454 4789888876655444 4444445532 3677788888888888764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=102.89 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--H---hcCC-CCcEEEEEecCCCCCCCCcCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--E---RTGV-SSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~g~-~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
...+||++|||.|..+..+++. .+..+|+++|+++++++.|++.. . .... +++++++.+|+.. .+.. ..+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~-fL~~-~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE-FLSS-PSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-HHHh-cCCC
Confidence 3469999999999988888876 34579999999999999999631 1 1111 4569999999874 2221 1267
Q ss_pred ccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHH----HHHHHHHhhcCceeeEEEee
Q 021550 182 ADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQV----QRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 182 ~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~l~~~f~~~~~~e~~ 239 (311)
||+||+|.+++ .++++.+.+.|+|||.+++...+.... ..+...+++-|.....+...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 99999998776 347899999999999998865443322 33445555545455444444
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=104.82 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=114.2
Q ss_pred CCCCCCEEEE-EEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCcee-
Q 021550 15 CIKEGDLVIV-YERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQI- 91 (311)
Q Consensus 15 ~i~~GD~V~l-~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~- 91 (311)
.+|+||+|.+ +. ...||+|..|+.|.-.+|+- ++.+|.. .+|+|. |+..|.. +...+|.....
T Consensus 78 ~~k~GDrVgV~~~--------~~~Cg~C~~C~~G~E~~C~~-~~~~gy~---~~GGyaeyv~v~~~--~~~~iP~~~d~~ 143 (339)
T COG1064 78 GLKVGDRVGVGWL--------VISCGECEYCRSGNENLCPN-QKITGYT---TDGGYAEYVVVPAR--YVVKIPEGLDLA 143 (339)
T ss_pred cCCCCCEEEecCc--------cCCCCCCccccCcccccCCC-cccccee---ecCcceeEEEEchH--HeEECCCCCChh
Confidence 5899999999 66 44599999999998666653 3334443 345554 5555532 22333333211
Q ss_pred -eecccHH-----HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 92 -LYIADIS-----FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 92 -~~~~~~~-----~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
..|-..+ ..+...+++||++|+.+|+|. |.++.++|+.++ ++|+++|.+++..+.|++. |.+..+..
T Consensus 144 ~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd~~i~~ 217 (339)
T COG1064 144 EAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GADHVINS 217 (339)
T ss_pred hhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCcEEEEc
Confidence 0111111 134668899999999999995 779999999874 9999999999999998864 54432222
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...|.. .... +.+|+|+...+ ...++...+.|++||.+++..
T Consensus 218 ~~~~~~-~~~~----~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 218 SDSDAL-EAVK----EIADAIIDTVG--PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred CCchhh-HHhH----hhCcEEEECCC--hhhHHHHHHHHhcCCEEEEEC
Confidence 211111 1222 34999887666 558899999999999999864
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-11 Score=108.86 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=116.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEc--cCCcEE-EEecCCHHHHhhhhcC---
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFS--NKGGFV-YLLAPTPELWTLVLSH--- 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~--~~~~~~-~~~~p~~~~~~~~~~~--- 87 (311)
+.+++||+|++.. .+.||.|..|+.|..+++. -...+|..... ..|++. |+..|... .....+.
T Consensus 74 ~~~~~GdrVvv~~--------~~~Cg~C~~C~~G~~~~C~-~~~~~g~~~~~~~~~G~~aEyv~vp~~~-~~~~~pd~~~ 143 (350)
T COG1063 74 RGFKVGDRVVVEP--------NIPCGHCRYCRAGEYNLCE-NPGFYGYAGLGGGIDGGFAEYVRVPADF-NLAKLPDGID 143 (350)
T ss_pred cCCCCCCEEEECC--------CcCCCCChhHhCcCcccCC-CccccccccccCCCCCceEEEEEecccc-CeecCCCCCC
Confidence 4589999999987 5669999999999988887 22223333221 134433 66666411 1111111
Q ss_pred --CceeeecccHH--HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 88 --RTQILYIADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 88 --~~~~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
......|...+ .........++.+|+.+|||+ |.++..+++.. +..+|+++|.++++++.|++.. +.+- +
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~-~ 218 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADV-V 218 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeE-e
Confidence 12233344444 223444456666999999999 88888888886 5789999999999999998742 2111 1
Q ss_pred EEEEe-cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 163 TVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 163 ~~~~~-D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..... +.....+.......+|++|-... ...++..+.++++|||.+++++...
T Consensus 219 ~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 219 VNPSEDDAGAEILELTGGRGADVVIEAVG-SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ecCccccHHHHHHHHhCCCCCCEEEECCC-CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 11111 11100111111136999886666 4458999999999999999876553
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-11 Score=96.65 Aligned_cols=100 Identities=32% Similarity=0.399 Sum_probs=75.7
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+..+.. ..++.+|||+|||.|.++..+++. ..+++++|+++.+++. .. +.....+......+.
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~-- 76 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD-- 76 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS--
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc--
Confidence 344443 578899999999999999988665 3599999999999887 11 333333332222344
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.||+|++ +.+++..+|+.+.+.|+|||.+++..+..
T Consensus 77 -~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 -GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 78999985 56788899999999999999999987764
|
... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=96.54 Aligned_cols=142 Identities=23% Similarity=0.292 Sum_probs=100.7
Q ss_pred CCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEE
Q 021550 57 KPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHV 136 (311)
Q Consensus 57 ~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v 136 (311)
++||....... .-+++.+|..+.|....-+ .+.......+..+||+|||+|..++.++..+ |.++|
T Consensus 110 ~~F~~l~l~~~-pgVlIPRpETEE~V~~Vid------------~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v 175 (328)
T KOG2904|consen 110 QPFGDLDLVCK-PGVLIPRPETEEWVEAVID------------ALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTV 175 (328)
T ss_pred CccCCceEEec-CCeeecCccHHHHHHHHHH------------HHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceE
Confidence 35665433322 3356777777776543211 1122223345689999999999999999998 48999
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--cCCCCccEEEecCCC-----------------h-----
Q 021550 137 YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLADSIFLDLPQ-----------------P----- 192 (311)
Q Consensus 137 ~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~~~~~D~V~~d~~~-----------------~----- 192 (311)
+++|.|+.++..|.+|+.+.++.+.+.+++.+.+...+.+ ...+.+|++++|+|- |
T Consensus 176 ~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALd 255 (328)
T KOG2904|consen 176 TAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALD 255 (328)
T ss_pred EEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhc
Confidence 9999999999999999999999998999876665422211 123789999998871 1
Q ss_pred ---------hhHHHHHHhcccCCcEEEEe
Q 021550 193 ---------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 193 ---------~~~l~~~~~~LkpgG~lv~~ 212 (311)
..++.-+.+.|+|||.+.+-
T Consensus 256 Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 256 GGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 13466778899999998764
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-11 Score=117.12 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.+|.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..+++. ++++++.+|+.+ .+.. ..+.||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~-~l~~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA-WLKE-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH-HHHH-cCCCcCEE
Confidence 35789999999999999999875 4568999999999999999999999986 569999999864 1111 12689999
Q ss_pred EecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 186 FLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+|+|.. ..++..+.+.|+|||.+++. .+..++....+.+.+
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~-~~~~~~~~~~~~~~~ 670 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS-NNKRGFKMDEEGLAK 670 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE-eCCccCChhHHHHHh
Confidence 9999831 24677889999999998754 344444444444443
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=99.51 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.+||++|||+|.++..+++.. +..+++++|+++++++.|++++...+. ..++++..+|... .+.. ..+.||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-~l~~-~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-FLAD-TENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-HHHh-CCCCccE
Confidence 34599999999999998888763 457899999999999999998755321 2358888888753 1111 1168999
Q ss_pred EEecCCCh---------hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhhcCceeeEEEee
Q 021550 185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 185 V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
|++|.+++ .++++.+.+.|+|||.+++.+.+. ..+..+.+.+++-|.....+...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~ 216 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTAN 216 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99987633 357889999999999999864432 33444445555568777766554
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-10 Score=90.15 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=99.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
....++|||||||..+.++++..+|...+.+.|+++.+++...+.+..++.. ++.+..|+. ..+.. +++|++++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~-~~l~~---~~VDvLvf 116 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLL-SGLRN---ESVDVLVF 116 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHH-hhhcc---CCccEEEE
Confidence 3678999999999999999999998899999999999999999888877754 888999987 56666 89999999
Q ss_pred cCCCh---------------h-----------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee
Q 021550 188 DLPQP---------------W-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 188 d~~~~---------------~-----------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~ 233 (311)
++|-- | .++..+-.+|.|.|.+++..-..+..++++..++. +|...
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 87610 1 35666778889999999887777888888888877 56543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=103.65 Aligned_cols=113 Identities=29% Similarity=0.420 Sum_probs=95.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~ 176 (311)
.....+++.+|..|||+++++|+-+.+++..+.+.+.+++.|+++..+...+.++.+.|..+ +.+...|.... ....
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccc
Confidence 45677899999999999999999999999999878999999999999999999999999987 77777787642 1121
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcc----cCCcEEEEecCCH
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKML----KQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~L----kpgG~lv~~~~~~ 216 (311)
..||.|++|.|+. .++|..+.+.+ +|||+++ |+.|.
T Consensus 155 ---~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv-YsTCS 221 (283)
T PF01189_consen 155 ---SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV-YSTCS 221 (283)
T ss_dssp ---TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE-EEESH
T ss_pred ---cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE-EEecc
Confidence 4699999998843 25789999999 9999998 88876
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.5e-10 Score=99.16 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=91.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.+||++|||.|.++..++++ .+..+|+.+|+++.+++.|++.+...+ + +++++++.+|+.. .+.....+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~-~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE-FLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH-HHhhccCCCCC
Confidence 45689999999999999999877 234789999999999999999886532 2 3479999999863 11111116799
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcC
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNF 230 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f 230 (311)
+|++|.+++ .++++.+.+.|+|||.+++-+.+ .+....+.+.+++-|
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 999988764 35789999999999999874332 344556666666666
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=95.72 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=83.9
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG--------HVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
..+.|..++.++.+++.++++.|||.-||+|.+.+..+....... +++++|+++++++.|++|+...++...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 345677777899999999999999999999999988877653222 389999999999999999999999888
Q ss_pred EEEEEecCCCCCCCCcCCCCccEEEecCCCh-------------hhHHHHHHhcccC
Q 021550 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQ 205 (311)
Q Consensus 162 v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~-------------~~~l~~~~~~Lkp 205 (311)
+.+.+.|+....+.. +.+|.|+.|+|-- ..+++.+.+.|++
T Consensus 90 i~~~~~D~~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999999998755444 7899999999821 1457788888888
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9e-11 Score=103.69 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcccccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHh----cC----------------
Q 021550 106 LVPGCLVLESGTGSGS----LTTSLARAVAP----TGHVYTFDFHEQRAASAREDFER----TG---------------- 157 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~----~~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~~----~g---------------- 157 (311)
..++.+|+|+|||+|. +++.+++.... ..+|+++|+|+.+++.|++.+-. .+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 45556665432 47899999999999999975310 01
Q ss_pred ------CCCcEEEEEecCCCCCCCCcCCCCccEEEec-----C--CChhhHHHHHHhcccCCcEEEE
Q 021550 158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 ------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+.+.|.+.|+.+..++. +.||+|++. . +....++.++.+.|+|||++++
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 1235889999998655444 789999862 2 3445799999999999999996
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-10 Score=114.05 Aligned_cols=126 Identities=19% Similarity=0.196 Sum_probs=94.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---------------CcEEEEEecCCCCC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---------------SFVTVGVRDIQGQG 173 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---------------~~v~~~~~D~~~~~ 173 (311)
+.+|||+|||+|.+++.+++.. +..+|+++|+|+++++.|++|+..++++ ++++++++|+.. .
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-Y 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-h
Confidence 5689999999999999999985 5679999999999999999999876432 359999999874 3
Q ss_pred CCCcCCCCccEEEecCC-----------------Ch--------------------------hhHHHHHHhcccCCcEEE
Q 021550 174 FPDEFSGLADSIFLDLP-----------------QP--------------------------WLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~-----------------~~--------------------------~~~l~~~~~~LkpgG~lv 210 (311)
+... ...||+|+.|+| +| ..++..+.+.|+|||.++
T Consensus 197 ~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 CRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred cccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 3321 136999998877 11 134667778999999988
Q ss_pred EecCCHHHHHHHH-HHHhh-cCceeeEEEe
Q 021550 211 SFSPCIEQVQRSC-ESLRL-NFTDIRTFEI 238 (311)
Q Consensus 211 ~~~~~~~~~~~~~-~~l~~-~f~~~~~~e~ 238 (311)
+ .....|-+.+. +.+.+ +|...+.|..
T Consensus 276 l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 276 F-NMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred E-EECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 5 33455666666 46655 6777665544
|
|
| >PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-11 Score=76.27 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=37.9
Q ss_pred cCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceE
Q 021550 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV 63 (311)
Q Consensus 12 ~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~ 63 (311)
++++|++||+|.|.+++|+++.+.|.+|..++|++|.+.|+|+||++.|+.+
T Consensus 2 R~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 2 RRGPFRAGDRVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp ---S--TT-EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred CcCCCCCCCEEEEccCCCCeeeEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 5789999999999999999999999999999999999999999999999876
|
|
| >PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=99.35 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=107.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeec-ccceeeCcccccCCCCceEEccC-------------------------
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQN-RFGAFKHSDWIGKPFGSMVFSNK------------------------- 67 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~-~~G~~~~~~~iG~~~G~~~~~~~------------------------- 67 (311)
+.|++||+|+|..+.+..+++++.++..+.. ++|.|+.+++||++||.+++...
T Consensus 2 ~~I~~gd~Vil~~~~~~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~~~ 81 (299)
T PF04189_consen 2 SIIQEGDYVILRLPSGNMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEEEG 81 (299)
T ss_pred CCcCCCCEEEEEcCCCcEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccccc
Confidence 5799999999999999999999999998887 67889999999999997764321
Q ss_pred ---------------------------------------------------------------------------CcEEE
Q 021550 68 ---------------------------------------------------------------------------GGFVY 72 (311)
Q Consensus 68 ---------------------------------------------------------------------------~~~~~ 72 (311)
...+.
T Consensus 82 ~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~ft 161 (299)
T PF04189_consen 82 DDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKRFT 161 (299)
T ss_pred ccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhceEE
Confidence 56778
Q ss_pred EecCCHHH----HhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEE
Q 021550 73 LLAPTPEL----WTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTF 139 (311)
Q Consensus 73 ~~~p~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~v 139 (311)
+++|+... |....+.+..-+..+.+++|+.++++++|.+||.+-...|.++.++++++++.+.++.+
T Consensus 162 v~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~ 232 (299)
T PF04189_consen 162 VLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITL 232 (299)
T ss_pred EeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEE
Confidence 99999853 33334556677889999999999999999999999999999999999999988888775
|
This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=108.01 Aligned_cols=111 Identities=25% Similarity=0.238 Sum_probs=86.0
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG- 171 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~- 171 (311)
.......++..+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++.. +...++.+...|+..
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSP 95 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEeccccc
Confidence 3334455777887778889999999999999999987 369999999999998876532 222348999999863
Q ss_pred -CCCCCcCCCCccEEEecCC-----C--hhhHHHHHHhcccCCcEEEEe
Q 021550 172 -QGFPDEFSGLADSIFLDLP-----Q--PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 -~~~~~~~~~~~D~V~~d~~-----~--~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+++. ++||+|+++.+ + ...++.++.+.|+|||.+++.
T Consensus 96 ~~~~~~---~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 96 DLNISD---GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccCCCC---CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33444 78999986542 2 357899999999999999874
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-10 Score=97.02 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=88.1
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+.++...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+. .+++...|+....
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 333455666666778899999999999999888875 46899999999999999998876665 3777777775421
Q ss_pred -CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 -FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 -~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.||+|++ +.+++..++..+.+.|+|||.+++..+
T Consensus 109 ~~~~---~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 109 AEHP---GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhcC---CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 122 68999975 356777899999999999999987543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=96.17 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=76.7
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+.+.|..++..+.. ....+.+|||+|||+|.+++.+++.+. +...|+++|+++.+++.|+++.. + +.+...
T Consensus 32 qFfTP~~iAr~~~i-~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~~ 104 (241)
T PHA03412 32 AFFTPIGLARDFTI-DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWINA 104 (241)
T ss_pred ccCCCHHHHHHHHH-hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEEc
Confidence 44455555432211 122467999999999999999988652 35699999999999999998742 2 778889
Q ss_pred cCCCCCCCCcCCCCccEEEecCCC-----------------hhhHHHHHHhcccCCcE
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQ-----------------PWLAIPSAKKMLKQDGI 208 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~-----------------~~~~l~~~~~~LkpgG~ 208 (311)
|+....+ . ++||+||.|+|- ...++..+.+++++|+.
T Consensus 105 D~~~~~~-~---~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 105 DALTTEF-D---TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred chhcccc-c---CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9874333 2 689999999881 12467778886666664
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=93.39 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=96.6
Q ss_pred ceeeecccHHHHHHhcC--CCCCCEEEEEcccccHHHHHHHHHhCCCcEE-EEEeCCHHHHHHHHHHHHhcCC-------
Q 021550 89 TQILYIADISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHV-YTFDFHEQRAASAREDFERTGV------- 158 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~--~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~g~------- 158 (311)
..+-.|...+.+++.+. ++||.+.||+|+|+|+++..++..+++.+.+ +++|.-++.++.+++|+...-.
T Consensus 61 ~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~ 140 (237)
T KOG1661|consen 61 LTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSK 140 (237)
T ss_pred eEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhh
Confidence 44555677777888888 8999999999999999999999888766654 9999999999999999876531
Q ss_pred --CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 159 --SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 159 --~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+.++.+|.. ..+++. ..||.|++....+ +..+.+.+.|++||.+++-
T Consensus 141 ~~~~~l~ivvGDgr-~g~~e~--a~YDaIhvGAaa~-~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 141 LKRGELSIVVGDGR-KGYAEQ--APYDAIHVGAAAS-ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred hccCceEEEeCCcc-ccCCcc--CCcceEEEccCcc-ccHHHHHHhhccCCeEEEe
Confidence 234778899998 566653 6899998875443 4678899999999999864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-10 Score=96.07 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCcEEEEEecCCCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----------GVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~v~~~~~D~~~~~ 173 (311)
.+.++.+|||+|||.|..+..||++ +..|+++|+|+.+++.+.+..... .....+++.++|+.+..
T Consensus 31 ~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 31 GLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 3357789999999999999999987 589999999999999864321100 00124888999997533
Q ss_pred CCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 174 FPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 174 ~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
... .+.||.|+ ++.+ ....+++.+.++|+|||.+++.
T Consensus 108 ~~~--~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 108 AAD--LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccc--CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 211 14678775 2232 2245899999999999975443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=101.32 Aligned_cols=132 Identities=28% Similarity=0.457 Sum_probs=104.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-c
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~ 177 (311)
..+..++++||.+|||+++.+|+-|.++|..+...+.|++.|.+...+...+.|+.+.|+.+ ..+...|... +++ .
T Consensus 232 Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~e--f~~~~ 308 (460)
T KOG1122|consen 232 LPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGRE--FPEKE 308 (460)
T ss_pred ceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccc--ccccc
Confidence 45677889999999999999999999999999999999999999999999999999999987 6667777753 321 1
Q ss_pred CCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---HHHHHHHHHHh
Q 021550 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---EQVQRSCESLR 227 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~ 227 (311)
..++||.|++|.|+. .+.|..+.+.+++||+|| |+.|. +..+..+.+.-
T Consensus 309 ~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV-YSTCSI~~~ENE~vV~yaL 387 (460)
T KOG1122|consen 309 FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV-YSTCSITVEENEAVVDYAL 387 (460)
T ss_pred cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE-EEeeecchhhhHHHHHHHH
Confidence 224899999998843 257888999999999998 87765 34444555544
Q ss_pred hcCceee
Q 021550 228 LNFTDIR 234 (311)
Q Consensus 228 ~~f~~~~ 234 (311)
..+.+.+
T Consensus 388 ~K~p~~k 394 (460)
T KOG1122|consen 388 KKRPEVK 394 (460)
T ss_pred HhCCceE
Confidence 4444444
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-09 Score=87.16 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=81.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.-.|.+|+|+|||+|.+++..+-. +..+|+++|+++++++.+++|..+. . ..+++...|+.+ +. +.+|.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~-g~v~f~~~dv~~--~~----~~~dt 111 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-L-GDVEFVVADVSD--FR----GKFDT 111 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-C-CceEEEEcchhh--cC----Cccce
Confidence 3456789999999999999887765 5689999999999999999999883 3 349999999974 33 67899
Q ss_pred EEecCC-------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++.|+| ..+.++..+++.-+ ++|+-.......+.+...+
T Consensus 112 vimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYsiH~a~~~~f~~~~~~ 157 (198)
T COG2263 112 VIMNPPFGSQRRHADRPFLLKALEISD-----VVYSIHKAGSRDFVEKFAA 157 (198)
T ss_pred EEECCCCccccccCCHHHHHHHHHhhh-----eEEEeeccccHHHHHHHHH
Confidence 999998 34567777776552 3354444334444444433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-10 Score=102.44 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-- 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-- 177 (311)
+++.++..+ .+|||++||+|.+++.+++.. .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++..
T Consensus 190 v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~-~~~~~~ 263 (353)
T TIGR02143 190 ACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEF-TQAMNG 263 (353)
T ss_pred HHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHH-HHHHhh
Confidence 444444333 479999999999999998873 599999999999999999999999876 99999998641 1100
Q ss_pred ---C---------CCCccEEEecCCChhhHHHHH-HhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeecee
Q 021550 178 ---F---------SGLADSIFLDLPQPWLAIPSA-KKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRT 242 (311)
Q Consensus 178 ---~---------~~~~D~V~~d~~~~~~~l~~~-~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~ 242 (311)
. ...||+||+|+|. ..+...+ ..+++|++.+++.+.......++. .|.+ ....+..++.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~-~L~~~Y~l~~v~~~DmFP~T 341 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQAYERILYISCNPETLKANLE-QLSETHRVERFALFDQFPYT 341 (353)
T ss_pred ccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHH-HHhcCcEEEEEEEcccCCCC
Confidence 0 0238999999993 2222222 222347777776655544444444 4434 36777788888888
Q ss_pred eEEee
Q 021550 243 YEIRQ 247 (311)
Q Consensus 243 ~~v~~ 247 (311)
+|++.
T Consensus 342 ~HvE~ 346 (353)
T TIGR02143 342 HHMEC 346 (353)
T ss_pred CcEEE
Confidence 88874
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=108.26 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--Hhc---CC-CCcEEEEEecCCCCCCCCcCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--ERT---GV-SSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~---g~-~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
.++++|||+|||+|..+..++++ .+..+|+++|+++++++.++++. ... .. +++++++.+|+.+ .+.. ..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~-~l~~-~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN-WLRK-LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH-HHHh-CCC
Confidence 45689999999999999998875 22379999999999999999842 221 12 2469999999874 1211 126
Q ss_pred CccEEEecCCChh----------hHHHHHHhcccCCcEEEEecC----CHHHHHHHHHHHhh-cCceeeEEEeeceee
Q 021550 181 LADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL-NFTDIRTFEILLRTY 243 (311)
Q Consensus 181 ~~D~V~~d~~~~~----------~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~ 243 (311)
+||+|++|.++++ ++++.+.+.|+|||.+++... ..+.+..+.+.+++ +| ...........|
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~ 449 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF 449 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc
Confidence 8999999987653 478899999999999997432 23445666677766 57 444444443333
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-10 Score=95.23 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=80.4
Q ss_pred HHHhcC--CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~--~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++..+. ..++.+|||+|||+|.++..++.. ..+|+++|+++++++.|++++...+..+++.+..+|+... +
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~-- 117 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--C-- 117 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--C--
Confidence 444444 567899999999999999999875 4699999999999999999988777655599999998642 2
Q ss_pred CCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++ ..+ ....++.++.+.+++++.+. +.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~~ 159 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAPK 159 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECCC
Confidence 57999874 222 23457888888887665554 4443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-10 Score=93.36 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=99.1
Q ss_pred eeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 90 QILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 90 ~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
.+.-+.+.. ++..++.+..++++||+|.=+|+.++.+|.++.++++|+++|++++..+.+....+..|....|++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 333333433 4555667778899999999999999999999988999999999999999999999999999899999998
Q ss_pred CCC---CCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 169 IQG---QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 169 ~~~---~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+ +-+.....+.||.+|+|.. ..+...+++.++|++||.|++
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 874 1112212278999999864 445789999999999999986
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-09 Score=87.35 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.+.+|.+||-+|+.+|....+++..+++.|.|+++|+++...+..-..+++ ..| +-.+..|+....-....-+.+
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~N-IiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPN-IIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STT-EEEEES-TTSGGGGTTTS--E
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCc-eeeeeccCCChHHhhcccccc
Confidence 45689999999999999999999999999899999999999765544433332 224 888999998511111122689
Q ss_pred cEEEecCCChhh---HHHHHHhcccCCcEEEEec---------CCHHHHHHHHHHHhh-cCceee
Q 021550 183 DSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS---------PCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 183 D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~---------~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
|+||.|...|.+ ++.++..+||+||.+++.. +..+-+..-.+.|++ +|.-++
T Consensus 145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 145 DVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 999999877654 5678889999999988752 222445666677766 565444
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=97.36 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--CCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~--~~~~~D~ 184 (311)
-+|.+|||+.||||.+++..+.+ ++.+|+.+|.++..+...++|++..+..+.+.+...|+.. .+... ....||+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~-~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK-FLLKLAKKGEKFDI 117 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH-HHHHHHHCTS-EEE
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH-HHHhhcccCCCceE
Confidence 47899999999999999998887 5789999999999999999999999988779999999753 12110 1268999
Q ss_pred EEecCCChh-----hHHHHHH--hcccCCcEEEEec
Q 021550 185 IFLDLPQPW-----LAIPSAK--KMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~~~~-----~~l~~~~--~~LkpgG~lv~~~ 213 (311)
||+|+|-.. .++..+. .+|+++|.+++-.
T Consensus 118 IflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 118 IFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 999998432 3455555 6888999998644
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=92.44 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+..+ +.+...|+.+..... .++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~--~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKG--AKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCC--CCCccEEE
Confidence 34789999999999999988875 3579999999999999999887766543 788888876432221 26899997
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ +.+++..++..+.+.|+|||.+++..+
T Consensus 118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5 356778899999999999999887543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=91.39 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QG 173 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~ 173 (311)
|...|.++ +.||.+|||+|||.|.+..+|.+. .+...+|+|++++.+..+.++ | +.++++|+.. ..
T Consensus 3 D~~~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 3 DLQIIAEW--IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLAD 70 (193)
T ss_pred hHHHHHHH--cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhh
Confidence 33445554 468999999999999999998887 378999999999988777643 4 6789999975 23
Q ss_pred CCCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 174 FPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+++ ++||.||++ ...|..+|+++++ -|...++.-|+......-.+.+
T Consensus 71 f~d---~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 71 FPD---QSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred CCC---CCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHHH
Confidence 555 899999975 3467777777754 4667777777776666555555
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=93.83 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--------------CCcEEEEEecCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQ 170 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------~~~v~~~~~D~~ 170 (311)
.+.++.+|||+|||.|..+.+||++ +..|+++|+++.+++.+.. +.++ ...+++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 4467789999999999999999986 6899999999999998643 2222 234888999997
Q ss_pred CCCCCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 171 GQGFPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+..... .+.||.|+ +..+ ....++..+.++|+|||.+++
T Consensus 108 ~l~~~~--~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 108 ALTAAD--LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCccc--CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 532221 14688876 2333 234689999999999986443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=91.15 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=92.6
Q ss_pred CceeeecccHHHHHHhcCCCC--CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 88 RTQILYIADISFVIMYLELVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~--g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
+...|+.+.....++++++.. ..-|||||||+|..+..+... +..++++|+|+.|++.|.+.--+ -.++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e------gdli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE------GDLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh------cCee
Confidence 344555666666777877766 678999999999988777654 47889999999999999873211 2467
Q ss_pred EecCCC-CCCCCcCCCCccEEEecCC------------Ch----hhHHHHHHhcccCCcEEEE--ecCCHHHHHHHHHHH
Q 021550 166 VRDIQG-QGFPDEFSGLADSIFLDLP------------QP----WLAIPSAKKMLKQDGILCS--FSPCIEQVQRSCESL 226 (311)
Q Consensus 166 ~~D~~~-~~~~~~~~~~~D~V~~d~~------------~~----~~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l 226 (311)
.+|+-. .+|.+ +.||.||+-.. .| ..++..++..|++|++.|+ |--+..|...+.+.-
T Consensus 99 l~DMG~Glpfrp---GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a 175 (270)
T KOG1541|consen 99 LCDMGEGLPFRP---GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA 175 (270)
T ss_pred eeecCCCCCCCC---CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence 778764 45666 89999874111 22 1467889999999999775 444556666666554
Q ss_pred hh-cCc
Q 021550 227 RL-NFT 231 (311)
Q Consensus 227 ~~-~f~ 231 (311)
.. +|.
T Consensus 176 ~~aGF~ 181 (270)
T KOG1541|consen 176 MKAGFG 181 (270)
T ss_pred HhhccC
Confidence 44 653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=100.96 Aligned_cols=141 Identities=18% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
+...+... +.+|||++||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ +++..+|+.+. .+...
T Consensus 199 v~~~~~~~-~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~ 273 (362)
T PRK05031 199 ALDATKGS-KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGV 273 (362)
T ss_pred HHHHhhcC-CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhc
Confidence 44444432 357999999999999988887 3699999999999999999999998875 99999998641 01100
Q ss_pred -----------CCCCccEEEecCCChhhHHHHHHh-cccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceee
Q 021550 178 -----------FSGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTY 243 (311)
Q Consensus 178 -----------~~~~~D~V~~d~~~~~~~l~~~~~-~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~ 243 (311)
....||+||+|+|-. .+-..+.+ +.+|++.+++.+.. ..+.+-...|.++ ...+..++.+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~D~v~lDPPR~-G~~~~~l~~l~~~~~ivyvSC~p-~tlarDl~~L~~gY~l~~v~~~DmFPqT~ 351 (362)
T PRK05031 274 REFNRLKGIDLKSYNFSTIFVDPPRA-GLDDETLKLVQAYERILYISCNP-ETLCENLETLSQTHKVERFALFDQFPYTH 351 (362)
T ss_pred ccccccccccccCCCCCEEEECCCCC-CCcHHHHHHHHccCCEEEEEeCH-HHHHHHHHHHcCCcEEEEEEEcccCCCCC
Confidence 012589999999942 22233322 22367776665544 3344444445443 56777788888888
Q ss_pred EEee
Q 021550 244 EIRQ 247 (311)
Q Consensus 244 ~v~~ 247 (311)
|++.
T Consensus 352 HvE~ 355 (362)
T PRK05031 352 HMEC 355 (362)
T ss_pred cEEE
Confidence 8774
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=97.66 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...+||.+|+|.|..+..+++.. +..+|+.+|++++.++.|++++...+ .+++++++.+|+.. .+.. ..+.||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~-~L~~-~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA-ELEK-RDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH-HHhh-CCCCccE
Confidence 34799999999999999888763 45789999999999999999875432 24579999999875 2221 2268999
Q ss_pred EEecCCCh-----------hhHHH-HHHhcccCCcEEEEecCC------HHHHHHHHHHHhhcCceeeEEEe
Q 021550 185 IFLDLPQP-----------WLAIP-SAKKMLKQDGILCSFSPC------IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 185 V~~d~~~~-----------~~~l~-~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
||+|.++| .++++ .+.+.|+|||.+++...+ .+....+...+++-|..+..+..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~ 251 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTA 251 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99997654 24677 889999999999875432 23455666777766777666554
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=94.31 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++.+ +..+++++|+|+++++.|+++.. + +.+.++|+.. ++++ ++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~-----~-~~~~~~d~~~-~~~~---~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP-----N-INIIQGSLFD-PFKD---NFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC-----C-CcEEEeeccC-CCCC---CCEEEE
Confidence 4567899999999999999998875 56899999999999999987632 2 6778888875 5655 789999
Q ss_pred Eec-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 186 FLD-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 186 ~~d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++. .+ ....++.++.+.+ ++.+++
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 853 22 2245677777776 445555
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=104.38 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~ 184 (311)
..+..+||||||.|.++..+|... |+..++|+|++...+..|.+.....++.| +.+...|+.. ..+++ +++|.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~---~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN---NSLDG 420 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc---ccccE
Confidence 346789999999999999999984 88999999999999999988888888877 8888877642 33555 78999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+++.|+|| .++..+.+.|+|||.|.+-+...+........+.+
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 999999998 58999999999999999888888888877777765
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=98.14 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCC-CCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFS-GLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~-~~~D~ 184 (311)
.++.+|||+|||+|..+..+++.+....+++++|+|++|++.|++++........+.++++|+.+ ..++.... ....+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 46789999999999999999998633578999999999999999987653322237778999874 22332100 11223
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++++. + +...+|+++.+.|+|||.+++-
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33221 1 2346799999999999999863
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=100.79 Aligned_cols=104 Identities=23% Similarity=0.173 Sum_probs=85.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCC--CcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFP--DEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~--~~~~~~~D 183 (311)
..|++||++.|=||.++.++|.. ++.+|+++|.|...++.|++|++.+|++ ..+.++++|+.+ -+. ...+..||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~-~l~~~~~~g~~fD 292 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK-WLRKAERRGEKFD 292 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH-HHHHHHhcCCccc
Confidence 34999999999999999988865 5669999999999999999999999985 458899999875 111 11114899
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+||+|+|.. ...+..+.++|+|||.+++.+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999999932 356788999999999999754
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=87.62 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC-CCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF-SGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~-~~~~D~V 185 (311)
-.|.++||+.+|||.+++..+.+ ++.+++.+|.+...+...++|++..+......+...|+.. .++... .+.||+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~-~L~~~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR-ALKQLGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH-HHHhcCCCCcccEE
Confidence 57899999999999999999988 5789999999999999999999999977779999999873 222111 1349999
Q ss_pred EecCCChhhHH------HH--HHhcccCCcEEEEe
Q 021550 186 FLDLPQPWLAI------PS--AKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~~~l------~~--~~~~LkpgG~lv~~ 212 (311)
|+|+|-.+..+ .. -..+|+|+|.+++-
T Consensus 119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 99999665443 22 24669999999863
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=92.21 Aligned_cols=100 Identities=24% Similarity=0.422 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|..|+|+.||-|.+++.+|+. +....|+++|++|..++.+++|++.+++.+.+.+.++|+... .+. ..+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~-~~~---~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF-LPE---GKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T---T-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh-cCc---cccCEE
Confidence 678999999999999999999985 346889999999999999999999999999899999999752 233 789999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEE
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv 210 (311)
+++.| ....+|..+...+++||.+.
T Consensus 174 im~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99988 44579999999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=100.36 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=104.2
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
+....++++++..++++|||+-||.|.+++.+|+. ..+|+++|+++++++.|++|++.+++.| +++..+|+.+...
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~ 355 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhh
Confidence 33445778888889999999999999999999976 5899999999999999999999999998 9999999875211
Q ss_pred CCcCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c--CceeeEEEeeceeeEE
Q 021550 175 PDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTDIRTFEILLRTYEI 245 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~--f~~~~~~e~~~r~~~v 245 (311)
.......+|.|++|+|-. ..+++.+. .++|..++++.+-. ..+.+-...|.. + ...+..++.+....|+
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVSCNP-~TlaRDl~~L~~~gy~i~~v~~~DmFP~T~Hv 430 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVSCNP-ATLARDLAILASTGYEIERVQPFDMFPHTHHV 430 (432)
T ss_pred hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEeCCH-HHHHHHHHHHHhCCeEEEEEEEeccCCCcccc
Confidence 110114789999999832 34444444 46676666654433 445555555555 4 4555666655554443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=90.62 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=78.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~ 184 (311)
..+.+|||++||+|.+++.++.+ +..+|+++|.++.+++.+++|++.++..++++++.+|+... .+.. ....+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dv 124 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNV 124 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceE
Confidence 36789999999999999999988 35689999999999999999999998876689999999531 1111 0024899
Q ss_pred EEecCCChhh----HHHHH--HhcccCCcEEEEe
Q 021550 185 IFLDLPQPWL----AIPSA--KKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~~~~~----~l~~~--~~~LkpgG~lv~~ 212 (311)
|++|+|-... .+..+ ..+|+++|.+++-
T Consensus 125 v~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 125 IYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9999985432 33333 2367888888753
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=97.16 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=76.6
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..++..+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+...+++++.+|+....
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 445556888889999999999999999999999987 46899999999999999999887764455999999997533
Q ss_pred CCCcCCCCccEEEecCCCh
Q 021550 174 FPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~ 192 (311)
+ ..+|.|+.|+|-.
T Consensus 99 ~-----~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 F-----PYFDVCVANVPYQ 112 (294)
T ss_pred c-----cccCEEEecCCcc
Confidence 3 4589999998854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=93.13 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=81.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..++.+. +..+|+++|+++.+++.+++++ . .+.++.+|+... ... ..||+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~-~~~---~kFDl 129 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEF-ESN---EKFDV 129 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhh-ccc---CCCcE
Confidence 34456799999999999999888874 3479999999999999998863 2 378899999743 223 67999
Q ss_pred EEecCCCh-------------------------hhHHHHHHhcccCCcEEEE-ecCCH-----HHHHHHHHHHhh-cC
Q 021550 185 IFLDLPQP-------------------------WLAIPSAKKMLKQDGILCS-FSPCI-----EQVQRSCESLRL-NF 230 (311)
Q Consensus 185 V~~d~~~~-------------------------~~~l~~~~~~LkpgG~lv~-~~~~~-----~~~~~~~~~l~~-~f 230 (311)
|++|+|-. ..++.....+|+|+|.+.+ |+... -...+....|++ +|
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 99987711 1345666789999997654 22211 123455566666 44
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=96.52 Aligned_cols=105 Identities=24% Similarity=0.310 Sum_probs=85.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+++.-.+-.++.|||+|||+|.+++..|++ ++.+|+++|.+.-+ +.|++.+..+++.+.++++++.+.+..+|.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--- 125 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPV--- 125 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCc---
Confidence 444444678899999999999999999988 58999999997655 999999999999999999999998766674
Q ss_pred CCccEEEecCCChhhHHHHH--------HhcccCCcEEE
Q 021550 180 GLADSIFLDLPQPWLAIPSA--------KKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~--------~~~LkpgG~lv 210 (311)
+++|+|++.+-..+.+.+.+ -+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 78999998766555444333 35899999875
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=92.38 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=113.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCC-----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----- 88 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~----- 88 (311)
.+|+||||.+... +.|+.|..|+.|..+.+.-++-.--. ...|... |+..|. ++-..+|..
T Consensus 82 ~LkVGDrVaiEpg--------~~c~~cd~CK~GrYNlCp~m~f~atp---p~~G~la~y~~~~~--dfc~KLPd~vs~ee 148 (354)
T KOG0024|consen 82 HLKVGDRVAIEPG--------LPCRDCDFCKEGRYNLCPHMVFCATP---PVDGTLAEYYVHPA--DFCYKLPDNVSFEE 148 (354)
T ss_pred ccccCCeEEecCC--------CccccchhhhCcccccCCccccccCC---CcCCceEEEEEech--HheeeCCCCCchhh
Confidence 3799999999984 45777888988887776533311000 1112221 333332 222333332
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
...+.|-..+ +...+.++++|.+||.+|+|+ |.++...|+.++ ..+|+.+|+++.+++.|++ .|.+.......
T Consensus 149 GAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 149 GALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDPSSH 223 (354)
T ss_pred cccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEeeccc
Confidence 2455665544 366788999999999999999 889999999984 7999999999999999997 45543122222
Q ss_pred ec-CC---C---CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 167 RD-IQ---G---QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 167 ~D-~~---~---~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+ .. + ..+.. ..+|+.| +.......++.+...+++||.+++.
T Consensus 224 ~~~~~~~~~~v~~~~g~---~~~d~~~-dCsG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGK---KQPDVTF-DCSGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred cccHHHHHHHHHhhccc---cCCCeEE-EccCchHHHHHHHHHhccCCEEEEe
Confidence 11 00 0 11111 3488866 3344445788899999999997764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-09 Score=90.33 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=70.8
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
+...++.+|||+|||+|.++..+++.. ++..+|+++|+++++++.|+++....+ +.+...+......++ +
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~---~ 128 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG---E 128 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC---C
Confidence 344567899999999999998888653 345699999999999999988754332 555555554333333 6
Q ss_pred CccEEEec-----CCCh--hhHHHHHHhcccCCcEEEE
Q 021550 181 LADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 181 ~~D~V~~d-----~~~~--~~~l~~~~~~LkpgG~lv~ 211 (311)
+||+|+++ .+++ ..++.++.++++ |.+++
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 89999863 3443 358899999887 44443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-09 Score=77.09 Aligned_cols=96 Identities=27% Similarity=0.261 Sum_probs=74.4
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCCCCccEEEecC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFLDL 189 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~~~~D~V~~d~ 189 (311)
+++|+|||.|.++..++.. +..+++++|+++..++.+++....... ..+.+...|+.+... .. +++|+|+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEAD---ESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccC---CceEEEEEcc
Confidence 4899999999999888872 578999999999999988864433333 348889998875332 22 6799999766
Q ss_pred CC------hhhHHHHHHhcccCCcEEEEe
Q 021550 190 PQ------PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 190 ~~------~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. ...++..+.+.|+|||.+++.
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 356788999999999999853
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=93.87 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCC-cCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPD-EFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~-~~~~~~D~ 184 (311)
..|.+||++.|=+|+++++++.. ++.+|+.+|.|..+++.|++|+..++++ ..++++..|+.+ .+.. ...+.||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~-~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK-FLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH-HHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH-HHHHHhcCCCCCE
Confidence 45899999999999999987654 5678999999999999999999999975 568999999864 1111 01268999
Q ss_pred EEecCCCh-----------hhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDLPQP-----------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~~~-----------~~~l~~~~~~LkpgG~lv~~ 212 (311)
||+|+|.. ..++..+.++|+|||.+++.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999943 35788899999999998754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=97.61 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +.+...|+.. .+.. ...||+|++
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~-~l~~--~~~fD~V~l 131 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANA-LLHE--ERKFDVVDI 131 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHH-HHhh--cCCCCEEEE
Confidence 357999999999999999988753 4689999999999999999999999876 7789999863 2221 157999999
Q ss_pred cCCCh-hhHHHHHHhcccCCcEEEEe
Q 021550 188 DLPQP-WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 188 d~~~~-~~~l~~~~~~LkpgG~lv~~ 212 (311)
|++.. ..++..+...+++||.+++.
T Consensus 132 DP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 98643 56788888899999999985
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=91.87 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=91.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|.+|||+-+|-|.+++.+|.. +..+|+++|++|.+++.+++|+..+++.+.+..+++|+....... +.+|.|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI 260 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI 260 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence 346999999999999999999988 345599999999999999999999999988999999998533332 679999
Q ss_pred EecCCC-hhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 186 FLDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 186 ~~d~~~-~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+++.|. ...++..+.+.+++||.+..|....+
T Consensus 261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 998874 47799999999999999988755443
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-09 Score=82.77 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=92.9
Q ss_pred cCCceeeeccc---HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 86 SHRTQILYIAD---ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 86 ~~~~~~~~~~~---~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
++....+.|.. +..|+...+...|.-|||+|.|+|.+|.+++++.-+...++++|.++++.....+... . +
T Consensus 23 PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~-~ 96 (194)
T COG3963 23 PRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----G-V 96 (194)
T ss_pred CceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----C-c
Confidence 44444455544 2346677788889999999999999999999887677899999999999988876532 2 6
Q ss_pred EEEEecCCCCC--CCCcCCCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQG--FPDEFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~--~~~~~~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+++.+|+.+.. +.+.....||.||+..| ...++|+.+...|.+||.++.+.-
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 68888887522 33323367999998665 234789999999999999987543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=89.28 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. ...|+++|+++.+++.|++++...+..+++.+..+|+.. .. +.||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~---~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL---GRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc---CCcCEE
Confidence 467789999999999999999876 357999999999999999998887775568999988532 23 679999
Q ss_pred Eec-----CCCh--hhHHHHHHhcccCCcEEEEecCC
Q 021550 186 FLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d-----~~~~--~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++. .+.+ ..++..+.+.++ +|.++.+.+.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~ 167 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPY 167 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCc
Confidence 752 2322 245666666554 4445555543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=88.71 Aligned_cols=98 Identities=23% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....+. ...+.+...|+.. + . +.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-~---~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-S---GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-C---CCcC
Confidence 5789999999999999999976 47999999999999999999876421 1237788888753 2 2 6799
Q ss_pred EEEe-----cCCChh--hHHHHHHhcccCCcEEEEecCC
Q 021550 184 SIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 184 ~V~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+|++ +.++.. ..+..+. .+.+||.++.+.|.
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~ 252 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPK 252 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCc
Confidence 9874 344322 2445554 45677777766554
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=91.76 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=73.8
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. . .+++++.+|+...
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~ 87 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKV 87 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccC
Confidence 3445556888889999999999999999999999988 36899999999999999988754 2 3499999999754
Q ss_pred CCCCcCCCCccEEEecCCChh
Q 021550 173 GFPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~ 193 (311)
.+ ..+|.|+.++|-..
T Consensus 88 ~~-----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 88 DL-----PEFNKVVSNLPYQI 103 (258)
T ss_pred Cc-----hhceEEEEcCCccc
Confidence 43 34799999988543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=89.26 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=77.5
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|..+..|+..++++|++.|||+|.|+|.+|..+++. +.+|+++|+++.|+...++++......+..+++++|+.+..
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 555667999999999999999999999999999998 68999999999999999998876555577999999998755
Q ss_pred CCCcCCCCccEEEecCC
Q 021550 174 FPDEFSGLADSIFLDLP 190 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~ 190 (311)
++ .||.+|.+.|
T Consensus 121 ~P-----~fd~cVsNlP 132 (315)
T KOG0820|consen 121 LP-----RFDGCVSNLP 132 (315)
T ss_pred Cc-----ccceeeccCC
Confidence 54 4899998766
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-08 Score=79.64 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=107.2
Q ss_pred CCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHH---hcCCCCCCEEEEEcccccHHHHHHHHHhCCCc
Q 021550 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (311)
Q Consensus 58 ~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~ 134 (311)
-||+.+..-.+..++.+.|.-. +.++.++. .+.+.+|++||-+|+.+|....+++..++ .+
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RS---------------KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G 101 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRS---------------KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EG 101 (231)
T ss_pred ccCceeEEecCcceeeeCcchh---------------HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CC
Confidence 4777766555665665555432 33333443 45589999999999999999999999985 89
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEE
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~ 211 (311)
.++++|+++......-..+.+ .+++-.+.+|+....-....-+.+|+|+.|...|.+ +..++..+|++||.+++
T Consensus 102 ~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 102 RIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 999999999876655544433 234888899998511111122579999999877654 56888999999997665
Q ss_pred e---------cCCHHHHHHHHHHHhh-cCceee
Q 021550 212 F---------SPCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 212 ~---------~~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
. .+..+-+.+....|++ +|.-.+
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 3 1122445556666766 454443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-08 Score=82.27 Aligned_cols=142 Identities=23% Similarity=0.312 Sum_probs=103.5
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
++.+.++||.+||-+|+++|....++...++|.+.||++|+++.. +..|++ ..| |-.+..|+....-..
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtN-iiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTN-IIPIIEDARHPAKYR 221 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCC-ceeeeccCCCchhee
Confidence 356678999999999999999999999999999999999998753 344433 234 777888988532222
Q ss_pred cCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEEe--cCCH-------HHHHHHHHHHhh-c--CceeeEEEeece
Q 021550 177 EFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF--SPCI-------EQVQRSCESLRL-N--FTDIRTFEILLR 241 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~--~~~~-------~~~~~~~~~l~~-~--f~~~~~~e~~~r 241 (311)
.+-+.+|+||.|.+.|.+ +..++..+|++||.++++ .+|. ..++.-.+.|++ . -.++-++|...|
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFER 301 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheeccccccC
Confidence 233679999999887754 346788899999999986 2333 334555566665 3 355567788888
Q ss_pred eeEEeeee
Q 021550 242 TYEIRQWR 249 (311)
Q Consensus 242 ~~~v~~~~ 249 (311)
.+-+....
T Consensus 302 dha~VvG~ 309 (317)
T KOG1596|consen 302 DHACVVGV 309 (317)
T ss_pred CceEEEEE
Confidence 88777654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=85.39 Aligned_cols=113 Identities=23% Similarity=0.218 Sum_probs=70.1
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEec
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~d 188 (311)
..|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.|+...|+.++++++++|+.+ .+....... +|+||++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~-~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE-LLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH-HGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH-HHhhccccccccEEEEC
Confidence 36999999999999999998 478999999999999999999999998889999999975 221110022 8999998
Q ss_pred CC------------------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 189 LP------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 189 ~~------------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+| .|...-+-+....+-...+++|.|-...+.++.+..
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT-
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHh
Confidence 86 111111111222223346778888666666665554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=89.61 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=88.2
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~~~~~~~~ 176 (311)
+-..++..| .+||.+|.|.|..+..++++. +-.+++.+|+++..++.+++.+.... . +.+++++..|..+ -+.+
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-~v~~ 145 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-FLRD 145 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-HHHh
Confidence 334445555 699999999999999999984 46899999999999999999886543 2 3679999999874 2222
Q ss_pred cCCCCccEEEecCCCh---------hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+||+|++|..++ +++++.+.+.|+++|.+++.
T Consensus 146 -~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 146 -CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred -CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 114799999988766 78999999999999999986
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=86.09 Aligned_cols=137 Identities=18% Similarity=0.016 Sum_probs=96.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDI 169 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~ 169 (311)
|-+.+......++.. .++||.+|.|-|+.+..++++ + .+|+.+|++++.++.+++.+.... . +.+++++.. +
T Consensus 58 YHEmLvHppl~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~ 132 (262)
T PRK00536 58 ESELLAHMGGCTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L 132 (262)
T ss_pred HHHHHHHHHHhhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h
Confidence 334444444444444 489999999999999999998 3 499999999999999999654421 2 345666641 2
Q ss_pred CCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec--CC--HHHHHHHHHHHhhcCceeeEEEee
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~--~~--~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
. +...+.||+||+|...+..+.+.+.+.|+|||.++.-+ |. .+....+...+++.|.....+-..
T Consensus 133 ~-----~~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~ 201 (262)
T PRK00536 133 L-----DLDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAP 201 (262)
T ss_pred h-----hccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEec
Confidence 1 11116799999997777789999999999999999843 32 345566666776667655555443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-09 Score=92.21 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=74.0
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+..+++.+++.++++|||+|||+|.++..+++.. .+|+++|+++++++.+++++.. .+++++++|+....+
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCH
Confidence 334568888899999999999999999999999983 4999999999999999987642 349999999986444
Q ss_pred CCcCCCCccEEEecCCChh--hHHHHHH
Q 021550 175 PDEFSGLADSIFLDLPQPW--LAIPSAK 200 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~--~~l~~~~ 200 (311)
++ -..|.|+.|+|-.. .++..+.
T Consensus 102 ~~---~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 102 SE---LQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred HH---cCcceEEEeCCccchHHHHHHHH
Confidence 32 11588999988432 3444444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.6e-09 Score=94.48 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC---
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--- 173 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--- 173 (311)
+..++++++..++ .|||+-||.|.+++.+|.. ..+|+|+|+++++++.|++|+..+++.| +++..+++.+..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHH
Confidence 3456778887766 8999999999999999987 4799999999999999999999999987 999987764310
Q ss_pred -----CCC-----cCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhhc--CceeeEEE
Q 021550 174 -----FPD-----EFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRLN--FTDIRTFE 237 (311)
Q Consensus 174 -----~~~-----~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~~--f~~~~~~e 237 (311)
+.. .....+|+|++|+|-. ..+++.+.+ +. .++ |..|. ..+.+=...|.++ ...+..++
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~---~~-~iv-YvSCnP~tlaRDl~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK---LK-RIV-YVSCNPATLARDLKILKEGYKLEKVQPVD 335 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH---SS-EEE-EEES-HHHHHHHHHHHHCCEEEEEEEEE-
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc---CC-eEE-EEECCHHHHHHHHHHHhhcCEEEEEEEee
Confidence 100 0013689999999833 334554433 33 333 44443 4455555566664 56677777
Q ss_pred eeceeeEEee
Q 021550 238 ILLRTYEIRQ 247 (311)
Q Consensus 238 ~~~r~~~v~~ 247 (311)
.+.+.+|++.
T Consensus 336 mFP~T~HvE~ 345 (352)
T PF05958_consen 336 MFPQTHHVET 345 (352)
T ss_dssp SSTTSS--EE
T ss_pred cCCCCCcEEE
Confidence 7777777764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=87.19 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=76.7
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------------hcCCCCcEEEEEecCCC
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE------------RTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~g~~~~v~~~~~D~~~ 171 (311)
+...++.+||+.|||.|.-+.+|+.+ +..|+++|+|+..++.+.+... ... ...+++.++|+.+
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~ 114 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFN 114 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcC
Confidence 34556789999999999999999987 5789999999999998765210 011 1248999999986
Q ss_pred CCCCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
........+.||+|+ +.+| ....+++.+.++|+|||.+++.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 432111125799975 2233 3346899999999999998764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-08 Score=88.05 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEe-cCCC--CCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVR-DIQG--QGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~-D~~~--~~~~~~~~~~~D 183 (311)
++.++||||||+|.+...++.+. +..+++++|+++.+++.|++|+..+ ++.+++++... |... ..+.. ..+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~-~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH-KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc-cCCceE
Confidence 45799999999998888887765 4689999999999999999999998 78877888643 3321 11110 116899
Q ss_pred EEEecCC
Q 021550 184 SIFLDLP 190 (311)
Q Consensus 184 ~V~~d~~ 190 (311)
+|++|+|
T Consensus 192 livcNPP 198 (321)
T PRK11727 192 ATLCNPP 198 (321)
T ss_pred EEEeCCC
Confidence 9999988
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=86.86 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=76.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.++++|||+|||+|.++..+++.. ..|+++|+++.+++.+++++.. ..+++++.+|+...
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 34455568888888999999999999999999999884 4699999999999999987643 23489999999764
Q ss_pred CCCCcCCCCcc---EEEecCCChh--hHHHHHHhcccCCcE
Q 021550 173 GFPDEFSGLAD---SIFLDLPQPW--LAIPSAKKMLKQDGI 208 (311)
Q Consensus 173 ~~~~~~~~~~D---~V~~d~~~~~--~~l~~~~~~LkpgG~ 208 (311)
.++ .+| .|+.++|-.. ..+.++.. .++..
T Consensus 88 ~~~-----~~d~~~~vvsNlPy~i~~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 88 DLP-----DFPKQLKVVSNLPYNISSPLIFKLLE--KPKFR 121 (253)
T ss_pred Chh-----HcCCcceEEEcCChhhHHHHHHHHhc--cCCCc
Confidence 433 355 8888988543 23444443 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=88.58 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=94.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCCCCcCCC-Ccc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSG-LAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~v~~~~~D~~~~~~~~~~~~-~~D 183 (311)
...+||.+|.|.|..+..+++.- +..+|+.+|+++..++.|++.+..... +++++++.+|... -+.. ..+ .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~-~l~~-~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK-FLKE-TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-HHHT-SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-HHHh-ccCCccc
Confidence 56899999999999999988762 357999999999999999998765322 3579999999864 1111 114 899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecC----CHHHHHHHHHHHhhcCceeeEEEeec
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRLNFTDIRTFEILL 240 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~f~~~~~~e~~~ 240 (311)
+|++|..+| .++++.+.+.|+|+|.+++... ....+..+.+.++..|..........
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 999988764 3789999999999999998642 23445566666666677665555443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=80.02 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=73.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-C-C
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-Q-G 173 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~-~ 173 (311)
++..+...+ .++++|||+|||+|.++..+++.. ...++++|+++++++.++++ + +++..+|+.. . .
T Consensus 3 ~~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~ 70 (194)
T TIGR02081 3 DLESILNLI--PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEA 70 (194)
T ss_pred hHHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccc
Confidence 344455554 477899999999999998887763 46789999999999888642 2 6777888764 1 2
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+++ ++||+|++ +.+++..+++++.+.++ .+++..|...
T Consensus 71 ~~~---~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~ 113 (194)
T TIGR02081 71 FPD---KSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFG 113 (194)
T ss_pred cCC---CCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChh
Confidence 344 68999986 35677778888776654 4444445443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-08 Score=81.43 Aligned_cols=119 Identities=20% Similarity=0.309 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----CcC-CC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----DEF-SG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~~~-~~ 180 (311)
+.++..|+|+|+.+|+++..+++.+++.++|+++|+.|-- ...+ +.++++|+...... +.. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 5788999999999999999999999888889999997632 2334 89999999863211 111 14
Q ss_pred CccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 181 ~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
.+|+|++|+... ..++.-+...|+|||.+++-....+....+...++..|..++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe
Confidence 579999886521 14567788899999999986666666777888888777766544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=91.74 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=87.5
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAV------APTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
.+.+.|..+. +++.++...++.+|+|.+||+|.+...+.+.+ .....++|+|+++.++..|+.++..++....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3566677766 47788888899999999999999998888754 2468999999999999999998877665432
Q ss_pred -EEEEEecCCCCCCCCcCCCCccEEEecCCC--------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 162 -VTVGVRDIQGQGFPDEFSGLADSIFLDLPQ--------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 -v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~--------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+..+|........ ....||+|+.++|- .+.++..+.+.|++||+++++.|
T Consensus 106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 457788876422211 11689999988771 02478999999999999988777
Q ss_pred C
Q 021550 215 C 215 (311)
Q Consensus 215 ~ 215 (311)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 4
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-09 Score=80.57 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=88.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
-.|..++|+|||.|.+..+.+.. ....|+|+|+++++++.+..|+....+. ++++++|+.+..+.. +.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~---g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG---GIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC---CeEeeEE
Confidence 46889999999999999554433 4688999999999999999999887764 789999998655544 7899999
Q ss_pred ecCC-------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeeceeeEE
Q 021550 187 LDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 187 ~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~~~v 245 (311)
+|+| ..-++++.++++.+ ++|+-......+..-.|-. .|...+..+....-|+.
T Consensus 120 iNppFGTk~~~aDm~fv~~al~~~~-----~VySLHKtSTRey~~kLP~~ykFHK~k~vdiaVDlirf 182 (185)
T KOG3420|consen 120 INPPFGTKKKGADMEFVSAALKVAS-----AVYSLHKTSTREYRYKLPKLYKFHKRKEVDIAVDLIRF 182 (185)
T ss_pred ecCCCCcccccccHHHHHHHHHHHH-----HHHHHhcccHHHHHHhcchhhhhhhccccceeeeEEEe
Confidence 9987 22356666666655 4455444444444444443 35444444444444443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=89.29 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=73.9
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..+++.+.+.|+..+||++||.|+.+..+++.+++.++|+++|.++++++.|++++.. .+++.++++|+.+.
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK 81 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH
Confidence 34445578888899999999999999999999999986679999999999999999988755 34599999998751
Q ss_pred -CCCCcCCCCccEEEecCC
Q 021550 173 -GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~ 190 (311)
.++. ...++|.|++|+.
T Consensus 82 ~~l~~-~~~~vDgIl~DLG 99 (296)
T PRK00050 82 EVLAE-GLGKVDGILLDLG 99 (296)
T ss_pred HHHHc-CCCccCEEEECCC
Confidence 1221 0127999987653
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=92.29 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=74.2
Q ss_pred CCEEEEEcccccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+..|+|+|||+|.++...+++ .+...+|+++|.++.+....++.+..++..++|+++++|+++...+ .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 568999999999998766554 2345799999999999888888777888888899999999875555 589999
Q ss_pred EecCC-------ChhhHHHHHHhcccCCcEEE
Q 021550 186 FLDLP-------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~-------~~~~~l~~~~~~LkpgG~lv 210 (311)
|+.+- -..+.|..+.+.|||+|.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 96431 22357888899999999864
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=83.24 Aligned_cols=104 Identities=26% Similarity=0.219 Sum_probs=74.2
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-c-----C-----CCCcEEEEEecC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-T-----G-----VSSFVTVGVRDI 169 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~-----g-----~~~~v~~~~~D~ 169 (311)
+..+...++.+||+.|||.|.-...|+++ +..|+|+|+|+.+++.+.+.... . + ....|++.++|+
T Consensus 30 ~~~l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf 106 (218)
T PF05724_consen 30 LDSLALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF 106 (218)
T ss_dssp HHHHTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence 33456788889999999999999999987 57999999999999988432111 0 0 122478999999
Q ss_pred CCCCCCCcCCCCccEEE-------ecCCChhhHHHHHHhcccCCcEE
Q 021550 170 QGQGFPDEFSGLADSIF-------LDLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~-------~d~~~~~~~l~~~~~~LkpgG~l 209 (311)
.. +.....+.||+|+ +++.....+.+.+.++|+|||.+
T Consensus 107 F~--l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 107 FE--LPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp TT--GGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred cc--CChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 75 2221125799987 12234457899999999999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.9e-08 Score=88.30 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=105.8
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceE--EccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~--~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
..+++||+|++.. ...||.|..|+.|....+.-.. .+|... ....|.+. |+..|....+ .++...
T Consensus 77 ~~~~vGdrV~~~~--------~~~cg~c~~c~~g~~~~c~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~--~~P~~l~ 145 (343)
T PRK09880 77 SGLKEGQTVAINP--------SKPCGHCKYCLSHNENQCTTMR-FFGSAMYFPHVDGGFTRYKVVDTAQCI--PYPEKAD 145 (343)
T ss_pred ccCCCCCEEEECC--------CCCCcCChhhcCCChhhCCCcc-eeecccccCCCCCceeeeEEechHHeE--ECCCCCC
Confidence 3589999999875 3458888888877655544211 111100 00123332 4444432211 112111
Q ss_pred ----eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 90 ----QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 90 ----~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
....|-..+ ..+......++++||..|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..+.
T Consensus 146 ~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~ 220 (343)
T PRK09880 146 EKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVN 220 (343)
T ss_pred HHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEec
Confidence 112222222 234455667899999999987 888888998863 3579999999999888875 45433222
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....++.+ +... .+.+|+||-.... ...+..+.+.|++||.++.+..
T Consensus 221 ~~~~~~~~--~~~~-~g~~D~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 221 PQNDDLDH--YKAE-KGYFDVSFEVSGH-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCcccHHH--Hhcc-CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 22222211 1111 1458997754443 3478889999999999998764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=76.71 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=86.8
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+++|+|+|.|..++.++-.. |+.+++.+|.+...+...+.-....++.| +++.+.++++ .... ..||+|++-.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~---~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR---ESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT---T-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC---CCccEEEeehh
Confidence 89999999999999998775 88999999999999999999999999987 9999999985 2222 78999998544
Q ss_pred -ChhhHHHHHHhcccCCcEEEEecCC--HHHHHHHHHHHhh
Q 021550 191 -QPWLAIPSAKKMLKQDGILCSFSPC--IEQVQRSCESLRL 228 (311)
Q Consensus 191 -~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~ 228 (311)
....++..+.+.|++||.++++-.. .+.+.+....+..
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~ 165 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKK 165 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHC
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHH
Confidence 4446788899999999999988532 3444444444444
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-08 Score=88.64 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=84.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
-+|||+.||+|..++.++....+..+|+++|++++.++.+++|++.+++.+ +++.+.|+... +.. ....||+|++|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~-l~~-~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANV-LRY-RNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHH-HHH-hCCCCCEEEeCC
Confidence 589999999999999999885445799999999999999999999988775 88999998742 211 115699999998
Q ss_pred CCh-hhHHHHHHhcccCCcEEEEec
Q 021550 190 PQP-WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 190 ~~~-~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.. ..++..+.+.+++||.+++.+
T Consensus 123 fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 753 479999999999999999863
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.8e-08 Score=84.85 Aligned_cols=98 Identities=26% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
--.+..|||+|||+|.++...+.+ ++.+|+++|-| +|.+.|++.++.+.+.++|.++.+.+++..+| +++|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEE
Confidence 346789999999999999988887 68999999985 78899999999998888999999998876666 689998
Q ss_pred EecCCCh-------hhHHHHHHhcccCCcEEE
Q 021550 186 FLDLPQP-------WLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~~~-------~~~l~~~~~~LkpgG~lv 210 (311)
|..+-.. .+..-.+.+.|+|.|.+.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 8764322 123345679999999864
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.5e-08 Score=84.07 Aligned_cols=89 Identities=26% Similarity=0.314 Sum_probs=74.6
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
.+..|++.+++.+++.|||||+|.|.+|..|+++ ..+|+++|+++.+++..++.+. ...+++++++|+....++
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 3556899999999999999999999999999998 5789999999999999998765 223499999999876666
Q ss_pred CcCCCCccEEEecCCCh
Q 021550 176 DEFSGLADSIFLDLPQP 192 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~ 192 (311)
.. ..++.|+.|.|-.
T Consensus 92 ~l--~~~~~vVaNlPY~ 106 (259)
T COG0030 92 SL--AQPYKVVANLPYN 106 (259)
T ss_pred hh--cCCCEEEEcCCCc
Confidence 31 1679999998844
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=82.41 Aligned_cols=101 Identities=26% Similarity=0.306 Sum_probs=79.4
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++...+..+..+|||+|+|+|.++..++++. |..+++.+|. |+.++.+++ .++++++.+|+. ..++
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P--- 157 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLP--- 157 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCS---
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhc---
Confidence 35566677788899999999999999999986 8899999999 888888877 456999999998 6666
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCC--cEEEEecC
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQD--GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~Lkpg--G~lv~~~~ 214 (311)
. +|++++ +.++. ..+|+++.+.|+|| |+|++..+
T Consensus 158 -~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 158 -V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred -c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 999985 33332 36899999999999 99998633
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=92.74 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=95.0
Q ss_pred eeeecccHHHHHHhcCC-CCCCEEEEEcccccHHHHHHHHHhC-------------------------------------
Q 021550 90 QILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTTSLARAVA------------------------------------- 131 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~------------------------------------- 131 (311)
..+.+..++.++.+.+. .++..++|.+||+|.+.+..+....
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 44667777778888887 6789999999999999988765311
Q ss_pred ----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---------hhH---
Q 021550 132 ----PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLA--- 195 (311)
Q Consensus 132 ----~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------~~~--- 195 (311)
...+++++|+++.+++.|++|+..+|+.+.+++.++|+.+...+. ..+.+|+|+.|+|-- ..+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 123799999999999999999999999888999999997633221 114699999998821 112
Q ss_pred HHHHHhcccCCcEEEEecCCHH
Q 021550 196 IPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 196 l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+...++...+|+.++++++..+
T Consensus 330 lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCHH
Confidence 2333444459999998888654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-09 Score=87.55 Aligned_cols=115 Identities=20% Similarity=0.103 Sum_probs=83.0
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
..--|..++.++..++..+=.++||+|||||..+..+-.. ..++.++|+|+.|+++|.++ |+-+ ...+.|+
T Consensus 107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea 177 (287)
T COG4976 107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEA 177 (287)
T ss_pred cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence 3345777777888888887889999999999999888777 47899999999999999864 3322 2233443
Q ss_pred CCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 170 QGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. -.+...++.||+|.. .+.....++.-+...|+|||.|.+.+-
T Consensus 178 ~~-Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 178 VL-FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HH-HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 31 122122378999863 234555688889999999999997543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=76.29 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCC--------CCCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQG--------QGFPD 176 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~--------~~~~~ 176 (311)
++|+++|||+||.+|.++....++.+|.+.|.++|+-.- ..... +.++.+ |+.+ +.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999998431 11222 444554 6654 22343
Q ss_pred cCCCCccEEEecCCC---------hh-------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 177 EFSGLADSIFLDLPQ---------PW-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~---------~~-------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
..+|+|++|+.. .. .++.-+...++|+|.+++-....++...+...|...|.+++.+
T Consensus 135 ---r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 135 ---RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKV 207 (232)
T ss_pred ---CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEee
Confidence 689999988742 21 2455567788999999987777778888888888888877644
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-07 Score=81.06 Aligned_cols=127 Identities=21% Similarity=0.256 Sum_probs=92.1
Q ss_pred CceeeecccHHHHH--HhcCCCCCCEEEEEcccccHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 88 RTQILYIADISFVI--MYLELVPGCLVLESGTGSGSLTTSLARAVAPT---GHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 88 ~~~~~~~~~~~~i~--~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
....++..++.-++ -.++++||++|||+++.+|.-++++++.+... +.|++-|.++.++......+......+ +
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~ 211 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-L 211 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-e
Confidence 44456666655444 67889999999999999999999999987532 589999999999988887775544333 5
Q ss_pred EEEEecCCCCC------CCCcCCCCccEEEecCCCh----------------------------hhHHHHHHhcccCCcE
Q 021550 163 TVGVRDIQGQG------FPDEFSGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDGI 208 (311)
Q Consensus 163 ~~~~~D~~~~~------~~~~~~~~~D~V~~d~~~~----------------------------~~~l~~~~~~LkpgG~ 208 (311)
.+...|+...+ ..+.....||-|++|.|+. +.+|.+.+++||+||.
T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred eeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 55555554311 1111124799999988733 2468889999999999
Q ss_pred EEEecCCH
Q 021550 209 LCSFSPCI 216 (311)
Q Consensus 209 lv~~~~~~ 216 (311)
+| |+.|.
T Consensus 292 lV-YSTCS 298 (375)
T KOG2198|consen 292 LV-YSTCS 298 (375)
T ss_pred EE-EeccC
Confidence 98 87765
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=76.87 Aligned_cols=121 Identities=24% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCC-cCCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPD-EFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~-~~~~~ 181 (311)
...++.+|||+|||+|..++.++... +..+|+..|.++ .++.++.|++.++ ....+.+...|..+....+ .....
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 45678899999999999999888874 468999999998 9999999999876 4455777777654311000 01157
Q ss_pred ccEEEe-cC----CChhhHHHHHHhcccCCcEEEEecC-CHHHHHHHHHHHh
Q 021550 182 ADSIFL-DL----PQPWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLR 227 (311)
Q Consensus 182 ~D~V~~-d~----~~~~~~l~~~~~~LkpgG~lv~~~~-~~~~~~~~~~~l~ 227 (311)
||+|+. |. .....++..+.++|+++|.+++..+ -.....++.+.++
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~ 171 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLK 171 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH-
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhh
Confidence 999984 32 2334567788889999888554332 2233444555443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.8e-08 Score=81.09 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=69.6
Q ss_pred hcCCCCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 103 YLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 103 ~~~~~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.+...++. .++|+|||+|..+..++.+. .+|+++|+++.|++.|++.....-..--......+. ..+.. ..++
T Consensus 27 ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~g-~e~S 100 (261)
T KOG3010|consen 27 IASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLLG-GEES 100 (261)
T ss_pred HHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccccC-CCcc
Confidence 34445555 78999999997777788874 789999999999999886432211110011111111 12221 0278
Q ss_pred ccEEEe----cCCChhhHHHHHHhcccCCc-EEEEecCC
Q 021550 182 ADSIFL----DLPQPWLAIPSAKKMLKQDG-ILCSFSPC 215 (311)
Q Consensus 182 ~D~V~~----d~~~~~~~l~~~~~~LkpgG-~lv~~~~~ 215 (311)
+|+|++ +.-+...+.+.+.++||+.| .++++...
T Consensus 101 VDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999985 44566688999999999765 77765443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-07 Score=76.19 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---------------------------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--------------------------- 159 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--------------------------- 159 (311)
..+..+|||||-+|.+++++++.++ ...|.++||++..++.|+++++..--.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 4567899999999999999999985 578999999999999999987542100
Q ss_pred -------CcEEEEEecCC--CCCCCCcCCCCccEEEe---------cCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 160 -------SFVTVGVRDIQ--GQGFPDEFSGLADSIFL---------DLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 160 -------~~v~~~~~D~~--~~~~~~~~~~~~D~V~~---------d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+++.+...+.. ...+-......||+|++ |.. ..+.++.++.++|.|||+|++-
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00111111000 00010112257999863 222 3367999999999999999963
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-07 Score=83.69 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+-+++++.++..+||+.||||.+++.+++. ..+|+++|++++.++.|++|+..+|+.| .+|+.+-+++ .++...
T Consensus 374 ~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~-~~~sl~ 448 (534)
T KOG2187|consen 374 TIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED-LFPSLL 448 (534)
T ss_pred HHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh-ccchhc
Confidence 4778899999999999999999999999987 4899999999999999999999999998 9999996653 333221
Q ss_pred C---CCcc-EEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 179 S---GLAD-SIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 179 ~---~~~D-~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
. ++-+ ++++|+|.. ..++..+...-++--.+++.+-...+...+......
T Consensus 449 ~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~ 505 (534)
T KOG2187|consen 449 TPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSS 505 (534)
T ss_pred ccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcC
Confidence 1 2335 567888732 345555555444655555443333334444444433
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=82.17 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=101.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCccc---ccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW---IGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ 90 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~---iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 90 (311)
.+++||+|.+.. .+.||.|..|+.|....+.- +|......-....|++. |+..|... +...+|....
T Consensus 25 ~~~~GdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~~~-~~~~lP~~~~ 95 (280)
T TIGR03366 25 PLRLGQRVVWSV--------TVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGT-AIVPVPDDLP 95 (280)
T ss_pred CCCCCCEEEEcC--------CCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEecCCC-cEEECCCCCC
Confidence 699999998865 34589999998887555532 22110000000122222 33334321 1111121110
Q ss_pred -----eee-c-ccHHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 91 -----ILY-I-ADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 91 -----~~~-~-~~~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
.+. . ..+...+..+...++++||.+|+|+ |.++..+++..+ ..+|+++|.+++.++.+++ .|.+..+
T Consensus 96 ~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i 170 (280)
T TIGR03366 96 DAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALA 170 (280)
T ss_pred HHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEec
Confidence 010 0 0011234455667899999999987 888888888863 3458999999998887765 3543212
Q ss_pred EEEEecCCCCCCCCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~~~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.. ..+... ....+|+||-.... ...++.+.+.|+++|.++++..
T Consensus 171 ~~~--~~~-~~~~~~~~~~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 171 EPE--VLA-ERQGGLQNGRGVDVALEFSGA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred Cch--hhH-HHHHHHhCCCCCCEEEECCCC-hHHHHHHHHHhcCCCEEEEecc
Confidence 111 110 000000 11468997754433 3478889999999999998763
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-06 Score=78.74 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=92.2
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC---C----------------------------Cc---
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA---P----------------------------TG--- 134 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~---~----------------------------~~--- 134 (311)
...+....++.|+.+++..++..++|-=||+|.+.+..|.... | .+
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 3456666677799999999999999999999999998876631 1 11
Q ss_pred ----EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChh-------------hHHH
Q 021550 135 ----HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW-------------LAIP 197 (311)
Q Consensus 135 ----~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~-------------~~l~ 197 (311)
.++++|+++.+++.|+.|+...|+.+.|+|.++|+.. +.+.. +.+|+||+|+|--. .+.+
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~--l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD--LKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh--CCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3789999999999999999999999999999999975 33211 57999999998221 1233
Q ss_pred HHHhcccCCcEEEEecC
Q 021550 198 SAKKMLKQDGILCSFSP 214 (311)
Q Consensus 198 ~~~~~LkpgG~lv~~~~ 214 (311)
.+.+.++.-+..++.++
T Consensus 329 ~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 329 TLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHhcCCceEEEEcc
Confidence 44455555566665443
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-07 Score=79.41 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=77.3
Q ss_pred HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~ 176 (311)
..+.-+++++|++|..+|||. |..+++-|... +..+++++|++++.++.|++ +|..+.++.... |+.+ .+.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~-~i~~ 249 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVE-AIVE 249 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHH-HHHH
Confidence 577888999999999999998 77777777765 57999999999999999985 465543433322 2321 1122
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+..|.+|-. ......++.++..+.++|..++.
T Consensus 250 ~T~gG~d~~~e~-~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 250 LTDGGADYAFEC-VGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred hcCCCCCEEEEc-cCCHHHHHHHHHHHhcCCeEEEE
Confidence 222578887644 44445899999999999998875
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=75.23 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=60.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEE
Q 021550 137 YTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 137 ~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~l 209 (311)
+|+|+|++|++.|+++..... ..++++++++|+.+.++++ ++||+|++ +.+++..+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 479999999999987765322 2235999999998766665 78999975 4578889999999999999999
Q ss_pred EEecC
Q 021550 210 CSFSP 214 (311)
Q Consensus 210 v~~~~ 214 (311)
++...
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 87644
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.8e-07 Score=83.71 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=106.9
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccC-----CCCceEE-ccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-----PFGSMVF-SNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~-----~~G~~~~-~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|.+.. .+.||.|.+|+.|....|..... .+|.... ...|++. |+..|........++.
T Consensus 82 ~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~ 153 (393)
T TIGR02819 82 FIKIGDIVSVPF--------NIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPD 153 (393)
T ss_pred cccCCCEEEEec--------ccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCC
Confidence 489999999876 45699999999998776653210 1111000 0123333 5555532111112222
Q ss_pred Cc----------eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 88 RT----------QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 88 ~~----------~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.. .+..+-..+ ..+....+.++++||..|+|+ |.++..+++..+ ...+++.|.+++.++.|++
T Consensus 154 ~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~---- 228 (393)
T TIGR02819 154 RDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS---- 228 (393)
T ss_pred cccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----
Confidence 11 111111111 134456788999999999987 888888888864 3456677888888888875
Q ss_pred cCCCCcEEEEE-ecCCCCCCCCc-CCCCccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCC
Q 021550 156 TGVSSFVTVGV-RDIQGQGFPDE-FSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 156 ~g~~~~v~~~~-~D~~~~~~~~~-~~~~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.|.. .+.... .+.. ..+... ....+|++|-....+. ..++.+.+.+++||.++++...
T Consensus 229 ~Ga~-~v~~~~~~~~~-~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 229 FGCE-TVDLSKDATLP-EQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cCCe-EEecCCcccHH-HHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3542 121111 1111 111110 1136899875444432 4799999999999999987653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=78.94 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=76.3
Q ss_pred HHHhcC-CCC--CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC----
Q 021550 100 VIMYLE-LVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---- 172 (311)
Q Consensus 100 i~~~~~-~~~--g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---- 172 (311)
+.+..+ +.+ +.+|||+||++|+++..++++.++.++|+++|+.+. ....+ +..+.+|+.+.
T Consensus 12 i~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 12 IDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIK 79 (181)
T ss_dssp HHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSH
T ss_pred HHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHH
Confidence 444455 444 489999999999999999998655799999999876 11122 55555555431
Q ss_pred CCCCc---CCCCccEEEecCC---------Chh-------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 173 GFPDE---FSGLADSIFLDLP---------QPW-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 173 ~~~~~---~~~~~D~V~~d~~---------~~~-------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
.+... ..+.+|+|++|.. +.. ..+.-+...|+|||.+++-.-.......+...++..|..+
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 11111 1158999999872 111 3455667889999988764333322347777777777765
Q ss_pred e
Q 021550 234 R 234 (311)
Q Consensus 234 ~ 234 (311)
.
T Consensus 160 ~ 160 (181)
T PF01728_consen 160 K 160 (181)
T ss_dssp E
T ss_pred E
Confidence 4
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-07 Score=82.66 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=72.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCcEEEEEecCCCC----CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVSSFVTVGVRDIQGQ----GF 174 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------g~~~~v~~~~~D~~~~----~~ 174 (311)
++.+|||+|||-|+-+.-.... .-..++++|++...++.|+++.... ...-...++.+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999988865555444 4589999999999999999988321 1112356777777642 22
Q ss_pred CCcCCCCccEEEecCC---------ChhhHHHHHHhcccCCcEEEEecCCHHHH
Q 021550 175 PDEFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
... ...||+|-+-.. ....+|.++...|+|||+++.-.|..+.+
T Consensus 140 ~~~-~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPR-SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SST-TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred ccc-CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 320 148999854221 12358999999999999999888876655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=79.96 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=71.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~~~~D~V~~ 187 (311)
+|||+|||.|.....+++.. ++ -+|+++|.++.+++..+++..... .++.....|+....+.. ...+++|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 89999999999998888764 45 789999999999999998754322 33555556665422111 11278998752
Q ss_pred ----c---CCChhhHHHHHHhcccCCcEEEEe
Q 021550 188 ----D---LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 188 ----d---~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. +.....+++++.++|||||.+++-
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2 222346899999999999999974
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=79.15 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=75.9
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-CCcEE
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-------RTGV-SSFVT 163 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~g~-~~~v~ 163 (311)
+.+..+..+++.+++.+++..+|+|||.|....+++... +..+.+|+|+.+...+.|+.... ..|. ...++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 445556678899999999999999999999998888765 45679999999998887775432 2333 23477
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecCC
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+..+|+.+..+....-...|+||++-- +....|...+..||+|.+++...+.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 888888652221110134799998633 3345677778889999998865443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-07 Score=77.11 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=97.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-------CCCcEEEEEecCCCCCCCCcC-CC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VSSFVTVGVRDIQGQGFPDEF-SG 180 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-------~~~~v~~~~~D~~~~~~~~~~-~~ 180 (311)
.-.+.|||||-|++...|+..+ |+.-++|+||.....+..++++...+ +.| +.+...++.. .++... .+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk-~lpn~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMK-FLPNFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchh-hccchhhhc
Confidence 3468999999999999999986 78999999999999999988887654 333 6666666653 222110 14
Q ss_pred CccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEee
Q 021550 181 LADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 181 ~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~~ 247 (311)
..+-.|+-.|+|. ..+.+..-+|+.||.++.... +.++..++...|...-.+|.+..++...
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD----v~elh~wm~~~~e~hplfe~lt~ee~~~- 212 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD----VKELHEWMVKHLEEHPLFERLTEEEEEN- 212 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee----HHHHHHHHHHHHHhCcHhhhcchhhhcC-
Confidence 4555566566552 467788889999999997555 4444444444444444344333322221
Q ss_pred eeccCCCCCCCCCCCccccccccccccCCCCCCCC
Q 021550 248 WRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENP 282 (311)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (311)
++++.-..+.+++|.++..+.
T Consensus 213 --------------d~~v~~~~~~teeg~kv~r~~ 233 (249)
T KOG3115|consen 213 --------------DPCVELLSNATEEGKKVARNG 233 (249)
T ss_pred --------------CcchhhhhhhhhhcccccccC
Confidence 334444555666776665544
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=72.40 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=86.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEe
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFL 187 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~ 187 (311)
+.+++|||+|.|..++.+|-. .|+.+|+.+|.....+...+......+++| ++++++.+++.. .+ .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~-~~---~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFG-QE---KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcc-cc---cccCcEEEe
Confidence 689999999999999998844 478889999999999999999888999987 999999987522 21 23 999987
Q ss_pred cCC-ChhhHHHHHHhcccCCcEEEEe--cCCHHHHHHHHHHHhh
Q 021550 188 DLP-QPWLAIPSAKKMLKQDGILCSF--SPCIEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~-~~~~~l~~~~~~LkpgG~lv~~--~~~~~~~~~~~~~l~~ 228 (311)
-.- .....++-+..++++||.++++ ....++..+.......
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~ 185 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP 185 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHh
Confidence 433 3344677889999999988654 2233445555555544
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-07 Score=83.59 Aligned_cols=180 Identities=22% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT---- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~---- 89 (311)
.+++||+|+... ...||.|.+|+.|....+.-....+|.. ..|.+. |+..|....+ .++...
T Consensus 75 ~~~~Gd~V~~~~--------~~~c~~c~~c~~g~~~~c~~~~~~~g~~---~~G~~ae~~~v~~~~~~--~~P~~~~~~~ 141 (339)
T cd08239 75 HFRVGDRVMVYH--------YVGCGACRNCRRGWMQLCTSKRAAYGWN---RDGGHAEYMLVPEKTLI--PLPDDLSFAD 141 (339)
T ss_pred cCCCCCEEEECC--------CCCCCCChhhhCcCcccCcCcccccccC---CCCcceeEEEechHHeE--ECCCCCCHHH
Confidence 478899998866 3458888888877755553211112211 112221 3333332211 111110
Q ss_pred --eeeeccc-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 90 --QILYIAD-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 90 --~~~~~~~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
.+..+-. +-..+..+++.+|++||..|+|. |.++..+++..+ ..+|++++.+++..+.+++ .|.+..+...
T Consensus 142 aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~ 216 (339)
T cd08239 142 GALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPERLELAKA----LGADFVINSG 216 (339)
T ss_pred hhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEcCC
Confidence 1111111 11244567788999999999887 778888888863 3349999999998887754 3543212221
Q ss_pred EecCCCCCCCCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 166 VRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 166 ~~D~~~~~~~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+ . ..+.+.. ...+|+||-... ....+..+.+.|+++|.++++...
T Consensus 217 ~~~-~-~~~~~~~~~~~~d~vid~~g-~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 217 QDD-V-QEIRELTSGAGADVAIECSG-NTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred cch-H-HHHHHHhCCCCCCEEEECCC-CHHHHHHHHHHhhcCCEEEEEcCC
Confidence 111 1 0011001 136999764443 344678888999999999987643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=81.59 Aligned_cols=107 Identities=22% Similarity=0.214 Sum_probs=71.3
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....++++|++||..|+|. |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..+.....|..+ .+.....
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~-~i~~~~~ 257 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVE-QVRELTG 257 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHH-HHHHHhC
Confidence 3556788999999999987 788888888863 3479999999999888864 4543222221112111 1111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+||-.... ...+..+.+.|+++|.++.+..
T Consensus 258 ~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 468997744433 3478888999999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-07 Score=74.85 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=77.0
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
+.+.|+|+|+|.++...+.. +.+|+++|.+|...+.|++|+...|..+ ++++.+|+.+-.| +..|+|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f-----e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF-----ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc-----cccceeHHHH
Confidence 79999999999999888877 5899999999999999999998778766 9999999986444 4579988654
Q ss_pred CC-------hhhHHHHHHhcccCCcEEE
Q 021550 190 PQ-------PWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 190 ~~-------~~~~l~~~~~~LkpgG~lv 210 (311)
-+ ....++.++..|+-.+.++
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 32 2347888899999999887
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=74.30 Aligned_cols=114 Identities=23% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHHhcCCCC-CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~~~~-g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++.++.-.| ...|.|+|||.+.++..+ ....+|+++|+-.. . -.+..+|+...++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~--------------n--~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP--------------N--PRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------S--TTEEES-TTS-S--T
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC--------------C--CCEEEecCccCcCCC
Confidence 34677776555 469999999999887443 23357999998532 1 236678998888887
Q ss_pred cCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecC--CHHHHHHHHHHHhh-cCceee
Q 021550 177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSP--CIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~-~f~~~~ 234 (311)
+++|++|+.+. +-..++.++.++|||||.+.+... -.+....+.+.+.. ||....
T Consensus 121 ---~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 121 ---ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp ---T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred ---CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 89999987543 455799999999999999988633 33456777777777 776554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-07 Score=76.48 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.1
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++...++ .++.+|||+|||+|.++..+++. +..+|+++|+++.++.. .+++. ..+.+...|+....+.+.
T Consensus 66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~~------~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQDE------RVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcCC------CeeEeecCCcccCCHhHc
Confidence 4455454 46789999999999999999987 46899999999987765 22211 101222333332111110
Q ss_pred --CCCCccEEEecCCChhhHHHHHHhcccCCcEEEE-ecC
Q 021550 178 --FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS-FSP 214 (311)
Q Consensus 178 --~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~-~~~ 214 (311)
.-..+|++|+...- .+..+.+.|+| |.+++ +-|
T Consensus 138 ~~d~~~~DvsfiS~~~---~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---ILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred CCCceeeeEEEeehHh---HHHHHHHHhCc-CeEEEEcCh
Confidence 00367877765332 68889999999 76654 444
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=83.29 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--CCcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~~~ 178 (311)
...+|||.|||+|.+...++..+.. ...++++|+++..+..++.++...+..+ +.+...|.....+ ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeecccccccccccccc
Confidence 3458999999999999999887621 2578999999999999999987765222 5555555442111 1111
Q ss_pred CCCccEEEecCC
Q 021550 179 SGLADSIFLDLP 190 (311)
Q Consensus 179 ~~~~D~V~~d~~ 190 (311)
.+.||+|+.|+|
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 257999999887
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-06 Score=76.84 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF---HEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
+.+|++||.+|+|. |.++.++++..+ .+|++++. +++.++.+++ .|... +.....+.. . ... ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~~-v~~~~~~~~-~-~~~--~~~ 238 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGATY-VNSSKTPVA-E-VKL--VGE 238 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCEE-ecCCccchh-h-hhh--cCC
Confidence 56899999999987 888899999863 58999987 6777776653 45431 211111111 1 111 146
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+||-....+ ..+..+.+.|+++|.++++..
T Consensus 239 ~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEATGVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECcCCH-HHHHHHHHHccCCcEEEEEec
Confidence 99977554433 478889999999999998754
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=75.90 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC-C----CcEEEEEecCCCCC----CCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-S----SFVTVGVRDIQGQG----FPD 176 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~----~~v~~~~~D~~~~~----~~~ 176 (311)
.++++.++++|||-|+-++-.-++ +-+.++++||.+..++.|+++...... . -.+.|+.+|..... ++.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 368899999999998876655554 458999999999999999988764321 1 13678888876521 211
Q ss_pred cCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 177 EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 177 ~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
. ...||+|-+-. ....-+|.++.+.|+|||.++--.|....+.+-+...
T Consensus 193 ~-dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 193 K-DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred C-CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 1 13499984311 1223478999999999999998888766544444443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=80.30 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcE-EEEecCCHHHHhhhhcCCc----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF-VYLLAPTPELWTLVLSHRT---- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~---- 89 (311)
.++.||+|+... ...|+.|..|..|....+...+. .|.. ..|.+ -|+..|....+ .++...
T Consensus 74 ~~~vGd~V~~~~--------~~~c~~c~~c~~g~~~~c~~~~~-~g~~---~~G~~aey~~v~~~~~~--~lP~~~s~~~ 139 (347)
T PRK10309 74 DLHPGDAVACVP--------LLPCFTCPECLRGFYSLCAKYDF-IGSR---RDGGNAEYIVVKRKNLF--ALPTDMPIED 139 (347)
T ss_pred CCCCCCEEEECC--------CcCCCCCcchhCcCcccCCCcce-eccC---CCCccceeEEeehHHeE--ECcCCCCHHH
Confidence 478999999865 34588888888887655543211 1110 11222 13333332211 112111
Q ss_pred -eeeecccHHH-HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 90 -QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 90 -~~~~~~~~~~-i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
..+.+...++ .+....+.++++||..|+|+ |.++.++++..+ ...|++++.+++..+.+++ .|....+....
T Consensus 140 aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~ 214 (347)
T PRK10309 140 GAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSRE 214 (347)
T ss_pred hhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcc
Confidence 1111211111 23456678899999999987 888888888863 3457899999988887653 34432122111
Q ss_pred ecCCC--CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 167 RDIQG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 167 ~D~~~--~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+... ..... ..+|.+++|.......+..+.+.|++||.++++..
T Consensus 215 ~~~~~~~~~~~~---~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 215 MSAPQIQSVLRE---LRFDQLILETAGVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred cCHHHHHHHhcC---CCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 11000 01111 46885566665555688999999999999998754
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-06 Score=79.11 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=70.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~~ 178 (311)
...++.+|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..++.... +..+ .+....
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~ 265 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHE-RIREMT 265 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHH-HHHHHh
Confidence 456789999999999987 888888888863 3479999999999888864 454332222111 1110 011111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-.... ...+..+...+++| |.++++..
T Consensus 266 ~~g~dvvid~~G~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 GGGVDYSFECAGN-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCCEEEECCCC-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 1368987644443 35788888999997 99888754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-07 Score=70.93 Aligned_cols=97 Identities=29% Similarity=0.305 Sum_probs=41.5
Q ss_pred EEEcccccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 113 LESGTGSGSLTTSLARAVAPTG--HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
||+|+..|..+..+++.+.+.+ +++++|..+. .+.+++.++..++.++++++.++..+ .++....+++|++++|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~-~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD-FLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH-HHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH-HHHHcCCCCEEEEEECCC
Confidence 6999999999999988775554 7999999986 34445555556666779999999864 222111268999999986
Q ss_pred Ch----hhHHHHHHhcccCCcEEEE
Q 021550 191 QP----WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 191 ~~----~~~l~~~~~~LkpgG~lv~ 211 (311)
.. ...+..+.+.|+|||.+++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 43 3567889999999999885
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=70.02 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCC
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP 175 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~ 175 (311)
..++..+.+.|+..++|.--|.|+.+..++..+++.++++++|.++.+++.|++.+...+ .++.+++.++.. ..+.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 347888999999999999999999999999998777899999999999999999987655 558888887754 1112
Q ss_pred CcCCCCccEEEecC
Q 021550 176 DEFSGLADSIFLDL 189 (311)
Q Consensus 176 ~~~~~~~D~V~~d~ 189 (311)
....+++|.|++|+
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 21125788887543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-06 Score=69.32 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=91.8
Q ss_pred EEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEec-C
Q 021550 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLD-L 189 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~d-~ 189 (311)
|.||||--|++..+|++. +...+++++|+++.-++.|++++...++.+++++..+|-. ..++. +. .|.|++. +
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL-~~l~~---~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL-EVLKP---GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG-GG--G---GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc-cccCC---CCCCCEEEEecC
Confidence 689999999999999988 4456899999999999999999999999999999999976 34554 43 7888753 3
Q ss_pred CC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC--ceeeEEEeeceeeEEeeee
Q 021550 190 PQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF--TDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 190 ~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f--~~~~~~e~~~r~~~v~~~~ 249 (311)
.. -..+|+.....++....|+ ..|. .....+.++|.+ +| .+...++..-|-|.+....
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lI-LqP~-~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLI-LQPN-THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEE-EEES-S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEE-EeCC-CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 32 2356666666666555665 4554 457788888888 44 5556666667888887654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.4e-06 Score=71.56 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
...++||+|+|.|..|..++..+ .+|++.|.|+.|....+ +.|. +++. ..+ +... ...||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~----~vl~--~~~--w~~~-~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGF----TVLD--IDD--WQQT-DFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCC----eEEe--hhh--hhcc-CCceEEEee
Confidence 35689999999999999999885 67999999999965544 4453 3332 221 2211 157999863
Q ss_pred -c----CCChhhHHHHHHhcccCCcEEEE
Q 021550 188 -D----LPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 -d----~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
| ...|...|+.+.+.|+|+|++++
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 2 35788899999999999999876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.8e-06 Score=63.73 Aligned_cols=100 Identities=19% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++...+....+.+|||+|||+|. ++..|++. +..|+++|+++..++.++++ + +++...|+.+..+.-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~- 74 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI- 74 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH-
Confidence 45555555567899999999997 77666654 57999999999998888764 2 678889987532221
Q ss_pred CCCCccEEEecCCChhhHHHHHHhccc-CCcEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lk-pgG~lv~~ 212 (311)
-+.+|+|+.--|.+. ....+.++-+ -|.-+++.
T Consensus 75 -y~~a~liysirpp~e-l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 75 -YKNAKLIYSIRPPRD-LQPFILELAKKINVPLIIK 108 (134)
T ss_pred -HhcCCEEEEeCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 157999886444332 3333333332 34455543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-06 Score=72.42 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=79.2
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.+++.|||+|+|.|.+|..+++. ..+++++|+++.+++..++.+. ...+++++.+|+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence 3455567899999999999999999999999999998 3899999999999999988654 234599999999864
Q ss_pred CCCCcCCCCccEEEecCCChh--hHHHHHHhcccC
Q 021550 173 GFPDEFSGLADSIFLDLPQPW--LAIPSAKKMLKQ 205 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~--~~l~~~~~~Lkp 205 (311)
..+.........|+.+.|-.. .++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecccchHHHHHHHhhcccc
Confidence 443211134567788887432 356666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.8e-06 Score=75.52 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC-
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF- 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~- 178 (311)
....++.+|++||..|+|+ |..+.++++..+ ..+|+++|.+++..+.+++ .|.+..++....|... .+....
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~-~i~~~~~ 242 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVE-AIRALTG 242 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHH-HHHHHhC
Confidence 3456788999999999887 888888888863 3469999999998888864 4543212221112111 011001
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ...+..+.+.++++|+++++..
T Consensus 243 ~~g~d~vid~~g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDAVGR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEECC
Confidence 1358987644433 3467888999999999998764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-06 Score=71.75 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=75.7
Q ss_pred HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~ 174 (311)
.+...+++.||++|..+|.|. |...+.-++.. ++++++++|++++..+.|++ .|..+-++.. |..+ +.+
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~--d~~~~i~evi 255 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKE----FGATEFINPK--DLKKPIQEVI 255 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHh----cCcceecChh--hccccHHHHH
Confidence 466778899999999999998 55555556664 68999999999999999985 5665544443 4442 112
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEe
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~ 212 (311)
.+...+.+|.-|-..... +.+.+++...+.| |.-++.
T Consensus 256 ~EmTdgGvDysfEc~G~~-~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 256 IEMTDGGVDYSFECIGNV-STMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHHhcCCceEEEEecCCH-HHHHHHHHHhhcCCCeEEEE
Confidence 233447889877554443 4788888888888 876654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.4e-06 Score=75.99 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=69.3
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~~ 178 (311)
...++.+|++||..|+|+ |.++.++++..+ ...|++++.+++..+.|++ .|.+..+..... +.. ..+.+..
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~-~~v~~~~ 260 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQ-QVIKRMT 260 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHH-HHHHHHh
Confidence 346788999999999987 888888888863 3468899999988887754 454321221110 111 1111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-... ....+..+.+.|++| |.++++..
T Consensus 261 ~~g~d~vid~~G-~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 GGGADYSFECVG-DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCCCEEEECCC-ChHHHHHHHHhhccCCCEEEEECC
Confidence 136898764444 334678899999999 99988754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.1e-06 Score=72.25 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=65.7
Q ss_pred CEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|+=||+|+=- .++.+++..+.+..|+++|+++++.+.+++.+. ..++...+.++.+|.......- ..||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEEE
Confidence 599999999944 445566555567889999999999999998887 5567777999999987532222 57999986
Q ss_pred cC--C----ChhhHHHHHHhcccCCcEEEEec
Q 021550 188 DL--P----QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 d~--~----~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.. . ...+++.++.+.++||+.+++-+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 43 2 55689999999999999998753
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=73.86 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
+.+++|++||.+|+|+ |.++..+++++.+..+|+++|.+++.++.|++ .+.. . ...+ +.+. ..+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~-~~~~-----~~~~--~g~ 223 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---Y-LIDD-----IPED--LAV 223 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---e-ehhh-----hhhc--cCC
Confidence 3468899999999987 77777777764345689999999998888764 2221 1 1111 1110 248
Q ss_pred cEEEecCCC--hhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+||-.... ....+..+.+.|+++|+++++..
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 987744442 34578999999999999998753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=71.50 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHH--hcC----CCCcEEEEEecCCCCCCCCcC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFE--RTG----VSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~--~~g----~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...+||.+|.|-|.-...+.+. | -.+|+-+|++|+|++.++++.. ..+ .+.+++++..|+.. |-...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr~a 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY--PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLRTA 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC--CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHHhh
Confidence 345578999999999999998887 5 6899999999999999995432 211 14578888888864 32222
Q ss_pred CCCccEEEecCCChh----------hHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~----------~~l~~~~~~LkpgG~lv~~ 212 (311)
.+.||.||.|.|+|. ++...+.+.|+++|.+++-
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 368999999998874 5677889999999999975
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.4e-06 Score=70.57 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=81.3
Q ss_pred HHHHHhcCCCCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~~~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++..+..+|+. .|.|+|||-+.++. . ....|+++|+.+ + +-+++.+|+...++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~--~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V--NERVIACDMRNVPLED 226 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C--CCceeeccccCCcCcc
Confidence 3477777777664 68999999988764 2 247899999842 1 1456788998878887
Q ss_pred cCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEec--CCHHHHHHHHHHHhh-cCceee
Q 021550 177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFS--PCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
+++|++++++. +-..++.++.++|++||.+++-. .-...+..+++.+.. ||....
T Consensus 227 ---~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 227 ---ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ---CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 89999986543 45578999999999999998742 223445567777766 775433
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-06 Score=75.87 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=69.9
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE--ecCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV--RDIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~D~~~~~~~~~~ 178 (311)
....+++|++||..|+|+ |.++.++|+.++ ..+|+++|.+++.++.+++ .|.+..++... .+.. ..+.+..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~-~~v~~~~ 252 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQ-EVIVEIT 252 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHH-HHHHHHh
Confidence 456789999999999987 888888898863 3479999999999888864 35433222211 0111 0011111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-.... ...+..+.+.++++ |.++++..
T Consensus 253 ~~g~d~vid~~G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 DGGVDYSFECIGN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1368987754443 34678888999886 99987764
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00017 Score=61.86 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.|++||-+|-.--. +++++ ..+...+|+.+|+++..++..++.+++.|+. ++....|+. .++|+...++||+++.
T Consensus 44 ~gk~il~lGDDDLt-SlA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR-~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLR-DPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TT-S---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcHH-HHHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccc-ccCCHHHhcCCCEEEe
Confidence 58999999966522 22222 2345689999999999999999999999986 999999998 6888777789999999
Q ss_pred cCCChh----hHHHHHHhcccCCc-EEEE-ecCC---HHHHHHHHHHHhh-cCcee
Q 021550 188 DLPQPW----LAIPSAKKMLKQDG-ILCS-FSPC---IEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 188 d~~~~~----~~l~~~~~~LkpgG-~lv~-~~~~---~~~~~~~~~~l~~-~f~~~ 233 (311)
|+|... .++......||.-| ..++ ++.. .....++.+.+.+ +|.-.
T Consensus 119 DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 119 DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999654 46788889999666 3332 2221 2333445555555 55533
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.3e-06 Score=72.87 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=63.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+.-+++.+.+.++..++|.--|.|+.+..+++.+.+ ++++++|.++++++.|++++... .+++.+++.++.+.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHH
Confidence 444555888889999999999999999999999998754 99999999999999998876543 46699999888651
Q ss_pred -CCCCc-CCCCccEEEecCC
Q 021550 173 -GFPDE-FSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~-~~~~~D~V~~d~~ 190 (311)
.+... ....+|.|++|+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHccCCCccCEEEEccc
Confidence 11111 1157999986543
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-06 Score=74.40 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=70.4
Q ss_pred CEEEEEcccccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHH------------------Hhc--------
Q 021550 110 CLVLESGTGSGS----LTTSLARAVAP---TGHVYTFDFHEQRAASAREDF------------------ERT-------- 156 (311)
Q Consensus 110 ~~VLdiG~G~G~----~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~------------------~~~-------- 156 (311)
-+|+.+||++|- +++.+.+..+. ..+|+|.|+++.+++.|++-. ...
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999995 33333443221 357999999999999998731 110
Q ss_pred ----CCCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 157 ----GVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 157 ----g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.+...|.|...|+.+..++.. +.||+|++ +.+....++..+.+.|+|||+|++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~--~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVP--GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccC--CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 022457788888875444321 68999985 334556799999999999998874
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=73.58 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
....++.+|++||..|+|. |.++.++++..+ ..+|++++.+++..+.+++ .|....+..... ++. ..+...
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~-~~v~~~ 253 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQ-EVIAEM 253 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHH-HHHHHH
Confidence 3456789999999999887 778888888863 3489999999998887754 454322222111 010 001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
..+.+|+++- .......+..+.+.+++| |.++++..
T Consensus 254 ~~~~~d~vid-~~G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 254 TGGGVDYSFE-CTGNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred hCCCCCEEEE-CCCChHHHHHHHHHhhcCCCEEEEECc
Confidence 1146898664 333344778888999996 99988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-06 Score=71.70 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.-.+.||+|+|-|..|..++..+ ..+|..+|..+.+++.|++.+... .....++.+..+.+...++ +.||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~---~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEE---GKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCC---CcEeEEEe
Confidence 34689999999999998776543 579999999999999999876542 1233566666665432222 68999986
Q ss_pred c-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 188 D-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
- +. +..++|.++...|+|+|.|++
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 3 33 335789999999999999987
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=71.34 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=65.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC----CCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG----QGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~----~~~~~~~~~~~D 183 (311)
....|+|.-||.|+.+.+.+.. ...|+++|++|..+..|+.|++..|++++|+|+++|+.+ +.+.. ..+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K---~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADK---IKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhh---heee
Confidence 5578999999999999998887 479999999999999999999999999999999999975 22333 4578
Q ss_pred EEEecCC
Q 021550 184 SIFLDLP 190 (311)
Q Consensus 184 ~V~~d~~ 190 (311)
+|+..+|
T Consensus 168 ~vf~spp 174 (263)
T KOG2730|consen 168 CVFLSPP 174 (263)
T ss_pred eeecCCC
Confidence 8887654
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=74.68 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
.....+++|++||..|+|. |.++..+++.++ ..+|++++.+++.++.+++ .|.+..++.... +... .+...
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~-~v~~~ 252 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQ-VLVEM 252 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHH-HHHHH
Confidence 3456789999999999887 788888888863 3479999999998887754 454332222111 1110 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
..+.+|+|+-.... ...+..+.+.|+++ |+++.+..
T Consensus 253 ~~~g~d~vid~~g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 TDGGVDYTFECIGN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred hCCCCcEEEECCCC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 11468997744433 34788889999987 99988754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.6e-06 Score=72.81 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=73.0
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..+++.+.+.+|..++|.-+|.|+.+..+++.++ .++|+++|.++.+++.|++++... .+++.++++++.+.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFF 82 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHH
Confidence 33444578888899999999999999999999999875 499999999999999999988654 35699999888651
Q ss_pred -CCCCcCCCCccEEEecCC
Q 021550 173 -GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~ 190 (311)
.+......++|.|++|+.
T Consensus 83 ~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHhcCCCcccEEEEecc
Confidence 121111146999987653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=70.96 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+++++|++||..|+|+ |.++.++++.. +.+|++++.+++.++.|++ .|.+..++ ... ...
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~--~~~--- 221 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYD--TPP--- 221 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----ccc--cCc---
Confidence 4457789999999999876 77778888886 3579999999998877765 46543121 111 111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++...... ..+..+.+.|++||+++++..
T Consensus 222 ~~~d~~i~~~~~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPAG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCcH-HHHHHHHHhhCCCcEEEEEec
Confidence 4578766433333 478899999999999998764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=72.06 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCC------CCceEEccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSMVFSNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~------~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|++... ...||.|..|+.|....++-.... .|.. ..|.+. |+..|....+ .++.
T Consensus 87 ~~~vGdrV~~~~~-------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~---~~G~~aey~~v~~~~~~--~lP~ 154 (360)
T PLN02586 87 KFKEGDRVGVGVI-------VGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK---NYGGYSDMIVVDQHFVL--RFPD 154 (360)
T ss_pred ccCCCCEEEEccc-------cCcCCCCccccCCCcccCCCccccccccccCCCc---CCCccceEEEEchHHee--eCCC
Confidence 3788999976442 224888999988876665422110 0111 122221 4444432211 1121
Q ss_pred Cc-----eeeecccH-H-HHHH-hcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 RT-----QILYIADI-S-FVIM-YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 ~~-----~~~~~~~~-~-~i~~-~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
.. ..+..... + ..+. ...+.+|++||..|+|. |.++.++++..+ .++++++.+++....+. ...|.
T Consensus 155 ~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~---~~~Ga 229 (360)
T PLN02586 155 NLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAI---NRLGA 229 (360)
T ss_pred CCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHH---HhCCC
Confidence 11 11111110 0 1222 23457899999999987 888888999863 57888887765433221 12454
Q ss_pred CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 159 ~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+..+.. .+. ..+.... +.+|+||-... ....+..+.+.|+++|.++.+..
T Consensus 230 ~~vi~~--~~~--~~~~~~~-~~~D~vid~~g-~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 230 DSFLVS--TDP--EKMKAAI-GTMDYIIDTVS-AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred cEEEcC--CCH--HHHHhhc-CCCCEEEECCC-CHHHHHHHHHHhcCCcEEEEeCC
Confidence 321111 111 0111111 35899774443 33468889999999999998753
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-05 Score=74.52 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
.+.+.|..+. .|+..+.+.+..+|+|..||+|++....++.++. ...++|.|+++.....|+.|+-.+|+...+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 5677777766 4778888888889999999999999888888743 36799999999999999999999888633566
Q ss_pred EEecCCCCCCCC--cCCCCccEEEecCCCh------------------------------hhHHHHHHhcccCCcEEEEe
Q 021550 165 GVRDIQGQGFPD--EFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 165 ~~~D~~~~~~~~--~~~~~~D~V~~d~~~~------------------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+|....+... ...+.||.|+.++|-. +.+++++...|+|||+..++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 677665443331 1225799998776621 46789999999998877766
Q ss_pred cCCH
Q 021550 213 SPCI 216 (311)
Q Consensus 213 ~~~~ 216 (311)
.|..
T Consensus 326 l~~g 329 (489)
T COG0286 326 LPDG 329 (489)
T ss_pred ecCC
Confidence 5543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=71.11 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=72.8
Q ss_pred CCEEEEEcccccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHh-----c----------------C--
Q 021550 109 GCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER-----T----------------G-- 157 (311)
Q Consensus 109 g~~VLdiG~G~G~----~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~-----~----------------g-- 157 (311)
.-+|+-+||++|- +++.+.+..+ ...+|++.|++...++.|+.-.-. . +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4689999999994 5555556553 257899999999999999861100 0 1
Q ss_pred -----CCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 -----~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+...|.|...|+....+.. +.||+||+ |.+....++...+..|+|||.|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~---~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFL---GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCcccc---CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1234667777777544322 78999984 566777899999999999999985
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.3e-05 Score=64.91 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=87.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V 185 (311)
..-+||||.||.|...+.++..... ...|...|+++..++..++.++..|+.+.++|.++|+.+. .+.. .....+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~-l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA-LDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc-cCCCCCEE
Confidence 4568999999999988888777532 2688999999999999999999999999779999999762 1221 11346777
Q ss_pred Eec-----CCChh---hHHHHHHhcccCCcEEEEe-cCCHHHHHHHHHHHhh
Q 021550 186 FLD-----LPQPW---LAIPSAKKMLKQDGILCSF-SPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d-----~~~~~---~~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~l~~ 228 (311)
++. .++.. ..+..+..++.|||+++.- .|...|++-+...|..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 642 23322 4678889999999999842 2344555555555543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-05 Score=61.16 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+...|+|+|||-|+++..++..+ .+..+|+++|.++..++.+.++....+ ...++.+...+..... .. .
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SS---D 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-cc---C
Confidence 3677899999999999999999833 357899999999999999999888776 4344666665554211 12 4
Q ss_pred CccEEE-ecC--CChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 181 LADSIF-LDL--PQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 181 ~~D~V~-~d~--~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..++++ ++. .-...+++.+.+ ++..+++.+||-
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 456655 221 222234555444 777777777763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-06 Score=71.48 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCEEEEEcccccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHH--------------HHh-----cC---
Q 021550 108 PGCLVLESGTGSGS----LTTSLARAVA---P-TGHVYTFDFHEQRAASARED--------------FER-----TG--- 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~----~~~~la~~~~---~-~~~v~~vD~~~~~~~~a~~~--------------~~~-----~g--- 157 (311)
+.-+|+.+||++|- +++.+.+... + ..+|+|.|+|+.+++.|++- ..+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44689999999995 3333334221 1 35899999999999999871 000 01
Q ss_pred -----CCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 -----~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+.|.|...|+.+...+. +.||+|++ +.+....+++.+.+.|+|||+|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~---~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPF---GRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCccc---CCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1245889999988512222 78999985 334456789999999999999995
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=61.69 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEEecCC--------------ChhhHHHH
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDLP--------------QPWLAIPS 198 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~--------------~~~~~l~~ 198 (311)
+|+++|+.+++++.+++++...+..++++++..+-.. ..+++ +.+|++++|.. ....+++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 6999999999999999999999988889998876543 22332 48999998643 12368999
Q ss_pred HHhcccCCcEEEEec
Q 021550 199 AKKMLKQDGILCSFS 213 (311)
Q Consensus 199 ~~~~LkpgG~lv~~~ 213 (311)
+++.|+|||.+++..
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999987643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=71.98 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec-CCC--CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQG--QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D-~~~--~~~~~~ 177 (311)
..+.+.++.+||..|+|+ |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ... ..+..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~- 251 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTG- 251 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcC-
Confidence 566788999999999998 889999999873 356999999999988887642 21 112222221 111 01111
Q ss_pred CCCCccEEEecC--------------------CChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDL--------------------PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~--------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.. +++...+..+.+.|+++|.++.+..
T Consensus 252 -~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 252 -GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred -CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 13689876433 2234578999999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=67.28 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCC--EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc------C--CCCcEEEEEec
Q 021550 99 FVIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------G--VSSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g--~~~~v~~~~~D 168 (311)
.+++.+++++|. +|||+-+|+|..+..++.+ +++|+++|.++......+.++... + +..+++++++|
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 478888999988 9999999999999999987 567999999999999999988874 2 12458888888
Q ss_pred CCCCCCCCcCCCCccEEEecCCChh
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~ 193 (311)
... .+.. ....||+|++|++-|.
T Consensus 154 a~~-~L~~-~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLT-ALTD-ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHH-HHhh-CCCCCcEEEECCCCCC
Confidence 864 2221 1147999999998554
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=72.78 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec---CCCCCCCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD---IQGQGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D---~~~~~~~~ 176 (311)
+...++.+|++||..|+|+ |..+..+++..+ .+|++++.+++.++.+++ .|.+..+.....+ +.+ .+..
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~-~~~~ 231 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKK-LIKA 231 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHH-HHHh
Confidence 3446788999999999987 888888898863 579999999998888764 3543222221111 110 0000
Q ss_pred cC-CCCcc----EEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EF-SGLAD----SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~-~~~~D----~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ...+| .|+ +.......+..+.+.|++||+++++..
T Consensus 232 ~t~~~g~d~~~d~v~-d~~g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 232 FAKARGLRSTGWKIF-ECSGSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred hcccCCCCCCcCEEE-ECCCChHHHHHHHHHHhcCCeEEEECc
Confidence 00 12454 544 544444578888999999999998754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=71.18 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=88.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHhcCC-CCcEEEEEecCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAA-------SAREDFERTGV-SSFVTVGVRDIQG 171 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~g~-~~~v~~~~~D~~~ 171 (311)
+...+.++||+.|+|--.|||.+....+.. ++.|+|.||+-.++. ..+.|++..|. +.-+.++.+|...
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 556777999999999999999998887776 689999999887766 34667887774 3346788899987
Q ss_pred CCCCCcCCCCccEEEecCCCh--------------------------------------hhHHHHHHhcccCCcEEEEec
Q 021550 172 QGFPDEFSGLADSIFLDLPQP--------------------------------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~--------------------------------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.++... ..||+|++|+|-- ...|.-..+.|.-||+++++.
T Consensus 277 ~~~rsn--~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 277 PPLRSN--LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cchhhc--ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 666542 6899999998811 135677788999999999988
Q ss_pred CCH
Q 021550 214 PCI 216 (311)
Q Consensus 214 ~~~ 216 (311)
|+.
T Consensus 355 p~~ 357 (421)
T KOG2671|consen 355 PTI 357 (421)
T ss_pred Cch
Confidence 854
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=63.76 Aligned_cols=106 Identities=25% Similarity=0.225 Sum_probs=75.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...=..-.|++|||+|+|+|..++..++. +...|++.|+.+......+-|.+.+++. +.+...|... .+
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~--- 140 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP--- 140 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC---
Confidence 333334456899999999999999888877 5789999999999999889898888854 7788777652 43
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccC-CcEEEEecCCH
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQ-DGILCSFSPCI 216 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~ 216 (311)
..||+++. +-+.....++ ....|+. |-.+++..|..
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 67999874 2233334555 5555554 44555566644
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=67.89 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=70.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC--CCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI--QGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~~ 177 (311)
.....+.+|++||..|+|+ |..+..+++..+ ..+|++++.+++..+.+++ .|.+..+.....+. .. .+.+.
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~-~~~~~ 250 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSE-VIREM 250 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHH-HHHHH
Confidence 3456788999999999887 778888888863 3479999999998888754 35433222211110 10 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecCC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~~ 215 (311)
..+.+|+|+-.... ...+..+.+.|+++ |.++.+...
T Consensus 251 ~~~g~d~vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 251 TGGGVDYSFECTGN-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred hCCCCCEEEECCCC-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 11468997744433 34778889999886 999887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.2e-05 Score=69.23 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=70.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
+....++++++||..|+|+ |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.....+.... .+..
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~- 232 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTG- 232 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhC-
Confidence 4556788999999999886 788888888863 3479999999988877764 45432122111111110 0111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-.... ...+..+.+.|+++|+++.+..
T Consensus 233 -~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 233 -GKGVDAVIIAGGG-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred -CCCCcEEEECCCC-HHHHHHHHHHhhcCCEEEEecc
Confidence 1469987754443 3478899999999999987653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=71.12 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=88.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
....|+..++++|||-|.....++.. ....+++++.++..+..+.......++.+.-.++..|+...++++ ..||
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd 180 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFD 180 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccC
Confidence 35678889999999999999988877 368999999999988888887777777776777888888777887 7888
Q ss_pred EEE-----ecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 184 SIF-----LDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~-----~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+- .+.|.++.++.++.++++|||.++++
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 874 36789999999999999999999974
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=65.80 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCC-C-CCC-cC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ-G-FPD-EF 178 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~-~-~~~-~~ 178 (311)
+.++..++|+|||+|.-+..|++.+.+ ...++++|+|.++++.+.+++.....+. .+.-+.+|..+. . ++. ..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 457779999999999999888887732 3578999999999999999887333433 244478887641 1 111 01
Q ss_pred CCCccEEEe------cCC--ChhhHHHHHHh-cccCCcEEEEe
Q 021550 179 SGLADSIFL------DLP--QPWLAIPSAKK-MLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~------d~~--~~~~~l~~~~~-~LkpgG~lv~~ 212 (311)
.....+++. |.+ ....+|.++.+ .|+||+.|++-
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 123455553 222 22357888888 99999999873
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=66.62 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.-..++||||+-|.+..++... +-.+++.+|.|-.|++.++..- ..++ ......+|-+...+.+ .++|+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~e---ns~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKE---NSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccc---cchhhhhh
Confidence 3458999999999999888776 3578999999999999887531 1122 1445566766566776 89999997
Q ss_pred cCCChh-----hHHHHHHhcccCCcEEEE
Q 021550 188 DLPQPW-----LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d~~~~~-----~~l~~~~~~LkpgG~lv~ 211 (311)
.+...| ..+.++...|||.|.|+.
T Consensus 144 SlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 665544 578899999999999875
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-05 Score=67.70 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=67.8
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+.+.++++||..|+|. |..+..+++.+ +.+++.++.+++..+.+++ .|.+..+.....+... .+... .
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-~~~~~--~ 227 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAE-ALQEL--G 227 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHH-HHHhc--C
Confidence 445788999999999876 77888888886 3579999999888777754 3543212211112111 11111 3
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-... ....+..+.+.|+++|.++.+..
T Consensus 228 ~~d~vi~~~g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 228 GAKLILATAP-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCEEEECCC-chHHHHHHHHHcccCCEEEEEec
Confidence 4898774332 23478889999999999998754
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.6e-05 Score=62.69 Aligned_cols=108 Identities=22% Similarity=0.252 Sum_probs=67.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHH--HHHHhcCCCCcEEEEEecCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAR--EDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~----~~~a~--~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
++...+++||++|+|+=.|.|.+|..++..+++.+.|+++-..+.. .+..+ ....+....| ++.+..+.....
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccC
Confidence 5677889999999999999999999999999999999987433220 01011 1111112222 444333333222
Q ss_pred CCCcCCCCccEEEe------------cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 174 FPDEFSGLADSIFL------------DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 174 ~~~~~~~~~D~V~~------------d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. +..|+++. +......+...+.+.|||||.+++.
T Consensus 119 -~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 -AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred -CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 22 34455432 2223345678899999999999875
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00028 Score=64.46 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+....++.+|++||..|+|. |..+.++++...+...+++++.+++..+.+++ .|.+..+.....+.. ..+...
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~-~~~~~~- 225 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEPLG-EALEEK- 225 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHH-HHHhcC-
Confidence 34566788999999999876 66777777753234568889999988877764 354322222221211 111110
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+||-.... ...+..+.+.|+++|.++.++.
T Consensus 226 g~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 226 GIKPTLIIDAACH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1235675543332 3468888999999999998754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.5e-05 Score=59.41 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=50.8
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
++||+|||.|.++..+++.. +..+++++|.++.+++.+++++..++..+ +.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 48999999999999998874 56799999999999999999999888765 8888776653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=70.73 Aligned_cols=94 Identities=23% Similarity=0.385 Sum_probs=60.9
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTF---DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+||+|||+|.++.+|+.+ +..+.++ |..+..++.|.+ .|+...+.+ .+.- ..+++. ..||+|-+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----RGvpa~~~~-~~s~-rLPfp~---~~fDmvHc 187 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----RGVPAMIGV-LGSQ-RLPFPS---NAFDMVHC 187 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----cCcchhhhh-hccc-cccCCc---cchhhhhc
Confidence 5799999999999999877 3333333 333445555543 365442221 1222 277887 89999853
Q ss_pred c-CCChh-----hHHHHHHhcccCCcEEEEecCCH
Q 021550 188 D-LPQPW-----LAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 188 d-~~~~~-----~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
. .-.+| -+|-++-++|+|||+++...|..
T Consensus 188 src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 188 SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 2 12222 36788999999999999877754
|
; GO: 0008168 methyltransferase activity |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0002 Score=65.56 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~ 177 (311)
.....+.++.+||..|+|. |..+.++++..+ ..++++++.++.....+++ .|.+..+.....+... ..+..
T Consensus 159 ~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~- 232 (345)
T cd08286 159 VLNGKVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD- 232 (345)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC-
Confidence 3455678899999988876 677777888863 3678889998887776653 3543323322222111 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 233 -~~~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 233 -GRGVDVVIEAVGI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred -CCCCCEEEECCCC-HHHHHHHHHhccCCcEEEEecc
Confidence 1469987754433 3367888899999999998754
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=65.53 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=69.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...++.++.+||..|+|. |..+.++++..+ ..+|++++.+++..+.+++ .|.+..+.....+..+ .+.+...
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~-~l~~~~~ 238 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVA-EVRKLTG 238 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHH-HHHHHhC
Confidence 4567788999999999876 778888888862 3389999999988877754 3443212212222111 0111111
Q ss_pred -CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 -GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 -~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-.... ...++.+.+.|+++|.++.+..
T Consensus 239 ~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGV-QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHhccCCCEEEEEcc
Confidence 359997754433 3467889999999999998754
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00026 Score=63.91 Aligned_cols=87 Identities=22% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.++||+||++|+++..++++ +.+|+++|..+ +... +. .+.+|.....|.... .+. .+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~----L~---~~~~V~h~~~d~fr~-~p~--~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQS----LM---DTGQVEHLRADGFKF-RPP--RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHh----hh---CCCCEEEEeccCccc-CCC--CCCCCEE
Confidence 468999999999999999999988 46999999654 2111 11 123488888877532 221 2789999
Q ss_pred EecCCC-hhhHHHHHHhcccCC
Q 021550 186 FLDLPQ-PWLAIPSAKKMLKQD 206 (311)
Q Consensus 186 ~~d~~~-~~~~l~~~~~~Lkpg 206 (311)
++|+.. |....+.+.+.|..|
T Consensus 275 VcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEecccCHHHHHHHHHHHHhcC
Confidence 999864 556677778888766
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00079 Score=59.88 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=65.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
...+|||+|+|+|..+.++...++.-..++++|.|+.+++.++..+....... ......+......+- ...|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWRRVLYRDFLPF---PPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhhhhhhcccccC---CCCcEEEE
Confidence 34699999999999887777777545789999999999999988765432111 110111111111111 23499874
Q ss_pred -----cCCC--hhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 188 -----DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 188 -----d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
.+++ ...+++.+.+.+.+ .|+++.|....
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 2333 23466667666655 88888776543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=67.06 Aligned_cols=103 Identities=22% Similarity=0.223 Sum_probs=78.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCC-CCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGF-PDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~-~~~~~~~~D~V 185 (311)
.+-+|||.=+|+|.=++..+..+.+..+|+.-|+++++++..++|++.+++.+ .+++.+.|+...-. .. ..||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~---~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQ---ERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHST---T-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhcc---ccCCEE
Confidence 34589999999999999999887666899999999999999999999999987 68999999874211 23 789999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
=+|+- .|..+|+.+.+.++.||.|++-.
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 88874 56679999999999999999843
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=64.25 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=66.2
Q ss_pred HhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC-
Q 021550 102 MYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD- 176 (311)
Q Consensus 102 ~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~- 176 (311)
..+.. .++.+||..|+|. |..+..+++.++ ..+|++++.+++..+.+++ .|.+..+.....+... ..+..
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHH
Confidence 33443 4899999999876 778888888863 2389999988887766643 4543212211111100 00100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 245 ~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 245 TGGRGADVVIEASGH-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred hCCCCCcEEEECCCC-hHHHHHHHHHhccCCEEEEEcC
Confidence 011469987754332 3467888999999999998764
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=64.23 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=67.1
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
..+.++.+||..|+|+ |..+..+++.. +.+|++++.+++..+.+++. +....+.....+... .+.....+.+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~-~~~~~~~~~~ 202 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEE-ELRLTGGGGA 202 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHH-HHHHhcCCCC
Confidence 3348899999999996 77778888875 37899999998877776542 322211111111100 0000011569
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
|+++...... ..+..+.+.|+++|.++.++..
T Consensus 203 d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVGGP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCCCH-HHHHHHHHhcccCCEEEEEccC
Confidence 9988665542 4678889999999999987643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00044 Score=57.93 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~ 184 (311)
.+|.+||++|-|.|.....+.++ +-.+-+.+|..++.++..++.. ..-..+|.+..+-.++ ..+++ +.||.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~d---~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLPD---KHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhccccc---cCcce
Confidence 68899999999999988877776 3456667899999988777652 1223346666654432 34555 77999
Q ss_pred EEecCC-----ChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDLP-----QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~-----~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+.|.- +.|.+.+.+.++|||+|.+-.+-
T Consensus 173 I~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 173 IYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 998764 45678899999999999997653
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00022 Score=60.02 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=63.3
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
+|.|+..+-+++--.+.+.|+|+|.-.|+.+...|. .+++.++|+++|++-..... +..+.+....+|+++++|.
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCC
Confidence 455555443433323458999999999988877654 44577999999996443221 1122344556799999998
Q ss_pred CCCC----CCCc-CCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 170 QGQG----FPDE-FSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 170 ~~~~----~~~~-~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.. .... ......+|+.|.. .-.+.|+....++++|+++++...
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 7511 1110 0134557787765 334577888999999999998544
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0019 Score=54.47 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=100.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+.+.++.|+||--+++..++.+. ++...+++.|+++..++.|.+++..+++..++++..+|.. ..+... ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~--d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE--DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc--CCcCEEE
Confidence 45566999999999999999987 5778999999999999999999999999998999999986 455441 4789887
Q ss_pred e-cCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC--ceeeEEEeeceeeEEeeee
Q 021550 187 L-DLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF--TDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 187 ~-d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f--~~~~~~e~~~r~~~v~~~~ 249 (311)
+ .+... ..+|++..+.|+.=-+++ ..|. .+...+.++|.. +| .....+|...+-|++..-+
T Consensus 91 IAGMGG~lI~~ILee~~~~l~~~~rlI-LQPn-~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 91 IAGMGGTLIREILEEGKEKLKGVERLI-LQPN-IHTYELREWLSANSYEIKAETILEEDGKIYEILVVE 157 (226)
T ss_pred EeCCcHHHHHHHHHHhhhhhcCcceEE-ECCC-CCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEe
Confidence 5 44433 246666666666443454 4554 345677788877 34 5555566656667777543
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00048 Score=62.98 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=65.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.++...+.+++ .+....+.....+... .....
T Consensus 161 ~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~- 234 (347)
T cd05278 161 ELAGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGG- 234 (347)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCC-
Confidence 445678899999988764 777788888863 2478888888877766654 2332212222211111 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ....+..+.+.|+++|+++.++
T Consensus 235 --~~~d~vld~~g-~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 --RGVDCVIEAVG-FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred --CCCcEEEEccC-CHHHHHHHHHHhhcCCEEEEEc
Confidence 46898774333 2247888999999999998765
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00038 Score=64.80 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR-AASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+|++||..|+|. |.++.++|+.++ .+|++++.+++. .+.++ ..|.+..+... +. ..+.+.. +.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~----~lGa~~~i~~~--~~--~~v~~~~-~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAID----RLGADSFLVTT--DS--QKMKEAV-GTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHH----hCCCcEEEcCc--CH--HHHHHhh-CCCcE
Confidence 5899999999987 888888999873 578888877553 44443 34543211111 10 0111111 34898
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+-.... ...+..+.+.|+++|.++.+..
T Consensus 246 vid~~G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTVSA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECCCc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 7754433 3367888999999999998753
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00076 Score=62.30 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..+|++||..|+|+ |.++.++++..+ .+++.++.+++....+.+ ..|.+..+. ..+. ..+.... ..+|+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~---~~Ga~~~i~--~~~~--~~~~~~~-~~~D~ 247 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALE---HLGADDYLV--SSDA--AEMQEAA-DSLDY 247 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH---hcCCcEEec--CCCh--HHHHHhc-CCCcE
Confidence 46899999999887 888888998863 578888888776554433 245432111 1111 1111111 35898
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||-.... ...+..+.+.|+++|+++.+..
T Consensus 248 vid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 248 IIDTVPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EEECCCc-hHHHHHHHHHhccCCEEEEECC
Confidence 7754442 2477888999999999998754
|
|
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00067 Score=63.10 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=64.8
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec--CCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--IQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D--~~~~~~~~~ 177 (311)
....+++++++||..|+|. |..+..+++..+ ..+|+.++.+++..+.+++ .|.+..+.....+ .. ..+...
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~-~~v~~~ 256 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAG-ASRIIAVDINKDKFAKAKE----LGATECINPQDYKKPIQ-EVLTEM 256 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEecccccchhHH-HHHHHH
Confidence 4557788999999998876 777777788753 2389999999988877753 3543222222111 11 001000
Q ss_pred CCCCccEEEecCCChhhHHHHHHh-cccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~-~LkpgG~lv~~~~ 214 (311)
..+.+|+|+-.... ...+..+.. .++++|.++.+..
T Consensus 257 ~~~~~d~vld~~g~-~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 257 TDGGVDFSFEVIGR-LDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred hCCCCeEEEECCCC-cHHHHHHHHhhccCCCEEEEEcc
Confidence 11458986643333 335566444 4568999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00061 Score=63.60 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe---cCCCCCCCCcCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR---DIQGQGFPDEFS 179 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~---D~~~~~~~~~~~ 179 (311)
.++.+|++||..|+|. |..++.+++..+ ..+|++++.+++..+.+++ .|.+..+..... +...........
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCC
Confidence 5788999999998877 777788888863 3379999998887666654 354321221111 111000000011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-....+...+..+.+.|+++|+++.++.
T Consensus 274 ~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECC
Confidence 46998875544444578899999999999998754
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=64.88 Aligned_cols=105 Identities=23% Similarity=0.236 Sum_probs=67.7
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++++||..|+|. |..+..+++.. +.+|++++.+++..+.+++ .+....+.....+.. ..+......
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~ 231 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK-DKKAAGLGG 231 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH-HHHHHhcCC
Confidence 445688899999988875 88888889886 4679999999988877754 344221111100100 000001115
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+|+-.. .....+..+.+.|+++|.++.++.
T Consensus 232 ~~D~vid~~-g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFV-GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECC-CCHHHHHHHHHHhhcCCEEEEECC
Confidence 699866433 334478889999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00048 Score=63.83 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=68.7
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++++||..|+|. |.++..+++..+ ...+++++.+++..+.+++ .+....+.....+... .+......
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~~ 253 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVA-AIREITGG 253 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCC
Confidence 456678899999999876 788888888863 3479999999988777654 3432211111111110 01000115
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 254 ~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 254 GVDYALDTTGV-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCcEEEECCCC-cHHHHHHHHHhccCCEEEEeCc
Confidence 68997754433 2367899999999999998764
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=60.55 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=69.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
....++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|....+..... +... .+...
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~-~l~~~ 249 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVE-VLTEM 249 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHH-HHHHH
Confidence 4556788999999999876 778888888863 3458889988888877753 344332222222 1111 00000
Q ss_pred CCCCccEEEecCCChhhHHHHHHhccc-CCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lk-pgG~lv~~~~ 214 (311)
..+.+|+|+-... ....+..+.+.|+ ++|.++.+..
T Consensus 250 ~~~~~d~vid~~g-~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 250 TDGGVDYAFEVIG-SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred hCCCCcEEEECCC-CHHHHHHHHHHhccCCCEEEEEec
Confidence 1146899774433 2347888899999 9999997654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0004 Score=60.87 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=92.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCC--CCCCCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQG--QGFPDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~--~~~~~~~~~ 180 (311)
+...++||.+|.|-|......+++ .--..+..+|++...++..++.+... |. ...+.++.+|... ....+ +
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~---~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE---N 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc---C
Confidence 455689999999999988877777 33478899999999999999887653 22 2458888888753 22333 7
Q ss_pred CccEEEecCCChh---------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 181 LADSIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 181 ~~D~V~~d~~~~~---------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
.||+|+.|..+|. .+++.+.+.||++|+++....|..-..++.+.+++
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHH
Confidence 8999998876653 46788999999999999998888877777777766
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00049 Score=63.67 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE--EecCCCC--CCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG--VRDIQGQ--GFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~--~~D~~~~--~~~~ 176 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.+. ..+.... .+..
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhh
Confidence 566788999999998875 778888888863 3468889998887776654 3543312111 1111100 0100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+.+|+|+-.... ...+..+.+.|+++|.++.+..
T Consensus 250 ~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 250 AMGGGIDVSFDCVGF-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred hcCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 111468987654443 3478999999999999998764
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=57.29 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=68.4
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE-EecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~-~~D~~~~~~~~~ 177 (311)
.+...++.||.+|-.+|.|. |.++..+|+++ +.+|+++|.+...-+.|-+ ..|.+.-+.+. ..|..+ .+...
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~-~~~~~ 246 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMK-AIMKT 246 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHH-HHHHh
Confidence 45667788999999999887 99999999998 5899999998755444433 45655423332 222221 11111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..|.|. +. ....++.+..+||++|.+++.
T Consensus 247 ~dg~~~~v~-~~--a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 247 TDGGIDTVS-NL--AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred hcCcceeee-ec--cccchHHHHHHhhcCCEEEEE
Confidence 113444433 22 233678899999999999975
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00056 Score=58.38 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=70.9
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCCCc
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV-TVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v-~~~~~D~~~~~~~~~ 177 (311)
+++..++ .+|..+||+|+.||++|..++++ ++.+|+++|..-..+..--+ .+.++ .....|+.. ..++.
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~-l~~~~ 140 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY-LTPED 140 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh-CCHHH
Confidence 4455554 45788999999999999999988 57999999998765443221 12223 334445543 12222
Q ss_pred CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..|++++|.. ....+|..+..++++++.++..
T Consensus 141 ~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 141 FTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEE
Confidence 2246789988764 5556889999999999887653
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0027 Score=49.91 Aligned_cols=98 Identities=31% Similarity=0.308 Sum_probs=65.0
Q ss_pred EEEEcccccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEEec
Q 021550 112 VLESGTGSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLD 188 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~~d 188 (311)
++|+|||+|..+ .++... +. ..++++|+++.++..++......+... +.+...|... ..+... ..+|++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS--ASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC--CceeEEeee
Confidence 999999999987 444442 22 388899999999888555433211111 5677777653 333320 268988432
Q ss_pred CC----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 189 LP----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. .....+..+.+.++|+|.+++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22 136789999999999999887544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=58.39 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=48.8
Q ss_pred CCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCc--CCCCccE
Q 021550 109 GCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (311)
Q Consensus 109 g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~--~~~~~D~ 184 (311)
.-++||||+|.-. ..+..++.. +-+++|.|+++..++.|++++..+ ++.++|+++...-....+... ..+.||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 3479999999854 344444443 579999999999999999999999 898889998764332222211 1257999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
.++++|
T Consensus 181 tmCNPP 186 (299)
T PF05971_consen 181 TMCNPP 186 (299)
T ss_dssp EEE---
T ss_pred EecCCc
Confidence 999887
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00053 Score=63.01 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=66.5
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
....+.++++||..|+|. |..+.++++.++ ...+++++.+++..+.+.+ .|....+.....+... .+... ..
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~~ 241 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVE-KIKELTGG 241 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCC
Confidence 566788999999888876 778888888874 4568889988887766553 3442211111111110 01100 01
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..... ..+..+.+.|+++|.++.++.
T Consensus 242 ~~vdvvld~~g~~-~~~~~~~~~l~~~G~~v~~g~ 275 (350)
T cd08256 242 YGCDIYIEATGHP-SAVEQGLNMIRKLGRFVEFSV 275 (350)
T ss_pred CCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEcc
Confidence 3589877544432 367888999999999998753
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=59.95 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=70.8
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe--
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-- 187 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-- 187 (311)
...+|+|.|.|..+..++..+ .+|-+++++...+..++.++. .| |+.+.+|.... .|. -|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~-----~daI~mkW 244 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK-----GDAIWMKW 244 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC-----cCeEEEEe
Confidence 789999999999999999864 458889998888877777654 44 66778888754 554 468874
Q ss_pred ---cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 188 ---DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 ---d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|++|. ..+|.++++.|+|||.+++..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 55544 378999999999999999853
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=63.03 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCCCEEEEEcccccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---------------------------
Q 021550 107 VPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------------------- 158 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------------------- 158 (311)
..|.++||+|||+-..- +.+++. ...|+..|+.+...+..++.++..+.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45789999999984432 222222 36899999999988877776544211
Q ss_pred -CCcEEEEEecCCC-CCCCC--cCCCCccEEEec---------CCChhhHHHHHHhcccCCcEEEEe
Q 021550 159 -SSFVTVGVRDIQG-QGFPD--EFSGLADSIFLD---------LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 159 -~~~v~~~~~D~~~-~~~~~--~~~~~~D~V~~d---------~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...-.++..|+.. .++.. ..+..||+|+.. ......++.++.++|||||.|++.
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0112367788875 22332 122359998742 223346899999999999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=61.16 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCC----CCCCc-
Q 021550 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ----GFPDE- 177 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~----~~~~~- 177 (311)
+..++++|+.+|+|. |..++..++.+| +.|+++|.+++.++.+++ .|... .++....+.... .+.+.
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhH
Confidence 356899999999998 889999999974 489999999999998886 34321 011111110000 00000
Q ss_pred --------C--CCCccEEEecCC-----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 --------F--SGLADSIFLDLP-----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 --------~--~~~~D~V~~d~~-----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. ...+|+||-... .|..+.+++.+.+||||.++.+..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 035899986443 233335999999999999987643
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=56.73 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=68.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC------------------------------
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG------------------------------ 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------------------------------ 157 (311)
...+||.-|||-|.++..+|.+ +..+.+.|.|--|+-..+-.+....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3568999999999999999998 5799999999888654443222100
Q ss_pred ---------CCCcEEEEEecCCCCCCCCcCCCCccEEE----ecCC-ChhhHHHHHHhcccCCcEEEEecC
Q 021550 158 ---------VSSFVTVGVRDIQGQGFPDEFSGLADSIF----LDLP-QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 158 ---------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~----~d~~-~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...++....+|+.+...++...+.||+|+ +|.. +-.++|+.+.++|||||..+=++|
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GP 203 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGP 203 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCC
Confidence 01123344444443111111125899886 4543 356789999999999998887666
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0046 Score=55.89 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...++.++.+||..|+|. |..+..+++.+ +.++++++.+++..+.+++ .|....+ +... ....
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~~-----~~~~-~~~~-- 212 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARR----LGVETVL-----PDEA-ESEG-- 212 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEe-----Cccc-cccC--
Confidence 34566788999999998876 77777888886 3569999999988887775 3443211 1111 1122
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ....+..+.+.|+++|.++.+.
T Consensus 213 -~~~d~vid~~g-~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 213 -GGFDVVVEATG-SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -CCCCEEEECCC-ChHHHHHHHHHhhcCCEEEEEc
Confidence 56999764433 3346788889999999998754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0034 Score=57.40 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=66.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~ 179 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.....+... .+.. ...
T Consensus 162 ~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~-~i~~~~~~ 235 (345)
T cd08287 162 VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALARE----FGATDIVAERGEEAVA-RVRELTGG 235 (345)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCceEecCCcccHHH-HHHHhcCC
Confidence 356778899999988876 778888888863 3468999988876666553 3442212211111110 0100 011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-... ....+..+.+.|+++|.++.++.
T Consensus 236 ~~~d~il~~~g-~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 236 VGADAVLECVG-TQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred CCCCEEEECCC-CHHHHHHHHHhhccCCEEEEecc
Confidence 46898764333 33478899999999999987754
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0026 Score=58.18 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=67.6
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+|. |..+..+++.. +.+|++++.+++..+.+++ .|.+..+.... .+... .+.....
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~-~~~~~~~ 231 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAA-AVRDLTG 231 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHH-HHHHHhC
Confidence 456678899999999875 77778888886 4689999988888777743 35433222221 12111 0110011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 232 ~~~d~vi~~~g~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 232 GGAHVSVDALGI-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred CCCCEEEEcCCC-HHHHHHHHHHhhcCCEEEEeCC
Confidence 368987754432 3467888999999999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0046 Score=56.46 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=65.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
+......++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .|... +.....+.. ..+... .
T Consensus 160 ~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~-~~l~~~~~ 232 (344)
T cd08284 160 AKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAA----LGAEP-INFEDAEPV-ERVREATE 232 (344)
T ss_pred hHhcCCccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----hCCeE-EecCCcCHH-HHHHHHhC
Confidence 3446678899999998775 667777888753 2478888888777666554 34311 111111111 001000 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...+|+++-.... ...+..+.+.|+++|.++.+...
T Consensus 233 ~~~~dvvid~~~~-~~~~~~~~~~l~~~g~~v~~g~~ 268 (344)
T cd08284 233 GRGADVVLEAVGG-AAALDLAFDLVRPGGVISSVGVH 268 (344)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHhcccCCEEEEECcC
Confidence 1468987654433 34788899999999999987643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=58.39 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=66.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
.....+.++.+||..|+|. |..+..+++..+ ...|++++.+++..+.+++ .+....+.....+.... .+..
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~~- 248 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLTD- 248 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHcC-
Confidence 3456778999999998865 777788888863 3358899888887776643 34322111111111100 1111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ....+..+.+.|+++|+++.++.
T Consensus 249 -~~~vd~vld~~~-~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 249 -GRGADYAFEAVG-RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred -CCCCCEEEEcCC-ChHHHHHHHHHhhcCCeEEEEec
Confidence 146898664333 23477889999999999988753
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0026 Score=58.18 Aligned_cols=104 Identities=23% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC---CC---CC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI---QG---QG 173 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~---~~---~~ 173 (311)
+....+.++.+||..|+|. |..+..+++.++ ...|++++.+++..+.+++ .+.+..+.....+. .. ..
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~ 229 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL 229 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH
Confidence 4667889999999988876 778888888863 2338888888887776654 24332122211111 00 11
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
... ..+|+|+-.... ...+..+.+.|+++|.++.++
T Consensus 230 ~~~---~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGG---KGPDVVIECTGA-ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCC---CCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence 121 459997754443 237888999999999999775
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=55.05 Aligned_cols=116 Identities=24% Similarity=0.221 Sum_probs=76.8
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD- 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d- 188 (311)
-++|||||-+........ +--.|+.+|+++.- -.+.+.|+.+.+++....+.||+|.+.
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH----------------PGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCCCC----------------CCceeeccccCCCCCCcccceeEEEEEE
Confidence 589999998766543322 23469999997621 335678888766764444789998653
Q ss_pred ----CCCh---hhHHHHHHhcccCCcE-----EEEecCCH--H-----HHHHHHHHHhh-cCceeeEEEeeceeeEE
Q 021550 189 ----LPQP---WLAIPSAKKMLKQDGI-----LCSFSPCI--E-----QVQRSCESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 189 ----~~~~---~~~l~~~~~~LkpgG~-----lv~~~~~~--~-----~~~~~~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
.|++ ++.+..+.++|+|+|. ++++.|.. + ....+...|.. ||..++.-+.-.=.|-+
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l 189 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWL 189 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEE
Confidence 4554 4789999999999999 87776632 1 23344555555 88877765554333333
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0064 Score=55.43 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=65.1
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+...++.+||..|+|. |..+..+++.++ ..++++++.+++..+.+++ .+.+..+.....+.. .+.. ..+
T Consensus 159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~~vi~~~~~~~~--~~~~-~~~ 230 (339)
T cd08232 159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGADETVNLARDPLA--AYAA-DKG 230 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCCEEEcCCchhhh--hhhc-cCC
Confidence 334434899999988876 778888888863 2378999998887776554 243221111111111 1111 014
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ...++.+.+.|+++|.++.+..
T Consensus 231 ~vd~vld~~g~-~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 231 DFDVVFEASGA-PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred CccEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 58997754432 3368889999999999998753
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0062 Score=55.49 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=68.4
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
+....+.++.+||..|+|. |..+..+++.+ +.+|+++..+++..+.+++ .+.+..+.....+... .....
T Consensus 152 ~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 152 VRRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDG 225 (337)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCC
Confidence 3566788999999998875 77888889886 4789999888887776643 2332212222212111 01121
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 226 ---~~vd~vld~~g~-~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 226 ---EGADVVIDATGN-PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ---CCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEcC
Confidence 458997754432 3467888999999999987753
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0044 Score=54.26 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=77.9
Q ss_pred CEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCC--C---c--C
Q 021550 110 CLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFP--D---E--F 178 (311)
Q Consensus 110 ~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~--~---~--~ 178 (311)
...||+|||- -..+..+++...|+++|+-+|.+|-.+..++..+....- ....++.+|+.+. .+. + . .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4799999994 457888999999999999999999999999988765432 2378999999751 111 0 0 0
Q ss_pred CCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh-----cCceeeEEEeecee
Q 021550 179 SGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL-----NFTDIRTFEILLRT 242 (311)
Q Consensus 179 ~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~-----~f~~~~~~e~~~r~ 242 (311)
...+=++++ |..++..++..+.+.|.||.+|++...+. +....+...+.+ .++..+.++.+...
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g 228 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDG 228 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCC
Confidence 022223322 33467889999999999999999864433 233444444443 14444444445555
Q ss_pred eEEee
Q 021550 243 YEIRQ 247 (311)
Q Consensus 243 ~~v~~ 247 (311)
|++..
T Consensus 229 ~elve 233 (267)
T PF04672_consen 229 LELVE 233 (267)
T ss_dssp SEE-T
T ss_pred CccCC
Confidence 55543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00076 Score=63.12 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~~~~D~ 184 (311)
..++-+|||.=+++|.-++..+..+.+-..|++.|.++..++..++|++.++..+.++..+.|+...-+.. .....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 45677999999999999999999997778999999999999999999999988888888888886421111 01157999
Q ss_pred EEecCC-ChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDLP-QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~-~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|=+|+- .+..+|+.+.+.++.||.+++-
T Consensus 187 IDLDPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 187 IDLDPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred EecCCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 988864 5667999999999999999984
|
|
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=58.38 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce---
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ--- 90 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~--- 90 (311)
.+++||+|+... .+.|+.|.+|+.|...+++-. ..+|.. ..+.+- |+..|... ...++....
T Consensus 75 ~~~~Gd~V~~~~--------~~~~~~c~~~~~~~~~~~~~~-~~~~~~---~~g~~~~~~~v~~~~--~~~~p~~~~~~~ 140 (325)
T cd08264 75 GVKKGDRVVVYN--------RVFDGTCDMCLSGNEMLCRNG-GIIGVV---SNGGYAEYIVVPEKN--LFKIPDSISDEL 140 (325)
T ss_pred CCCCCCEEEECC--------CcCCCCChhhcCCCccccCcc-ceeecc---CCCceeeEEEcCHHH--ceeCCCCCCHHH
Confidence 368899998765 345788888888877666531 111110 112221 33333221 111121110
Q ss_pred ---eeec-ccHHHHHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 91 ---ILYI-ADISFVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 91 ---~~~~-~~~~~i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
.... ......+..+++.++.+||..|+ |. |..+..+++..+ .+++++..+ +.+ ...|....+..
T Consensus 141 ~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~~----~~~----~~~g~~~~~~~ 210 (325)
T cd08264 141 AASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSRK----DWL----KEFGADEVVDY 210 (325)
T ss_pred hhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeHH----HHH----HHhCCCeeecc
Confidence 0000 01112334477889999999997 55 888888888863 567777521 222 23343221111
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.. ..+.... +.+|+|+-.... ..+..+.+.|+++|.++.+..
T Consensus 211 --~~~~-~~l~~~~-~~~d~vl~~~g~--~~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 211 --DEVE-EKVKEIT-KMADVVINSLGS--SFWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred --hHHH-HHHHHHh-CCCCEEEECCCH--HHHHHHHHhhccCCEEEEEec
Confidence 1110 1111111 358997754433 478999999999999997653
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.005 Score=56.49 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..++++||..|+|+ |..+..+++..+ ..+|+.++.+++..+.+++ .|....+.....+.. ..+.....+.+|+
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~~d~ 246 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAA-KRIIKAAGGGVDA 246 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHH-HHHHHHhCCCCcE
Confidence 44789999998876 778888888863 3478899988888777753 343211111110110 0011111136899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++-..+. ...+..+.+.|+++|.++.++.
T Consensus 247 vid~~g~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 247 VIDFVNN-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEECCCC-HHHHHHHHHHhhcCCeEEEECC
Confidence 7744433 3478899999999999997643
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0084 Score=55.71 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+....+.+|++||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .|. ..+.....+... .+.....
T Consensus 169 ~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~-~i~~~~~ 241 (375)
T cd08282 169 LELAGVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGDPVE-QILGLEP 241 (375)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCcccHHH-HHHHhhC
Confidence 3556778999999998886 778888888863 3478889999888777664 342 111111111110 0111111
Q ss_pred CCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|+++-..... ...+..+.+.|+++|.++.+.
T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 3589877543322 235888999999999997654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0049 Score=55.73 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=63.9
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
....+.++.+||..|.+. |..+..++... +.+++.++.+++..+.++. .+....+.....+... .....
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHhCC
Confidence 456678899999999864 66666677764 4678999988887766643 2332111111111100 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++..... ..+..+.+.|+++|.++.++.
T Consensus 234 ---~~~d~~i~~~g~--~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 234 ---RGVDVVVEHVGA--ATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred ---CCCcEEEECCcH--HHHHHHHHHhhcCCEEEEEec
Confidence 468998865554 357888899999999987653
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=56.93 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
..+|||.=+|+|.=++..+...+ ..+|+.-|+||++.+.+++|+..+...+ ......|+...-... ...||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~--~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL--HRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc--CCCccEEecC
Confidence 68999999999999999988864 3489999999999999999999884444 555567775322221 1679998777
Q ss_pred CC-ChhhHHHHHHhcccCCcEEEEe
Q 021550 189 LP-QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 189 ~~-~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+- .|..+++.+.+.++.+|.+.+-
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEE
Confidence 63 5667999999999999999873
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0042 Score=56.40 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=69.4
Q ss_pred HHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
....++.+|++||..|. |. |..+.++++.. +.+|++++.+++..+.+++ .|.+..+..... +.. ..+...
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~-~~~~~~ 203 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLE-ETLKKA 203 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHH-HHHHHh
Confidence 35677899999999994 43 88889999986 3689999999888777753 455332222111 111 001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.+|+|+-.... ..+..+.+.|+++|+++.++.
T Consensus 204 ~~~gvdvv~d~~G~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 204 SPDGYDCYFDNVGG--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCCeEEEEECCCH--HHHHHHHHHhCcCcEEEEecc
Confidence 11469997744443 256889999999999998764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0034 Score=57.76 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=69.7
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
....+.+|++||..|+ |. |.++.++++.. +.+|++++.+++..+.+++. .|.+..+..... +... .+....
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDA-ALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHH-HHHHHC
Confidence 4467899999999998 54 88999999986 36899999998887766532 354432222111 2211 111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+|+-.... ..+..+.+.|+++|+++++..
T Consensus 226 ~~gvD~v~d~vG~--~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 226 PEGIDIYFDNVGG--DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHhccCCEEEEECc
Confidence 1468987744443 478899999999999998754
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00039 Score=61.03 Aligned_cols=127 Identities=22% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCC-CCCCEEEEEcccccHHHH-HHHHHhCCCcEEEEEeCCHH
Q 021550 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTT-SLARAVAPTGHVYTFDFHEQ 144 (311)
Q Consensus 67 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~g~~VLdiG~G~G~~~~-~la~~~~~~~~v~~vD~~~~ 144 (311)
++|..|...|+.-++... .+.-..+.++. ..+..|+|+-+|-|++++ .+..+ ++..|+++|.+|.
T Consensus 163 ~NGI~~~~d~t~~MFS~G-----------N~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~ 229 (351)
T KOG1227|consen 163 QNGITQIWDPTKTMFSRG-----------NIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPW 229 (351)
T ss_pred hcCeEEEechhhhhhhcC-----------cHHHHHHhhhcccccchhhhhhcccceEEeehhhcc--CccEEEEEecCHH
Confidence 456777777776543211 11112222332 245789999999999999 55554 5789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-CCChhhHHHHHHhcccCCcE-EE
Q 021550 145 RAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-LPQPWLAIPSAKKMLKQDGI-LC 210 (311)
Q Consensus 145 ~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-~~~~~~~l~~~~~~LkpgG~-lv 210 (311)
.++..++++..+++.++..++.+|-+. .-+. ...|.|.+. .|...+-...+.++|+|.|- ++
T Consensus 230 svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~---~~AdrVnLGLlPSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 230 SVEALRRNAEANNVMDRCRITEGDNRN-PKPR---LRADRVNLGLLPSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred HHHHHHHHHHhcchHHHHHhhhccccc-cCcc---ccchheeeccccccccchHHHHHHhhhcCCcEE
Confidence 999999999998887777777888774 2333 678988875 46666667778888987544 44
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0029 Score=57.56 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=79.2
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+.-+++.+........++..+|.+|+|.+|.+|.-|.+++..+.+.++++++|.+.++.+..++.+...|... ++...+
T Consensus 193 g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~ 271 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEG 271 (413)
T ss_pred CceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccc
Confidence 3345555555568889999999999999999999999999999888999999999999999999999889876 677788
Q ss_pred cCCCCCCCCcCCCCccEEEecCC
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
|+.....++.. ..+-.+++|++
T Consensus 272 df~~t~~~~~~-~~v~~iL~Dps 293 (413)
T KOG2360|consen 272 DFLNTATPEKF-RDVTYILVDPS 293 (413)
T ss_pred cccCCCCcccc-cceeEEEeCCC
Confidence 88753222211 33555666654
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0066 Score=55.49 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~ 180 (311)
....++.+||..|+|. |..+..+++..+ ...|++++.+++..+.+++ .+....+.....++.+. .+.. ..
T Consensus 157 ~~~~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~--~~ 229 (340)
T TIGR00692 157 AGPISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTD--GE 229 (340)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcC--CC
Confidence 3457889998887764 677777888763 2248888888877776654 34322122211221110 1111 14
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.+|+++-.... ...+..+.+.|+++|.++.++..
T Consensus 230 ~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 230 GVDVFLEMSGA-PKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred CCCEEEECCCC-HHHHHHHHHhhcCCCEEEEEccC
Confidence 68997754332 34688889999999999987653
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.007 Score=55.11 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=68.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEF 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~ 178 (311)
+....+.++.+||..|+|+ |..+..+++... +.++++++.+++..+.+++ .|.+..+.... .+.. ..+....
T Consensus 155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~v~~~~ 228 (338)
T PRK09422 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVA-KIIQEKT 228 (338)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHH-HHHHHhc
Confidence 3567789999999999765 777778888631 4689999999998888753 35432111111 1100 1111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|.++.+.... ..+..+.+.|+++|.++.++
T Consensus 229 -~~~d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 -GGAHAAVVTAVAK-AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred -CCCcEEEEeCCCH-HHHHHHHHhccCCCEEEEEe
Confidence 2478666665443 46899999999999999775
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0072 Score=55.06 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCC
Q 021550 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~ 181 (311)
.+.++.+||..|+|+ |..+..+++..+ ..+|++++.+++..+.+++ .|.+..+... .+... ..+.. ...
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~i~~~~~--~~~ 235 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGADHVLNAS-DDVVEEVRELTG--GRG 235 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCcEEEcCC-ccHHHHHHHHhC--CCC
Confidence 467889999999776 667777888763 2688999888887766543 3442211111 11100 00111 136
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 236 ~dvvld~~g~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 236 ADAVIDFVGS-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred CCEEEEcCCC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 8997755443 3468888999999999998753
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0063 Score=52.35 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHhcCCCCCC--EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---hcCC-----CCcEEEEEec
Q 021550 99 FVIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE---RTGV-----SSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~g~-----~~~v~~~~~D 168 (311)
.++..++++++. +|||.-+|-|.-+..++.. +++|+++|.||-.....+.-+. .... ..+++++++|
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 477888888875 8999999999999988864 4799999999987665554332 2111 1369999999
Q ss_pred CCCCCCCCcCCCCccEEEecC
Q 021550 169 IQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~ 189 (311)
..+ .+. ....+||+|++|+
T Consensus 141 ~~~-~L~-~~~~s~DVVY~DP 159 (234)
T PF04445_consen 141 ALE-YLR-QPDNSFDVVYFDP 159 (234)
T ss_dssp CCC-HCC-CHSS--SEEEE--
T ss_pred HHH-HHh-hcCCCCCEEEECC
Confidence 875 222 1127899999986
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0097 Score=55.04 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=65.8
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
....+.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+.....+... .....
T Consensus 181 ~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~- 254 (367)
T cd08263 181 HAADVRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREITGG- 254 (367)
T ss_pred hcccCCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHhCC-
Confidence 334567899999888765 777788888763 3348889888887776643 3432211111111110 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-..+.. ..+..+.+.|+++|.++.++.
T Consensus 255 --~~~d~vld~vg~~-~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 255 --RGVDVVVEALGKP-ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred --CCCCEEEEeCCCH-HHHHHHHHHHhcCCEEEEEcc
Confidence 4699987554443 367889999999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0011 Score=53.12 Aligned_cols=129 Identities=22% Similarity=0.202 Sum_probs=82.9
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--cEEEEEecCCC-CCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQG-QGFP 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--~v~~~~~D~~~-~~~~ 175 (311)
++..-+...|.+|||+|.|- |..++.+|... +...|...|-+++.++..++....+.... ...+..-+... ....
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 55555566788999999996 66666666664 67899999999999988887655442211 01111111110 0011
Q ss_pred CcCCCCccEEEe-cCC----ChhhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhh-cCc
Q 021550 176 DEFSGLADSIFL-DLP----QPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NFT 231 (311)
Q Consensus 176 ~~~~~~~D~V~~-d~~----~~~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~-~f~ 231 (311)
+ ...||.|+. |.- .....+..+...|+|.|.-++++|-. +.++.++..... +|.
T Consensus 100 e--q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 100 E--QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred h--hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence 1 147999874 221 23457788899999999999999965 446666666655 543
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=55.06 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=64.1
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-----------
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ----------- 170 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~----------- 170 (311)
..+.++++||..|+ |+ |..+..+++.. +.+++.++.+++..+.+++ .|....+.....+..
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~~s~~~~~~~~~----~G~~~~i~~~~~~~~~~~~~~~~~~~ 262 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAA--GANPVAVVSSEEKAEYCRA----LGAEGVINRRDFDHWGVLPDVNSEAY 262 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccccccccccccchhh
Confidence 46788999999997 54 77888888886 4677888888888887764 343211111000000
Q ss_pred -----C-----CCCCCcCC-C-CccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 171 -----G-----QGFPDEFS-G-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 171 -----~-----~~~~~~~~-~-~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ..+.+... . .+|+|+ |.... ..+..+.+.|+++|.++.++
T Consensus 263 ~~~~~~~~~~~~~v~~l~~~~~g~d~vi-d~~g~-~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 263 TAWTKEARRFGKAIWDILGGREDPDIVF-EHPGR-ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred hhhhhccchHHHHHHHHhCCCCCCeEEE-ECCch-HhHHHHHHHhccCCEEEEEc
Confidence 0 00000011 2 589876 44333 46788999999999999875
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=53.31 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=65.5
Q ss_pred HhcCCCCCCEEEEEccc-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G-~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
..+.+.++.+||..|++ . |..+..+++.. +.+++.++.+++..+.+++. ...- +... +.. ..+...
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~-~~~~----~~~~--~~~-~~v~~~-- 223 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTSSESKAKIVSKY-ADYV----IVGS--KFS-EEVKKI-- 223 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHH-HHHh----cCch--hHH-HHHHhc--
Confidence 34578889999999993 3 88888899886 47899999988888877553 2111 1111 111 111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|.++.+..
T Consensus 224 ~~~d~~ld~~g~~--~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 224 GGADIVIETVGTP--TLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred CCCcEEEEcCChH--HHHHHHHHHhcCCEEEEEec
Confidence 2478877544432 57888999999999998754
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=52.44 Aligned_cols=101 Identities=24% Similarity=0.216 Sum_probs=66.2
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++.+||..|+|. |..+..+++.. +.+|+.++.+++..+.+++ .+....+.....+.. .. .. +
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~-~~---~ 224 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGADEVVDSGAELDE-QA-AA---G 224 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCcEEeccCCcchH-Hh-cc---C
Confidence 446788899999999885 77778888886 3689999999888777643 233221111111111 01 11 4
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 225 ~~d~vi~~~~~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 225 GADVILVTVVS-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCCEEEECCCc-HHHHHHHHHhcccCCEEEEECC
Confidence 68987754333 3467888999999999997753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0047 Score=52.38 Aligned_cols=107 Identities=18% Similarity=0.110 Sum_probs=69.9
Q ss_pred CEEEEEcccccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAP----T----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD 176 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~ 176 (311)
.+|+|+++.+|.++..|++.+.. . .+|+++|+.+- ..+.. |.-+++|+.... +..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHHH
Confidence 58999999999999999988743 1 23999999652 23444 777888987521 111
Q ss_pred cCCCCccEEEecCC-Ch---------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 177 EFSGLADSIFLDLP-QP---------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 177 ~~~~~~D~V~~d~~-~~---------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
..+++.|+|++|.. +- ..+|.-...+|+|||.||.-..-......+...|+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 12258999998753 11 135666778999999998633222333344444444
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0013 Score=57.50 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..|..++|+|||.|-.+.. .|...+++.|++...+..+++. |. .....+|+...++.+ .+||.++
T Consensus 44 ~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l~~p~~~---~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADALKLPFRE---ESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----CC---ceeehhhhhcCCCCC---Cccccch
Confidence 4488999999999976532 2567899999998888777641 21 256778888777777 7899876
Q ss_pred e-----cCC---ChhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 187 L-----DLP---QPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 187 ~-----d~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
. ++. ....+++++.+.|+|||...+|+-..++
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 3 222 2346899999999999998888765544
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0046 Score=58.27 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=67.5
Q ss_pred hcCCCCCCEEEEEc-ccc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhc----CCCCcEEEEEe----cCCC
Q 021550 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERT----GVSSFVTVGVR----DIQG 171 (311)
Q Consensus 103 ~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~----g~~~~v~~~~~----D~~~ 171 (311)
..++++|++||.+| +|+ |.++.++++..+ +..+|+++|.+++.++.+++..... |.. ..++.. +...
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHA 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHH
Confidence 45678999999997 565 888888888863 2348999999999999888742111 211 111111 1110
Q ss_pred CCCCCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+.+. ....+|+||.....+ ..+..+.+.++++|.++++
T Consensus 248 -~v~~~t~g~g~D~vid~~g~~-~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 -TLMELTGGQGFDDVFVFVPVP-ELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred -HHHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhccCCeEEEE
Confidence 01000 114699987655443 4788899999988877654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.019 Score=52.35 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC------CC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG------QG 173 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~------~~ 173 (311)
+....+.++++||..|+|. |..+..+++.++ ...+++++.+++..+.+++ .+....+.....+... ..
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~ 228 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALA----MGADIVVDPAADSPFAAWAAELAR 228 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEEcCCCcCHHHHHHHHHHH
Confidence 3556788999999998765 677778888864 3458888988888877764 3432111111111100 00
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.+|+++-.... ...+..+.+.|+++|.++.+..
T Consensus 229 ~~~---~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 229 AGG---PKPAVIFECVGA-PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred hCC---CCCCEEEECCCC-HHHHHHHHHHhccCCEEEEECC
Confidence 111 469987743333 2367888999999999998754
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=58.11 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDFHE---QRAASAR-----------EDFER-----TG 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~------~~-----~~~v~~vD~~~---~~~~~a~-----------~~~~~-----~g 157 (311)
+.-+|+|+|-|+|...+...+.+ .+ .-+++++|..| +-+..+. +.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999877776555 12 24788999644 2222221 21111 12
Q ss_pred C------CC--cEEEEEecCCCCCCCCcCCCCccEEEecCCCh------h--hHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 158 V------SS--FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 158 ~------~~--~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~------~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
+ .+ ++++..+|+.+ .++.. ...+|++|+|.-.| | +++..+.+.++|||.++.|+. ...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~----a~~ 210 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-LLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS----AGF 210 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-HHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh----HHH
Confidence 1 11 34566678763 23321 14699999996544 3 689999999999999998864 344
Q ss_pred HHHHHhh-cCc
Q 021550 222 SCESLRL-NFT 231 (311)
Q Consensus 222 ~~~~l~~-~f~ 231 (311)
+...|.. +|.
T Consensus 211 vr~~l~~~GF~ 221 (662)
T PRK01747 211 VRRGLQEAGFT 221 (662)
T ss_pred HHHHHHHcCCe
Confidence 4555555 563
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0079 Score=54.35 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.++++||.+|+|+ |.++.++++.++ ...|+++|.+++.++.|... .. + |.... .. ..+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~~---i-----~~~~~--~~---~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----EV---L-----DPEKD--PR---RDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----cc---c-----Chhhc--cC---CCCCEE
Confidence 4678999999987 889899998863 44577889988887766531 11 1 11111 11 468987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|-.... ...+..+.+.|+++|.++++..
T Consensus 205 id~~G~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 205 YDASGD-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred EECCCC-HHHHHHHHHhhhcCcEEEEEee
Confidence 754443 3468899999999999998764
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.027 Score=51.00 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=66.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+.+.++.+||..|+|. |..+..+++.. +.+|+.++.+++..+.+++ .|... +. +... ...
T Consensus 160 ~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~---~~--~~~~--~~~--- 223 (329)
T cd08298 160 LKLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARE----LGADW---AG--DSDD--LPP--- 223 (329)
T ss_pred HHhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHH----hCCcE---Ee--ccCc--cCC---
Confidence 3567788999999998876 66777788875 4789999888877766643 34321 11 1111 122
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++...+.. ..++.+.+.|+++|.++.+..
T Consensus 224 ~~vD~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 224 EPLDAAIIFAPVG-ALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcccEEEEcCCcH-HHHHHHHHHhhcCCEEEEEcC
Confidence 4689877543333 478999999999999998653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=52.22 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~ 180 (311)
....++.+||..|+|. |..+..+++..+ ..+|++++-+++..+.+++ .+.+..+.....+... ..... +
T Consensus 159 ~~~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~---~ 230 (341)
T cd05281 159 AGDVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDG---T 230 (341)
T ss_pred hcCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCC---C
Confidence 3456889999988776 778888888863 2378888877777766654 3432211111111110 01111 4
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 231 ~vd~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 231 GVDVVLEMSGN-PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCEEEECCCC-HHHHHHHHHHhccCCEEEEEcc
Confidence 68997755443 3467888999999999998754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0084 Score=51.87 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+..+|+|+|||-=-++...... .++..++++|++..+++.....+...+.. .++...|... ..+. ...|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~-~~~~---~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLS-DPPK---EPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTT-SHTT---SEESEE
T ss_pred CCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeec-cCCC---CCcchh
Confidence 455789999999998888776644 35679999999999999999998888765 6777788874 3343 678988
Q ss_pred Ee
Q 021550 186 FL 187 (311)
Q Consensus 186 ~~ 187 (311)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 75
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0087 Score=47.27 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++.++.-.+..+.+|+|+|-|...++.++. +....+++|+++-.+..++-..-+.|+.....|...|+-+..+.+
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d- 138 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD- 138 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc-
Confidence 34667777778789999999999999888887 356789999999999999888778888777888877775433332
Q ss_pred CCCCccEEEecCCChh-hHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPW-LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~-~~l~~~~~~LkpgG~lv~ 211 (311)
-.+-+ |+..+... ..-.++..-+..+..++.
T Consensus 139 --y~~vv-iFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 139 --YRNVV-IFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred --cceEE-EeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 22222 33333222 233445556667776664
|
|
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.017 Score=50.86 Aligned_cols=142 Identities=12% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 98 SFVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
.++.+..++.+|+.|+-=|+-+ |...+++++++| -+-+.+=.+..-++.+++.+...|.+..+ ....+....+.
T Consensus 150 rmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~G--iktinvVRdR~~ieel~~~Lk~lGA~~Vi--Teeel~~~~~~ 225 (354)
T KOG0025|consen 150 RMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALG--IKTINVVRDRPNIEELKKQLKSLGATEVI--TEEELRDRKMK 225 (354)
T ss_pred HHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhC--cceEEEeecCccHHHHHHHHHHcCCceEe--cHHHhcchhhh
Confidence 3456778899999999988876 778999999973 45555555566678888888888876411 11111110000
Q ss_pred C--cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 176 D--EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 176 ~--~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
. ......-+.+-+.... .-.++++.|..||.++.|..-..|...+-..+- -|.++..--.|+.+|.-.
T Consensus 226 k~~~~~~~prLalNcVGGk--sa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~l-IFKdl~~rGfWvt~W~~~ 295 (354)
T KOG0025|consen 226 KFKGDNPRPRLALNCVGGK--SATEIARYLERGGTMVTYGGMSKQPVTVPTSLL-IFKDLKLRGFWVTRWKKE 295 (354)
T ss_pred hhhccCCCceEEEeccCch--hHHHHHHHHhcCceEEEecCccCCCcccccchh-eeccceeeeeeeeehhhc
Confidence 0 0001233333333332 345788999999999999664433222211110 366666666666666544
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.071 Score=48.62 Aligned_cols=102 Identities=21% Similarity=0.266 Sum_probs=67.1
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+.+.++.+||..|+|. |..+..+++.. +.+++.++.+++..+.+++ .+.+..+.....+.. ... .
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~-~~~----~ 230 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALK----LGADEFIATKDPEAM-KKA----A 230 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhh-hhc----c
Confidence 3445678899999988876 77778888886 3589999998887777653 343321111111111 111 2
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-..+.. ..+..+.+.|+++|.++.++.
T Consensus 231 ~~~d~v~~~~g~~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 231 GSLDLIIDTVSAS-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCceEEEECCCCc-chHHHHHHHhcCCCEEEEEec
Confidence 5689988655443 357888999999999998754
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0017 Score=50.48 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=60.5
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC-CCccEEEecCCChhhHH
Q 021550 118 GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS-GLADSIFLDLPQPWLAI 196 (311)
Q Consensus 118 G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~-~~~D~V~~d~~~~~~~l 196 (311)
|.|.++..+++..+ .+|+++|.++..++.+++ .|....+.....|+.+ .+.+... ..+|+||-.... ...+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~-~i~~~~~~~~~d~vid~~g~-~~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVE-QIRELTGGRGVDVVIDCVGS-GDTL 72 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHH-HHHHHTTTSSEEEEEESSSS-HHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccc-ccccccccccceEEEEecCc-HHHH
Confidence 45889999999974 999999999999888875 4533211111111110 1111111 479997755553 4589
Q ss_pred HHHHhcccCCcEEEEecCCH
Q 021550 197 PSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 197 ~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.+.++|+++|.++++.-..
T Consensus 73 ~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHhccCCEEEEEEccC
Confidence 99999999999999886543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=44.70 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
+++ .+.+|+|||++-|..++.++-. ++.+|+++|.++...+..+++++.+.+-+ -..+- ..|+. .-+.||
T Consensus 25 idv-k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~D---K~v~~---~eW~~-~Y~~~D 94 (156)
T PHA01634 25 LNV-YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICD---KAVMK---GEWNG-EYEDVD 94 (156)
T ss_pred eee-cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeee---ceeec---ccccc-cCCCcc
Confidence 444 4689999999999999998876 68899999999999999999887654321 11111 12332 116799
Q ss_pred EEEecCCC
Q 021550 184 SIFLDLPQ 191 (311)
Q Consensus 184 ~V~~d~~~ 191 (311)
+.++|...
T Consensus 95 i~~iDCeG 102 (156)
T PHA01634 95 IFVMDCEG 102 (156)
T ss_pred eEEEEccc
Confidence 99888764
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0099 Score=53.79 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=68.4
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
...++.+|++||..|. |. |..+..+++.. +.+|++++.+++..+.+++ .|.+..+.....|... .+.....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~-~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEE-ALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHH-HHHHHCC
Confidence 5567899999999984 43 88888899986 4689999999888777764 4543322221122211 1111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+|+-... . ..+..+.+.|+++|.++.+.
T Consensus 210 ~gvd~vld~~g-~-~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 210 DGIDCYFDNVG-G-EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCcEEEEECCC-H-HHHHHHHHhhccCCEEEEEc
Confidence 46898764333 3 46789999999999999875
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.024 Score=53.25 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred HHHHhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.+++..++ .+|++|+.+|+|. |.....+++.++ ++|+.+|.++..++.|++ .|.. .. +.. ..+
T Consensus 191 ~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G~~----~~--~~~-e~v-- 255 (413)
T cd00401 191 GIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EGYE----VM--TME-EAV-- 255 (413)
T ss_pred HHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cCCE----Ec--cHH-HHH--
Confidence 35555554 6899999999999 878888888763 589999999998877764 3432 11 111 111
Q ss_pred cCCCCccEEEecCCChhhHHHHH-HhcccCCcEEEEecCC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSA-KKMLKQDGILCSFSPC 215 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~-~~~LkpgG~lv~~~~~ 215 (311)
..+|+||.....+ ..+... .+.+++||+++..+..
T Consensus 256 ---~~aDVVI~atG~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 256 ---KEGDIFVTTTGNK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---cCCCEEEECCCCH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3479987655544 466654 8999999999877643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=53.61 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=69.5
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
...++++|++||..|+ |. |..+.++++.. +.+|+++..+++..+.+++. .|.+..+..... +... .+....
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDA-ALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHH-HHHHhC
Confidence 4567899999999997 43 88888999986 46899999888887777652 354332221111 2211 111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ..+..+.+.|+++|.++.++.
T Consensus 219 ~~gvd~v~d~~g~--~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 219 PNGIDIYFDNVGG--KMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHhccCcEEEEecc
Confidence 1468997744333 578899999999999998753
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=53.82 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=69.2
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+++|++||..|..+ |.+++++++.++ +.++++--+++..+.++ ..|.+..+++...|+.+ ...+...
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~-~v~~~t~ 208 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLK----ELGADHVINYREEDFVE-QVRELTG 208 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHH-HHHHHcC
Confidence 446688999999999544 789999999973 26666666666555444 35665545555555442 1211111
Q ss_pred -CCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 180 -GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 180 -~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+|+|+-..... .+......|+++|.++.+...
T Consensus 209 g~gvDvv~D~vG~~--~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTVGGD--TFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECCCHH--HHHHHHHHhccCCEEEEEecC
Confidence 3699976443333 567789999999999987654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0058 Score=56.52 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=51.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.|||||+|+|.+++..++.. +-.|+++|.-..|.+.|++...++|..+.|+++.....
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 58999999999999888873 56799999999999999999999999888988876544
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=53.90 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=67.0
Q ss_pred HhcCCCCC--CEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 102 MYLELVPG--CLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g--~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
...++.++ ++||..|+ | .|..+.++++..+ ..+|++++.+++..+.+++. .|.+..+.....++.+ .+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~-~i~~~ 220 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAE-RLREL 220 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHH-HHHHH
Confidence 44567766 89999987 4 3888888999863 23799999998877776643 4543322211112111 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+|+-..... .+..+.+.|+++|+++.+.
T Consensus 221 ~~~gvd~vid~~g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 221 CPEGVDVYFDNVGGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCCCceEEEECCCcH--HHHHHHHHhccCCEEEEEe
Confidence 114699987544443 4688999999999999875
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.075 Score=44.90 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=77.9
Q ss_pred HHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEccccc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 80 LWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG----SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G----~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.|...++.......|...++|..++.-.....++++.++.| .+++..|.+ .-+++++.+-.+++.+...++.+..
T Consensus 13 AYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~ 91 (218)
T PF07279_consen 13 AYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGE 91 (218)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhh
Confidence 34444433333345666667766666566678899966543 233333333 2368999998888887777888877
Q ss_pred cCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhccc--CCcEEE
Q 021550 156 TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK--QDGILC 210 (311)
Q Consensus 156 ~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lk--pgG~lv 210 (311)
.+..+.++|+.++..+..++.. ..+|.+++|... .++...+++.++ |.|-++
T Consensus 92 ~~~~~~vEfvvg~~~e~~~~~~--~~iDF~vVDc~~-~d~~~~vl~~~~~~~~GaVV 145 (218)
T PF07279_consen 92 AGLSDVVEFVVGEAPEEVMPGL--KGIDFVVVDCKR-EDFAARVLRAAKLSPRGAVV 145 (218)
T ss_pred ccccccceEEecCCHHHHHhhc--cCCCEEEEeCCc-hhHHHHHHHHhccCCCceEE
Confidence 7877768999888543233332 569999998763 333334444443 345444
|
The function of this family is unknown. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.026 Score=48.85 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=73.6
Q ss_pred HHhcCCCCCCEEEEEcc--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCC
Q 021550 101 IMYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~ 176 (311)
-+..+++||+.||.-.+ |-|.+..++++.. +.++++.-...+..+.|+++ |....|.....|..+. .+..
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccC
Confidence 34567999999876543 4478888999886 57888888888888888865 6655577777777642 2221
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+..+|+++=.... ..+..-+..||++|.++.|.
T Consensus 213 --gKGVd~vyDsvG~--dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 213 --GKGVDAVYDSVGK--DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred --CCCceeeeccccc--hhhHHHHHHhccCceEEEec
Confidence 2568987633332 26778889999999999874
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.023 Score=53.54 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.|-. ++|.+|||.-.+...+-+. +...|+.+|+|+-.++....... .. .....+...|+....|++ ++||+|
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~-~~~~~~~~~d~~~l~fed---ESFdiV 118 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KE-RPEMQMVEMDMDQLVFED---ESFDIV 118 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cC-CcceEEEEecchhccCCC---cceeEE
Confidence 3445 9999999998888776665 46789999999999888776543 12 233788889998888888 888888
Q ss_pred Ee---------cCCChh------hHHHHHHhcccCCcEEEEe
Q 021550 186 FL---------DLPQPW------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~---------d~~~~~------~~l~~~~~~LkpgG~lv~~ 212 (311)
+. +..+.| ..+.++.++|++||+.+.+
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 73 222333 4578899999999996654
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.019 Score=52.41 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~ 174 (311)
.+..+.+.++.+||..|+|. |..++.+++.. +.+ ++++..+++..+.+++ .+....+.....+... ...
T Consensus 157 ~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~ 230 (343)
T cd08235 157 AQRKAGIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGADYTIDAAEEDLVEKVRELT 230 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEecCCccCHHHHHHHHh
Confidence 33455788999999998764 77778888885 345 8888888887776643 3432111111111100 011
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ..+|+|+-.... ...+..+.+.|+++|.++.+..
T Consensus 231 ~~---~~vd~vld~~~~-~~~~~~~~~~l~~~g~~v~~~~ 266 (343)
T cd08235 231 DG---RGADVVIVATGS-PEAQAQALELVRKGGRILFFGG 266 (343)
T ss_pred CC---cCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEec
Confidence 11 458997754442 2467888999999999998753
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.032 Score=50.93 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCc
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLA 182 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~ 182 (311)
..+|++||..|+|. |..+..+++..+ ..+|+.++.+++..+.+++ .|.+..+.....+.... .+.. ...+
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~--~~~~ 233 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGM--TEGF 233 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcC--CCCC
Confidence 35789999888876 778888888863 3368888888877766654 34432111111111110 1111 1468
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 234 d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 234 DVGLEMSGA-PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 987643433 3478889999999999998864
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=49.58 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.|..|+.+|-- -..++++ ...+-..+|..+|+++..+....+.+.+.|+.| ++....|+. .++|+...+.||+.+.
T Consensus 152 ~gK~I~vvGDD-DLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr-~plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLR-NPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEcCc-hhhHHHH-HhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhc-ccChHHHHhhCCeeec
Confidence 47789999933 2222322 222335799999999999999999999999877 999999998 7888766689999999
Q ss_pred cCCChhh----HHHHHHhcccCC---cEEEE
Q 021550 188 DLPQPWL----AIPSAKKMLKQD---GILCS 211 (311)
Q Consensus 188 d~~~~~~----~l~~~~~~Lkpg---G~lv~ 211 (311)
|+|.... ++..-...|+.- |++.+
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 9987654 444455667754 66654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.036 Score=53.35 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=64.0
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-----CC-------
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-----QG------- 173 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-----~~------- 173 (311)
.++.+|+.+|+|. |..+..+++.++ +.|+++|.+++.++.++. .|.. ++..|..+ ..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~----~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAE----FLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe----EEeccccccccccccceeecCH
Confidence 4678999999998 888888888874 579999999998877775 3432 22222110 00
Q ss_pred ---------CCCcCCCCccEEEecC-----CChhhHHHHHHhcccCCcEEEE
Q 021550 174 ---------FPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ---------~~~~~~~~~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+ ....+|+||... +.|.-+.+++.+.+|||+.++=
T Consensus 232 ~~~~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 232 EFIAAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111 014699998654 4555577888999999998773
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.081 Score=47.07 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=51.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+|+|+.||.|+++..+.+. +...++++|+++.+++..+.|+... +..+|+.+....+ ....+|+++.++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~-~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKD-FIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhh-cCCCCCEEEeCCC
Confidence 6899999999998887765 3456788999999999888875321 4456665422111 0156999998877
Q ss_pred Ch
Q 021550 191 QP 192 (311)
Q Consensus 191 ~~ 192 (311)
+.
T Consensus 72 Cq 73 (275)
T cd00315 72 CQ 73 (275)
T ss_pred Ch
Confidence 43
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.054 Score=48.75 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFD--FHEQRAASAREDFERTGVSSFVTVGVRDIQG---QG 173 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~ 173 (311)
+.....+.++.+||..|+|. |..+..+++.. +.+|+.+. -+++..+.+++ .|+.. +.....|... ..
T Consensus 156 l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~ 228 (306)
T cd08258 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEI 228 (306)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHH
Confidence 34556778899998877654 66777788886 35676653 34444444443 34322 1111112111 01
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
... ..+|.++-... ....+....+.|+++|.++.++..
T Consensus 229 ~~~---~~vd~vld~~g-~~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 229 TDG---DGADVVIECSG-AVPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred cCC---CCCCEEEECCC-ChHHHHHHHHHhhcCCEEEEEccc
Confidence 111 46899765433 334788889999999999977553
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.16 Score=47.58 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC----CC------
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG------ 171 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~----~~------ 171 (311)
..+.++.+||..|+ |. |..+..+++.. +.+++.++.+++..+.+++ .|....++....|. ..
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~~~~~~~ 258 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAG--GGNPVAVVSSPEKAEYCRE----LGAEAVIDRNDFGHWGRLPDLNTQAP 258 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCCEEecCCCcchhhcccccccccc
Confidence 56788999999997 44 77888888886 4677888888877766654 34332121110000 00
Q ss_pred -------CCC----CCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 172 -------QGF----PDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 -------~~~----~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+ ... ....+|+|+-... . ..+..+.+.|+++|.++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g-~-~~~~~~~~~l~~~G~~v~~g~ 311 (398)
T TIGR01751 259 KEWTKSFKRFGKRIRELTGGEDPDIVFEHPG-R-ATFPTSVFVCRRGGMVVICGG 311 (398)
T ss_pred chhhhcchhHHHHHHHHcCCCCceEEEECCc-H-HHHHHHHHhhccCCEEEEEcc
Confidence 000 000 0145898765444 2 468889999999999998754
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.037 Score=50.54 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=63.0
Q ss_pred HHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
+....+.++.+||..|+ |. |..+..+++.. +.++++++.+. ..+.++ ..|.. .+...+-.. ......
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRR--GAIVIAVAGAA-KEEAVR----ALGAD---TVILRDAPLLADAKAL 239 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCch-hhHHHH----hcCCe---EEEeCCCccHHHHHhh
Confidence 35567889999999998 44 77888888886 46688877554 444443 34542 111111000 000011
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+|+|+-.... ..+..+.+.|+++|.++.+..
T Consensus 240 ~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~ 274 (350)
T cd08274 240 GGEPVDVVADVVGG--PLFPDLLRLLRPGGRYVTAGA 274 (350)
T ss_pred CCCCCcEEEecCCH--HHHHHHHHHhccCCEEEEecc
Confidence 11469998754443 368889999999999987653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.11 Score=50.33 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=79.2
Q ss_pred eeeecccHHH-HHHhcCCC--CCCEEEEEcccccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcE
Q 021550 90 QILYIADISF-VIMYLELV--PGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVS-SFV 162 (311)
Q Consensus 90 ~~~~~~~~~~-i~~~~~~~--~g~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v 162 (311)
....|..+.. +...+... |+..|.|..||+|.+.......+. ....+++.|.++.+...++.|+..++.. +..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3445555443 44555543 678999999999998876555432 1246899999999999999998766653 223
Q ss_pred EEEEecCCCC-CCCCcCCCCccEEEecCCC------------------------------hhhHHHHHHhcccCCcEEEE
Q 021550 163 TVGVRDIQGQ-GFPDEFSGLADSIFLDLPQ------------------------------PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 163 ~~~~~D~~~~-~~~~~~~~~~D~V~~d~~~------------------------------~~~~l~~~~~~LkpgG~lv~ 211 (311)
....+|.... .+.. ...||.|+.++|. .+.++..+...|++||...+
T Consensus 276 ~~~~~dtl~~~d~~~--~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 276 NIINADTLTTKEWEN--ENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred CcccCCcCCCccccc--cccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 3334444321 1111 1458887766541 12467788889999998766
Q ss_pred ecC
Q 021550 212 FSP 214 (311)
Q Consensus 212 ~~~ 214 (311)
+.|
T Consensus 354 I~~ 356 (501)
T TIGR00497 354 VCF 356 (501)
T ss_pred Eec
Confidence 655
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0037 Score=52.20 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL- 187 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~- 187 (311)
..++||+|+|.|-.+..++..+ .+|++.|.|..|....++. +. +++.. . .+... .-++|+|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~y----nVl~~-~---ew~~t-~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----NY----NVLTE-I---EWLQT-DVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----CC----ceeee-h---hhhhc-CceeehHHHH
Confidence 3589999999999999988875 5799999999998776642 32 12111 1 11110 035788642
Q ss_pred ---c-CCChhhHHHHHHhcccC-CcEEEE
Q 021550 188 ---D-LPQPWLAIPSAKKMLKQ-DGILCS 211 (311)
Q Consensus 188 ---d-~~~~~~~l~~~~~~Lkp-gG~lv~ 211 (311)
| ..+|...|+.+..+|+| .|++++
T Consensus 177 NlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 177 NLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 2 34677899999999999 777665
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.024 Score=50.67 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.+|+.|||..+|||..+.+..+. +.+.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 78999999999999988766555 68999999999999999999754
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.03 Score=53.17 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=71.1
Q ss_pred CEEEEEcccccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..|+.+|+|-|-+.-..++ ......+++++|-+|.++...+. ......+++|+++..|++...-+. .+.|+++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~---eq~DI~V 444 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPR---EQADIIV 444 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCch---hhccchH
Confidence 3578899999987655443 33345789999999998887765 333456678999999998754333 6789987
Q ss_pred ecC-------CChhhHHHHHHhcccCCcEEE
Q 021550 187 LDL-------PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 187 ~d~-------~~~~~~l~~~~~~LkpgG~lv 210 (311)
+.+ .-..+.|..+.++|||.|+.+
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 522 223468999999999998765
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.19 Score=45.72 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=66.7
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
..+.+.++.+||..|+++ |..+..+++.. +.+|+.+..+++..+.+++ .+.+..+.....+... .+... .
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~ 231 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVE-AVKELTG 231 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHH-HHHHHhc
Confidence 345788999999999864 77888888886 4689999998887766642 3433211111111111 01100 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++.+... ...+..+.+.|+++|+++.++.
T Consensus 232 ~~~vd~vl~~~~~-~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 232 GGGAHAVVVTAVS-AAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred CCCCCEEEEcCCc-hHHHHHHHHHhhcCCEEEEecC
Confidence 1469997753433 2367888999999999998753
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.061 Score=48.53 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=62.1
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+. .|..+..+++.. +..++.+..+++..+.+++ .+... +...+-....+...
T Consensus 156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-- 224 (332)
T cd08259 156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVTRSPEKLKILKE----LGADY---VIDGSKFSEDVKKL-- 224 (332)
T ss_pred HHhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCcE---EEecHHHHHHHHhc--
Confidence 33678889999999863 377777777775 4688888887776655532 33321 11111010111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+...... .+..+.+.++++|.++.++.
T Consensus 225 ~~~d~v~~~~g~~--~~~~~~~~~~~~g~~v~~g~ 257 (332)
T cd08259 225 GGADVVIELVGSP--TIEESLRSLNKGGRLVLIGN 257 (332)
T ss_pred cCCCEEEECCChH--HHHHHHHHhhcCCEEEEEcC
Confidence 2589987654433 47788899999999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0082 Score=57.72 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--------CCCCc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--------GFPDE 177 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--------~~~~~ 177 (311)
+.++..|||+||.+|++....++.++.++-|+|+|+-|-. .+.+ +...+.|+... .+..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~-c~t~v~dIttd~cr~~l~k~l~t- 108 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPN-CDTLVEDITTDECRSKLRKILKT- 108 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCc-cchhhhhhhHHHHHHHHHHHHHh-
Confidence 6788899999999999999999998878889999996631 2223 33344444321 1111
Q ss_pred CCCCccEEEecCC----Chh------------hHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLP----QPW------------LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~----~~~------------~~l~~~~~~LkpgG~lv~ 211 (311)
.+.|+|++|.. ..| .++..+...|+.||.++.
T Consensus 109 --~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 109 --WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred --CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 35688887643 222 356677889999999875
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=48.54 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
++... -.+|+.|||.-||+|..+.++.+. +.+.+++|++++.++.|++
T Consensus 184 lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 184 LIKAS-TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHH-S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHhh-hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 44433 367999999999999988766655 5789999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.045 Score=47.24 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
-.+|+.|||.-||+|..+.+..+. +.+.+++|++++..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 368999999999999988776655 578999999999999999987653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.023 Score=53.48 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCC-CcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP-DEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~-~~~~~~~D 183 (311)
.+..+|.+|-|+|.+...+...+ |...+++++++|++++.|..++....-. +..+...|... .... ......||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 45679999999999998888776 6799999999999999999987543222 23344444332 0000 00114699
Q ss_pred EEEecCC--Ch------------hhHHHHHHhcccCCcEEEEe
Q 021550 184 SIFLDLP--QP------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~--~~------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
+++.|.. ++ ..++..+...|.|.|.+++-
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 9987542 11 24788899999999999875
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.034 Score=50.24 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=64.9
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~ 186 (311)
..++||+|.|+|.-..++-..+..-..++.+|.|+..-+.... +..+-..........|+.. ..++.. ..|++++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~lp~a--d~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLSLPAA--DLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccCCCcc--ceeehhh
Confidence 4679999999988776665555333556777877764443332 2222111112222233332 223321 4577766
Q ss_pred e-c----CCCh---hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh
Q 021550 187 L-D----LPQP---WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL 228 (311)
Q Consensus 187 ~-d----~~~~---~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~ 228 (311)
+ | ...+ ...++.++.++.|||.||+..+.. +-..+..+.+-+
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~ 244 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA 244 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence 3 1 1111 136899999999999999986643 334444444433
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=41.90 Aligned_cols=99 Identities=27% Similarity=0.221 Sum_probs=61.5
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHhcCCCCcEEE-EEecCCCCC-CCCcCCCCccEE
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTF--DFHEQRAAS---AREDFERTGVSSFVTV-GVRDIQGQG-FPDEFSGLADSI 185 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~g~~~~v~~-~~~D~~~~~-~~~~~~~~~D~V 185 (311)
|-+|-|.=.++..|++..+....+++. |..++..+. +.+++....... +.+ ...|+.... ........||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEE
Confidence 457888889999999997645666664 544443332 234544432222 222 334665411 111112689999
Q ss_pred EecCCChh------------------hHHHHHHhcccCCcEEEEe
Q 021550 186 FLDLPQPW------------------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~------------------~~l~~~~~~LkpgG~lv~~ 212 (311)
+.+.|..- .++..+.++|+++|.+.+-
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99887432 4788999999999998764
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.22 Score=43.84 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=67.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+....+.++.+||..|+|. |..+..+++..+ ..+|++++.+++..+.+++. |..+.+..... .....
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~----~~~~~--- 157 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----GPADPVAADTA----DEIGG--- 157 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----CCCccccccch----hhhcC---
Confidence 4467788999999999877 778888888864 22499999999888766642 31111110000 01122
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 158 ~~~d~vl~~~~~-~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 158 RGADVVIEASGS-PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCCCEEEEccCC-hHHHHHHHHHhcCCcEEEEEec
Confidence 468987754333 2367888999999999987753
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.049 Score=45.96 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhc-----------------------------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERT----------------------------- 156 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----------------------------- 156 (311)
..+-++.|-+||+|++.-.+.-.-++ -..|++.|+++++++.|++|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44458999999999987666544211 268999999999999999976432
Q ss_pred -------------CCCCcEEEEEecCCCC----CCCCcCCCCccEEEecCC----Chh----------hHHHHHHhcccC
Q 021550 157 -------------GVSSFVTVGVRDIQGQ----GFPDEFSGLADSIFLDLP----QPW----------LAIPSAKKMLKQ 205 (311)
Q Consensus 157 -------------g~~~~v~~~~~D~~~~----~~~~~~~~~~D~V~~d~~----~~~----------~~l~~~~~~Lkp 205 (311)
+... ..+...|+.+. ..+. ....|+|+.|.| ..| +.|+.+..+| |
T Consensus 130 sA~RL~~~l~~~g~~~p-~~~~~aDvf~~~~~~~~~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p 205 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEP-HAIFRADVFDPSPLAVLDA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-P 205 (246)
T ss_dssp HHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHhcCCCCc-hhheeecccCCchhhhhcc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-C
Confidence 1122 45666777641 0111 134799998887 223 5788999999 4
Q ss_pred CcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 206 DGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 206 gG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
...+++++.....+. ...|..++.+....|...+.
T Consensus 206 ~~sVV~v~~k~~Ki~------~~~~r~~~rlKvGkR~~~l~ 240 (246)
T PF11599_consen 206 ERSVVAVSDKGRKIP------HDRFRRLERLKVGKRQAALF 240 (246)
T ss_dssp TT-EEEEEESSSS---------TTS--SEEEEETTEEEEEE
T ss_pred CCcEEEEecCCcccc------cchhHHHHHHhccceEEEEE
Confidence 544444433222111 12466666666666665544
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.015 Score=53.74 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEEecCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQ 170 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~D~~ 170 (311)
.++|..|.|+.||.|-+++.++.. +++|++.|.++++++..+.|+..+.++.. +++...|+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 578999999999999999998887 59999999999999999999988887665 888887765
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=46.35 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc---------------------------
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF--------------------------- 161 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~--------------------------- 161 (311)
.-+||.-|||.|.++..++.. +-.+-+-|+|--|+-...=-+......+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 458999999999999999987 24445556665554322211100001111
Q ss_pred ------------EEEEEecCCCCCCCC-cCCCCccEEEe----cCC-ChhhHHHHHHhcccCCcEEEEecC
Q 021550 162 ------------VTVGVRDIQGQGFPD-EFSGLADSIFL----DLP-QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 ------------v~~~~~D~~~~~~~~-~~~~~~D~V~~----d~~-~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+.+ .+.. ...+.||+|+. |.. .-.++|+.+.+.|+|||..+-++|
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~e-vy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLE-VYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccccCCCCCCccccccceeE-EecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 1112233321 1111 01146898863 433 334688999999999999987665
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=45.25 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=66.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHhcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFH--------------------------EQRAASAREDFERTG 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~---~-~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~g 157 (311)
-...|+|+||--|..++.++..+ + +..+++++|.- ....+..++++...|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34589999999998776554433 2 34678888531 114555666666666
Q ss_pred C-CCcEEEEEecCCCCCCCCcCCCCccEEEecCC---ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 158 V-SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP---QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 158 ~-~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
+ .+++.++.+.+.+ .++......+-++.+|.. ....+|+.++..|.|||++++=........+.+..++
T Consensus 154 l~~~~v~~vkG~F~d-TLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~ 226 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPD-TLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR 226 (248)
T ss_dssp TSSTTEEEEES-HHH-HCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred CCcccEEEECCcchh-hhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence 4 3469999999863 344322245666666654 2346899999999999999974333333333333333
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=45.17 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHHhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++...+++|++|+..++. .|....++|+.. +++|+++=-+++.++.+.+. .|.+..++....|+.. .+.+.
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlk--G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~-~L~~a 215 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLK--GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQ-ALKEA 215 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhh--CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHH-HHHHH
Confidence 6677788999998887653 389999999984 69999999999988888763 5666667777766652 33332
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.+..+|+.|-|...+ .++.+...|++.++|.+
T Consensus 216 ~P~GIDvyfeNVGg~--v~DAv~~~ln~~aRi~~ 247 (340)
T COG2130 216 CPKGIDVYFENVGGE--VLDAVLPLLNLFARIPV 247 (340)
T ss_pred CCCCeEEEEEcCCch--HHHHHHHhhccccceee
Confidence 336789888777665 67778888888888775
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.12 Score=46.79 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=61.0
Q ss_pred hcCCCCCCEEEEE--cccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 103 YLELVPGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 103 ~~~~~~g~~VLdi--G~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
.... ++..+|-+ |+|. |..+.++++.+ +.++++++.+++..+.+++ .|.+..+.....+... .+... .
T Consensus 138 ~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~ 209 (324)
T cd08291 138 TARE-EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLE-DLKELIA 209 (324)
T ss_pred hhcc-CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHH-HHHHHhC
Confidence 3344 45555554 6665 77888888886 4689999999988877765 4543322211112111 01000 0
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-..... .+....+.|+++|+++.+..
T Consensus 210 ~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 210 KLNATIFFDAVGGG--LTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCCCcEEEECCCcH--HHHHHHHhhCCCCEEEEEEe
Confidence 14689877544432 35667888999999998753
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.17 Score=45.88 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=66.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~ 179 (311)
..+.+.++.+||..|+|. |..+..+++..+ ...++.++.+++..+.+++ .+.. .++..+-..... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcC
Confidence 567788999999998764 777777888752 2348889989888777643 3432 122111110000 00011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..+. ...+..+.+.|+++|.++.++.
T Consensus 225 ~~vd~v~~~~~~-~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFDVVIEATGV-PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCcEEEECCCC-hHHHHHHHHHHhcCCEEEEEec
Confidence 569998754432 3478888999999999987653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.32 Score=45.61 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHhcC-CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++..+ ...|++|+.+|+|. |......++.+ +.+|+++|.++.....|.. .|. .+. +.. ..+
T Consensus 185 i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~le-eal--- 248 (406)
T TIGR00936 185 ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TME-EAA--- 248 (406)
T ss_pred HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHH-HHH---
Confidence 444444 36799999999998 77777778776 4689999999876544432 232 111 221 112
Q ss_pred CCCCccEEEecCCChhhHHH-HHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFLDLPQPWLAIP-SAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~-~~~~~LkpgG~lv~~~~~ 215 (311)
...|+||..... ...+. .....+++|++++..+-.
T Consensus 249 --~~aDVVItaTG~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 249 --KIGDIFITATGN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred --hcCCEEEECCCC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 346998765544 44555 488899999999876553
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=38.12 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEEcccccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecC
Q 021550 112 VLESGTGSGSLTTSLARAVAPTG-HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDL 189 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~ 189 (311)
|+.+|+ |.++..+++.+...+ .|+.+|.+++.++.+++. + +.++.+|..+.. +....-..+|.|++..
T Consensus 1 vvI~G~--g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY--GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES---SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC--CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc
Confidence 344555 556666666554445 899999999998877642 3 668889988621 2111115689888877
Q ss_pred CChhhH--HHHHHhcccCCcEEEEecCCHHHHH
Q 021550 190 PQPWLA--IPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 190 ~~~~~~--l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
++.... +....+.+.|...+++.....+...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~ 103 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAE 103 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 766543 3345566778888887776655433
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.24 Score=47.15 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred HHHHhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.+++..++ -.|++|+.+|+|. |......++.+ +.+|+++|.++.....|.. .|.. +. +.. ..+
T Consensus 243 ~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~~----vv--~le-Eal-- 307 (477)
T PLN02494 243 GLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGYQ----VL--TLE-DVV-- 307 (477)
T ss_pred HHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCCe----ec--cHH-HHH--
Confidence 35555554 5789999999998 77777777776 3689999999876444432 2322 11 221 111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...|+|+........+.......||+||+|+..+-
T Consensus 308 ---~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 308 ---SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ---hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 34799887555443345888999999999997655
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.2 Score=45.60 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
.+..+.+.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+......... .....
T Consensus 151 ~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~- 224 (343)
T cd08236 151 AVRLAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTE- 224 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhC-
Confidence 34466788999999998776 778888888863 2348899888877666543 3432211111111000 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ....+..+.+.|+++|.++.++.
T Consensus 225 -~~~~d~vld~~g-~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 225 -GRGADLVIEAAG-SPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred -CCCCCEEEECCC-CHHHHHHHHHHhhcCCEEEEEcc
Confidence 135999775433 33467888999999999998763
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.37 Score=45.48 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCC-CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~-~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
++. .|++|+.+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +.. ..+ ..+
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~-eal-----~~a 268 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TME-EAA-----ELG 268 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHH-HHH-----hCC
Confidence 443 799999999998 77777777776 4689999999876544432 232 211 221 111 357
Q ss_pred cEEEecCCChhhHHH-HHHhcccCCcEEEEecCCH
Q 021550 183 DSIFLDLPQPWLAIP-SAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 183 D~V~~d~~~~~~~l~-~~~~~LkpgG~lv~~~~~~ 216 (311)
|+||.....+ ..+. .....+|+|++++......
T Consensus 269 DVVI~aTG~~-~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 269 DIFVTATGNK-DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CEEEECCCCH-HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 9987655443 4565 6889999999998765443
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.3 Score=43.33 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=65.6
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCc
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~ 177 (311)
....+.++.+||..|+ |. |..+..+++.+ +..+++++.+++..+.+++ .+....+.....+... ..+..
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~- 202 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREITG- 202 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHcC-
Confidence 3466788999999994 43 77888888886 4789999888887776643 3442211111111110 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+|+++-.... ..+..+.+.|+++|.++.++
T Consensus 203 -~~~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 203 -GRGVDVVYDGVGK--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred -CCCeeEEEECCCc--HhHHHHHHhhccCcEEEEEe
Confidence 1469998755444 36788899999999999764
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.28 Score=44.23 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=65.7
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+ |. |..+..+++.. +.++++++.++...+.+++. .+....+.....+... .+.....
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~v~~~~~ 212 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAE-ALKEAAP 212 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHH-HHHHhcc
Confidence 3456788999999984 43 77888888885 46899999888877766542 3432212221111110 0111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|+++-.... ..+..+.+.|+++|.++.++
T Consensus 213 ~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 213 DGIDVYFDNVGG--EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred CCceEEEEcchH--HHHHHHHHhcCCCceEEEEe
Confidence 468987744333 47888899999999998765
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.22 Score=45.82 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=78.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-CCcEEEE
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-SSFVTVG 165 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~g~-~~~v~~~ 165 (311)
+..+.-+.+.+++.+++...|+|.|-|.+..+++... ....-+|+|+.....+.|..+. ...|- .+.++.+
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3334457788899999999999999999998888764 4566778887665444443322 22343 3457888
Q ss_pred EecCCCCCCCCcCCCCccEEEecCC--Chh--hHHHHHHhcccCCcEEEEecC
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDLP--QPW--LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~~--~~~--~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++++.....-.......++||++-. +|. .-+.+++.-+++|-+++.-.|
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 8888752222222245788876421 222 234588889999999986433
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.5 Score=38.25 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=59.7
Q ss_pred HhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-----cCCCCcEEEEEecCCCCCCC
Q 021550 102 MYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-----TGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 102 ~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----~g~~~~v~~~~~D~~~~~~~ 175 (311)
...+.+ ...+|||+|+|+|..++.++... ...|...|... .++..+.+... ..+...+.+...+-......
T Consensus 79 ~~~g~~~~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~ 155 (248)
T KOG2793|consen 79 TLIGFKTKYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV 155 (248)
T ss_pred ccccccccceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH
Confidence 334444 46789999999998777777663 57777777643 33333333221 22221244444333321111
Q ss_pred CcCCCC-ccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 176 DEFSGL-ADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 176 ~~~~~~-~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...... +|+|+. +...+..++..++..|..++.+.+.
T Consensus 156 ~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 156 SFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred hhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 111133 788864 3445556778888888888854443
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.27 Score=44.16 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=64.1
Q ss_pred HHHhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
.+..+.+.+|.+||..|+ | .|..+..+++.+ +.+++.+.-+++..+.+++ .|....+.....+... .+..
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~ 203 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRDAGVAELRA----LGIGPVVSTEQPGWQD-KVREA 203 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHh----cCCCEEEcCCCchHHH-HHHHH
Confidence 345567889999999886 4 388888888886 3577777666665555543 2442211111111110 0000
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-....+ .+..+.+.|+++|.++.+..
T Consensus 204 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 204 AGGAPISVALDSVGGK--LAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred hCCCCCcEEEECCCCh--hHHHHHHhhcCCcEEEEEec
Confidence 0114699987544443 56888999999999997753
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.32 Score=43.92 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......+|+.+|||. |...+..+....+..+|..++.+++..+...+.+...+ +.+...+.. ..+
T Consensus 116 a~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~----~~~~~~~~~-~av---- 186 (304)
T PRK07340 116 AARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG----PTAEPLDGE-AIP---- 186 (304)
T ss_pred HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----CeeEECCHH-HHh----
Confidence 44556556678999999997 55544444444455789999999887776666654332 222222222 112
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
..+|+|+...+.+..++.. .++||-.+...+.......+
T Consensus 187 -~~aDiVitaT~s~~Pl~~~---~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 187 -EAVDLVVTATTSRTPVYPE---AARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred -hcCCEEEEccCCCCceeCc---cCCCCCEEEecCCCCCCccc
Confidence 4689999877766666653 37999988877655433333
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.36 Score=43.09 Aligned_cols=106 Identities=25% Similarity=0.208 Sum_probs=64.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-c
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~ 177 (311)
+....+.++.+||..|+|. |..+..+++.. +.+ ++.+..+++..+.+++ .+....+.....+.. ..+.. .
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~l~~~~ 194 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAA--GARRVIAIDRRPARLALARE----LGATEVVTDDSEAIV-ERVRELT 194 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCceEecCCCcCHH-HHHHHHc
Confidence 3466788999999998765 67777788886 355 8888888777664432 343221110001110 00100 0
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 195 ~~~~vd~vld~~g~-~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 195 GGAGADVVIEAVGH-QWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CCCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEcc
Confidence 01468997754332 3467888999999999998754
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.59 Score=41.70 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=66.2
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
...+.+|++||..|+ | .|..+.++++.. +.+|+++..+++..+.+++ .|... +-....+... .+... ..
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~-~i~~~-~~ 207 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKE----LGADE-VVIDDGAIAE-QLRAA-PG 207 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEecCccHHH-HHHHh-CC
Confidence 445788999999997 3 388888899886 4779999888887666643 45432 2111111111 01111 25
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ..+..+.+.|+++|.++.++.
T Consensus 208 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 208 GFDKVLELVGT--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred CceEEEECCCh--HHHHHHHHHhccCCEEEEEcc
Confidence 79998754443 368889999999999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.44 Score=42.78 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=67.1
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
+...+.+.++.+||..|+ |. |..+..+++.. +.++++++.+++..+.+++ .+....+.....+... .+..
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~ 206 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPD-QVREA 206 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHH-HHHHH
Confidence 345567889999999985 33 77888888886 4679999988887776643 3432211111111110 0100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-....+ ....+.+.|+++|.++.++.
T Consensus 207 ~~~~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 207 LGGGGVTVVLDGVGGA--IGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred cCCCCceEEEECCChH--hHHHHHHHhccCcEEEEEec
Confidence 0114699987554443 45888999999999997754
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.24 Score=42.71 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=45.7
Q ss_pred EEEEecCCC--CCCCCcCCCCccEEEecCCCh--------------------hhHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP--------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 163 ~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~--------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
++.++|..+ ..+++ +++|+||.|+|-. ...+.++.++|||||.++++.... +..
T Consensus 3 ~l~~gD~le~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-~~~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-RVD 78 (227)
T ss_pred eEEechHHHHHHhCCc---cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-cHH
Confidence 466777764 24565 7899999988742 146788999999999998765532 234
Q ss_pred HHHHHHhh-cCceee
Q 021550 221 RSCESLRL-NFTDIR 234 (311)
Q Consensus 221 ~~~~~l~~-~f~~~~ 234 (311)
.+...+++ +|.-..
T Consensus 79 ~~~~al~~~GF~l~~ 93 (227)
T PRK13699 79 RFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHCCCEEee
Confidence 45555555 665433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.24 Score=44.22 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEEEecCCC--CCCCCcCCCCccEEEecCCCh---------------------hhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP---------------------WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 162 v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~---------------------~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
..++++|+.+ ..+++ ++||+||.|+|-. ...+..+.++|||||.++++.... .
T Consensus 9 ~~i~~gD~~~~l~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~-~ 84 (284)
T PRK11524 9 KTIIHGDALTELKKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE-N 84 (284)
T ss_pred CEEEeccHHHHHHhccc---CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch-h
Confidence 4678888875 23554 7899999998821 247789999999999999875533 2
Q ss_pred HHHHHHHHhhcCc
Q 021550 219 VQRSCESLRLNFT 231 (311)
Q Consensus 219 ~~~~~~~l~~~f~ 231 (311)
+..+...++.+|.
T Consensus 85 ~~~~~~~~~~~f~ 97 (284)
T PRK11524 85 MPFIDLYCRKLFT 97 (284)
T ss_pred hhHHHHHHhcCcc
Confidence 3333344444553
|
|
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=93.17 E-value=1 Score=39.81 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=61.1
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
..+.++.+||..|+ |. |..+..+++.. +.+++.++.++ ..+.++ ..+....+.....+... .... ..
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~----~~g~~~~~~~~~~~~~~-~~~~---~~ 208 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLR----SLGADEVIDYTKGDFER-AAAP---GG 208 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHH----HcCCCEEEeCCCCchhh-ccCC---CC
Confidence 34788999999996 43 77777788875 46788777665 554443 23432211111111111 1111 46
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+++-..+.. .+..+.+.|+++|.++.++.
T Consensus 209 ~d~v~~~~~~~--~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 209 VDAVLDTVGGE--TLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred ceEEEECCchH--HHHHHHHHHhcCcEEEEEcC
Confidence 89988655554 67888999999999987654
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.83 Score=43.64 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|.+|+.+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. ++. ..+ ...|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~le-ell-----~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--TLE-DVV-----ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--cHH-HHH-----hcCCEE
Confidence 4689999999998 77777777765 4689999998776543332 232 221 221 111 357999
Q ss_pred EecCCChhhHH-HHHHhcccCCcEEEEecCC
Q 021550 186 FLDLPQPWLAI-PSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d~~~~~~~l-~~~~~~LkpgG~lv~~~~~ 215 (311)
+...... .++ ......||||++|+-.+-.
T Consensus 314 I~atGt~-~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 314 VTATGNK-DIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EECCCcc-cccCHHHHhccCCCcEEEEcCCC
Confidence 8876543 355 4888999999999976655
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.87 Score=45.09 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHH---HhcC-----CCCcEEEEEecCCCCCCCC---
Q 021550 111 LVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDF---ERTG-----VSSFVTVGVRDIQGQGFPD--- 176 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~---~~~g-----~~~~v~~~~~D~~~~~~~~--- 176 (311)
.|+.+|+|-|-+.-..+++. +-..+|+++|.++..+.....+. ..+. ..+.|+++..|++....++
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998776555443 33468999999977544444332 2221 1345999999998743321
Q ss_pred -----cCCCCccEEEecC----C---ChhhHHHHHHhcccC----CcE
Q 021550 177 -----EFSGLADSIFLDL----P---QPWLAIPSAKKMLKQ----DGI 208 (311)
Q Consensus 177 -----~~~~~~D~V~~d~----~---~~~~~l~~~~~~Lkp----gG~ 208 (311)
...+++|+||+.+ . -..+.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0113799998632 2 223678888888886 776
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.59 Score=42.16 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++++||..|+ |. |..+..+++.. +.+|+.+..+++..+.+++ .|.+..+.....+.. ..+.....
T Consensus 133 ~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~-~~~~~~~~ 205 (329)
T cd08250 133 EVGEMKSGETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLG-EVLKKEYP 205 (329)
T ss_pred HhcCCCCCCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHH-HHHHHhcC
Confidence 3456789999999985 43 77888888886 4678888888877666643 343221111111110 00100011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-.... ..+..+.+.|+++|.++.++.
T Consensus 206 ~~vd~v~~~~g~--~~~~~~~~~l~~~g~~v~~g~ 238 (329)
T cd08250 206 KGVDVVYESVGG--EMFDTCVDNLALKGRLIVIGF 238 (329)
T ss_pred CCCeEEEECCcH--HHHHHHHHHhccCCeEEEEec
Confidence 458987754443 478888999999999987643
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.56 Score=42.78 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......++.-+|||. |..-+..+..+.+-.+|..+|.+++..+...+.+...+.. +.. ..|.. ...
T Consensus 119 aa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~--v~~-~~~~~-eav---- 190 (325)
T TIGR02371 119 AAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP--VRA-ATDPR-EAV---- 190 (325)
T ss_pred HHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc--EEE-eCCHH-HHh----
Confidence 34556555668899999998 5543333333445688999999999887766665544421 222 22332 222
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
...|+|+...+....++. ...|+||-.+..++.......++-
T Consensus 191 -~~aDiVitaT~s~~P~~~--~~~l~~g~~v~~vGs~~p~~~Eld 232 (325)
T TIGR02371 191 -EGCDILVTTTPSRKPVVK--ADWVSEGTHINAIGADAPGKQELD 232 (325)
T ss_pred -ccCCEEEEecCCCCcEec--HHHcCCCCEEEecCCCCcccccCC
Confidence 357999987765544443 346799998887765544344433
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.64 Score=41.30 Aligned_cols=103 Identities=21% Similarity=0.198 Sum_probs=64.5
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
...+.++..||..|+ | .|..+..+++.. +..|+.++.+++..+.+++ .+....+.....+... .+... ..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRE-RVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHH-HHHHHcCC
Confidence 566788999999998 3 367777778775 4679999988887776643 3432212111111110 00000 01
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++..... ..+..+.+.++++|.++.++.
T Consensus 207 ~~~d~v~~~~g~--~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 207 RGVDVVYDPVGG--DVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred CCcEEEEECccH--HHHHHHHHhhccCCEEEEEcc
Confidence 468987754443 467788899999999987653
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.58 Score=42.46 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......+|+.+|+|. |...+..+..+.+..+|+.++.+++..+...+.+...+.. +.. ..+.. ...
T Consensus 116 a~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~--~~~-~~~~~-~av---- 187 (314)
T PRK06141 116 AASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD--AEV-VTDLE-AAV---- 187 (314)
T ss_pred HHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc--eEE-eCCHH-HHH----
Confidence 44556556678999999997 6655443344345678999999988776666555443321 222 12221 112
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
...|+|+...+....++.. ..++||-.+...........++-..+
T Consensus 188 -~~aDIVi~aT~s~~pvl~~--~~l~~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 188 -RQADIISCATLSTEPLVRG--EWLKPGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred -hcCCEEEEeeCCCCCEecH--HHcCCCCEEEeeCCCCcccccCCHHH
Confidence 3589987655544333432 56899887665555444344444333
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.62 Score=41.91 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=65.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCc-C
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDE-F 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~-~ 178 (311)
....+.+|.+|+..|+|. |..+..+++.. +.+++.++.+++..+.+.+ .+....+.... .+.. ..+... .
T Consensus 154 ~~~~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 226 (336)
T cd08276 154 GLGPLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWG-EEVLKLTG 226 (336)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHH-HHHHHHcC
Confidence 345678899998887765 66777777775 4679999988888777664 24332111111 1111 001000 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ...+..+.+.|+++|.++.++.
T Consensus 227 ~~~~d~~i~~~~--~~~~~~~~~~l~~~G~~v~~g~ 260 (336)
T cd08276 227 GRGVDHVVEVGG--PGTLAQSIKAVAPGGVISLIGF 260 (336)
T ss_pred CCCCcEEEECCC--hHHHHHHHHhhcCCCEEEEEcc
Confidence 146899875443 3467888999999999997754
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.92 Score=40.83 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~~~~~D~V 185 (311)
.+.+|+.+|.|. |......++.+ +.+|+.+|.+++..+.++. .|. .+... +.. ..+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~----~G~----~~~~~~~l~-~~l-----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE----MGL----SPFHLSELA-EEV-----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCC----eeecHHHHH-HHh-----CCCCEE
Confidence 578999999997 66666677775 3699999999876555442 342 22211 111 111 458999
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|...|... .-+...+.++||+.++-.
T Consensus 215 I~t~p~~~-i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 215 FNTIPALV-LTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EECCChhh-hhHHHHHcCCCCcEEEEE
Confidence 98766432 345677889998887643
|
|
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.52 Score=42.48 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred hcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCC
Q 021550 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~ 179 (311)
...+.+|.+|+..| +|. |..+..+++.. +.++++++.+++..+.+++ .|....+.....+... .+.. ...
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 207 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVE-RVKEITGG 207 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHH-HHHHHcCC
Confidence 45678899999886 443 78888888886 4679999988887776643 4543211111111100 0000 011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-.... ..+..+.+.|+++|.++.+..
T Consensus 208 ~~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~ 240 (327)
T PRK10754 208 KKVRVVYDSVGK--DTWEASLDCLQRRGLMVSFGN 240 (327)
T ss_pred CCeEEEEECCcH--HHHHHHHHHhccCCEEEEEcc
Confidence 458987744333 367788999999999998753
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.62 Score=41.92 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=64.3
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec-CCC---CCCCC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQG---QGFPD 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D-~~~---~~~~~ 176 (311)
...+.++.+||..|+ | .|..+..+++.. +.+++.+..+++..+.+++ .|....+.....| ... .....
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGE 208 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCC
Confidence 356788999999984 3 388888888886 3566778888887777743 3443212211111 111 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ...+..+.+.|+++|.++.+.
T Consensus 209 ---~~~d~~i~~~~--~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 209 ---KGVNLVLDCVG--GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred ---CCceEEEECCc--hHHHHHHHHHhccCCeEEEEe
Confidence 46899875443 247788999999999998764
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.47 Score=43.07 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=58.1
Q ss_pred hcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHhcCCCCcEEEEEe---cCCCCC
Q 021550 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHE----QRAASAREDFERTGVSSFVTVGVR---DIQGQG 173 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~g~~~~v~~~~~---D~~~~~ 173 (311)
...+.++.+||..|+ |. |..+..+++..+ .+++.+..++ +..+.++ ..|.+..+..... +.. ..
T Consensus 141 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~-~~ 213 (341)
T cd08290 141 FVKLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALGADHVLTEEELRSLLAT-EL 213 (341)
T ss_pred hcccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcCCCEEEeCcccccccHH-HH
Confidence 456789999999986 43 788888888863 5565554443 3334333 3454321211111 111 00
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.....+.+|+|+-..... .+..+.+.|+++|.++.++
T Consensus 214 i~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 214 LKSAPGGRPKLALNCVGGK--SATELARLLSPGGTMVTYG 251 (341)
T ss_pred HHHHcCCCceEEEECcCcH--hHHHHHHHhCCCCEEEEEe
Confidence 1111112589977544432 4567889999999999765
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.94 Score=39.41 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=65.3
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--CCcEEEEEecCCC---CCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~D~~~---~~~ 174 (311)
....+.++++|+..|. |. |..+..+++.. +.+|+.++.+++..+.+++ .|. ...+.....+... ...
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCChhheeeCCCccHHHHHHHHh
Confidence 4567889999999883 43 77777888875 4689999989888877743 343 1212111111110 011
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ..+|.++-... . ..+..+.+.|+++|.++.++.
T Consensus 172 ~~---~~~d~vi~~~~-~-~~~~~~~~~l~~~g~~v~~g~ 206 (288)
T smart00829 172 GG---RGVDVVLNSLA-G-EFLDASLRCLAPGGRFVEIGK 206 (288)
T ss_pred CC---CCcEEEEeCCC-H-HHHHHHHHhccCCcEEEEEcC
Confidence 11 35898774444 2 467788899999999997754
|
Enoylreductase in Polyketide synthases. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.51 Score=40.42 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=52.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCcC--CCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEF--SGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~~--~~~~D~ 184 (311)
++-++||||.|.-..=-.+-.+. =+-+.++.|+++..++.|+.++..+ ++...+++....-....|+... .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45578999888632211111111 1357788999999999999999887 6666677665432222333211 267999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
+.+++|
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999988
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.85 Score=41.00 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
++.+||..|+ |. |..+..+++.. +.+|+.++.+++..+.+++ .|....+.. .+.....+.......+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~--~~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKK----LGAKEVIPR--EELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHH----cCCCEEEcc--hhHHHHHHHhhccCCcCEE
Confidence 4679999998 54 77888888886 3689999988887776653 344221111 1110011111011468987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+-... . ..+..+.+.|+++|.++.++.
T Consensus 218 ld~~g-~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 218 VDPVG-G-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EECCc-H-HHHHHHHHHhhcCCEEEEEee
Confidence 64333 3 467889999999999998864
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=91.99 E-value=1 Score=41.12 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEE-EecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVG-VRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~-~~D~~~~~~~~ 176 (311)
..+++......+|+.+|||. |...+..+....+-.+|..++.+++..+...+.+.. .+ +++. ..|.. ..+
T Consensus 118 a~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~----~~~~~~~~~~-~~~-- 190 (325)
T PRK08618 118 ATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN----TEIYVVNSAD-EAI-- 190 (325)
T ss_pred HHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH--
Confidence 44566555678999999997 554443333333457899999998877665555432 22 2222 22222 112
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|+|+...|.....+. ..|+||-.+..+..+.
T Consensus 191 ---~~aDiVi~aT~s~~p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 191 ---EEADIIVTVTNAKTPVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred ---hcCCEEEEccCCCCcchH---HhcCCCcEEEecCCCC
Confidence 358999987776655554 7889998887765543
|
|
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.74 Score=40.06 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred HhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 102 MYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
....+.+|++|+..|+ | .|..+..+++.. +.+++.+..+++..+.+++... .....+.....+... .....
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATVGSEEKREFLRELGG--PVDHIFSSRDLSFADGILRATGG 177 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhCC--CcceEeecCchhHHHHHHHHhCC
Confidence 4567889999999874 3 377778888886 4688888888877766654310 011111111111110 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++-....+ .+..+.+.|+++|.++.++.
T Consensus 178 ---~~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~g~ 210 (293)
T cd05195 178 ---RGVDVVLNSLSGE--LLRASWRCLAPFGRFVEIGK 210 (293)
T ss_pred ---CCceEEEeCCCch--HHHHHHHhcccCceEEEeec
Confidence 4689887555544 68889999999999987653
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=2.5 Score=36.75 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=69.2
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
.+.+..+...+|+|+|+-.-+..+...+.+ ..+.+.+|++...++...+.+...-..-.+.-+.+|.+. .+.....
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~~~~ 151 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAELPR 151 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhcccC
Confidence 344556889999999999988888877643 368899999999876554443332222126666777763 2221111
Q ss_pred CCccEE-Ee-------cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 180 GLADSI-FL-------DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 180 ~~~D~V-~~-------d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+--+. |+ .+.+-..++..+...|+||-++.+=
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222222 22 1122345889999999999999873
|
|
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.2 Score=40.03 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=61.3
Q ss_pred CCCCCC-EEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 105 ELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 105 ~~~~g~-~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.+.++. +||..|+ |. |..+..+++.. +.+++.+.-+++..+.++ ..|....+.....+.....+.. +.
T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~---~~ 211 (323)
T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKL--GYEVVASTGKAEEEDYLK----ELGASEVIDREDLSPPGKPLEK---ER 211 (323)
T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----hcCCcEEEccccHHHHHHHhcC---CC
Confidence 477888 9999997 54 88888888887 367777777666655554 3344221111111100001111 34
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|.++-..... .+..+.+.|+++|.++.++.
T Consensus 212 ~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~ 242 (323)
T TIGR02823 212 WAGAVDTVGGH--TLANVLAQLKYGGAVAACGL 242 (323)
T ss_pred ceEEEECccHH--HHHHHHHHhCCCCEEEEEcc
Confidence 89866444332 57888999999999998764
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.36 Score=44.44 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
+..+|..||.+|.++ |.+++++|+..+ ...+..--+.+.++.+++ .|.+..++....|..+..... ....|
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~vvdy~~~~~~e~~kk~-~~~~~ 226 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADEVVDYKDENVVELIKKY-TGKGV 226 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcEeecCCCHHHHHHHHhh-cCCCc
Confidence 688999999998876 668888898863 355566667777777664 466554555554444322221 12679
Q ss_pred cEEEecCCC
Q 021550 183 DSIFLDLPQ 191 (311)
Q Consensus 183 D~V~~d~~~ 191 (311)
|+|+=....
T Consensus 227 DvVlD~vg~ 235 (347)
T KOG1198|consen 227 DVVLDCVGG 235 (347)
T ss_pred cEEEECCCC
Confidence 997643333
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.6 Score=38.90 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=65.8
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|+.+|.|- |.+....++.-+....+++.|.+...++.+.+ .|+.+ -...+.. .... ...|+||+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d---~~~~~~~--~~~~---~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID---ELTVAGL--AEAA---AEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc---ccccchh--hhhc---ccCCEEEEe
Confidence 5789999886 65555555554556678999998887777663 23321 1111110 0111 458999998
Q ss_pred CCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 189 LPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 189 ~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.|- ..++++++.+.|++|..+.=...+.....+.++..
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKY 111 (279)
T ss_pred ccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHh
Confidence 874 34678888888999988875555555444444443
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.48 Score=37.66 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=61.7
Q ss_pred EEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec------CC-CCCCCCcCCCCcc
Q 021550 112 VLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD------IQ-GQGFPDEFSGLAD 183 (311)
Q Consensus 112 VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D------~~-~~~~~~~~~~~~D 183 (311)
|+.+|+|. |.+..+.+.. ....|..+..++ .++..++ .+ +.+...+ .. ....+......+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~----~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKE----QG----LTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHH----HC----EEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhh----ee----EEEEecccceecccccccCcchhccCCCc
Confidence 57788887 6655555544 357899999877 5554333 23 2222111 00 0001100116799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+||+... +..++++.+.+.+.++..++++.......+.+.+.+
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 9998765 345688899999999988888766665554444444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.3 Score=34.63 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~~~~D~V 185 (311)
.++.+|+-+||=+-...+.- ...+..+++.+|++...-. .+ .. .+..-|... ..++....+++|+|
T Consensus 24 ~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhhhhcCCCceEE
Confidence 45689999999875554333 2335678999999875422 22 11 345556553 23443334799999
Q ss_pred EecCCCh-hh----HHHHHHhcccCCcEEEEec
Q 021550 186 FLDLPQP-WL----AIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~~~-~~----~l~~~~~~LkpgG~lv~~~ 213 (311)
++|+|=- .+ ....+..++++++.+++..
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 9999832 12 2234444557777777543
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.99 Score=40.75 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=66.0
Q ss_pred HhcCCCC-----CCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 102 MYLELVP-----GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 102 ~~~~~~~-----g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
....+.+ +.+||..|+ |. |..+..+++..+ ..+|++++.+++..+.+++ .|....+... .+... .+
T Consensus 138 ~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~-~i 210 (336)
T cd08252 138 DRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRPESIAWVKE----LGADHVINHH-QDLAE-QL 210 (336)
T ss_pred HhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCChhhHHHHHh----cCCcEEEeCC-ccHHH-HH
Confidence 3455666 899999985 43 778888888863 2789999998887777643 3442211111 11111 01
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.......+|+++-..+. ...+..+.+.|+++|.++.++.
T Consensus 211 ~~~~~~~~d~vl~~~~~-~~~~~~~~~~l~~~g~~v~~g~ 249 (336)
T cd08252 211 EALGIEPVDYIFCLTDT-DQHWDAMAELIAPQGHICLIVD 249 (336)
T ss_pred HhhCCCCCCEEEEccCc-HHHHHHHHHHhcCCCEEEEecC
Confidence 11111468987754443 3478899999999999998754
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.2 Score=37.69 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=60.1
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC-cCCCCcc
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD-EFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~-~~~~~~D 183 (311)
+.+|.-|+ |.++.++++.+..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. +.. ...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666665 46888888777656789999998877666555554333 23777888886511 100 0014689
Q ss_pred EEEecCCC-----hh------------hHHHHHHhcccCCcEEEEe
Q 021550 184 SIFLDLPQ-----PW------------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~~-----~~------------~~l~~~~~~LkpgG~lv~~ 212 (311)
.+|.+... .| .+++.+.+.++.+|.++++
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 98865431 11 2355566666666766554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.3 Score=38.30 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=54.4
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|..+|+|. |......+...+....|+++|.+++.++.+++ .+... . ...+.. ..+ ...|+||+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~-~~~-----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA-EAV-----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH-HHh-----cCCCEEEEC
Confidence 5799999887 44332223332212489999999987776653 34321 1 111111 111 458999998
Q ss_pred CCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 189 LPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|.. ..++..+...++++..++..+.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 8754 3456777778888887765443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=4.5 Score=35.16 Aligned_cols=124 Identities=22% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCcCCCCc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLA 182 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~~~~~~ 182 (311)
+.++.. |..=+||=.++..+.+. .-++..+|+.++-....++++. .+.++.+..+|-.. ..++.. +.=
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~--erR 157 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPK--ERR 157 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCC--Ccc
Confidence 344444 77888988888777765 6799999999998888888876 23458888888653 223331 334
Q ss_pred cEEEecCCC-----hhhHHHHHHhccc--CCcEEEEecCCH--HHHHHHHHHHhh-cCceeeEEEe
Q 021550 183 DSIFLDLPQ-----PWLAIPSAKKMLK--QDGILCSFSPCI--EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d~~~-----~~~~l~~~~~~Lk--pgG~lv~~~~~~--~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
-+|++|+|- ...+++.+.+.++ ++|..+++-|.. .++.++.+.|+. +...+-..|.
T Consensus 158 glVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL 223 (279)
T COG2961 158 GLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIEL 223 (279)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEE
Confidence 578889882 2234555555554 678877776754 567777777776 5555444444
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.42 Score=40.58 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=52.7
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
.|+..++.-..+-|.+||.|+|+.+..+..+ +..++..+|.+..++.-.+...+.. +....+++.|+..
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 3667777777789999999999999999987 4678999999988877766554432 2347777777754
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.27 E-value=3.9 Score=36.22 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=64.0
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
..+...++.+|+..|+. .|..+..+++.. +.+++.++.+++..+.+++ .|... + +.. .. .+..
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~-~-~~~--~~--~~~~--- 190 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALA--GAHVVAVVGSPARAEGLRE----LGAAE-V-VVG--GS--ELSG--- 190 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE-E-Eec--cc--cccC---
Confidence 33444568999999983 377888888886 4689999888887777754 34332 1 111 11 1222
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|+++.++.
T Consensus 191 ~~~d~vl~~~g~~--~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 191 APVDLVVDSVGGP--QLARALELLAPGGTVVSVGS 223 (305)
T ss_pred CCceEEEECCCcH--HHHHHHHHhcCCCEEEEEec
Confidence 4689977544432 67889999999999998753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.25 E-value=2.6 Score=37.49 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.++.+|+..|+ | .|..+..+++.. +.++++++.+ +..+.++ ..+....+.....+........ ..+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~--g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~---~~~ 209 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKAL--GAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGG---EKY 209 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCC---CCC
Confidence 4788999999997 3 377888888886 4688888754 5444443 3444221111111110001121 469
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+|+-........+......|+++|.++.+..
T Consensus 210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVGG 241 (319)
T ss_pred cEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence 99886544222222233334999999997754
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.6 Score=42.90 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=62.8
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
++|+.+|+|. |......++. .+..++.+|.+++.++.+++ .+ .....+|..+.. +.+..-+.+|.++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5788888887 5544444333 24689999999998887764 23 678899998622 22111157898887
Q ss_pred cCCChhh--HHHHHHhcccCCcEEEEecCCHH
Q 021550 188 DLPQPWL--AIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 188 d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
..++..+ .+-.+.+...|...++.-....+
T Consensus 488 ~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~ 519 (558)
T PRK10669 488 TIPNGYEAGEIVASAREKRPDIEIIARAHYDD 519 (558)
T ss_pred EcCChHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 6665443 23334455678878887665543
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.25 Score=44.65 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=67.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+++|+.||.|++.+.+.+. +-..+.++|+++.+.+.-+.|+. ....+|+.+....... ..+|+++..+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~-~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP-KDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH-HT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc-ccceEEEeccC
Confidence 6899999999999888776 34578899999999988888764 5667888752211111 14899887666
Q ss_pred Ch------------------hhHHHHHHhcccCCcEEEEecCCH------HHHHHHHHHHhh
Q 021550 191 QP------------------WLAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL 228 (311)
Q Consensus 191 ~~------------------~~~l~~~~~~LkpgG~lv~~~~~~------~~~~~~~~~l~~ 228 (311)
+. ...+-.+.+.++|.-.++=-++.. ..+..+.+.|.+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEE 132 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHH
T ss_pred CceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccc
Confidence 33 112344556678866555434322 346677777766
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.17 Score=37.95 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE 143 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~ 143 (311)
+....+|+|||+|.+...|.+. +..=+|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4557999999999999877765 46677888754
|
; GO: 0008168 methyltransferase activity |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=3.1 Score=35.43 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
++++||..|+++ .++..+++.+ ..+.+|++++.+++..+.+.+.....+ .+.+...|+.+.. + .. ...
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999864 4444444433 235689999998877665544443322 3777888887411 1 00 001
Q ss_pred CCccEEEecCCCh----------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~----------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|.++.+.... ...++.+.+.++.+|.+++.+.
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3568887654311 1235666677778888887654
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=90.88 E-value=3.4 Score=36.38 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC-
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS- 179 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~- 179 (311)
-+.+...++|+|||.|.++.+++..+. +...++.+|........=. .+........+.-+..|+.+..+.....
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l~~~~~~ 93 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDLSKLPEL 93 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccchhhcccc
Confidence 356777999999999999999999873 3468899998665443222 2222221112555566666533321110
Q ss_pred --CCccEEEe----cCCChhhHHHHHHhccc-------CCcEEEE
Q 021550 180 --GLADSIFL----DLPQPWLAIPSAKKMLK-------QDGILCS 211 (311)
Q Consensus 180 --~~~D~V~~----d~~~~~~~l~~~~~~Lk-------pgG~lv~ 211 (311)
..-.+|.+ .......+|+.+.+..+ ..|.++.
T Consensus 94 ~~~~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA 138 (259)
T PF05206_consen 94 QNDEKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIA 138 (259)
T ss_pred cCCCCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEE
Confidence 11223332 33344446666666554 4566654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.51 Score=43.01 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.++++||..|++ .|..+..+++..+ .+++++. +++..+.++ ..|....+.....+.. ..+.....+.+|+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G--~~v~~~~-~~~~~~~~~----~~g~~~v~~~~~~~~~-~~l~~~~~~~~d~ 224 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAG--YKVITTA-SPKNFDLVK----SLGADAVFDYHDPDVV-EDIRAATGGKLRY 224 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcC--CeEEEEE-CcccHHHHH----hcCCCEEEECCCchHH-HHHHHhcCCCeeE
Confidence 688999999963 3888888998863 5777765 556666554 2454321221111111 1111111256898
Q ss_pred EEecCCChhhHHHHHHhcccC--CcEEEEecCC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQ--DGILCSFSPC 215 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~Lkp--gG~lv~~~~~ 215 (311)
|+-.... ...+..+.+.|++ +|.++.+...
T Consensus 225 vl~~~g~-~~~~~~~~~~l~~~~~g~~v~~g~~ 256 (339)
T cd08249 225 ALDCIST-PESAQLCAEALGRSGGGKLVSLLPV 256 (339)
T ss_pred EEEeecc-chHHHHHHHHHhccCCCEEEEecCC
Confidence 7743332 2478889999999 9999887543
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.3 Score=40.30 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
..+++......++..+|||. +..-+..+..+.+-.+|..++.+++..+...+.+...++ .+... +.. ...
T Consensus 119 a~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~----~v~~~~~~~-~av--- 190 (315)
T PRK06823 119 VARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGF----AVNTTLDAA-EVA--- 190 (315)
T ss_pred HHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCC----cEEEECCHH-HHh---
Confidence 44566556678999999998 555555555555678999999999988776666654332 23222 222 222
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
...|+|+...+....++. .+.|+||-.+..++.+.....++-
T Consensus 191 --~~ADIV~taT~s~~P~~~--~~~l~~G~hi~~iGs~~p~~~Eld 232 (315)
T PRK06823 191 --HAANLIVTTTPSREPLLQ--AEDIQPGTHITAVGADSPGKQELD 232 (315)
T ss_pred --cCCCEEEEecCCCCceeC--HHHcCCCcEEEecCCCCcccccCC
Confidence 458999876655444553 246899888887765544444433
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.74 Score=42.83 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++.+|+.+|+|. |..++..+..++ .+|+.+|.+++.++.+...+ +.. +.....+. ..+.+.. ..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~~--v~~~~~~~--~~l~~~l-~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GGR--IHTRYSNA--YEIEDAV-KRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cce--eEeccCCH--HHHHHHH-ccCCEEE
Confidence 456799999996 888888888863 58999999988766654432 211 21111111 0111111 3589988
Q ss_pred ecCC-----ChhhHHHHHHhcccCCcEEEEe
Q 021550 187 LDLP-----QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~~-----~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+ .|.-+-....+.++|++.++-.
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 6542 1222336777788999887754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.49 Score=41.42 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCEEEEEcccccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHh
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.-+|+|+|+|+|.++..+++.+.. ..+++.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999999988753 25899999999998888877654
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.1 Score=40.07 Aligned_cols=96 Identities=14% Similarity=0.213 Sum_probs=57.2
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..+++. +..|+.+|.+++.++.+.++.... +. . .++.+. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH-
Confidence 3688899986 44 33333333 468999999999998877643211 10 0 011111 1221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCC
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+ ...|+||...|+.. .++.++.+.++++..+++-+.+
T Consensus 77 ~~~-----~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 77 AAV-----ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred Hhh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 111 45799998888765 3466677888888777654444
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.6 Score=42.11 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
..+|+.+|+|. |......+.. .+-.++.+|.+++.++.+++ .| ..+..+|..+.. +....-+.+|.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 36899999997 7666555554 24689999999999988864 23 567889988622 2211114688888
Q ss_pred ecCCChhhH--HHHHHhcccCCcEEEEe
Q 021550 187 LDLPQPWLA--IPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~~~~~~~--l~~~~~~LkpgG~lv~~ 212 (311)
+..+++... +-...+.+.|.-.+++-
T Consensus 470 v~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 470 NAIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 777665532 22344555676666653
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.3 Score=35.17 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=60.8
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CcEEEEEecCCCCC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG-VS--------SFVTVGVRDIQGQG 173 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~D~~~~~ 173 (311)
+|..+|+|+ |.-...++.. .+..|+.+|.+++.++.+++.+.. .+ +. .++.+ ..|+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~--- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE--- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG---
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH---
Confidence 478899998 5433333333 268999999999999888876654 11 11 12332 23332
Q ss_pred CCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 174 FPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+. ...|+|+-..++.. +++.++.+.+.|+..|..-+.+.. ..++...+
T Consensus 75 --~~--~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~-i~~la~~~ 126 (180)
T PF02737_consen 75 --EA--VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLS-ISELAAAL 126 (180)
T ss_dssp --GG--CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS--HHHHHTTS
T ss_pred --HH--hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCC-HHHHHhcc
Confidence 11 35899997777554 578888889999999886555433 44444444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.3 Score=39.61 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=62.6
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
...+.++.+||..|++ .|..+..+++.. +.+++.+..+++..+.+++ .|.+..+.....+... .+... ..
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 205 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQ-RVKEATGG 205 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecChHHHHHHHh----cCCCEEecccchhHHH-HHHHHhcC
Confidence 3456889999999873 477888888886 4678888877776666642 3543212211111110 01100 11
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+|+-..... .+..+.+.|+++|.++.+.
T Consensus 206 ~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g 237 (323)
T cd05282 206 AGARLALDAVGGE--SATRLARSLRPGGTLVNYG 237 (323)
T ss_pred CCceEEEECCCCH--HHHHHHHhhCCCCEEEEEc
Confidence 4689987544443 3467788999999998654
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.99 Score=36.11 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=32.4
Q ss_pred EEccccc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHhcCCCCcEEEEE
Q 021550 114 ESGTGSG--SLTTSLA-RAVAPTGHVYTFDFHEQRAASARED--FERTGVSSFVTVGV 166 (311)
Q Consensus 114 diG~G~G--~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~g~~~~v~~~~ 166 (311)
|+|+..| ..+..++ +..++.++|+++|.++..++..+++ +........+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 7999999 6555554 3456789999999999999999988 55443322244444
|
; PDB: 2PY6_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.3 Score=39.63 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=64.2
Q ss_pred HHHHhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++++.+.-. ....||.++-.-|.+++.++.. ++ +.+--|--.-...+.|+..++++.. .+...+.. ..++
T Consensus 34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~----~~~~ds~~~~~~~~~n~~~n~~~~~-~~~~~~~~-~~~~-- 104 (378)
T PRK15001 34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KP----YSIGDSYISELATRENLRLNGIDES-SVKFLDST-ADYP-- 104 (378)
T ss_pred HHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CC----CeeehHHHHHHHHHHHHHHcCCCcc-cceeeccc-cccc--
Confidence 455554432 2238999999999999999853 22 2221112233455678888887541 12233333 3344
Q ss_pred CCCCccEEEecCCChhh----HHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~----~l~~~~~~LkpgG~lv~ 211 (311)
+.+|+|++-+|-... .+..+...|.||+.+++
T Consensus 105 --~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 105 --QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred --CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 569999998886544 45667779999999875
|
|
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.06 E-value=3.3 Score=37.18 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=61.8
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++++|+..|+ |. |..+..+++.. +.+|+.+.. +...+.+++ .|... +.....+........
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--g~~v~~~~~-~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~--- 201 (331)
T cd08273 133 RAAKVLTGQRVLIHGASGGVGQALLELALLA--GAEVYGTAS-ERNHAALRE----LGATP-IDYRTKDWLPAMLTP--- 201 (331)
T ss_pred HhcCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeC-HHHHHHHHH----cCCeE-EcCCCcchhhhhccC---
Confidence 3457889999999996 43 77778888875 367888775 666555543 34211 111111111111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|.++.++.
T Consensus 202 ~~~d~vl~~~~~~--~~~~~~~~l~~~g~~v~~g~ 234 (331)
T cd08273 202 GGVDVVFDGVGGE--SYEESYAALAPGGTLVCYGG 234 (331)
T ss_pred CCceEEEECCchH--HHHHHHHHhcCCCEEEEEcc
Confidence 4689877544443 37888999999999987754
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.63 Score=44.34 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=58.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQ----RAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..|+|+.+|.|+++++|... .|..+..-+. .+...- ..|+-. .-.|.+ +.|+. ....||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIy----dRGLIG----~yhDWC-E~fsT-YPRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIY----DRGLIG----VYHDWC-EAFST-YPRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhh----hcccch----hccchh-hccCC-CCcchhhe
Confidence 37999999999999888654 2555444332 222221 224321 223444 23321 12689987
Q ss_pred EecC--------CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 186 FLDL--------PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 186 ~~d~--------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
-.+. -....++-++-++|+|+|.+++- ...+-+.++...+.
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~ 480 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAK 480 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHH
Confidence 5431 13346788999999999998853 33444444444443
|
; GO: 0008168 methyltransferase activity |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.96 Score=37.69 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=48.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH------------HHhcCCCCcEEEEEecCCCCCCCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARED------------FERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~------------~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
++|-.+|.|- |..++.++... +.+|+++|++++.++..++- +.+.....++.+. .|.. ...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~-~ai-- 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE-EAI-- 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH-HHH--
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh-hhh--
Confidence 3678888887 54443333332 57999999999988776531 0000001112221 1211 001
Q ss_pred cCCCCccEEEecCCCh------------hhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQP------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...|++|+..|.| ..+++.+.+.|+++-.+++-+.
T Consensus 75 ---~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 75 ---KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp ---HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred ---hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 3579998877644 3567888888889776665443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.21 Score=38.71 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCCCCcCCCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 162 v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+++..+|+.+ .++. ....+|++++|.-.| .+++..+.+.++|||.++.|+.. ..+...|.+ ||.
T Consensus 33 L~L~~gDa~~-~l~~-l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a----~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 33 LTLWFGDARE-MLPQ-LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA----GAVRRALQQAGFE 105 (124)
T ss_dssp EEEEES-HHH-HHHH-B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B----HHHHHHHHHCTEE
T ss_pred EEEEEcHHHH-HHHh-CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech----HHHHHHHHHcCCE
Confidence 5667778753 2221 116799999986433 26899999999999999988764 335666666 775
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.8 Score=39.34 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+|.+||..|. |. |..+..+++.++ .+|+++..+ +..+.++ ..+....+.....+.. ..+.. ...+|++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~-~~l~~--~~~vd~v 231 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVK----SLGADDVIDYNNEDFE-EELTE--RGKFDVI 231 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHH----HhCCceEEECCChhHH-HHHHh--cCCCCEE
Confidence 4999999984 44 778888888863 567776543 3333333 3344221211111111 11111 1468998
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+-..... .+..+.+.|+++|.++.+.
T Consensus 232 i~~~g~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 232 LDTVGGD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred EECCChH--HHHHHHHHhccCCEEEEec
Confidence 8655543 7888999999999999764
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.8 Score=42.32 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCc--CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDE--FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~--~~ 179 (311)
+|++||..|+++ .++..+++.+ ..+.+|+.++.+++.++.+.+.+... ..+.++..|+.+.. +... ..
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578899998643 3333333322 12468999999988776665544322 23778888886511 1100 01
Q ss_pred CCccEEEecCCC------------------------hhhHHHHHHhcccC---CcEEEEecC
Q 021550 180 GLADSIFLDLPQ------------------------PWLAIPSAKKMLKQ---DGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~------------------------~~~~l~~~~~~Lkp---gG~lv~~~~ 214 (311)
+.+|+||.+... ...+++.+.+.++. +|.+++++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 468998865431 22345666777766 688887654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.7 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCC
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH 142 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~ 142 (311)
...+||.+|||. |...+..+.+. +-++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 457999999997 76655555554 35789988876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.31 Score=41.30 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=64.5
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-- 171 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-- 171 (311)
|-.+...++.+...+|...+|.--|.|+.+..+++.- +..++++.|.+|-+.+.|+....+.- ..++..+.+.+..
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~-~~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELM-HPTLKAVLGNFSYIK 106 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhc-chhHHHHHhhhHHHH
Confidence 4444557888999999999999999999999998874 78899999999988888776543211 1112222222211
Q ss_pred -----CCCCCcCCCCccEEEecCCCh
Q 021550 172 -----QGFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 172 -----~~~~~~~~~~~D~V~~d~~~~ 192 (311)
..+.+ .++|.|++|..+.
T Consensus 107 ~l~~~~gl~~---~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 107 SLIADTGLLD---VGVDGILMDLGCS 129 (303)
T ss_pred HHHHHhCCCc---CCcceEEeecCcc
Confidence 22333 6889988776543
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.5 Score=40.29 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
..+++......+++.+|||. +..-+.++..+.+-.+|+.++.+++..+...+.+...+ +.+... |.. ...
T Consensus 120 a~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~----~~v~~~~~~~-~av--- 191 (346)
T PRK07589 120 AAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG----LRIVACRSVA-EAV--- 191 (346)
T ss_pred HHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH---
Confidence 44556555567899999998 55544444445567899999999998777666665433 333322 222 222
Q ss_pred CCCCccEEEecCCChh--hHHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
...|+|+...+... .++.. +.|+||-.+..+..+.....++
T Consensus 192 --~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aIGs~~p~~~El 234 (346)
T PRK07589 192 --EGADIITTVTADKTNATILTD--DMVEPGMHINAVGGDCPGKTEL 234 (346)
T ss_pred --hcCCEEEEecCCCCCCceecH--HHcCCCcEEEecCCCCCCcccC
Confidence 35899987554322 23332 4689999888766544333333
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.4 Score=38.29 Aligned_cols=106 Identities=18% Similarity=0.106 Sum_probs=59.9
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC----CcEEEEEecCCCCCCCCcCCCCcc
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
.+|+.+|+|. |. ++..|++. +..|+.++.+++.++..++. .|+. ........... .. +. .+.+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~-~~--~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TA-DA--AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-Cc-cc--ccccC
Confidence 4799999998 55 44455443 46799999887666555432 1221 00000000010 01 11 15799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 225 (311)
+||+..- +...+++.+...+.++..++...--......+.+.
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~ 116 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAAR 116 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHh
Confidence 9987653 34567888999999999887654333333333333
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.8 Score=39.73 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=42.2
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAV---AP----TGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~---~~----~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
+.......-.++|+|+|.|.++..+++.+ .| ..+++.+|+|++..+.-+++++..
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34444445689999999999999888765 22 578999999999888777776654
|
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.9 Score=38.92 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred HhcCCCC-----CCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 102 MYLELVP-----GCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 102 ~~~~~~~-----g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+++.+ +.+||..|+. .|..+..+++.+. +.+|+++..+++..+.+++ .|.+..+.. ..+.. ..+
T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~-~~i 209 (336)
T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLK-AQL 209 (336)
T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHH-HHH
Confidence 4455666 8999999853 3777778888752 4689999888877666643 454321111 11111 111
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.....+.+|+|+ +.......+..+.+.|+++|+++.+.
T Consensus 210 ~~~~~~~vd~vl-~~~~~~~~~~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 210 EKLGLEAVSYVF-SLTHTDQHFKEIVELLAPQGRFALID 247 (336)
T ss_pred HHhcCCCCCEEE-EcCCcHHHHHHHHHHhccCCEEEEEc
Confidence 111114689877 43222346788899999999998763
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.92 Score=41.70 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
-...+..+-+.|+|+|.|.|+++..++-.. +-.|+++|-+....+.|++
T Consensus 146 Ssi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 146 SSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 334455666899999999999999988775 6899999999776666654
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.5 Score=39.41 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
..+|..+|.|. |..+..+|-.+ ++.|+.+|+|.++++.....+. .++......... +.+.. ...|+||-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~--iee~v-~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSN--IEEAV-KKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHH--HHHHh-hhccEEEE
Confidence 35788899887 88888887765 6899999999999887765432 225554433322 22110 35788763
Q ss_pred -----cCCChhhHHHHHHhcccCCcEEEE
Q 021550 188 -----DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 -----d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
....|....+++.+.|+||+.++=
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 223666788999999999999873
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.24 E-value=4.4 Score=32.09 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..+.+|+.+|+|. .+..+++.+. +...|+.+|.+++..+...+.+.... +.....|..+ .. ..+|+
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~-----~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEE-LL-----AEADL 84 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhh-cc-----ccCCE
Confidence 4568999999864 3333333221 13579999999887665444332211 1111122221 11 56899
Q ss_pred EEecCCChhh---HHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPWL---AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+...|.... ........++++..++-.+..... ..+.+.+++
T Consensus 85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~-~~l~~~~~~ 130 (155)
T cd01065 85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE-TPLLKEARA 130 (155)
T ss_pred EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC-CHHHHHHHH
Confidence 9986654321 111112335677666543332221 145555544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.3 Score=36.91 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--------CCC---------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVS---------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------g~~---------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |.-....+.. .+..|+.+|.+++.++.+++++... ... .++.+ ..|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH-
Confidence 4788999987 4322222222 2468999999999888887654211 110 11221 12221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecC
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+ ...|+||...|... .++..+.+.++++..|+..++
T Consensus 80 ~a~-----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 80 EAV-----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred HHh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 111 45799999888653 456777777777776654433
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.8 Score=32.69 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=65.4
Q ss_pred EEEEEccccc-HHHHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGSG-SLTTSLARAVAPTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~G-~~~~~la~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|.-+|+|.. ..-...+....+...+.+ +|.+++..+.+.+ ..+. . ...|.. ..+.. ..+|+|++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~~----~-~~~~~~-~ll~~---~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYGI----P-VYTDLE-ELLAD---EDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTTS----E-EESSHH-HHHHH---TTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhcc----c-chhHHH-HHHHh---hcCCEEEEe
Confidence 6888999874 333323334335667664 7999887776543 3342 2 333443 22222 469999988
Q ss_pred CCChhhHHHHHHhcccCCcEEEEecC---CHHHHHHHHHHHhh
Q 021550 189 LPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~~~l~~~~~~LkpgG~lv~~~~---~~~~~~~~~~~l~~ 228 (311)
.|... -.+.+...|+.|-.+++--| +.++..++.+..++
T Consensus 70 tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 70 TPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp SSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 77643 56777778888888887544 55666666666655
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=88.75 E-value=3.5 Score=33.93 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH------------------HHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE------------------QRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+|+.+|||. |...+..+.+. +-++++.+|.+. ...+.+++++.+.+..-.+......+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 488999996 66554444443 457788887764 3345555555554433224444444432
Q ss_pred CCCCCcCCCCccEEEecCCCh
Q 021550 172 QGFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~ 192 (311)
....+ .-..+|+||.....+
T Consensus 80 ~~~~~-~l~~~DlVi~~~d~~ 99 (174)
T cd01487 80 NNLEG-LFGDCDIVVEAFDNA 99 (174)
T ss_pred hhHHH-HhcCCCEEEECCCCH
Confidence 11111 114689988654433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.9 Score=38.35 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
...+.++.+|+..|+. .|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+............
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLA----LGAAHVIVTDEEDLVAEVLRITGGK 212 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHhCCC
Confidence 4567788999999873 366666677764 4788888888877666542 3432211111111100000000013
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|.++..... ..+..+.+.++++|.++.++.
T Consensus 213 ~~d~vi~~~~~--~~~~~~~~~l~~~g~~v~~g~ 244 (328)
T cd08268 213 GVDVVFDPVGG--PQFAKLADALAPGGTLVVYGA 244 (328)
T ss_pred CceEEEECCch--HhHHHHHHhhccCCEEEEEEe
Confidence 68998865554 357788899999999987653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.67 E-value=9 Score=34.61 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=53.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |....+.+...+....++.+|++++..+ .+..............+...|.. .+ ...|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l-----~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DC-----KGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--Hh-----CCCCEEEEc
Confidence 588899987 5554444444333358999999987665 33332211111111223323321 12 457999876
Q ss_pred CCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 189 ~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
.+.++ ++.+.+.+ ..|.|.+++.+...+.+.
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~d~~~ 123 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPVDVLT 123 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHHHHH
Confidence 54321 12233333 458898887754443333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.1 Score=40.53 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=63.0
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
.+|+.+|+|. |......+.. .+..++.+|.+++.++.+++ .| ..+..+|+.+.. +....-+..|.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 5788888886 5554444443 24689999999999888764 23 567889988622 22111156899888
Q ss_pred cCCChhhHH--HHHHhcccCCcEEEEecCCH
Q 021550 188 DLPQPWLAI--PSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 188 d~~~~~~~l--~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+++...+ -...+.+.|...+++-....
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 777665432 23455577888887654443
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.9 Score=35.88 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..++.. +..|+.+|.+++.++.+.+.+... +. . .++.+. .|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-
Confidence 4788999997 43 33333333 468999999999888765543221 21 0 112221 1221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.+ ...|+|+...|+.. .++..+...++++..++..+.+.. ...+.+.+
T Consensus 80 -~~-----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~s~la~~~ 131 (292)
T PRK07530 80 -DL-----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS-ITRLASAT 131 (292)
T ss_pred -Hh-----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC-HHHHHhhc
Confidence 11 46899999888643 456778888899887764333332 23444444
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.5 Score=37.79 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-CCCCCCcCCCCccEE
Q 021550 109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~~~~~D~V 185 (311)
+.+||..|+ |. |..+..+++.. +.+|+.++.+++..+.+++ .|.+..+.....+.. ...... +.+|+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~d~v 217 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKL--GYTVVALTGKEEQADYLKS----LGASEVLDREDLLDESKKPLLK---ARWAGA 217 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEEcchhHHHHHHHHhcC---CCccEE
Confidence 468999987 44 77888888886 4579999999887776643 344321111100000 011122 458987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+-.... ..+..+.+.|+++|.++.++.
T Consensus 218 i~~~~~--~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 218 IDTVGG--DVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred EECCch--HHHHHHHHhhcCCCEEEEEec
Confidence 743333 378899999999999998754
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.52 E-value=3.8 Score=36.61 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred CEEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc----------CCC---------CcEEEEEec
Q 021550 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERT----------GVS---------SFVTVGVRD 168 (311)
Q Consensus 110 ~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------g~~---------~~v~~~~~D 168 (311)
.+|..+|+|. |.. +..++.. +..|+.+|.+++.++.+++.+... +.. .++.+. .|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CC
Confidence 4789999997 543 3333333 468999999999998776543321 110 001111 11
Q ss_pred CCCCCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
. ..+ ...|+||...+... .++.++.+.++++..++..+. .-...++.+.+
T Consensus 80 ~--~~~-----~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~ts-g~~~~~la~~~ 133 (291)
T PRK06035 80 Y--ESL-----SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS-GIMIAEIATAL 133 (291)
T ss_pred H--HHh-----CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCC-CCCHHHHHhhc
Confidence 1 011 45799998887663 456667777788776653322 22344444444
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.75 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred EEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
|+|+.||.|+++.-+.+. +--.+.++|+++.+.+.-+.|+.. .+..+|+.+....+. ..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~--~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDI--PDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhC--CCcCEEEecCC
Confidence 689999999999888765 334567799999998888877532 233466654221111 35899886655
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.82 Score=41.02 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----CCcCCCCccEEEec
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF----PDEFSGLADSIFLD 188 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~~~~~~~~D~V~~d 188 (311)
+|||+|.-.+-..+-.+. .+-..++.|+++..+..|++|+..++....+.+++....+..+ .+.....||.+.++
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 677766533322222222 2456789999999999999999999998888888775433111 11111458998888
Q ss_pred CC
Q 021550 189 LP 190 (311)
Q Consensus 189 ~~ 190 (311)
+|
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 77
|
|
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.6 Score=37.05 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=64.5
Q ss_pred HHhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCC
Q 021550 101 IMYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP 175 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~ 175 (311)
+....+.++.+||..|.. .|..+..+++.. +.++++++.+++..+.+++ .+....+.....+... ...+
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~ 186 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLK--GAEIYATASSDDKLEYLKQ----LGVPHVINYVEEDFEEEIMRLTG 186 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHcC
Confidence 346678899999886543 366777888886 4789999888877766643 4543222221112111 0112
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ..+|.++-... . ..+..+.+.|+++|.++.++
T Consensus 187 ~---~~~d~v~~~~~-~-~~~~~~~~~l~~~g~~v~~~ 219 (303)
T cd08251 187 G---RGVDVVINTLS-G-EAIQKGLNCLAPGGRYVEIA 219 (303)
T ss_pred C---CCceEEEECCc-H-HHHHHHHHHhccCcEEEEEe
Confidence 1 46898764443 2 46778889999999998764
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.32 E-value=4.3 Score=36.05 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=52.5
Q ss_pred EEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |. ++..+.+. +.+|+++|.+++.++.+.+. +. +.....+. ... ...|+||+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~--~~~-----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----GL---VDEASTDL--SLL-----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----CC---cccccCCH--hHh-----cCCCEEEEc
Confidence 577888886 33 44444333 46899999999887776542 32 11111111 111 458999998
Q ss_pred CCChh--hHHHHHHhcccCCcEEEEecCC
Q 021550 189 LPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 189 ~~~~~--~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.|... .+++.+...++++..+.-.+..
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcch
Confidence 87442 4567777778877655544433
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.7 Score=36.18 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=71.4
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
-+|.|+...-+++--...+.|+|+|.--|+.++..|..+ |...+|+++|++-..++.+... .+. |.++.++
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~-i~f~egs 126 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPD-ILFIEGS 126 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCC-eEEEeCC
Confidence 346665544444433455899999999988877776544 3347899999886654433321 333 8999988
Q ss_pred CCCCCCCC---cCCCCccEE--EecCCCh----hhHHHHHHhcccCCcEEEEecCCH
Q 021550 169 IQGQGFPD---EFSGLADSI--FLDLPQP----WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 169 ~~~~~~~~---~~~~~~D~V--~~d~~~~----~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+....+ .....+--| ++|.... .+.++...++|..|-+++++....
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 76521110 000222233 3454433 244666778888899999875543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=6.4 Score=34.32 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCc--CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDE--FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~--~~ 179 (311)
++.++|..|. +|.++..+++.+. .+.+|+.++.+++.++...+.+...+ ..+.++..|+.+.. +... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678998885 4455554444332 24689999998877665554444333 23677788886411 1100 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4579987543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=6.1 Score=35.63 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----CCC---cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----FPD---EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~~~---~~~ 179 (311)
.+.++|..|+++| ++..+++.+ ..+.+|+.+..+++..+.+.+.+....-...+.++..|+.+.. +.+ ...
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4678888887654 344444433 2357899999988877666655543322223788888987511 000 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 92 ~~iD~li~nA 101 (313)
T PRK05854 92 RPIHLLINNA 101 (313)
T ss_pred CCccEEEECC
Confidence 4689888643
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=2.2 Score=39.13 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHhcCCCCcEEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---------------------QRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
...+||.+|||. |...+..+.+. +-++++.+|.+. ...+.|++.+.+.+..-.++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 357899999996 66555444443 357888888763 2445566666655443335555
Q ss_pred EecCCCCCCCCcCCCCccEEEecC
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
..++....+.+ .-..+|+|+...
T Consensus 102 ~~~~~~~~~~~-~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEE-LVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHH-HhcCCCEEEEcC
Confidence 55554211111 114689987544
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.5 Score=37.33 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=62.7
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|++ .|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+...........
T Consensus 133 ~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
T cd05276 133 QLGGLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEATGG 206 (323)
T ss_pred HhcCCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHhCC
Confidence 34567889999999963 366777777775 4678888888887776643 243221111111111000000001
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++...... .+..+.+.++++|.++.+.
T Consensus 207 ~~~d~vi~~~g~~--~~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 207 RGVDVILDMVGGD--YLARNLRALAPDGRLVLIG 238 (323)
T ss_pred CCeEEEEECCchH--HHHHHHHhhccCCEEEEEe
Confidence 4689988655543 3677888899999988764
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.84 E-value=7 Score=34.69 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..++.. +..|+.+|.+++.++.+++++ .+.+. . .++.+ ..|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence 3688899986 44 44444433 458999999999987665332 22231 1 01221 12221
Q ss_pred CCCCCcCCCCccEEEecCCCh----hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 172 QGFPDEFSGLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~----~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.. ...|+||...+.. ..++..+.+.++++..++..+... ....+.+.+
T Consensus 79 -~~-----~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~~la~~~ 130 (282)
T PRK05808 79 -DL-----KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SITELAAAT 130 (282)
T ss_pred -Hh-----ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHHhh
Confidence 11 4689999887642 357788888889888775433332 233444444
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=87.79 E-value=3 Score=36.93 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
...+.++++||..|+. .|..+..+++.. +.+|+.++.+++..+.+.+ .+....+.....+... .....
T Consensus 139 ~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~- 211 (325)
T cd08253 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWA--GARVIATASSAEGAELVRQ----AGADAVFNYRAEDLADRILAATAG- 211 (325)
T ss_pred HhCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHHcCC-
Confidence 4677889999999863 266666677775 4789999988887766643 3443211111111110 00121
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..... .+....+.++++|.++.++.
T Consensus 212 --~~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~~~ 244 (325)
T cd08253 212 --QGVDVIIEVLANV--NLAKDLDVLAPGGRIVVYGS 244 (325)
T ss_pred --CceEEEEECCchH--HHHHHHHhhCCCCEEEEEee
Confidence 4699988655443 45677788999999987653
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=7.8 Score=33.83 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC-cCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD-EFSG 180 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~-~~~~ 180 (311)
.++++|..|+++|. +..+++.+ ..+.+|+.++.+++.++.+.+.+.... ...+.++..|+.+.. + .. ...+
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46788988876643 33333332 235789999999887776665554321 123778888887511 1 00 0014
Q ss_pred CccEEEecC
Q 021550 181 LADSIFLDL 189 (311)
Q Consensus 181 ~~D~V~~d~ 189 (311)
.+|+++.+.
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 689887653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=7.2 Score=35.56 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=48.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.+.+||..|+++ .++..+++.+ ..+.+|+.++.+++.++...+.+...+. .+.++..|+.+.. +.. ...
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 456888888654 4444444433 2246899999998887776666655443 3778888987511 110 001
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 84 g~iD~lInnA 93 (334)
T PRK07109 84 GPIDTWVNNA 93 (334)
T ss_pred CCCCEEEECC
Confidence 4689988653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.2 Score=36.78 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|.+|..+|+|. |......++.+ +.+|+++|.+......+. ..+ + ...++. +.+ ...|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~----~~~----~--~~~~l~-ell-----~~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGAD----EFG----V--EYVSLD-ELL-----AQADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHH----HTT----E--EESSHH-HHH-----HH-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcc----ccc----c--eeeehh-hhc-----chhhhh
Confidence 3588999999998 88878888887 479999999987554111 112 2 122332 112 358999
Q ss_pred EecCCChh---hHH-HHHHhcccCCcEEEEecCC-HHHHHHHHHHHhhcC
Q 021550 186 FLDLPQPW---LAI-PSAKKMLKQDGILCSFSPC-IEQVQRSCESLRLNF 230 (311)
Q Consensus 186 ~~d~~~~~---~~l-~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~~f 230 (311)
+++.|... ..+ ......||+|.+|+-.+-. .-....+.+.|+++-
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred hhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 98887332 233 5678899999988854321 123456788887753
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.8 Score=40.38 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=38.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 153 (311)
.-++.+++.|+++||-|.+|.......++. +..+|++||+||......+-++
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~---~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLLA---GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHhc---CCceEEEEeCCHHHHHHHHHHH
Confidence 456889999999999998766554444433 3589999999998776655443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=87.59 E-value=13 Score=33.70 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
|..+|..+|+|. |....+.+...+-...++.+|++++.++ .+........+.....+.. +|.. .+ ...|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~-----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VT-----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--Hh-----CCCCE
Confidence 456899999987 6655555544444467999999886543 2333222221211123332 3432 12 45799
Q ss_pred EEecCCCh------------------hhHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 185 IFLDLPQP------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 185 V~~d~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
|++....+ .++.+.+.+. .|.|.+++++-..+.+.
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t 127 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMT 127 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHH
Confidence 88743211 0223333333 68898887765444333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=4.8 Score=37.68 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=27.1
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
+|-.+|.|. |..+..++.. +..|+++|++++.++.+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 577788885 5544433332 4789999999999888775
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=6.9 Score=33.53 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHE-QRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~-~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~ 178 (311)
.+.++|..|+.. .++..+++.+ ..+.+|+++..+. ...+.....+...+ ..+.+...|+.+.. + .. ..
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899888644 4555555443 2346788877654 33443333333323 23777888887511 1 00 00
Q ss_pred CCCccEEEecCCC------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+||.+... +..+++.+.+.++.+|.+++.+.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 1357888765421 12456677777766777776543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=11 Score=35.53 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred CEEEEEcccc-cHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC------------CCCCCC
Q 021550 110 CLVLESGTGS-GSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI------------QGQGFP 175 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~------------~~~~~~ 175 (311)
.+|..+|.|. |... ..|++. +.+|+++|++++.++..+. |... +...+. ....-.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~~~~v~~l~~-----g~~~---~~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR---QKQVIGVDINQHAVDTINR-----GEIH---IVEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC---CCEEEEEeCCHHHHHHHHC-----CCCC---cCCCCHHHHHHHHhhcCceeeecc
Confidence 4788899986 3333 223333 4789999999998775321 1110 000000 000000
Q ss_pred CcCCCCccEEEecCCCh---------h---hHHHHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 176 DEFSGLADSIFLDLPQP---------W---LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~---------~---~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
. ...|+||+..|.| . .+++.+.+.|++|..++..+.. .....++...+.+
T Consensus 73 ~---~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 73 P---EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred c---ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 3579999887765 1 3456677888887777655442 2344445444443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=4.3 Score=39.90 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=52.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhc-----CC--CCcEEEEEecCCCC-
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT-----GV--SSFVTVGVRDIQGQ- 172 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~--~~~v~~~~~D~~~~- 172 (311)
..++...|.+||..|+. |.++..+++++ ..+.+|++++.+.+.++.....+... +. ...+.++.+|+.+.
T Consensus 73 ~~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 73 KELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred cccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 34566788889988864 55566655544 23568999998887765544433221 11 12378889999752
Q ss_pred CCCCcCCCCccEEEecCC
Q 021550 173 GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~ 190 (311)
.+... -+.+|+||++..
T Consensus 152 sI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 152 QIGPA-LGNASVVICCIG 168 (576)
T ss_pred HHHHH-hcCCCEEEEccc
Confidence 11111 146899887543
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.07 E-value=3.1 Score=37.19 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=75.2
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~ 176 (311)
+.+...++.|++|+.-|+ |. |.++.++|+.+ .++|++.=-|++.....+.. .|.++.++.... |... .+..
T Consensus 145 f~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~--Gc~VVGsaGS~EKv~ll~~~---~G~d~afNYK~e~~~~~-aL~r 218 (343)
T KOG1196|consen 145 FYEICSPKKGETVFVSAASGAVGQLVGQFAKLM--GCYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLSA-ALKR 218 (343)
T ss_pred HHHhcCCCCCCEEEEeeccchhHHHHHHHHHhc--CCEEEEecCChhhhhhhHhc---cCCccceeccCccCHHH-HHHH
Confidence 446677888998877665 44 89999999997 46999999999888877753 566655666655 4332 2222
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..++.+|+-|-|.... .++.+...|+..|++++.
T Consensus 219 ~~P~GIDiYfeNVGG~--~lDavl~nM~~~gri~~C 252 (343)
T KOG1196|consen 219 CFPEGIDIYFENVGGK--MLDAVLLNMNLHGRIAVC 252 (343)
T ss_pred hCCCcceEEEeccCcH--HHHHHHHhhhhccceEee
Confidence 2226799988777654 778888889999988864
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.03 E-value=12 Score=34.04 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.+.+|..+|+|. |....+++...+-...+..+|++++.++-...-+. .......+.+...|.. .+ ...|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~-----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DC-----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--Hh-----CCCCE
Confidence 3457999999987 66655555443333479999998876543332222 2111122444433322 12 45799
Q ss_pred EEecCCCh--------------hhHHHHHHhcc---cCCcEEEEecCCHHHHHH
Q 021550 185 IFLDLPQP--------------WLAIPSAKKML---KQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 185 V~~d~~~~--------------~~~l~~~~~~L---kpgG~lv~~~~~~~~~~~ 221 (311)
|++....+ ...+.++...+ .|.|.+++++...+.+..
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~ 130 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY 130 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH
Confidence 88643221 12344443333 378888877654444333
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=7.3 Score=33.59 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=47.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.+.++|..|+++| ++..+++.+ ..+.+|+.++.+++.++...+.+...+ ..+.+...|+.+.. + .. ...
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678999997654 333444333 225689999998887776666555443 23777888886511 1 00 001
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 85 g~id~lv~~a 94 (253)
T PRK05867 85 GGIDIAVCNA 94 (253)
T ss_pred CCCCEEEECC
Confidence 4689988643
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=86.84 E-value=2.5 Score=29.61 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHhcCCCCCCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFH 142 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~ 142 (311)
+-..-.+...++||.+|+-+|+ ++..++..++.++..+++-+.
T Consensus 30 vk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 30 VKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3333344445899999999997 666677777667777777553
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=86.82 E-value=2.8 Score=36.82 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=51.8
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh--hhHHHHHHh
Q 021550 124 TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--WLAIPSAKK 201 (311)
Q Consensus 124 ~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~--~~~l~~~~~ 201 (311)
..|.+. ++..+|+++|.++..++.|.+ .|+.. -...+. ..+ ..+|+||+..|-. ..+++++..
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~----~g~~~---~~~~~~--~~~-----~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALE----LGIID---EASTDI--EAV-----EDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHH----TTSSS---EEESHH--HHG-----GCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHH----CCCee---eccCCH--hHh-----cCCCEEEEcCCHHHHHHHHHHhhh
Confidence 334443 557899999999999888764 35433 122221 112 3479999988743 467888899
Q ss_pred cccCCcEEEEecCCHHHHHHHHHHH
Q 021550 202 MLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 202 ~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.+++|+.+.=.+.....+...++..
T Consensus 68 ~~~~~~iv~Dv~SvK~~~~~~~~~~ 92 (258)
T PF02153_consen 68 YLKPGAIVTDVGSVKAPIVEAMERL 92 (258)
T ss_dssp GS-TTSEEEE--S-CHHHHHHHHHH
T ss_pred hcCCCcEEEEeCCCCHHHHHHHHHh
Confidence 9999998886666655544444333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.76 E-value=8.6 Score=34.24 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=53.3
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---CcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+|+.+|+|. |......+... +..|+.++.+++.++..++ .++. ..... ..... ....+ . ..+|+||
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~-~~~~~-~-~~~d~vi 71 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAA-DDPAE-L-GPQDLVI 71 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCC-CChhH-c-CCCCEEE
Confidence 688999987 44333333332 3689999987776665543 2321 10100 00001 11111 1 4689999
Q ss_pred ecCCC--hhhHHHHHHhcccCCcEEEEecCCH
Q 021550 187 LDLPQ--PWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 187 ~d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+..+. ...+++.+...+.++..++......
T Consensus 72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred EecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 87653 3467777878887777777654433
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.74 E-value=1.6 Score=40.72 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=49.1
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V~~ 187 (311)
.+||.+|||. |...++.+.+- .+..|+..|.+.+.++.+..... . .++..+.|+.+. .+.+.. ..+|+||.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~~----~-~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELIG----G-KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhcc----c-cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 5799999987 66655554442 34899999999988877765432 1 388888888752 121111 34699886
Q ss_pred cCC
Q 021550 188 DLP 190 (311)
Q Consensus 188 d~~ 190 (311)
..|
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 554
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.73 E-value=9.4 Score=34.54 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=61.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC----CC-CCCCCcCCCCcc
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG-QGFPDEFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~----~~-~~~~~~~~~~~D 183 (311)
.+|+.+|+|. |.+....+... +..+.+...++.++..++ .|+ .+...+- .. ..........+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~---g~~V~~~~R~~~~~~l~~----~GL----~i~~~~~~~~~~~~~~~~~~~~~~~D 69 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA---GHDVTLLVRSRRLEALKK----KGL----RIEDEGGNFTTPVVAATDAEALGPAD 69 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC---CCeEEEEecHHHHHHHHh----CCe----EEecCCCccccccccccChhhcCCCC
Confidence 3789999998 55444444442 245555555555555554 243 2221111 00 011111115799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+||+..- +..++++.+.+.+++...+++...-....+.+.+..
T Consensus 70 lviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~ 114 (307)
T COG1893 70 LVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL 114 (307)
T ss_pred EEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhC
Confidence 9997654 556789999999999999888766666555444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 311 | ||||
| 3mb5_A | 255 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 4e-20 | ||
| 3lhd_C | 253 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 4e-20 | ||
| 1o54_A | 277 | Crystal Structure Of Sam-Dependent O-Methyltransfer | 5e-19 | ||
| 1i9g_A | 280 | Crystal Structure Of An Adomet Dependent Methyltran | 1e-12 | ||
| 2pwy_A | 258 | Crystal Structure Of A M1a58 Trna Methyltransferase | 1e-07 | ||
| 2yvl_A | 248 | Crystal Structure Of Trna (m1a58) Methyltransferase | 5e-07 | ||
| 2b25_A | 336 | Human Putative Trna(1-Methyladenosine)methyltransfe | 1e-05 |
| >pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255 | Back alignment and structure |
|
| >pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253 | Back alignment and structure |
|
| >pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase (Tm0748) From Thermotoga Maritima At 1.65 A Resolution Length = 277 | Back alignment and structure |
|
| >pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase Length = 280 | Back alignment and structure |
|
| >pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase Length = 258 | Back alignment and structure |
|
| >pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi From Aquifex Aeolicus Length = 248 | Back alignment and structure |
|
| >pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase Length = 336 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 268 bits (685), Expect = 6e-89
Identities = 66/326 (20%), Positives = 130/326 (39%), Gaps = 31/326 (9%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKA---VKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNK 67
S R + G+L++ K ++ + +GA +GK G ++ S+
Sbjct: 5 SRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSF 64
Query: 68 GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLA 127
G L P E + +++ T I + DI+ ++ +++ PG VLE+G+GSG ++ L+
Sbjct: 65 GKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLS 124
Query: 128 RAVAPTGHVYTFDFHEQRAASAREDFER----------TGVSSFVTVGVRDIQGQGFPDE 177
+AV G V +F+ + A+++++ V +DI G +
Sbjct: 125 KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184
Query: 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR---LNFTDIR 234
S D++ LD+ P + +P LK G+ + I QV + +R L + +
Sbjct: 185 -SLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEK 243
Query: 235 TFEILLRTYEIR-------------QWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKEN 281
E+++R + + + + + ++ + Q +
Sbjct: 244 ISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDF 303
Query: 282 PNNS-TVMARPNGEARGHTGYLTFAR 306
P S +ARP GHT +L R
Sbjct: 304 PYGSFPYVARPVHWQPGHTAFLVKLR 329
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 247 bits (631), Expect = 2e-81
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 44/297 (14%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
+K GD V++ + V + ++ G ++ K G ++ ++ G
Sbjct: 15 KVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKK 74
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
Y+L P+ + + RTQI+Y D SF+ M L++ G ++++G GSG++ LARAV
Sbjct: 75 GYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
+G V+ ++ E+ A A + + G+ VT+ VRDI + D++FLD+P
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV----DALFLDVP 190
Query: 191 QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWR 249
PW I + LK G + P QVQ + + L+ L F I +E L R Y+
Sbjct: 191 DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPV--- 247
Query: 250 ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
RP HT Y+ FA
Sbjct: 248 ------------------------------------PERLRPVDRMVAHTAYMIFAT 268
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 240 bits (613), Expect = 4e-79
Identities = 82/294 (27%), Positives = 123/294 (41%), Gaps = 47/294 (15%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
I+EGD V++ + + V F G K + IG+ FG + S+KG +L
Sbjct: 2 IREGDKVVLVDPRGKRYLITV-SKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
P + + QI++ D + ++ Y + PG ++E+G GSG+LT LA V P G
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V +++ E A A E+ + G VT+ ++DI + D + LDLPQP
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV----DHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR---LNFTDIRTFEILLRTYEIRQWRADC 252
+ A K LK G +++PC QV R E LR F RT +L+ E++
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVK------ 230
Query: 253 GQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
RP A HTGY+TFAR
Sbjct: 231 ---------------------------------KECMRPRTTALVHTGYITFAR 251
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 239 bits (610), Expect = 2e-78
Identities = 71/300 (23%), Positives = 115/300 (38%), Gaps = 46/300 (15%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
S T G+ V + + + + + F G+ H IG GS+V S+ G
Sbjct: 2 SATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGAL 61
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
+L P + + + Q++Y D + ++ ++ PG VLE+G GSG+LT SL RAV
Sbjct: 62 FLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAV 121
Query: 131 APTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
P G V +++ A AR + + V D+ PD D LD
Sbjct: 122 GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS---VDRAVLD 178
Query: 189 LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEIR 246
+ PW + + ++L G+L + + Q+ R E+LR +T+ R +E L R + +
Sbjct: 179 MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVV 238
Query: 247 QWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
RP RGHT +L R
Sbjct: 239 GLA---------------------------------------VRPQHSMRGHTAFLVATR 259
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 3e-77
Identities = 54/292 (18%), Positives = 98/292 (33%), Gaps = 47/292 (16%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
+K VI+ + K + ++ G H G +
Sbjct: 21 MKRSSPVILVSEDEYGKFDE---STNSILVKGKMHHLGISRVIEPGDELIVSGKSFIVSD 77
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
+P + V+ TQI+ D S++IM L PG +LE G GSG++++ + A+ G
Sbjct: 78 FSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT 137
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
+ + E A ++ V DI + D++ D+P PW
Sbjct: 138 LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY----DAVIADIPDPWNH 193
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWRADCGQ 254
+ M+K + + P +Q +++ SL + T E++ R +R+
Sbjct: 194 VQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGA----- 248
Query: 255 GTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
RP + HT ++TFA
Sbjct: 249 ----------------------------------TRPASDDLTHTAFITFAI 266
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 3e-76
Identities = 66/291 (22%), Positives = 109/291 (37%), Gaps = 50/291 (17%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
KEG+ V++ K+ + + K + IGKP G + F
Sbjct: 4 FKEGEYVLIRFGEK-KFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKING----FEVYRP 58
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
E+ L +TQI+Y D ++ + L L VLE GTGSG+L L+ G
Sbjct: 59 TLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GE 115
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V+TF+ E+ +A+++ ++ + V D + P+ G+ + F+D+ +PW
Sbjct: 116 VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE---GIFHAAFVDVREPWHY 172
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRADCGQG 255
+ K L + + P QV + ES+ F ++ EIL R Y+
Sbjct: 173 LEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVVEILHRHYKTI--------- 223
Query: 256 TGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
+ RP + HT YL F R
Sbjct: 224 ------------------------------SERFRPEDQMVAHTAYLVFGR 244
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 228 bits (581), Expect = 3e-74
Identities = 68/294 (23%), Positives = 108/294 (36%), Gaps = 44/294 (14%)
Query: 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYL 73
G +++ +R V + F + G+ H + G +V ++ G + +
Sbjct: 3 HMAWPGP-LLLKDRKGRAYLVFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSV 61
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
PT E + L + Y D S ++ L+L PG VLE+GTGSG LT LARAV
Sbjct: 62 HRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEK 121
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +++ A A + V + ++ + D + LDL +PW
Sbjct: 122 GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAA---YDGVALDLMEPW 178
Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIRQWRADC 252
+ A LK D L ++ P I QV + + F R E+ R +E+R
Sbjct: 179 KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGWREWEVR------ 232
Query: 253 GQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
+A P + GHT +L R
Sbjct: 233 ---------------------------------LPVAHPRFQQVGHTAFLVALR 253
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-13
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160
+ + + G V+++ G+G+ T LA V G V+ FD ++ A+ + +
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74
Query: 161 FVTVGVRDIQGQGFPDEFSGLADSIFLDL------------PQPWLAIPSAKKMLKQDGI 208
VT+ Q + A L A+ A ++L GI
Sbjct: 75 RVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGI 134
Query: 209 LC 210
+
Sbjct: 135 IT 136
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-11
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
+ L G L+ + G GSGS++ G T + R + +++ + G+S
Sbjct: 47 TLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYGLS 103
Query: 160 SFVTVGVRDIQGQGFPDEFSGL--ADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
+ +QG P + L +++F+ + L +
Sbjct: 104 PRMRA----VQGT-APAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRI 150
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 11/147 (7%)
Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162
++ +++ G G G L L + D E A ARE F
Sbjct: 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--S 74
Query: 163 TVGVRDIQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCIE 217
D D++ D + P + +K+ G + F P
Sbjct: 75 EFLEGDATEIELNDKY----DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWI 130
Query: 218 QVQRSCESLRLNFTDIRTFEILLRTYE 244
S ++ +L + +E
Sbjct: 131 SNMASYLLDGEKQSEFIQLGVLQKLFE 157
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-11
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 21/114 (18%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L+L PG VLE GTG G A V G V + + + A A + G + V
Sbjct: 73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VI 131
Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
V V D G G+ + D I+ +P+P + + LK G L
Sbjct: 132 VIVGD--GTLGYEPLAPY----DRIYTTAAGPKIPEPLI------RQLKDGGKL 173
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-11
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
+ L G VLE G G+G ++R V G V + ++ + A+ + ER G+ + V
Sbjct: 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VI 129
Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
D G G P+ + D IF+ ++P+ W LK+ G +
Sbjct: 130 FVCGD--GYYGVPEFSPY----DVIFVTVGVDEVPETWFT------QLKEGGRV 171
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
I L P + + G GSGS+ R+ P F+ E+R + GVS
Sbjct: 17 AISALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLGVS 75
Query: 160 SFVTVGVRDIQGQGFPDEFSGL---ADSIFLDLPQPWLAI-PSAKKMLKQDGILC 210
+Q G P F + D IF+ + +A K L G L
Sbjct: 76 -----DRIAVQQ-GAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV 124
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-09
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 20/115 (17%)
Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
+L G L+ G+GSG LT AR V TG V D ++ + + + + +
Sbjct: 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133
Query: 165 GVRDIQG---QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
V+ + G G+ +E + D+I + +PQ + LK G L
Sbjct: 134 RVQLVVGDGRMGYAEEAPY----DAIHVGAAAPVVPQALI------DQLKPGGRL 178
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 31/160 (19%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
++ E + ++ G G+G +T LA VY D + + ++ + +R G+
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHGLG 81
Query: 160 SFVTVGVRDIQGQGFPDEFSGL--ADSIFL---DLPQPWLAIPSAKKMLKQDGILCSFSP 214
VT+ ++G P+ + D + + + K LK G +
Sbjct: 82 DNVTL----MEGD-APEALCKIPDIDIAVVGGSGGELQEI-LRIIKDKLKPGGRII---- 131
Query: 215 CIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRADCGQ 254
+ + T + + + +
Sbjct: 132 -------------VTAILLETKFEAMECLRDLGFDVNITE 158
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 8/158 (5%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+ PG VLE+G G G+ T LA+ P + + D + ARE+ E+ G
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG 85
Query: 158 VSSFVTVGVRDIQGQGFPDE-FSG-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215
+ + V +I F D F + L P A+ S KK+LK G +
Sbjct: 86 IKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTIT----V 140
Query: 216 IEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRADCG 253
IE SC I + L+R + + G
Sbjct: 141 IEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVG 178
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-09
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
A + ++ L + G +L G SG+ + ++ + P G +Y +F + R+
Sbjct: 64 AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR---VMRDLLT 120
Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
+ + D + D ++ D+ QP + + +A+ L+ G +
Sbjct: 121 VVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML 179
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 28/159 (17%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
+ L L ++ + G GS S++ + P G ++ + + Q R++ ++
Sbjct: 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVAR 90
Query: 160 SFVTVGVRDIQGQGFPDEFSGLA--DSIFLDLPQPWLA--IPSAKKMLKQDGILCSFSPC 215
V ++ P+ L D +F+ L I + + LK +G++
Sbjct: 91 -----NVTLVEAF-APEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV----- 139
Query: 216 IEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRADCGQ 254
LN + T + E + +
Sbjct: 140 ------------LNAVTLDTLTKAVEFLEDHGYMVEVAC 166
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
V+ L G VL+ GTG+G L++ V G VY D E+ A E + G+
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
+ + + PD D IF+ +L +P + K++ K L
Sbjct: 89 NVEVL-KSEENKIPLPDNT---VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYL 139
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-08
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
I L L +V++ G GSG +T +A+ VY D+ + +++ + +
Sbjct: 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIK 83
Query: 160 SFVTVGVRDIQGQGFPDEFSGL-ADSIFL 187
+ I+G+ D L + F+
Sbjct: 84 -----NCQIIKGR-AEDVLDKLEFNKAFI 106
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 4e-08
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
L PGC+V G S +L + P + D+ + A ++ +T+
Sbjct: 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITL 174
Query: 165 GVRDIQGQGFPDEF---SGLADSIFLDLPQPWLAI-PSAKKMLKQDGILC 210
+D + + + +I+ + + LK G L
Sbjct: 175 HRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L PG +LE GTGSG ++ V VYT + + A+ + ER GV + V
Sbjct: 87 ANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLERAGVKN-VH 143
Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
V + D G +GFP + + D I + +P+P + + LK G L
Sbjct: 144 VILGD--GSKGFPPKAPY----DVIIVTAGAPKIPEPLI------EQLKIGGKL 185
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-08
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSS 160
L PG ++ G+GSG LT +A + +V + + + E+ +R
Sbjct: 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136
Query: 161 FVTVGVRDIQGQGFPDEFSGLA-----DSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
+ I + D+I + +LP+ + +L ++G L
Sbjct: 137 LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV------DLLAENGKL 189
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-08
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
LEL P VLE GTGSG T LA V HV + + + AR + + + V+
Sbjct: 73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHN-VS 128
Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
D G QG+ F D+I + ++P + L + GIL
Sbjct: 129 TRHGD--GWQGWQARAPF----DAIIVTAAPPEIPTALM------TQLDEGGIL 170
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
+ PG VL G SG+ + ++ V G ++ +F + RE +
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR---VLRELVPIVEERRNIV 125
Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA---IPSAKKMLKQDG--ILCSFSPCI-- 216
+ D D IF D+ QP A I +A+ LK+ G ++ S I
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV 185
Query: 217 ----EQVQRSCESLRLNFTDIRTFEILLRTYE 244
EQV R E + ++ + L YE
Sbjct: 186 TKEPEQVFREVERELSEYFEVI-ERLNLEPYE 216
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171
+LE GT G T LAR ++ G V T + E+ A AR + ER ++ V V G
Sbjct: 62 ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV----RTG 117
Query: 172 ------QGFPDEFSGLADSIFLD 188
Q +E D IF+D
Sbjct: 118 LALDSLQQIENEKYEPFDFIFID 140
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
L L+ + G G+G T LA V G V DF + ++G+ + VT
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTG 100
Query: 165 GVRDIQGQGFPDE-FSGLADSI-------FLDLPQPWLAIPSAKKMLKQDGIL 209
V + F +E D I + + + +K LK+ G L
Sbjct: 101 IVGSMDDLPFRNEEL----DLIWSEGAIYNIGFER---GLNEWRKYLKKGGYL 146
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-07
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRA 146
Q A + ++ PG +LE G G G L+ LA V +GHV D
Sbjct: 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY 81
Query: 147 AS------AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186
+ A + +TV D+ +AD F
Sbjct: 82 GAPLTLGQAWNHLLAGPLGDRLTV----HFNTNLSDDLGPIADQHF 123
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 15/126 (11%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
+ + G VL+ G G+G ++ V G V D + + AR+ E
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133
Query: 159 SSFVTVG---VRDIQGQ----------GFPDEF--SGLADSIFLDLPQPWLAIPSAKKML 203
F + VR ++G G PD +++ + ++L
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVL 193
Query: 204 KQDGIL 209
+ G L
Sbjct: 194 RDGGEL 199
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 36/155 (23%)
Query: 93 YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
Y + S V PG VL+ G +T LA + G + T + +RA
Sbjct: 88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS 147
Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP--------------QPW--- 193
E+ ER GVS+ V FSG D I +D P + W
Sbjct: 148 ENIERWGVSN-AIVTNHA--PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEE 204
Query: 194 ----LA------IPSAKKMLKQDGIL----CSFSP 214
+ SA KMLK G L C+F+P
Sbjct: 205 SPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-07
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
V+ G G G + ARA++ + V D AR G+ V +
Sbjct: 60 VVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVEL 112
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 26/114 (22%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L+L G VLE GTG G T +A V V + + +E+ A + +
Sbjct: 66 LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIK 119
Query: 164 VGVRDIQG-QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
+ + D G G+ +E + D + + L + LK+ GI+
Sbjct: 120 LILGD--GTLGYEEEKPY----DRVVVWATAPTLLCKPY------EQLKEGGIM 161
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 8e-07
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTG-----HVYTFDFHEQRAASAREDFERTGVSS 160
L PG +L+ G+GSG LT R + G + + + ++ + S
Sbjct: 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 141
Query: 161 FVTVGVRDIQG---QGFPDE--FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209
+ + ++G +G+P + ++I + D P + L G L
Sbjct: 142 LDSGQLLIVEGDGRKGYPPNAPY----NAIHVGAAAPDTPTELI------NQLASGGRL 190
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV----- 166
VLE G G +AR + P + T + + AA ++ G+ VT+
Sbjct: 62 VLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121
Query: 167 --RDIQGQGFPDEFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILC 210
++ + D D +FLD P + +L++ +L
Sbjct: 122 LIPQLKKKYDVDTL----DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLL 167
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 9e-07
Identities = 36/155 (23%), Positives = 53/155 (34%), Gaps = 37/155 (23%)
Query: 93 YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
YI + S + + L+ PG +V + G T+ LA+ + G +Y FD E R R
Sbjct: 101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160
Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP--------------QPW--- 193
+ R GV + V + E + D I LD P
Sbjct: 161 LNLSRLGVLN-VILFHSS--SLHIG-ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMD 216
Query: 194 ----LA------IPSAKKMLKQDGIL----CSFSP 214
+ ++LK GIL CS P
Sbjct: 217 DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 251
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
+E G +G + A A+ G + D +++ ++ GV +
Sbjct: 83 TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142
Query: 169 -IQGQGFPDEFSGLADSIFLD 188
+ ++ G D IF+D
Sbjct: 143 VLDEMIKDEKNHGSYDFIFVD 163
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 40/181 (22%)
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTT 124
+ GF Y P + YI + S V + L+ PG VL+ G TT
Sbjct: 61 QEGFYYPEEARP---GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 125 SLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184
LA + G + + +R E+ ER G VT + + F
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQA----PPRALAEAFGTYFHR 173
Query: 185 IFLDLP--------------QPW-------LA------IPSAKKMLKQDGIL----CSFS 213
+ LD P + W +A + A ++L G+L C+F+
Sbjct: 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233
Query: 214 P 214
P
Sbjct: 234 P 234
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
+LE GT G T +AR + G + T + A ARE+ + GV VT+
Sbjct: 67 ILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTL 119
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
++E GT +G + A A+ G + D E+ AR+ ++ G+ + + +
Sbjct: 64 IIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL 116
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
VLE G G ++A + P G + D A A++ +++ GV+ +++ +
Sbjct: 76 VLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135
Query: 169 ----IQGQGFPDEFSGLADSIFLD 188
+ EF D IF+D
Sbjct: 136 TLEQLTQGKPLPEF----DLIFID 155
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
+E G +G A ++ G + DF + + GV + D
Sbjct: 74 TIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133
Query: 169 -IQGQGFPDEFSGLADSIFLD 188
+ E G D F+D
Sbjct: 134 ALDNLLQGQESEGSYDFGFVD 154
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 17/123 (13%)
Query: 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
A V EL + + G G+G T LA V G + D E+
Sbjct: 33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAV 90
Query: 155 RTGVSSFVTVGVRDIQGQGFPDE-FSGLADSIF-------LDLPQPWLAIPSAKKMLKQD 206
+ + V + F +E D I+ + + + K LK+
Sbjct: 91 KANCADRVKGITGSMDNLPFQNEEL----DLIWSEGAIYNIGFER---GMNEWSKYLKKG 143
Query: 207 GIL 209
G +
Sbjct: 144 GFI 146
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
V++ GT +G ++ A+ G + T D E+ A A+E +E+ G+S + +
Sbjct: 68 VIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGL 120
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160
+ +G + + +A + D + A+ F G S
Sbjct: 60 AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSP 108
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 34/126 (26%)
Query: 120 GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179
GS TT ++ + G + +F R + R G+S+ V + D G+ F
Sbjct: 129 GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFD--GRVFGAAVP 185
Query: 180 GLADSIFLDLP--------------QPW-------LA------IPSAKKMLKQDGIL--- 209
+ D+I LD P + W +A I SA L+ G L
Sbjct: 186 EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 245
Query: 210 -CSFSP 214
C+ +
Sbjct: 246 TCTLNQ 251
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-06
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFV 162
+ G VL G SG+ + ++ + G Y +F + + R +
Sbjct: 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNI---- 127
Query: 163 TVGVRDIQGQGFPDEFSGL---ADSIFLDLPQPWLA---IPSAKKMLKQDG--ILCSFSP 214
+ FP + + D +++D+ QP I +AK LK +G +L +
Sbjct: 128 ---FPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR 184
Query: 215 CIE 217
I+
Sbjct: 185 SID 187
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 37/155 (23%)
Query: 93 YIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
IS + L +L+ G TT LA+ + G + + + R + +
Sbjct: 66 MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125
Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEF---SGLADSIFLDLP----------------- 190
+ R GV + + D + + D D I LD P
Sbjct: 126 SNINRMGVLN-TIIINAD--MRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEED 182
Query: 191 -------QPWLAIPSAKKMLKQDGIL----CSFSP 214
Q L I +LK+DG L CS
Sbjct: 183 IKYCSLRQKEL-IDIGIDLLKKDGELVYSTCSMEV 216
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-06
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSF 161
+ + PG VL G SG+ + ++ V P G VY +F + + RT +
Sbjct: 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPV 131
Query: 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
+ D + + D IF D+ QP + +A L+ G
Sbjct: 132 IE----DARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV 179
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--- 168
VLE GT +G +++ A+ G V T D +E A + + + +
Sbjct: 64 VLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123
Query: 169 ----IQGQGFPDEFSGLADSIFLD 188
+ +G +F D IF+D
Sbjct: 124 TLHSLLNEGGEHQF----DFIFID 143
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 23/156 (14%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
++ + VLE G G+G+LT L A VY + + A+E +
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKE--- 90
Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIF-------LDLPQPWLAIPSAKKMLKQDGILCSF 212
++ D P D+I L + +AI ++L + G +
Sbjct: 91 --FSITEGDFLSFEVPTSI----DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV-- 142
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQW 248
+ + ++ + +++
Sbjct: 143 --FADTIFADQDAYDKTVEAAKQRGFHQLANDLQTE 176
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV---RD 168
L+ GT +G +LA A+ G V T + Q R + + + + + +
Sbjct: 73 ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132
Query: 169 IQGQGFPDEFSGLADSIFLD 188
+ +G D +D
Sbjct: 133 TLDELLAAGEAGTFDVAVVD 152
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 48 AFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPEL-WTLVLSHRTQI----------LYIAD 96
FK + + S + + P + LV +T + L + D
Sbjct: 29 YFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQD 88
Query: 97 IS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
+ M L+ PG V+++ G+ T+ LA + G ++ FD +R AS
Sbjct: 89 RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA 148
Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190
R GVS + D D I LD
Sbjct: 149 RAGVSC-CELAEEDFLAVSPSDPRYHEVHYILLDPS 183
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-06
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165
+ VL+ G G G T L+R D E +E E + SF+ G
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDL-SFI-KG 105
Query: 166 VRDIQGQGFPDE-FSG-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223
D+ F +E F +A + +P A+ K++LK DG CI + +
Sbjct: 106 --DLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYA-----CIAILGPTA 158
Query: 224 ESLRLNFTDIRTFEILLRTYEIRQWRA 250
+ ++ + +++ T ++
Sbjct: 159 KPRENSYPRLYGKDVVCNTMMPWEFEQ 185
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
+LE GT G +A+A+ P + + + E+R A + + G+ S + +
Sbjct: 58 ILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIEL 109
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-05
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 9/120 (7%)
Query: 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED 152
Y+ + G + G G LT L + V + A +R+
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILL-SHVYGMRVNVVEIEPDIAELSRKV 165
Query: 153 FERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL--PQPWLAIPSAKKMLKQDGILC 210
E GV V V D + D + + + + + + +
Sbjct: 166 IEGLGVDG-VNVITGDETVIDGLE-----FDVLMVAALAEPKRRVFRNIHRYVDTETRII 219
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVT 163
L +V+++ G+G+ T LA + VY FD EQ + G+ +
Sbjct: 20 LDDESIVVDATMGNGNDTAFLAG---LSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76
Query: 164 VGVRDI--------QGQGFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILC 210
G ++ + F + AD + P AI L+ G L
Sbjct: 77 DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 30/193 (15%), Positives = 45/193 (23%), Gaps = 18/193 (9%)
Query: 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165
L P VLE+G G G A +DF + AR +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLAR---ANAPHADVYEWN 99
Query: 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC--IEQVQRSC 223
+ P I P I ++ D P + +V
Sbjct: 100 GKG----ELPAGLGAPFGLIV-SRRGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERL 154
Query: 224 ESLRLNFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPN 283
++ + +L W+ R G
Sbjct: 155 AAVGWDIVAEDHVSVLAHAPTWEDWQMRGEF-----MGKLARRADWDAEATVRGMPYREE 209
Query: 284 NSTVMARPNGEAR 296
V+AR G AR
Sbjct: 210 RHLVLARQLGVAR 222
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
A I + + + +L G +G+ + +A +A G VY ++ + RE +
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPR---IMRELLD 116
Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILC 210
+ + D D I+ D+ QP + I +AK LK+ G
Sbjct: 117 ACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVT 163
L+++ G G G+ T +A+ + P + D +A E + + SF
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI 95
Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILC 210
D + G D I W SA L++DG +
Sbjct: 96 SSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIA 146
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 3e-05
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVS--SFVTV 164
+ ++ GTG G LA D ++ + + + G+S FV
Sbjct: 27 VHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA 85
Query: 165 GVRDIQGQGFPDEFSGLADSIFLDLPQP----WLAIPSA------KKMLKQDGILC 210
+ P E +ADSI + P ++ P+ + K++
Sbjct: 86 AAESL-----PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE 136
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 35/178 (19%), Positives = 54/178 (30%), Gaps = 26/178 (14%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTG 157
F++ +P +L G G LA G+ V D A A++ + G
Sbjct: 20 FLVSVANQIPQGKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKG 75
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL--AIPSAKKMLKQDGILCSFSPC 215
V +T ++ + SIF LP P + LK G+
Sbjct: 76 VK--ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133
Query: 216 IEQVQR------------SCESLRLNFTDIRTFEILLRTYEIRQWRADCGQGTGGGSA 261
EQ+Q E+L+ L+ R D G G +A
Sbjct: 134 PEQLQYNTGGPKDLDLLPKLETLQSELPS---LNWLIANNLERNL--DEGAYHQGKAA 186
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 20/123 (16%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
+ + + + ++++ G G+G L +Y D + +E
Sbjct: 1 MSLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKE 57
Query: 152 DFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQD 206
F+ + + PD D I D+ I K++LK D
Sbjct: 58 KFDSV---------ITLSDPKEIPDNS---VDFILFANSFHDMDDKQHVISEVKRILKDD 105
Query: 207 GIL 209
G +
Sbjct: 106 GRV 108
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 92 LYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASA 149
+ + + + + L+ PG V++ G TT LA + G +Y FD + R
Sbjct: 241 IIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRL 300
Query: 150 REDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFLDLP---------QP---WLAI 196
++ +R G+ V V+D + P+ +AD + LD P P W
Sbjct: 301 KDFVKRMGIKI-VKPLVKD--ARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLR 357
Query: 197 P---------------SAKKMLKQDGIL----CSFSPC--IEQVQR 221
SA +++K G L CS + ++
Sbjct: 358 EDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRW 403
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
+I + G ++ G+G G+L+ +LA+ + DF + A ++ +
Sbjct: 35 NIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANL 91
Query: 159 SSFVTVGVRDIQGQGFPDE 177
+ + + D+ D
Sbjct: 92 NDRIQIVQGDVHNIPIEDN 110
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
+LE GT G + A +++ HV T + +E A+++ + V +
Sbjct: 75 ILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLATYHFENQVRI 126
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
L + PG +L+ G+GSG + + AR D A A+ E GVS V
Sbjct: 32 LRMKPGTRILDLGSGSGEMLCTWAR--DHGITGTGIDMSSLFTAQAKRRAEELGVSERVH 89
Query: 164 VGVRDIQGQGFPDEF 178
D G ++
Sbjct: 90 FIHNDAAGYVANEKC 104
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150
+ Y +++V+ +E PG + + G G+G+ T LA TG D E+ A+
Sbjct: 18 VPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADHYEVTG----VDLSEEMLEIAQ 71
Query: 151 EDFERTGVSSFVTVGVRDIQGQGFPDEFSG---LADSI--FLDLPQPWLAIPSAKKMLKQ 205
E T V V+D++ P+ L DS+ SA ++L
Sbjct: 72 EKAMETNRH--VDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTD 129
Query: 206 DGILC 210
G L
Sbjct: 130 GGKLL 134
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 6e-04
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S V+ +++V L+ G G+G + LA V +D + A+
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIEN 78
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSI---FLDLPQPWLAIPSAKKMLKQDGIL 209
+ + + V D+ F ++ + ++ FL+ I + ++ K G
Sbjct: 79 LDN-LHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 132
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 7e-04
Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 75/273 (27%)
Query: 16 IKEGDLVIVYERHDCMK---AVKVCQNSAFQNR--FGAFKHSDWIGKPFGSMVFSNKGGF 70
++ V++ K A+ VC + Q + F F W+ N
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLN-------LKNCNSP 195
Query: 71 VYLLAPTPELWT-LVLSHRTQILYIADISFVI----------MYLELVPGCL-VLESGTG 118
+L +L + + ++ + ++I I + + CL VL
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----- 250
Query: 119 SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-----DIQGQG 173
V F+ + + R V+ F++ D
Sbjct: 251 ---------LNVQNAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMT 297
Query: 174 F-PDE----FSGLADSIFLDLPQ------PWLAIPSAKKMLKQDGILCSFSPC-IEQVQR 221
PDE D DLP+ P + + ++ + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDG-------LATWDNWKH 349
Query: 222 -SCESLRLNFTDIRTFEILLRTYEIRQWRADCG 253
+C+ L T I + +L E R+
Sbjct: 350 VNCDKLT---TIIESSLNVLEPAEYRKMFDRLS 379
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 8e-04
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
P +++ G+G+ T L++ V D + A ++ +S +
Sbjct: 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANIS----YRLL 108
Query: 168 DIQGQGFPDEF-SGLADSI--------FLDLPQPWLAIPSAKKMLKQDGIL 209
D + S + D+ + + + L S + +L + G +
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 9e-04
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
+ +I E VL+ G G+G + + V D ++ A +
Sbjct: 8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQ 64
Query: 155 RTGVSSFVTVGVRDIQGQGFPDE 177
GV + V + FPD+
Sbjct: 65 EKGVEN-VRFQQGTAESLPFPDD 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 100.0 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 100.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 100.0 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 100.0 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 100.0 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 100.0 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.97 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.78 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.77 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.71 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.7 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.69 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.67 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.66 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.65 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.65 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.65 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.64 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.63 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.62 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.62 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.62 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.62 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.6 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.59 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.59 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.59 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.59 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.59 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.59 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.58 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.58 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.58 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.58 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.57 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.56 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.56 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.56 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.55 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.55 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.55 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.54 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.54 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.54 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.53 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.53 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.53 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.53 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.53 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.53 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.53 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.52 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.52 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.52 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.51 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.51 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.51 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.51 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.5 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.5 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.5 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.5 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.5 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.5 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.5 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.49 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.49 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.49 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.48 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.48 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.48 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.48 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.48 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.48 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.48 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.47 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.47 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.47 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.47 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.47 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.47 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.47 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.47 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.46 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.46 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.46 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.46 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.46 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.46 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.46 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.46 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.45 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.45 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.45 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.45 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.45 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.45 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.45 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.44 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.44 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.44 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.44 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.44 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.43 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.43 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.43 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.42 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.42 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.42 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.42 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.42 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.41 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.41 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.41 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.41 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.41 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.4 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.4 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.4 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.4 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.4 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.39 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.39 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.39 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.39 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.39 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.39 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.39 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.37 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.37 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.37 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.37 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.37 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.36 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.36 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.36 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.36 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.36 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.36 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.36 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.36 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.35 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.35 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.35 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.35 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.34 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.34 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.33 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.33 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.33 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.33 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.32 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.32 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.32 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.32 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.31 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.31 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.31 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.31 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.3 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.29 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.29 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.29 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.29 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.28 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.27 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.27 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.27 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.26 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.26 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.24 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.24 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.24 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.24 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.23 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.22 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.21 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.2 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.2 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.19 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.17 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.17 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.17 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.16 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.16 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.16 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.14 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.13 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.12 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.12 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.12 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.11 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.11 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.1 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.09 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.08 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.07 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.06 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.05 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.05 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.05 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.02 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.02 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.0 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.99 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.99 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.97 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.94 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.93 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.92 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.92 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.92 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.89 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.88 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.86 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.84 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 98.81 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 98.81 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.8 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 98.79 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.78 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 98.78 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 98.76 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.75 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.74 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 98.74 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.73 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 98.72 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.72 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.71 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 98.7 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 98.7 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 98.69 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 98.68 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 98.67 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 98.66 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 98.66 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.66 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 98.65 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 98.62 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 98.6 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.59 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.58 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 98.58 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.57 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 98.57 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 98.57 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 98.56 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 98.55 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.53 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 98.53 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 98.52 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.51 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 98.51 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.5 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 98.48 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.48 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 98.47 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 98.44 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 98.39 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 98.35 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 98.35 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.33 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.33 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 98.32 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 98.3 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 98.27 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 98.24 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.11 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.01 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.96 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.95 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.83 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.65 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.62 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.56 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.55 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.44 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.41 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.37 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 97.37 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.35 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.35 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.33 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 97.32 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 97.31 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.3 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.3 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 97.26 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.23 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 97.22 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.17 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.15 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.15 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.13 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.06 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.05 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.05 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 97.01 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.98 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.95 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.93 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.91 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.85 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.75 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.67 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.66 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.59 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.56 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 96.54 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.45 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.34 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.29 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.27 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.22 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.17 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.14 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 95.89 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.57 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.49 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.45 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.25 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.07 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.04 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 94.9 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.72 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.48 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.41 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.25 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 94.22 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.11 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.1 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.08 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.03 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.85 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.73 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.65 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.37 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.09 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.08 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.75 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.59 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.52 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.51 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.48 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.39 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.38 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.37 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.3 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.1 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 92.09 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.07 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.99 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.96 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 91.88 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 91.86 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.69 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.66 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.58 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.57 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.52 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 91.5 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.47 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 91.33 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.28 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.22 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 91.02 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 90.97 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.94 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.86 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 90.74 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.73 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 90.69 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 90.68 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 90.49 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 90.47 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.41 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.36 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.34 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 90.28 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 90.2 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 90.19 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 90.1 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 90.07 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 90.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 89.9 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.88 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 89.83 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.79 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 89.72 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 89.7 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 89.65 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 89.62 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 89.6 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 89.48 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 89.47 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 89.43 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 89.37 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 89.36 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 89.21 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 89.11 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 89.06 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 89.02 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 89.02 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 88.82 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 88.8 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 88.6 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 88.44 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 88.4 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 88.37 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 88.32 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 88.28 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 88.26 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 88.24 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 88.22 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 88.18 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 88.17 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 88.14 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 88.1 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 88.07 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.98 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 87.91 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 87.89 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 87.85 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 87.84 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 87.8 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 87.52 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 87.47 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 87.42 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.32 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 87.28 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 87.27 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 87.26 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.18 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.07 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 87.03 |
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=300.63 Aligned_cols=250 Identities=33% Similarity=0.536 Sum_probs=234.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeec
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI 94 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 94 (311)
.|++||+|++..++++++.+.+..| +++|++|.+.+++++|+++|..+....+..++++.|+...+...+++..+.+++
T Consensus 1 ~~~~Gd~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~ig~~~g~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~ 79 (255)
T 3mb5_A 1 MIREGDKVVLVDPRGKRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHP 79 (255)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSS-EEEETTEEEEGGGGTTCCTTCEEECTTCCEEEEECCCHHHHHHHSCCCSCCCCH
T ss_pred CCCCCCEEEEEECCCcEEEEEecCC-eEecCCEEEEHHHhcCCCCCcEEEECCCcEEEEeCCCHHHHHhhCccccccccH
Confidence 4899999999999999999999888 999999999999999999999999999888899999987777788999999999
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.+...++..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++++...++.+++++..+|+. ..+
T Consensus 80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~ 158 (255)
T 3mb5_A 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGI 158 (255)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG-GCC
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh-hcc
Confidence 9999999999999999999999999999999999987889999999999999999999999998877999999998 446
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c--CceeeEEEeeceeeEEeeeecc
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTDIRTFEILLRTYEIRQWRAD 251 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~--f~~~~~~e~~~r~~~v~~~~~~ 251 (311)
++ ++||+|++++++++.+++++.+.|+|||.++++.++.++..++.+.+++ + |..++.+|.+.|.|++.+.+
T Consensus 159 ~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~~~~~~~-- 233 (255)
T 3mb5_A 159 EE---ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKEC-- 233 (255)
T ss_dssp CC---CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCCCCCEEEETTE--
T ss_pred CC---CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEeeeeeEecCCc--
Confidence 65 7899999999999999999999999999999999999999999999988 7 99999999999999999766
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEee
Q 021550 252 CGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLK 308 (311)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~ 308 (311)
+||.++|.+|||||++|||.
T Consensus 234 -------------------------------------~rp~~~~~~htg~l~~ark~ 253 (255)
T 3mb5_A 234 -------------------------------------MRPRTTALVHTGYITFARRI 253 (255)
T ss_dssp -------------------------------------EEECSCCCCCSCEEEEEEBC
T ss_pred -------------------------------------cCCCcccccccEEEEEEEEe
Confidence 69999999999999999985
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=280.91 Aligned_cols=255 Identities=27% Similarity=0.345 Sum_probs=230.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeee
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY 93 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 93 (311)
++|++||+|++...+++++.+.+.+|+++++++|.+.+++++|+++|..+....+..+++..|+...|...+.+..+.++
T Consensus 2 ~~~~~Gd~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T 2pwy_A 2 SHMAWPGPLLLKDRKGRAYLVFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTY 81 (258)
T ss_dssp ------CCEEEECTTCCEEEECCCTTCEECCTTCCEEHHHHHHHCTTCEEECSTTCEEEEECCCHHHHHHHSCCSSCCCC
T ss_pred CCCCCCCEEEEEECCCcEEEEEecCCCEEecCCceEEHHHhcCCCCCcEEEeCCCcEEEEeCCCHHHHhhcCcccccccc
Confidence 47999999999999999999899999999999999999999999999999988888888999999999988889999999
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~ 172 (311)
+.++..++..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++... +.. ++++..+|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~ 160 (258)
T 2pwy_A 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE-NVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC-CEEEEESCGGGC
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-CEEEEECchhhc
Confidence 999999999999999999999999999999999999877899999999999999999999887 743 499999999865
Q ss_pred CCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeecc
Q 021550 173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRAD 251 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~~ 251 (311)
.+++ +.||+|++++++++.++.++.++|+|||.++++.++.++..++.+.+++ +|..++.+|.+.+.|++.+.+
T Consensus 161 ~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~-- 235 (258)
T 2pwy_A 161 ELEE---AAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGWREWEVRLPV-- 235 (258)
T ss_dssp CCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEEETTE--
T ss_pred CCCC---CCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEeeeeEeeeccCc--
Confidence 4655 6899999999999999999999999999999999999999999999988 799999999999999999766
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeeccC
Q 021550 252 CGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKCLS 311 (311)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~~~ 311 (311)
+||...|.+|||||++|||..-|
T Consensus 236 -------------------------------------~rp~~~~~~~~~~l~~ark~~~s 258 (258)
T 2pwy_A 236 -------------------------------------AHPRFQQVGHTAFLVALRRWKGS 258 (258)
T ss_dssp -------------------------------------EEECSSCCCCCCEEEEEEECCCC
T ss_pred -------------------------------------cCCCCccCCcceEEEEEEecCCC
Confidence 69999999999999999998643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=283.36 Aligned_cols=256 Identities=28% Similarity=0.477 Sum_probs=235.7
Q ss_pred cCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCcee
Q 021550 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI 91 (311)
Q Consensus 12 ~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 91 (311)
+.+.|++||+|+|...+++++++.+..|..+++++|.+.+++++|+++|..+.+..+..++++.|++..|...+++..++
T Consensus 3 ~~~~~~~Gd~v~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ig~~~g~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 82 (280)
T 1i9g_A 3 ATGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQV 82 (280)
T ss_dssp -CCSCCTTCEEEEEETTCCEEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCC
T ss_pred CCCcCCCCCEEEEEECCCCEEEEEECCCCeEEcCCceEEHHHhcCCCCceEEEecCCcEEEEeCCCHHHHHhhcccccee
Confidence 45679999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-C-CCCcEEEEEecC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G-VSSFVTVGVRDI 169 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g-~~~~v~~~~~D~ 169 (311)
+++.+++.++..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++++... + +..++++..+|+
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 99999999999999999999999999999999999998877899999999999999999999887 5 334599999999
Q ss_pred CCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeeceeeEEee
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~~~v~~ 247 (311)
.+..++. +.||+|+++.++++.++.++.++|+|||.++++.++.+++.++.+.+++ +|..++.++.+.+.|++..
T Consensus 163 ~~~~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~ 239 (280)
T 1i9g_A 163 ADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVG 239 (280)
T ss_dssp GGCCCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCCCCCEEEET
T ss_pred HhcCCCC---CceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEEEeeeEeEecc
Confidence 8655554 7899999999999999999999999999999999999999999999987 6999999999999999987
Q ss_pred eeccCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 248 WRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
.+ .+|.+.|.+|+|||+++||..
T Consensus 240 ~~---------------------------------------~~p~~~~~~~~~~lv~~rk~~ 262 (280)
T 1i9g_A 240 LA---------------------------------------VRPQHSMRGHTAFLVATRRLA 262 (280)
T ss_dssp TE---------------------------------------EEECSCCCCCSCEEEEEEBCC
T ss_pred ce---------------------------------------eCCCCcccCccEEEEEEEecC
Confidence 65 699999999999999999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=283.37 Aligned_cols=256 Identities=30% Similarity=0.491 Sum_probs=235.9
Q ss_pred ccCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCce
Q 021550 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQ 90 (311)
Q Consensus 11 ~~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 90 (311)
++.+.|++||+|+|...+++++.+.++.|..+++++|.+++++++|+.+|..+....+..+++.+|+.+.+...+.+..+
T Consensus 15 ~~~~~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 94 (277)
T 1o54_A 15 KVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQ 94 (277)
T ss_dssp CGGGCCCTTCEEEEEETTSCEEEEECCTTCEEEETTEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CC
T ss_pred cccCCCCCCCEEEEEECCCcEEEEEEcCCCEEecCCceEEHHHhcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccccCC
Confidence 45678999999999999999999999999999999999999999999999999988888889999999999888888889
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+++.+++.++..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...++.+++++..+|+.
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 174 (277)
T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 174 (277)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 99999999999999999999999999999999999999977789999999999999999999998887556999999997
Q ss_pred CCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeee
Q 021550 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~ 249 (311)
+. ++. +.||+|++++++++.++..+.+.|+|||.++++.++.++..++.+.+++ +|..++.++.+.+.|++.+.+
T Consensus 175 ~~-~~~---~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 250 (277)
T 1o54_A 175 EG-FDE---KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVPER 250 (277)
T ss_dssp GC-CSC---CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCCEECCTTS
T ss_pred Hc-ccC---CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEeeeeeEeccce
Confidence 43 554 6899999999999999999999999999999999999999999999988 799999999999999998765
Q ss_pred ccCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 250 ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
+||...|.+|||||++|||..
T Consensus 251 ---------------------------------------~rp~~~~~~~~~~li~ark~~ 271 (277)
T 1o54_A 251 ---------------------------------------LRPVDRMVAHTAYMIFATKVC 271 (277)
T ss_dssp ---------------------------------------CEECSCCCCCSCEEEEEEECS
T ss_pred ---------------------------------------eCCCccccCCCeEEEEEEecC
Confidence 699999999999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=282.78 Aligned_cols=296 Identities=22% Similarity=0.311 Sum_probs=216.0
Q ss_pred ccCCCCCCCCEEEEEEcCCc---EEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcC
Q 021550 11 SFTRCIKEGDLVIVYERHDC---MKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSH 87 (311)
Q Consensus 11 ~~~~~i~~GD~V~l~~~~~~---~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~ 87 (311)
.++++|++||+|++..++++ ++.+.+++|.+++|++|.+.+++++|+.+|..+....|..++...|+++.+...+++
T Consensus 5 ~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~ 84 (336)
T 2b25_A 5 SRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKR 84 (336)
T ss_dssp ---CCCCTTCEEEEEC----CCCEEEEECCSSCBCC-----CBHHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCC
T ss_pred ccCCCCCCCCEEEEEeCCCCccceeeEEecCCCEEEcccCcEeHHHHcCCCCCceEEeCCCcEEEecCCCHHHHhhhhcC
Confidence 45678999999999987774 678899999999999999999999999999999888888888889999999888999
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC----------
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---------- 157 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---------- 157 (311)
+.++.+|.+...++..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...+
T Consensus 85 ~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~ 164 (336)
T 2b25_A 85 GTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE 164 (336)
T ss_dssp SSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred CCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999988777999999999999999999988643
Q ss_pred CCCcEEEEEecCCCC--CCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh---cCce
Q 021550 158 VSSFVTVGVRDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL---NFTD 232 (311)
Q Consensus 158 ~~~~v~~~~~D~~~~--~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~f~~ 232 (311)
...++++..+|+.+. .+++ +.||+|+++.+.++.++..+.+.|+|||.++++.++.+++.++.+.+++ .|..
T Consensus 165 ~~~~v~~~~~d~~~~~~~~~~---~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (336)
T 2b25_A 165 WPDNVDFIHKDISGATEDIKS---LTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 241 (336)
T ss_dssp CCCCEEEEESCTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred cCCceEEEECChHHcccccCC---CCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCccc
Confidence 224599999999753 2343 6799999999999999999999999999999999999999999998875 3667
Q ss_pred eeEEEeeceeeEEeeeeccCCC-----CCCCCCCCccccccccccccC---------CCCCCCCCCcceeecCCCCcccc
Q 021550 233 IRTFEILLRTYEIRQWRADCGQ-----GTGGGSAGSIRHKRKQHLIEG---------SGEKENPNNSTVMARPNGEARGH 298 (311)
Q Consensus 233 ~~~~e~~~r~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~h 298 (311)
....+...+.|.+...+-.... ...+-++......+.....+. +.......+..+.+||..+|.+|
T Consensus 242 ~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~ 321 (336)
T 2b25_A 242 EKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGH 321 (336)
T ss_dssp EEEECCCCCCEEECC------------------------------------------------------CEEECSSCCCC
T ss_pred ceEEEecccceEEEeecccccchhhhhcccccccccccccccccccchhhhhccccccccccccccCcccCCCCCccccC
Confidence 7778888899998633210000 000000000000000000000 01111223556789999999999
Q ss_pred ceeeEeEEeec
Q 021550 299 TGYLTFARLKC 309 (311)
Q Consensus 299 tgyl~~a~~~~ 309 (311)
||||+++||..
T Consensus 322 tgfl~~~r~~~ 332 (336)
T 2b25_A 322 TAFLVKLRKVK 332 (336)
T ss_dssp CCEEEEEEEC-
T ss_pred ceEEEEEEccc
Confidence 99999999964
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=256.40 Aligned_cols=244 Identities=28% Similarity=0.399 Sum_probs=219.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHh-hhhcCCceee
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWT-LVLSHRTQIL 92 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~ 92 (311)
++|++||+|++.... +.+++.+.||.|.+|+.|.+.+++++|+.+|..+ ..+++.+|+...+. ..+.+..+++
T Consensus 2 ~~~~~Gd~V~~~~~~-~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~G~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~ 75 (248)
T 2yvl_A 2 NSFKEGEYVLIRFGE-KKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKI-----NGFEVYRPTLEEIILLGFERKTQII 75 (248)
T ss_dssp CCCCTTCEEEEEETT-EEEEEECCTTCEEEETTEEEEGGGTTTCCTTEEE-----TTEEEECCCHHHHHHHTSCCSSCCC
T ss_pred CcCCCCCEEEEEeCC-eEEEEEEcCCCEEecCCceEEHHHhcCCCCCCEE-----EEEEEeCCCHHHHHHhcCcCCCCcc
Confidence 369999999999987 8899999999999999999999999999999866 45677888887776 5666778889
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+|.++..++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++++++.|++++...++..++++..+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 151 (248)
T 2yvl_A 76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD- 151 (248)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT-
T ss_pred cchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh-
Confidence 9999999999999999999999999999999999988 589999999999999999999888885569999999974
Q ss_pred CC-CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEeeeecc
Q 021550 173 GF-PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRAD 251 (311)
Q Consensus 173 ~~-~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~~~~~~ 251 (311)
.+ +. +.||+|++++++++.+++.+.+.|+|||.++++.++.++..++.+.+++.|.+++.++.+.+.|++.+.+
T Consensus 152 ~~~~~---~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~-- 226 (248)
T 2yvl_A 152 AEVPE---GIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVVEILHRHYKTISER-- 226 (248)
T ss_dssp SCCCT---TCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTTEEEEEEEEEEEEEECCCGGG--
T ss_pred cccCC---CcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCcceEEEeeeeEeecccCc--
Confidence 33 44 6899999999999999999999999999999999999999998888877799999999999999998765
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 252 CGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
+||...|.+|++||+++||..
T Consensus 227 -------------------------------------~~~~~~~~~~~~~l~~~rk~~ 247 (248)
T 2yvl_A 227 -------------------------------------FRPEDQMVAHTAYLVFGRKLK 247 (248)
T ss_dssp -------------------------------------CCBCSEEECCSCEEEEEEECC
T ss_pred -------------------------------------cCCCccCCCccEEEEEEEecc
Confidence 599999999999999999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=224.53 Aligned_cols=249 Identities=22% Similarity=0.330 Sum_probs=192.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeee
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY 93 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 93 (311)
..++....|++...+...+. ..+. +..++..+.+.+++++|+++|..+. ..+..++...|....+...+.+..+.++
T Consensus 19 ~~~~~~~~~i~~~~~~~~~~-~~r~-~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (275)
T 1yb2_A 19 SHMKRSSPVILVSEDEYGKF-DEST-NSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDFSPMYFGRVIRRNTQIIS 95 (275)
T ss_dssp -------CCEEECSSCCEEE-ETTT-TEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECCCGGGHHHHC--------
T ss_pred hccccCceEEEEecCCCCce-eccc-cceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCCCHHHHHhhccccccccC
Confidence 34667777888765544332 3333 3467778888999999999999887 6666778889998888888888888899
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~ 172 (311)
+.+...++..+++.++.+|||+|||+|.++..+++.+.+..+|+++|+++.+++.|++++... +..+ +++..+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~-v~~~~~d~~~- 173 (275)
T 1yb2_A 96 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIAD- 173 (275)
T ss_dssp ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTT-
T ss_pred hhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECchhc-
Confidence 999888999999999999999999999999999998767789999999999999999999887 7554 9999999974
Q ss_pred CCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeecc
Q 021550 173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRAD 251 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~~ 251 (311)
.+++ +.||+|++++++++.+++.+.+.|+|||.+++..+..++..++.+.+.+ +|..++.++.+.+.|++....
T Consensus 174 ~~~~---~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~-- 248 (275)
T 1yb2_A 174 FISD---QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGA-- 248 (275)
T ss_dssp CCCS---CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTC--
T ss_pred cCcC---CCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEEecceeEecCCc--
Confidence 5555 6899999999999999999999999999999999999888888888887 799999999999999987654
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 252 CGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
.||...|.+|++||++|||..
T Consensus 249 -------------------------------------~rp~~~~~~~~~~li~ark~~ 269 (275)
T 1yb2_A 249 -------------------------------------TRPASDDLTHTAFITFAIKKS 269 (275)
T ss_dssp -------------------------------------CCCGGGGSCEEEEEEEEEECC
T ss_pred -------------------------------------cccccccCCCcEEEEEEEehh
Confidence 599999999999999999974
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=138.28 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=119.1
Q ss_pred ecccH-HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 93 YIADI-SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 93 ~~~~~-~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
.+..+ ..++..+.+.++.+|||+|||+|.++..+++. ++..+|+++|+++++++.|++++...++.+ +++..+|+.+
T Consensus 24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~ 101 (204)
T 3e05_A 24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAPE 101 (204)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTCTT-EEEEECCTTT
T ss_pred ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeCChhh
Confidence 34444 56788899999999999999999999999988 467999999999999999999999888854 9999999864
Q ss_pred CCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeece
Q 021550 172 QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLR 241 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r 241 (311)
.++.. +.||+|+++.+ ....+++++.+.|+|||.+++..+..+....+.+.+++ +| +++..+....
T Consensus 102 -~~~~~--~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~ 170 (204)
T 3e05_A 102 -GLDDL--PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVEVACVNVA 170 (204)
T ss_dssp -TCTTS--CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEEEEEEEEE
T ss_pred -hhhcC--CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-ceeEEEEEee
Confidence 23321 57999998754 56789999999999999999998988889999999988 78 6666555433
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=143.28 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=118.4
Q ss_pred CCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHH---HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcE
Q 021550 59 FGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVI---MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135 (311)
Q Consensus 59 ~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~ 135 (311)
||+......+..++.+.|.-. +.++.++ ..++++||++|||+|||+|.++.++++.+++.++
T Consensus 40 yge~~~~~~~~e~r~w~p~rs---------------klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~ 104 (233)
T 4df3_A 40 YGERIFRYNGEEYREWNAYRS---------------KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGR 104 (233)
T ss_dssp SSCCEEEETTEEEEECCTTTC---------------HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCE
T ss_pred cCceEEEcCCceeeeECCCch---------------HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCce
Confidence 566655555556665555432 2233333 3467999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChh---hHHHHHHhcccCCcEEEEe
Q 021550 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 136 v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~---~~l~~~~~~LkpgG~lv~~ 212 (311)
|+++|+++++++.+++++... .| +..+.+|...........+.+|+||++.+.++ .++.++.+.|||||.+++.
T Consensus 105 V~avD~s~~~~~~l~~~a~~~--~n-i~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 105 IYGVEFAPRVMRDLLTVVRDR--RN-IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EEEEECCHHHHHHHHHHSTTC--TT-EEEEESCTTCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHhhHhh--cC-eeEEEEeccCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence 999999999999999886543 34 88888888652111111268999999887665 5789999999999999874
Q ss_pred ---------cCCHHHHHHHHHHHhh-cCceeeEEE
Q 021550 213 ---------SPCIEQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 213 ---------~~~~~~~~~~~~~l~~-~f~~~~~~e 237 (311)
.+....+.+..+.|++ +|..++..+
T Consensus 182 ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~ 216 (233)
T 4df3_A 182 IKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH 216 (233)
T ss_dssp EECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 2334556667777776 787665443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=134.04 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=110.2
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.....++..+.+.++.+|||+|||+|.++..+++. ..+|+++|+++++++.|++++...++.+++++..+|+.+ .+
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~~ 117 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA-AL 117 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG-GG
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh-hc
Confidence 33445788889999999999999999999999987 589999999999999999999999988559999999974 22
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
+.. ..||+|+++......+++.+.+.|+|||++++.....+...++.+.+++ ++
T Consensus 118 ~~~--~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 118 ADL--PLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGG 172 (204)
T ss_dssp TTS--CCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred ccC--CCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCC
Confidence 221 5799999876533338999999999999999999999999999999988 54
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=141.47 Aligned_cols=147 Identities=19% Similarity=0.098 Sum_probs=119.5
Q ss_pred hcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 85 LSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
..+..+..++..+..++..+.+.++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++...++.+++++
T Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~ 90 (256)
T 1nkv_A 13 EHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHF 90 (256)
T ss_dssp SCSSSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CccccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence 3445566778888889999999999999999999999999999986 46999999999999999999998888767999
Q ss_pred EEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH------H---------------H
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI------E---------------Q 218 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~------~---------------~ 218 (311)
..+|+.+..+ + ++||+|++ +.+++..++.++.++|+|||.+++..+.. . .
T Consensus 91 ~~~d~~~~~~-~---~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (256)
T 1nkv_A 91 IHNDAAGYVA-N---EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT 166 (256)
T ss_dssp EESCCTTCCC-S---SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred EECChHhCCc-C---CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence 9999986444 3 78999986 45677889999999999999999864321 1 1
Q ss_pred HHHHHHHHhh-cCceeeEEE
Q 021550 219 VQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 219 ~~~~~~~l~~-~f~~~~~~e 237 (311)
..++.+.+.+ +|..++...
T Consensus 167 ~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 167 LPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp HHHHHHHHHTTTBCCCEEEE
T ss_pred HHHHHHHHHHCCCeeEEEEe
Confidence 2456667766 788776544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-16 Score=126.88 Aligned_cols=143 Identities=12% Similarity=0.139 Sum_probs=116.1
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+.....++..+.+.++.+|||+|||+|.++..+++ +..+++++|+++.+++.|++++...++.+ +++..+|+.+ .
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~ 95 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAED-V 95 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCS-EEEEESCHHH-H
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEECCccc-c
Confidence 33344577788888999999999999999999887 46899999999999999999999888755 9999999874 5
Q ss_pred CCCcCCCCccEEEecCC-ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 174 FPDEFSGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
++. +.||+|+++.+ ....++..+.+. |||.+++..+..+...++.+.+++.-..++..+.....+...
T Consensus 96 ~~~---~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 164 (183)
T 2yxd_A 96 LDK---LEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVNVFISYAKKI 164 (183)
T ss_dssp GGG---CCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred ccC---CCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEEeeeehhhcc
Confidence 554 68999998765 556778888887 999999999999999999999988324566666555555444
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=131.13 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=121.7
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
...+++.....++..+...++ +|||+|||+|.++..+++. +..+++++|+++.+++.|++++...++.+++++..+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d 101 (219)
T 3dlc_A 25 FAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101 (219)
T ss_dssp TTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECB
T ss_pred hccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcC
Confidence 334456666677888887777 9999999999999999998 5689999999999999999999998887679999999
Q ss_pred CCCCCCCCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH---------------------------
Q 021550 169 IQGQGFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI--------------------------- 216 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------------------------- 216 (311)
+....++. ++||+|++. .+++..++.++.+.|+|||.+++..+..
T Consensus 102 ~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (219)
T 3dlc_A 102 VHNIPIED---NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNI 178 (219)
T ss_dssp TTBCSSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred HHHCCCCc---ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhcc
Confidence 98766665 789999864 4677889999999999999999853221
Q ss_pred --HHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 217 --EQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 217 --~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
....++.+.+++ +|..++........|-+.
T Consensus 179 ~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 179 SQENVERFQNVLDEIGISSYEIILGDEGFWIII 211 (219)
T ss_dssp SHHHHHHHHHHHHHHTCSSEEEEEETTEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEecCCceEEEE
Confidence 122555566666 799888877766666555
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-16 Score=130.92 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=104.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~~~~~D~ 184 (311)
.++.+|||+|||+|.++..+++.. |..+++++|+++.+++.|++++...++.+ +.++.+|+.... ++. +.||+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~---~~~D~ 114 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFED---GEIDR 114 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCT---TCCSE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCC---CCCCE
Confidence 467899999999999999999985 67899999999999999999999888855 999999997522 444 68999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceee
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
|+++.+++| .++..+.++|+|||.+++.+........+.+.+.+ +|....
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence 999988764 68999999999999999988777777777777776 675443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-16 Score=130.45 Aligned_cols=148 Identities=23% Similarity=0.248 Sum_probs=120.8
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++...++.+ +++..+|+....++.
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECBTTBCSSCS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEecccccCCCCC
Confidence 3457788889999999999999999999999997677899999999999999999998888775 999999998766665
Q ss_pred cCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH------------HHHHHHHHHHhh-cCceeeEEEe
Q 021550 177 EFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI------------EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~------------~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
++||+|++ +.+++..++.++.++|+|||.+++..... -...++...+++ +|..++..+.
T Consensus 105 ---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 181 (219)
T 3dh0_A 105 ---NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV 181 (219)
T ss_dssp ---SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ---CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee
Confidence 78999986 45577889999999999999999864221 124566677776 8988887776
Q ss_pred eceeeEEeee
Q 021550 239 LLRTYEIRQW 248 (311)
Q Consensus 239 ~~r~~~v~~~ 248 (311)
....|-+...
T Consensus 182 ~~~~~~~~~~ 191 (219)
T 3dh0_A 182 GKYCFGVYAM 191 (219)
T ss_dssp TTTEEEEEEE
T ss_pred CCceEEEEEE
Confidence 6666665543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=126.45 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=117.4
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.....++..+.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+...++.+..+|+.. .+
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~ 95 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL 95 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc
Confidence 334457778889999999999999999999998873 89999999999999999999988885559999999864 33
Q ss_pred CCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEE
Q 021550 175 PDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
+.. +.||+|+++.+ ....++..+.+.|+|||.+++..+......++.+.+++ +| .++..+.....+..
T Consensus 96 ~~~--~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~ 166 (192)
T 1l3i_A 96 CKI--PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-DVNITELNIARGRA 166 (192)
T ss_dssp TTS--CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred ccC--CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-ceEEEEEEcccCeE
Confidence 321 47999998754 45678999999999999999988888888888888888 68 67766665544443
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=125.05 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=114.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFP 175 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~ 175 (311)
...++..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...++.+ ++++..+|+.. .++
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~ 116 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccc
Confidence 345778888889999999999999999998887 5799999999999999999998888764 59999999874 444
Q ss_pred CcCCCCccEEEecCCCh------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeece
Q 021550 176 DEFSGLADSIFLDLPQP------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLR 241 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r 241 (311)
. +.||+|+++.+-. ..+++.+.+.|+|||.+++..+......++.+.+++.|..++.+.....
T Consensus 117 ~---~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 185 (194)
T 1dus_A 117 D---RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGG 185 (194)
T ss_dssp T---SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEETT
T ss_pred c---CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCCc
Confidence 4 6899999987632 3688999999999999999988887777788888776766666554433
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=129.14 Aligned_cols=122 Identities=15% Similarity=0.244 Sum_probs=102.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~~~~~D~ 184 (311)
.++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|++++...++.+ +.++.+|+.... ++. +.||.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~---~~~d~ 111 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP---GEVKR 111 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT---TSCCE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCc---CCcCE
Confidence 467899999999999999999985 67899999999999999999999888866 999999987522 444 68999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~ 233 (311)
|+++.++|| .++..+.++|+|||.|++.+........+.+.+.+ +|...
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 998877653 57999999999999999888887777777777776 56543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=132.51 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=111.0
Q ss_pred cccHHHHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 94 IADISFVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 94 ~~~~~~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+.....++..+. +.++.+|||+|||+|.++..+++. +.++|+++|+++.+++.|++++...++.+++++..+|+.+.
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 108 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL 108 (267)
T ss_dssp HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence 333444666665 788999999999999999999987 56799999999999999999999999887899999999865
Q ss_pred CCCCcCCCCccEEEecC----CChhhHHHHHHhcccCCcEEEEecCCH--------------------HHHHHHHHHHhh
Q 021550 173 GFPDEFSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSPCI--------------------EQVQRSCESLRL 228 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~----~~~~~~l~~~~~~LkpgG~lv~~~~~~--------------------~~~~~~~~~l~~ 228 (311)
+++. ++||+|++.. .++..++.++.++|+|||.+++..+.. .....+.+.+.+
T Consensus 109 ~~~~---~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (267)
T 3kkz_A 109 PFRN---EELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHK 185 (267)
T ss_dssp CCCT---TCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHH
T ss_pred CCCC---CCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5555 7899998632 267789999999999999999864320 123455566666
Q ss_pred -cCceeeEEEee
Q 021550 229 -NFTDIRTFEIL 239 (311)
Q Consensus 229 -~f~~~~~~e~~ 239 (311)
+|..++....-
T Consensus 186 aGf~~v~~~~~~ 197 (267)
T 3kkz_A 186 AGYLPVATFILP 197 (267)
T ss_dssp TTEEEEEEEECC
T ss_pred CCCEEEEEEECC
Confidence 78877665543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=141.10 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=106.9
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-----C-C-CCcEEEEEecCCCC------
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----G-V-SSFVTVGVRDIQGQ------ 172 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g-~-~~~v~~~~~D~~~~------ 172 (311)
+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++... | . ..++++..+|+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 568899999999999999999999877789999999999999999988654 3 2 13599999999864
Q ss_pred CCCCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH----------------------HHHHHHHHH
Q 021550 173 GFPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI----------------------EQVQRSCES 225 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------------~~~~~~~~~ 225 (311)
++++ ++||+|+++ .+++..++.++.++|+|||.|++..+.. -...++.+.
T Consensus 161 ~~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 161 GVPD---SSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCC---CCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 5665 789999864 4678889999999999999998853221 112566677
Q ss_pred Hhh-cCceeeEEEeeceeeEEe
Q 021550 226 LRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 226 l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
+++ +|..++..+. +.|.+.
T Consensus 238 l~~aGF~~v~~~~~--~~~~~~ 257 (383)
T 4fsd_A 238 VAEAGFRDVRLVSV--GPVDVS 257 (383)
T ss_dssp HHHTTCCCEEEEEE--EEECCC
T ss_pred HHHCCCceEEEEec--cccccC
Confidence 776 7988876653 344444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=126.33 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=101.6
Q ss_pred HhcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~ 179 (311)
....+.++.+|||+||| +|.++..+++.. ..+|+++|+++.+++.|++++...+. ++++..+|+.. ..+++
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~--- 121 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVE--- 121 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCC---
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhccc---
Confidence 34456789999999999 999999999985 58999999999999999999999887 49999999743 34444
Q ss_pred CCccEEEecCCC------------------------hhhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhh-cC
Q 021550 180 GLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~d~~~------------------------~~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~-~f 230 (311)
+.||+|++++|- ...++..+.++|+|||.++++.+.. ....++.+.+.+ +|
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~ 198 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY 198 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC
Confidence 789999998763 2568999999999999999877654 667788888877 56
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=130.86 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=113.0
Q ss_pred cccHHHHHHhc-CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 94 IADISFVIMYL-ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 94 ~~~~~~i~~~~-~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+.....++..+ .+.++.+|||+|||+|.++..+++.. .++|+++|+++.+++.|++++...++.+++++..+|+...
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC--CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 33444455555 57888999999999999999999985 2599999999999999999999999888899999999766
Q ss_pred CCCCcCCCCccEEEec----CCChhhHHHHHHhcccCCcEEEEecCC--------------------HHHHHHHHHHHhh
Q 021550 173 GFPDEFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILCSFSPC--------------------IEQVQRSCESLRL 228 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d----~~~~~~~l~~~~~~LkpgG~lv~~~~~--------------------~~~~~~~~~~l~~ 228 (311)
+++. ++||+|++. ..++..++.++.++|+|||.+++..++ .....++.+.+++
T Consensus 109 ~~~~---~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (257)
T 3f4k_A 109 PFQN---EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMER 185 (257)
T ss_dssp SSCT---TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHH
T ss_pred CCCC---CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 6665 789999853 236778999999999999999986532 1123455666666
Q ss_pred -cCceeeEEEeeceee
Q 021550 229 -NFTDIRTFEILLRTY 243 (311)
Q Consensus 229 -~f~~~~~~e~~~r~~ 243 (311)
+|..++....-...|
T Consensus 186 aGf~~v~~~~~~~~~w 201 (257)
T 3f4k_A 186 AGYTPTAHFILPENCW 201 (257)
T ss_dssp TTEEEEEEEECCGGGT
T ss_pred CCCeEEEEEECChhhH
Confidence 788777655544444
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=130.91 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=100.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~~~~~~~~D~ 184 (311)
++.+|||+|||+|.++..+++.. |...|+++|+++.+++.|++++...++.+ +.++.+|+... .+++ ++||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~---~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPD---NSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCT---TCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCC---CChhe
Confidence 67899999999999999999884 67899999999999999999999888877 99999998741 1455 78999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+++.|+|| .++..+.++|+|||.+++.+........+.+.+..
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 999876664 38999999999999999988888877888887766
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=121.11 Aligned_cols=128 Identities=22% Similarity=0.205 Sum_probs=105.7
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...++..++ +..+|+.. .++.
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~~~ 90 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AFDD 90 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GGGG
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hhhc
Confidence 3457788888999999999999999999999885 5789999999999999999999998887558 88888753 3332
Q ss_pred cCCCCccEEEecCCCh-hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 177 EFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
. .+.||+|+++.... ..+++.+.+.|+|||.+++.....+........++.
T Consensus 91 ~-~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 142 (178)
T 3hm2_A 91 V-PDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQ 142 (178)
T ss_dssp C-CSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHH
T ss_pred c-CCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHH
Confidence 1 15799999865433 468999999999999999988888888888888877
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=130.56 Aligned_cols=139 Identities=19% Similarity=0.222 Sum_probs=110.2
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh---cCCCCcEEEEEecCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGVSSFVTVGVRDIQG 171 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~g~~~~v~~~~~D~~~ 171 (311)
.|.-++..++...++.+|||+|||+|.+++.++++. +..+|+++|+++.+++.|++++.. +++.++++++.+|+.+
T Consensus 23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~ 101 (260)
T 2ozv_A 23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL 101 (260)
T ss_dssp CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence 344446677788889999999999999999999985 568999999999999999999988 7887779999999975
Q ss_pred C-------CCCCcCCCCccEEEecCCC-----------------------hhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 172 Q-------GFPDEFSGLADSIFLDLPQ-----------------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 172 ~-------~~~~~~~~~~D~V~~d~~~-----------------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
. .++. ++||+|++++|- ...++..+.++|+|||.+++..+.. +..+
T Consensus 102 ~~~~~~~~~~~~---~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~ 177 (260)
T 2ozv_A 102 RAKARVEAGLPD---EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-SVAE 177 (260)
T ss_dssp CHHHHHHTTCCT---TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-GHHH
T ss_pred HhhhhhhhccCC---CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-HHHH
Confidence 3 1334 789999998663 2356888999999999999876654 5677
Q ss_pred HHHHHhhcCceeeEEEe
Q 021550 222 SCESLRLNFTDIRTFEI 238 (311)
Q Consensus 222 ~~~~l~~~f~~~~~~e~ 238 (311)
+.+.+++.|...+....
T Consensus 178 ~~~~l~~~~~~~~i~~v 194 (260)
T 2ozv_A 178 IIAACGSRFGGLEITLI 194 (260)
T ss_dssp HHHHHTTTEEEEEEEEE
T ss_pred HHHHHHhcCCceEEEEE
Confidence 77777665554444443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=128.84 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=96.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
...++..++..+.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+..+ +.+..+|+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~l 97 (260)
T 1vl5_A 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQM 97 (260)
T ss_dssp -CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CC
T ss_pred CHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHhC
Confidence 34556678888888899999999999999999998873 599999999999999999998888765 99999999876
Q ss_pred CCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 173 GFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++++ ++||+|++ +.+++..++.++.++|+|||.+++.
T Consensus 98 ~~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 98 PFTD---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CSCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCC---CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 6666 78999986 3567889999999999999999885
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=130.59 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=106.6
Q ss_pred HHHHHHhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--
Q 021550 97 ISFVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-- 173 (311)
Q Consensus 97 ~~~i~~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-- 173 (311)
..++..++.+. ++.+|||+|||+|.++..++++. ..+|+++|+++.+++.|++++..+++.+++++..+|+.+..
T Consensus 37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~ 114 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL 114 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence 33466777888 89999999999999999999873 34999999999999999999999998877999999997522
Q ss_pred CCCcCCCCccEEEecCCCh-------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 174 FPDEFSGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~-------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++. ++||+|++|+|-. ..++..+.++|+|||.+++..+. +...++...+++
T Consensus 115 ~~~---~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~ 190 (259)
T 3lpm_A 115 IPK---ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-ERLLDIIDIMRK 190 (259)
T ss_dssp SCT---TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-TTHHHHHHHHHH
T ss_pred hcc---CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-HHHHHHHHHHHH
Confidence 333 7899999987731 24789999999999999986653 456667777776
Q ss_pred -cCceeeE
Q 021550 229 -NFTDIRT 235 (311)
Q Consensus 229 -~f~~~~~ 235 (311)
+|...+.
T Consensus 191 ~~~~~~~~ 198 (259)
T 3lpm_A 191 YRLEPKRI 198 (259)
T ss_dssp TTEEEEEE
T ss_pred CCCceEEE
Confidence 5554443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=128.18 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHHHhc---CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 97 ISFVIMYL---ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 97 ~~~i~~~~---~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
.+.++..+ .++||.+|||+|||+|.++.++++.+++.++|+++|+++.+++.+.+..... .+ +.++.+|+....
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~n-v~~i~~Da~~~~ 138 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PN-IFPLLADARFPQ 138 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TT-EEEEECCTTCGG
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-eEEEEcccccch
Confidence 33455544 4899999999999999999999999988899999999999876554444332 34 999999987421
Q ss_pred CCCcCCCCccEEEecCCChhh--HH-HHHHhcccCCcEEEEec--CCH-------HHHHHHHHHHhh-cCceeeEE
Q 021550 174 FPDEFSGLADSIFLDLPQPWL--AI-PSAKKMLKQDGILCSFS--PCI-------EQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~--~l-~~~~~~LkpgG~lv~~~--~~~-------~~~~~~~~~l~~-~f~~~~~~ 236 (311)
......+.||+|++|.+.++. .+ ..+.++|||||+|++.. .+. +........|++ +|.-++..
T Consensus 139 ~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp GTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred hhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 111112689999999876543 34 45556999999998753 221 123445556655 56544433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=132.38 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
++||.+|||+|||+|.++..+++.+. ++.+|+++|+|+.|++.|++++...+...+++++++|+.+. +. +.||+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~--~~---~~~d~ 142 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--AI---ENASM 142 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC--CC---CSEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc--cc---ccccc
Confidence 68999999999999999999998864 45699999999999999999999888877799999999764 33 56999
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|++.. + +...+|+++.+.|+|||.|++.
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 98642 2 2236899999999999999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=125.58 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=93.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~ 178 (311)
.+....+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...++.+++++..+|+.... +..
T Consensus 14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-- 91 (197)
T 3eey_A 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYID-- 91 (197)
T ss_dssp HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCC--
T ss_pred HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhcc--
Confidence 34445678899999999999999999999987778999999999999999999999888666999999987532 333
Q ss_pred CCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|+++.+- .+.++.++.++|+|||.+++..
T Consensus 92 -~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 92 -CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp -SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 689999987642 2468999999999999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=129.27 Aligned_cols=118 Identities=14% Similarity=0.265 Sum_probs=96.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh------cCCCCcEEEEEecCCC-CC--CCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER------TGVSSFVTVGVRDIQG-QG--FPD 176 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~g~~~~v~~~~~D~~~-~~--~~~ 176 (311)
..++.+|||||||+|.++..+++.. |...|+|+|+++.+++.|++++.. .+..+ +.++.+|+.. .. ++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~~~~~~ 121 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLPNFFYK 121 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHHHHCCT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhhhhCCC
Confidence 4567799999999999999999875 678999999999999999988764 34555 9999999974 22 445
Q ss_pred cCCCCccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 177 EFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+.||.|+++.++|| .++..+.++|+|||.|++.+........+.+.+..
T Consensus 122 ---~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 122 ---GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE 183 (235)
T ss_dssp ---TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred ---cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 78999999888876 58999999999999999988888777777887766
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=129.75 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=97.1
Q ss_pred CCceeeecccHHHHH---HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcE
Q 021550 87 HRTQILYIADISFVI---MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFV 162 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~---~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v 162 (311)
....++.|.....+. ...+.+++.+|||+|||+|..+..+++.++++++|+++|+++++++.|++++...++. +++
T Consensus 32 ~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i 111 (221)
T 3dr5_A 32 FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV 111 (221)
T ss_dssp TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE
Confidence 344455555544333 3334444559999999999999999999866899999999999999999999999987 679
Q ss_pred EEEEecCCCC--CCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 163 TVGVRDIQGQ--GFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 163 ~~~~~D~~~~--~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+++.+|+.+. .++. ++||+||++.. ....+++.+.+.|+|||.+++-
T Consensus 112 ~~~~gda~~~l~~~~~---~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 112 RFLLSRPLDVMSRLAN---DSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EEECSCHHHHGGGSCT---TCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred EEEEcCHHHHHHHhcC---CCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 9999998641 2323 78999999865 3456899999999999999973
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-15 Score=125.97 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHH---HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcE
Q 021550 59 FGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135 (311)
Q Consensus 59 ~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~ 135 (311)
+|.......+..++...|.. ++....+ +..+.+.++.+|||+|||+|.++..+++.+++.++
T Consensus 36 ~g~~~~~~~~~~~~~~~p~~---------------~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~ 100 (227)
T 1g8a_A 36 YGERVIKWEGEEYRIWNPNR---------------SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGK 100 (227)
T ss_dssp TTCCEEEETTEEEEECCTTT---------------CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSE
T ss_pred cCceEEEecCeEEEEeCCCc---------------hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeE
Confidence 66665555555555556654 2222334 33444788999999999999999999999876789
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhh--H-HHHHHhcccCCcEEEEe
Q 021550 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL--A-IPSAKKMLKQDGILCSF 212 (311)
Q Consensus 136 v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~--~-l~~~~~~LkpgG~lv~~ 212 (311)
|+++|+++.+++.+++++... .++++..+|+..........++||+|+++.+.++. . +.++.+.|+|||.+++.
T Consensus 101 v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 101 IFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999887654 34999999997521100011579999999876543 4 89999999999999875
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=130.90 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=96.3
Q ss_pred HHHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++..+. +.++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++...++.+++++..+|+...+++.
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34667777 8899999999999999999999986 47999999999999999999999998877999999998766665
Q ss_pred cCCCCccEEEec----CCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d----~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++. ..++..++.++.++|+|||.+++..
T Consensus 184 ---~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 184 ---GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ---TCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 789999852 1257789999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=129.68 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=97.1
Q ss_pred HHHHHhc----CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 98 SFVIMYL----ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 98 ~~i~~~~----~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
..++..+ .+.++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++...++.+++++..+|+...+
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 3466677 88899999999999999999999986 46999999999999999999988888777999999998766
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+++ ++||+|++ +.+++..++.++.++|+|||.+++..+
T Consensus 146 ~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 CED---NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCT---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC---CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 665 78999985 456778899999999999999988643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=129.37 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=89.7
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.++++.++++|||+|||+|.++..++.+. ++++|+++|+++++++.|+++++..++ +++++..+|+.+ ++. ++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l~d---~~ 188 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--IDG---LE 188 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--GGG---CC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--CCC---CC
Confidence 56789999999999999988775554443 468999999999999999999999898 569999999975 444 78
Q ss_pred ccEEEecC--CChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDL--PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~--~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||+|+++. ++...+++++.+.|||||+|++...
T Consensus 189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99999753 4667899999999999999998653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=122.33 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=107.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...+..+ +++..+|+.. +.. +.||+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~--~~~---~~fD~i 129 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLA--DVD---GKFDLI 129 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTT--TCC---SCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccc--cCC---CCceEE
Confidence 568899999999999999998875 46799999999999999999999988877 9999999874 333 789999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeee
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQW 248 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~ 248 (311)
+++.+.. ..+++++.+.|+|||.+++......+...+.+.+++ +|..++..+. ..|.....
T Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~--~~w~~~~~ 193 (205)
T 3grz_A 130 VANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA--GRWIGLAI 193 (205)
T ss_dssp EEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE--TTEEEEEE
T ss_pred EECCcHHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc--CCEEEEEE
Confidence 9887643 356888999999999999876666777888888877 7876664442 45555443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=128.13 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=98.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++|+..+++.+++++..+|+.+... . +.||+|
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~--~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~---~~fD~V 196 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-E---NIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-C---SCEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-c---CCccEE
Confidence 4678999999999999999999883 238999999999999999999999998779999999985333 3 789999
Q ss_pred EecCCCh-hhHHHHHHhcccCCcEEEEecCC------HHHHHHHHHHHhh-cCc
Q 021550 186 FLDLPQP-WLAIPSAKKMLKQDGILCSFSPC------IEQVQRSCESLRL-NFT 231 (311)
Q Consensus 186 ~~d~~~~-~~~l~~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~-~f~ 231 (311)
++++|.. ..++..+.+.|+|||.++++... .+....+.+.+.+ +|.
T Consensus 197 i~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 197 LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD 250 (278)
T ss_dssp EECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred EECCchhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence 9998744 47899999999999999986543 2445566666665 553
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=126.35 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=102.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|..++.++... +..+|+++|+++.+++.|++++...++.+ ++++++|+.+........++||+|
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEE
Confidence 3578899999999999999999885 67899999999999999999999999887 999999987533211112689999
Q ss_pred EecC-CChhhHHHHHHhcccCCcEEEEecC--CHHHHHHHHHHHhh-cCceeeEE
Q 021550 186 FLDL-PQPWLAIPSAKKMLKQDGILCSFSP--CIEQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 186 ~~d~-~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~-~f~~~~~~ 236 (311)
++.. .+...+++.+.++|+|||+++++.. ..+.+..+...+.. +|...+..
T Consensus 156 ~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 156 VARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp EEESSCCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred EECCcCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 9854 3445688999999999999988754 45666667777766 66555443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=126.33 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF 174 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~ 174 (311)
...+..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...++.+++++..+|+.+ ..+
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL 131 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence 333444446678899999999999999999998755799999999999999999999999988779999999864 112
Q ss_pred CCcCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. .+.||+|+++.+.. ..+++.+.++|+|||.|++...
T Consensus 132 ~~--~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 132 GE--CPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CS--CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CC--CCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 11 14899999887643 4689999999999999997544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=126.74 Aligned_cols=109 Identities=31% Similarity=0.435 Sum_probs=94.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.....+.++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|++++...+..+ +.+...|+....++.
T Consensus 29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~--- 103 (276)
T 3mgg_A 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFED--- 103 (276)
T ss_dssp HHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCSCT---
T ss_pred HhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCCCC---
Confidence 4445567889999999999999999999984 67899999999999999999999888876 999999998766665
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++ +.+++..++.++.++|+|||.+++..
T Consensus 104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 78999986 45678889999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=126.38 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=97.4
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++.+..+|+...++++
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 127 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED- 127 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT-
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC-
Confidence 357788888999999999999999999999885 58999999999999999999998888777999999998766665
Q ss_pred CCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++ +.+++..++.++.++|+|||.+++..
T Consensus 128 --~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 128 --ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp --TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 78999985 45677889999999999999998754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=125.35 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=98.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--------CCCCcEEEEEecCCC-CC--C
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVSSFVTVGVRDIQG-QG--F 174 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------g~~~~v~~~~~D~~~-~~--~ 174 (311)
+.++.+|||+|||+|.++..+++.. +...|+++|+++.+++.|++++... ++.+ +.++.+|+.+ .. +
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFF 124 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhc
Confidence 4577899999999999999999984 5679999999999999999998776 6665 9999999874 11 3
Q ss_pred CCcCCCCccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 175 PDEFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+. +.+|.|+++.|++| .++..+.++|+|||.|++.+........+.+.+..
T Consensus 125 ~~---~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 188 (246)
T 2vdv_E 125 EK---GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE 188 (246)
T ss_dssp CT---TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred cc---cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence 34 78999998888886 78999999999999999877776656666666655
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=127.52 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=98.4
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
..++.+.....+..++...++.+|||+|||+|..+..+++. .+.++|+++|+++.+++.|++++...++.++++++.+|
T Consensus 52 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (232)
T 3ntv_A 52 VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN 130 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 34455555566667777778899999999999999999985 35799999999999999999999999987679999999
Q ss_pred CCCCCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 169 IQGQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+ .++....++||+|+++.+ ....+++.+.+.|+|||.|++
T Consensus 131 ~~~-~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 131 ALE-QFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp GGG-CHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred HHH-HHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 974 222001278999998764 446789999999999999987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=126.62 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=94.4
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+++.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...++.+++++..+|+.+ + .
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-~- 135 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--F-D- 135 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--C-C-
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH--c-C-
Confidence 3477888899999999999999999999999873 79999999999999999999998988779999999975 3 3
Q ss_pred CCCCccEEEe-----cCCCh---------hhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFL-----DLPQP---------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~---------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++ ..++.++.++|+|||.+++...
T Consensus 136 --~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 136 --EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp --CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred --CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 78999986 34454 4789999999999999988543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-15 Score=123.29 Aligned_cols=117 Identities=25% Similarity=0.182 Sum_probs=97.1
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
+..+.....++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...++.+ +++..+|+.
T Consensus 60 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 135 (210)
T 3lbf_A 60 ISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGW 135 (210)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCcc
Confidence 345666677888999999999999999999999999988 5899999999999999999999888875 999999997
Q ss_pred CCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
....+. ++||+|+++...++ +.+.+.+.|+|||++++..+.
T Consensus 136 ~~~~~~---~~~D~i~~~~~~~~-~~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 136 QGWQAR---APFDAIIVTAAPPE-IPTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCGGG---CCEEEEEESSBCSS-CCTHHHHTEEEEEEEEEEECS
T ss_pred cCCccC---CCccEEEEccchhh-hhHHHHHhcccCcEEEEEEcC
Confidence 533333 78999998644322 335789999999999987765
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=128.64 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=101.8
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+.+.....+..++...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.++++++.+|+.+
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 34444445555666678899999999999999999998766789999999999999999999999988779999999753
Q ss_pred --CCCCC-cCCCCccEEEecCCChh-----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 172 --QGFPD-EFSGLADSIFLDLPQPW-----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 172 --~~~~~-~~~~~~D~V~~d~~~~~-----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
..+.. ...++||+||++..... .++..+ +.|+|||.|++-.........+.+.+++
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 185 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG 185 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence 11111 00157999999875322 345555 9999999999754444444566666665
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-15 Score=125.80 Aligned_cols=123 Identities=23% Similarity=0.210 Sum_probs=96.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
+.....+..++...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.++++++.+|+.+.
T Consensus 44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 123 (223)
T 3duw_A 44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123 (223)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3333344445566788999999999999999999987547899999999999999999999999887899999998631
Q ss_pred -CCCCcCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecCCH
Q 021550 173 -GFPDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
.+.....+.||+||++.+.. ..+++.+.+.|+|||.+++.....
T Consensus 124 ~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 124 QQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred HHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 11110014699999987643 568999999999999999864443
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=119.23 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
..+.++.+|||+|||+|.++..+++. .++|+++|+++.+++.|++++...++.+ +++...|.... .+.+ ++|
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~~~~~l~~~~~---~~f 90 (185)
T 3mti_A 18 EVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIEN-TELILDGHENLDHYVR---EPI 90 (185)
T ss_dssp TTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCC-EEEEESCGGGGGGTCC---SCE
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCcHHHHHhhcc---CCc
Confidence 35678999999999999999999987 5899999999999999999999888854 99998776531 1333 789
Q ss_pred cEEEecCC--------------ChhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLP--------------QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~--------------~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+|+++++ ....++.++.+.|+|||.+++...
T Consensus 91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99997732 123578999999999999987644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-14 Score=121.46 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=87.8
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC----CCCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG----QGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~----~~~~~ 176 (311)
+..+.+.++.+|||+|||+|.++..+++.++ .++|+++|+++.+++.|++++... .++.+..+|+.. ..+.
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~- 141 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV- 141 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-
Confidence 4455677899999999999999999999974 689999999999999999886544 349999999875 2222
Q ss_pred cCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|+.+.+.+ ..++.++.+.|+|||.+++.
T Consensus 142 ---~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 ---EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 5799999988877 67799999999999999884
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=129.58 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=94.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+++.++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++...++.+ +.+..+|+.......
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~-- 185 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN-- 185 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC--
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccccc--
Confidence 35677889999999999999999999999998667899999999999999999999999876 999999987532222
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++|+|+. ..++.++.++|+|||.+++.
T Consensus 186 -~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 186 -VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp -CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6799999987731 36789999999999999853
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=124.46 Aligned_cols=107 Identities=16% Similarity=0.049 Sum_probs=89.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++. ..++.+..+|+....++.
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~-- 106 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEP-- 106 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCT--
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCC--
Confidence 3566667778999999999999999999887 23499999999999999998754 334999999998766655
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++..+++++.++|+|||.+++..+
T Consensus 107 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 107 -DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 78999986 346788899999999999999998643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=124.56 Aligned_cols=111 Identities=22% Similarity=0.255 Sum_probs=96.1
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
....++..+++.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...++.+ +.+..+|+...+++
T Consensus 9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSC
T ss_pred CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccCCCC
Confidence 34457888999999999999999999999998873 599999999999999999998888775 99999999876666
Q ss_pred CcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEec
Q 021550 176 DEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 ~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+ ++||+|++. .+++..++.++.++|+|||.+++..
T Consensus 85 ~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 85 D---DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C---CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 5 789999863 4677889999999999999998853
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=124.08 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=99.9
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.++.+|||+|||+|.++..++... +..+|+++|+++.+++.|++++...++.+ ++++.+|+.+..+.....+.||+
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccE
Confidence 44578899999999999999999863 57899999999999999999999988876 99999998753332111168999
Q ss_pred EEec-CCChhhHHHHHHhcccCCcEEEEecC--CHHHHHHHHHHHhh-cCceee
Q 021550 185 IFLD-LPQPWLAIPSAKKMLKQDGILCSFSP--CIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 185 V~~d-~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~-~f~~~~ 234 (311)
|++. ..+...+++.+.++|+|||.++++.. ..+....+.+.++. +|...+
T Consensus 145 V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 145 VTARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp EEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEeccCCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeE
Confidence 9975 45667789999999999999988743 23455566666666 565444
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=130.07 Aligned_cols=128 Identities=24% Similarity=0.273 Sum_probs=106.6
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
..+.+..++.++.+++..++.+|||+|||+|.++..++...++..+++++|+++.+++.|++|+...++. ++++.++|+
T Consensus 185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~ 263 (354)
T 3tma_A 185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADA 263 (354)
T ss_dssp CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCG
T ss_pred CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCCh
Confidence 3345555666888889999999999999999999999998656789999999999999999999999988 599999999
Q ss_pred CCCCCCCcCCCCccEEEecCCCh-------------hhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~-------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
.+...+. ..||+|++|+|-. ..+++.+.+.|+|||.++++++..+.+..
T Consensus 264 ~~~~~~~---~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~ 325 (354)
T 3tma_A 264 RHLPRFF---PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKR 325 (354)
T ss_dssp GGGGGTC---CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHH
T ss_pred hhCcccc---CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence 8644444 5689999998731 35788899999999999999887654433
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=123.69 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=100.0
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
...+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++|+..+++.+ +.+..+|+.+. +. .+.|
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~--~~--~~~~ 187 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV--EL--KDVA 187 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC--CC--TTCE
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc--Cc--cCCc
Confidence 3457789999999999999999999985 36799999999999999999999999876 88999999854 22 2689
Q ss_pred cEEEecCC-ChhhHHHHHHhcccCCcEEEEecCCH-----HHHHHHHHHHhh
Q 021550 183 DSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCI-----EQVQRSCESLRL 228 (311)
Q Consensus 183 D~V~~d~~-~~~~~l~~~~~~LkpgG~lv~~~~~~-----~~~~~~~~~l~~ 228 (311)
|+|++++| ....++..+.+.|+|||.+++.+... +...+..+.+.+
T Consensus 188 D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~ 239 (272)
T 3a27_A 188 DRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAE 239 (272)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred eEEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHH
Confidence 99999988 56778999999999999998765543 455666666665
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=127.65 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=93.4
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF---- 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~---- 174 (311)
.+...+++.+|.+|||+|||+|..+.++++.+.+.++|+++|+++.+++.+++++...++.+ +++..+|+.....
T Consensus 74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDYLLK 152 (274)
T ss_dssp HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHH
T ss_pred HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc-EEEEeCChHhcchhhhh
Confidence 45677889999999999999999999999987555899999999999999999999998875 9999999874221
Q ss_pred CCcCCCCccEEEecCCCh-----------------------hhHHHHHHhcccCCcEEEEe
Q 021550 175 PDEFSGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~-----------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
.. +.||+|++|+|.. ..++..+.+.|+|||.+++.
T Consensus 153 ~~---~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 153 NE---IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp TT---CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc---ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 12 6799999987642 46789999999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-15 Score=124.78 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH----HHhcCCCCcEEEEEecCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED----FERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~----~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
.+..+.+.++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.+.++ ....+..+ +.+..+|+...+++
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-EEEEECCSTTCCSC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-eEEEecchhhCCCC
Confidence 4555667889999999999999999999984 679999999999988864333 33345554 99999999875555
Q ss_pred CcCCCCccEEEecC----------CChhhHHHHHHhcccCCcEEEEe
Q 021550 176 DEFSGLADSIFLDL----------PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 176 ~~~~~~~D~V~~d~----------~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. +. |.|++.. +++..++.++.++|||||.+++.
T Consensus 97 ~---~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 97 S---GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp C---CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred C---CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4 44 6665433 45578899999999999999873
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=120.81 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=107.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.+|||+|||+|.+++.+++. ++..+|+++|+++.+++.|++|+..+++.+++++..+|.. ..++.. ..||+|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l-~~l~~~--~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL-AAFEET--DQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG-GGCCGG--GCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh-hhcccC--cCCCEE
Confidence 467889999999999999999986 4678999999999999999999999999888999999997 345541 269988
Q ss_pred Ee-cCCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee--eEEEeeceeeEEeee
Q 021550 186 FL-DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI--RTFEILLRTYEIRQW 248 (311)
Q Consensus 186 ~~-d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~--~~~e~~~r~~~v~~~ 248 (311)
++ .+.. -..++..+...|+++|++++ +|. .....+.++|.+ +|.-. ..++.-.+-|.+...
T Consensus 89 viaG~Gg~~i~~Il~~~~~~L~~~~~lVl-q~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~ 155 (225)
T 3kr9_A 89 TIAGMGGRLIARILEEGLGKLANVERLIL-QPN-NREDDLRIWLQDHGFQIVAESILEEAGKFYEILVV 155 (225)
T ss_dssp EEEEECHHHHHHHHHHTGGGCTTCCEEEE-EES-SCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred EEcCCChHHHHHHHHHHHHHhCCCCEEEE-ECC-CCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 75 3332 25688899999999999886 554 467788888887 66443 334555566777654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=125.79 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=94.1
Q ss_pred HHHHHHh-cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 97 ISFVIMY-LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 97 ~~~i~~~-~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
...++.. ..+.++.+|||+|||+|.++..+++.+.+..+|+++|+++.+++.|++++...+. ++++..+|+.+..+
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~- 86 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL- 86 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-
Confidence 3444444 3677899999999999999999998874458999999999999999999877654 49999999986444
Q ss_pred CcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 176 DEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 176 ~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+ ++||+|++ +.+++..++.++.+.|+|||.+++..+.
T Consensus 87 ~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 N---DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp S---SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred C---CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 2 68999986 3467788999999999999999988776
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=125.88 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=91.4
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|+++.... .++++..+|+...+++.
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~- 118 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPE- 118 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCT-
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCC-
Confidence 456777788899999999999999999999986 579999999999999999876543 34999999998766665
Q ss_pred CCCCccEEEec-----C--CChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++. . +++..++.++.++|+|||.+++..
T Consensus 119 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 119 --NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp --TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 789999863 3 456678999999999999999864
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=123.41 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=86.8
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGL 181 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~ 181 (311)
.+.+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.+.++.... .++.+..+|+.... ++. ..+.
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~-~~~~ 147 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRM-LIAM 147 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGG-GCCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcc-cCCc
Confidence 456788999999999999999999999877789999999999888887777664 34999999997521 111 1168
Q ss_pred ccEEEecCCChhh---HHHHHHhcccCCcEEEEec
Q 021550 182 ADSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 182 ~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~ 213 (311)
||+|+++++.++. ++.++.+.|+|||.+++..
T Consensus 148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999887744 3888999999999999843
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-14 Score=123.42 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=90.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~ 178 (311)
++..+... +.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...++..++++..+|+.... +..
T Consensus 61 ~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-- 134 (285)
T 4htf_A 61 VLAEMGPQ-KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE-- 134 (285)
T ss_dssp HHHHTCSS-CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS--
T ss_pred HHHhcCCC-CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC--
Confidence 44445443 689999999999999999887 57999999999999999999998888666999999998643 344
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++ +.+++..++.++.++|+|||.+++..+.
T Consensus 135 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 135 -TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp -SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred -CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 78999986 3567888999999999999999986554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=122.79 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=104.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+. .++.+|||+|||+|.++..++... +..+|+++|+++.+++.|++++...++.+ +++..+|+.. .++.
T Consensus 102 ~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-v~~~~~d~~~-~~~~--- 174 (276)
T 2b3t_A 102 ALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFS-ALAG--- 174 (276)
T ss_dssp HHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCSTTG-GGTT---
T ss_pred HHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEEcchhh-hccc---
Confidence 445554 677899999999999999999886 57899999999999999999999888875 9999999874 3433
Q ss_pred CCccEEEecCCC------------------------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-
Q 021550 180 GLADSIFLDLPQ------------------------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL- 228 (311)
Q Consensus 180 ~~~D~V~~d~~~------------------------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~- 228 (311)
+.||+|++++|. ...++..+.+.|+|||.+++..+. .+...+.+.+++
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~ 253 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILA 253 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHT
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHC
Confidence 689999998652 134678899999999999976543 345566666766
Q ss_pred cCceeeEEEee
Q 021550 229 NFTDIRTFEIL 239 (311)
Q Consensus 229 ~f~~~~~~e~~ 239 (311)
+|..++....+
T Consensus 254 Gf~~v~~~~d~ 264 (276)
T 2b3t_A 254 GYHDVETCRDY 264 (276)
T ss_dssp TCTTCCEEECT
T ss_pred CCcEEEEEecC
Confidence 78777665543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=127.16 Aligned_cols=122 Identities=19% Similarity=0.283 Sum_probs=97.1
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+.+.....+..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...++.+++++..+|+.+
T Consensus 48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (225)
T 3tr6_A 48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence 33444444555556668899999999999999999998755799999999999999999999999988789999999853
Q ss_pred CCCCCcC----CCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecC
Q 021550 172 QGFPDEF----SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 ~~~~~~~----~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++... .++||+|+++.+ ....+++.+.+.|+|||.+++...
T Consensus 128 -~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 128 -TLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp -HHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred -HHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 111100 057999998876 346789999999999999998544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=121.13 Aligned_cols=121 Identities=24% Similarity=0.217 Sum_probs=96.3
Q ss_pred eeecccHHHHHHhcC--CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCcEEE
Q 021550 91 ILYIADISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTV 164 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~--~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~ 164 (311)
+..|.....++..+. +.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...+. .+++.+
T Consensus 58 ~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 137 (226)
T 1i1n_A 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137 (226)
T ss_dssp ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred ecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEE
Confidence 334555556777775 78999999999999999999999876668999999999999999999887654 234999
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+|+....... +.||+|+++.+.. .++..+.+.|+|||.+++..+.
T Consensus 138 ~~~d~~~~~~~~---~~fD~i~~~~~~~-~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 138 VVGDGRMGYAEE---APYDAIHVGAAAP-VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EESCGGGCCGGG---CCEEEEEECSBBS-SCCHHHHHTEEEEEEEEEEESC
T ss_pred EECCcccCcccC---CCcCEEEECCchH-HHHHHHHHhcCCCcEEEEEEec
Confidence 999987432223 6899999876643 3678999999999999976543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=121.15 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=92.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC----cEEEEEecC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS----FVTVGVRDI 169 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~----~v~~~~~D~ 169 (311)
+.....++..+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...++.. ++++..+|+
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 93 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL 93 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence 3444557777777788999999999999999998863 45799999999999999999988777653 599999998
Q ss_pred CCCCCCCcCCCCccEEEec-----CCCh--hhHHHHHHhcccCCcEEEEecCC
Q 021550 170 QGQGFPDEFSGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d-----~~~~--~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.....+. ++||+|++. .+++ ..+++++.++|+|||.+++ .+.
T Consensus 94 ~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~-~~~ 142 (217)
T 3jwh_A 94 TYQDKRF---HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVT-TPN 142 (217)
T ss_dssp TSCCGGG---CSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEB
T ss_pred ccccccC---CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEE-ccC
Confidence 6444443 689999863 3433 6789999999999996664 443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=119.88 Aligned_cols=120 Identities=27% Similarity=0.279 Sum_probs=98.1
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
+..+.....++..+.+.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++...+..+ +++..+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 138 (215)
T 2yxe_A 60 ISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGT 138 (215)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGG
T ss_pred eCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcc
Confidence 3445566678888899999999999999999999999997666899999999999999999998888776 999999986
Q ss_pred CCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..++. .+.||+|+++....+ +.+.+.+.|+|||.+++..+.
T Consensus 139 -~~~~~--~~~fD~v~~~~~~~~-~~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 139 -LGYEP--LAPYDRIYTTAAGPK-IPEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp -GCCGG--GCCEEEEEESSBBSS-CCHHHHHTEEEEEEEEEEESS
T ss_pred -cCCCC--CCCeeEEEECCchHH-HHHHHHHHcCCCcEEEEEECC
Confidence 34442 168999997654332 346889999999999987654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=125.56 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=94.8
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+.....+..++...++.+|||+|||+|..+..+++.+.++++|+++|+++++++.|++++...++.++++++.+|+.+
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~- 142 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP- 142 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH-
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH-
Confidence 3443334444455567789999999999999999999855789999999999999999999998887779999999864
Q ss_pred CCCCc-----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 173 GFPDE-----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 173 ~~~~~-----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.++.. ..+.||+||++.. ....+++.+.++|+|||.|++-
T Consensus 143 ~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 143 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp HHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence 11100 0168999998764 4567899999999999999863
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=121.78 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=89.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.+|||+|||+|.+++.+|.. +..+|+++|+++.+++.+++|++.+++.+++++.++|+.+. ..+ +.||.|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~-~~~---~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-PGE---NIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-CCC---SCEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh-ccc---cCCCEE
Confidence 468999999999999999999987 46799999999999999999999999998899999999742 233 689999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++++| ....++..+.++|++||.+.++.
T Consensus 197 i~~~p~~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 197 LMGYVVRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence 99865 55678999999999999997763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=117.98 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~~~~~D~ 184 (311)
.++.+|||+|||+|.++..++.. +..+|+++|+++.+++.|++++...++. ++++.++|+.+.. ++. +.||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~---~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLS-GATLRRGAVAAVVAAGTT---SPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCS-CEEEEESCHHHHHHHCCS---SCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEccHHHHHhhccC---CCccE
Confidence 57899999999999999987775 4679999999999999999999998884 4999999987521 233 78999
Q ss_pred EEecCCCh------hhHHHHHHh--cccCCcEEEEecC
Q 021550 185 IFLDLPQP------WLAIPSAKK--MLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~------~~~l~~~~~--~LkpgG~lv~~~~ 214 (311)
|++++|-. ..++..+.+ +|+|||.+++-.+
T Consensus 117 i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 117 VLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 99987733 357788888 9999999997543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=122.66 Aligned_cols=121 Identities=19% Similarity=0.162 Sum_probs=97.4
Q ss_pred eeeecccHHHHHHhc--CCCCCCEEEEEcccccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHhcCC----C
Q 021550 90 QILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGV----S 159 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~g~----~ 159 (311)
.+..|...+.++..+ .+.++.+|||+|||+|.++..+++..+ +.++|+++|+++.+++.|++++...++ .
T Consensus 60 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 139 (227)
T 2pbf_A 60 TISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKI 139 (227)
T ss_dssp EECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSS
T ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccccc
Confidence 344566666677777 588999999999999999999999875 567999999999999999999988773 2
Q ss_pred CcEEEEEecCCCCC----CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 160 SFVTVGVRDIQGQG----FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 160 ~~v~~~~~D~~~~~----~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++++..+|+.... ... +.||+|+++.+.+ .++..+.+.|+|||.+++..+
T Consensus 140 ~~v~~~~~d~~~~~~~~~~~~---~~fD~I~~~~~~~-~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 140 DNFKIIHKNIYQVNEEEKKEL---GLFDAIHVGASAS-ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp TTEEEEECCGGGCCHHHHHHH---CCEEEEEECSBBS-SCCHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEECChHhcccccCccC---CCcCEEEECCchH-HHHHHHHHhcCCCcEEEEEEc
Confidence 34999999987522 223 6799999876644 367899999999999998655
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=120.96 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=92.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++...+...++++..+|+.+ ++
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~--- 127 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--FD--- 127 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--CC---
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--CC---
Confidence 46777788899999999999999999999776 359999999999999999999888877679999999864 33
Q ss_pred CCCccEEEec-----C--CChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++. . +++..++.++.++|+|||.+++..+
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 579999853 3 4567899999999999999988543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=123.39 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=100.8
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
...++.+.....+...+...++.+|||+|||+|.++..+++.+ +.++|+++|+++.+++.|++++...++.+++.+..+
T Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 4445666666667777777889999999999999999999986 478999999999999999999999888767999999
Q ss_pred cCCCCCCCCcC-CCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 168 DIQGQGFPDEF-SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 168 D~~~~~~~~~~-~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+.. .++... .+.||+|+++.+ ....+++.+.+.|+|||.+++.
T Consensus 113 d~~~-~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 113 DALQ-LGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp CGGG-SHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHH-HHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9874 211100 168999998765 4467899999999999999975
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=134.28 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=101.0
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
......+...+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+...|+. +.+..+|+....
T Consensus 87 d~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~ 164 (464)
T 3m6w_A 87 EPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALA 164 (464)
T ss_dssp CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHH
T ss_pred CHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhh
Confidence 333334667888999999999999999999999999876789999999999999999999999986 888889886422
Q ss_pred -CCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC---HHHHHHH
Q 021550 174 -FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC---IEQVQRS 222 (311)
Q Consensus 174 -~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~ 222 (311)
+.. +.||+|++|+|+. ..++..+.++|+|||+|+ |+.| .+..+..
T Consensus 165 ~~~~---~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-ysTCs~~~eEne~v 240 (464)
T 3m6w_A 165 EAFG---TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLV-YSTCTFAPEENEGV 240 (464)
T ss_dssp HHHC---SCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEE-EEESCCCGGGTHHH
T ss_pred hhcc---ccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEeccCchhcCHHH
Confidence 122 6899999998851 457889999999999998 4333 2334444
Q ss_pred HHHHhh
Q 021550 223 CESLRL 228 (311)
Q Consensus 223 ~~~l~~ 228 (311)
++.+.+
T Consensus 241 v~~~l~ 246 (464)
T 3m6w_A 241 VAHFLK 246 (464)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=120.41 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=91.7
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC----cEEEEEec
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS----FVTVGVRD 168 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~----~v~~~~~D 168 (311)
++.....++..+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...++.+ ++++..+|
T Consensus 14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence 34444556677776788999999999999999998863 45899999999999999999988776653 59999999
Q ss_pred CCCCCCCCcCCCCccEEEec-----CCCh--hhHHHHHHhcccCCcEEEE
Q 021550 169 IQGQGFPDEFSGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d-----~~~~--~~~l~~~~~~LkpgG~lv~ 211 (311)
+.....+. ++||+|++. .+++ ..+++++.+.|+|||.+++
T Consensus 93 ~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~ 139 (219)
T 3jwg_A 93 LVYRDKRF---SGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS 139 (219)
T ss_dssp SSSCCGGG---TTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred cccccccc---CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 96544444 789999853 4444 5789999999999996664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-14 Score=117.91 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=81.4
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcCCCC
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGL 181 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~~~~ 181 (311)
+.+.+|.+|||+|||+|.++..+++.++ .++|+++|+++.+++.+.+..... . ++.++.+|+.... .+. .++
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~-~v~~~~~d~~~~~~~~~~--~~~ 126 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--N-NIIPLLFDASKPWKYSGI--VEK 126 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--S-SEEEECSCTTCGGGTTTT--CCC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--C-CeEEEEcCCCCchhhccc--ccc
Confidence 4578899999999999999999999875 689999999999887666655442 2 3888888886420 111 168
Q ss_pred ccEEEecCCChhh---HHHHHHhcccCCcEEEEec
Q 021550 182 ADSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 182 ~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~ 213 (311)
||+|+++.+.+.. ++.++.++|||||.+++..
T Consensus 127 fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 127 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999998765543 3899999999999999863
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-15 Score=130.46 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=95.8
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+.....+..++...++.+|||+|||+|..+..+++.++++++|+++|+++++++.|++++...++.++++++.+|+.+
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~- 123 (242)
T 3r3h_A 45 APEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD- 123 (242)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH-
T ss_pred CHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-
Confidence 3444444555556667889999999999999999998766799999999999999999999999988779999999864
Q ss_pred CCCCc----CCCCccEEEecCCC--hhhHHHHHHhcccCCcEEEEe
Q 021550 173 GFPDE----FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 173 ~~~~~----~~~~~D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.++.. ..++||+||++.+. ...+++.+.++|+|||.|++-
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence 11110 01689999998763 346799999999999999973
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=122.84 Aligned_cols=143 Identities=21% Similarity=0.158 Sum_probs=90.1
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-- 176 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-- 176 (311)
++..+.. .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...+. ++++..+|+.+ .++.
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~~~ 96 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIERA 96 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------CCHHHHHH-HHHHHH
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhhhh
Confidence 5555554 788999999999999999999984 567999999999999999999887776 38888888874 3221
Q ss_pred cCCCCccEEEecCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHH
Q 021550 177 EFSGLADSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 225 (311)
...++||+|++++|-. ..++..+.++|+|||.++++.....+...+.+.
T Consensus 97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 176 (215)
T 4dzr_A 97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARL 176 (215)
T ss_dssp HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHH
T ss_pred hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHH
Confidence 0116799999976621 456788899999999954454445556677777
Q ss_pred Hh--h-cCceeeEEEeeceeeEEe
Q 021550 226 LR--L-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 226 l~--~-~f~~~~~~e~~~r~~~v~ 246 (311)
+. + +|..++..........+.
T Consensus 177 l~~~~~gf~~~~~~~~~~~~~r~~ 200 (215)
T 4dzr_A 177 FAPWRERGFRVRKVKDLRGIDRVI 200 (215)
T ss_dssp TGGGGGGTEECCEEECTTSCEEEE
T ss_pred HHHhhcCCceEEEEEecCCCEEEE
Confidence 77 5 787777776655443333
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=121.03 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=93.5
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.+.....+..++...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.+++++..+|+.
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 118 (210)
T 3c3p_A 39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL 118 (210)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence 34444433333344455778999999999999999999875478999999999999999999998888777999999986
Q ss_pred CC-CCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 171 GQ-GFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 171 ~~-~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. .... + ||+|+++.+ ....+++.+.+.|+|||.+++.
T Consensus 119 ~~~~~~~---~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 119 GIAAGQR---D-IDILFMDCDVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp HHHTTCC---S-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHhccCC---C-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 41 2222 6 999998754 5567899999999999999873
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=123.60 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=94.3
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
+.....+..++...++.+|||+|||+|..+..+++.+.++++|+++|+++++++.|++++...++.+++++..+|+.+.
T Consensus 56 ~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 135 (237)
T 3c3y_A 56 PLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLAL 135 (237)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3333334444556678899999999999999999998657999999999999999999999999877799999998641
Q ss_pred -CCCCc--CCCCccEEEecCCC--hhhHHHHHHhcccCCcEEEEe
Q 021550 173 -GFPDE--FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 173 -~~~~~--~~~~~D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+... ..+.||+||+|... ...+++.+.+.|+|||.+++-
T Consensus 136 ~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 136 DNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 11100 01689999998653 357899999999999999874
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=117.22 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHhc-CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--C--
Q 021550 100 VIMYL-ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--F-- 174 (311)
Q Consensus 100 i~~~~-~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~-- 174 (311)
++..+ ...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...++.+++++..+|+.+.. +
T Consensus 35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 44444 3467899999999999999988874 467999999999999999999998887666999999987411 1
Q ss_pred CCcCCCCccEEEecCC----ChhhHHHHH--HhcccCCcEEEEecCC
Q 021550 175 PDEFSGLADSIFLDLP----QPWLAIPSA--KKMLKQDGILCSFSPC 215 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~----~~~~~l~~~--~~~LkpgG~lv~~~~~ 215 (311)
+. +.||+|+++++ .....+..+ .++|+|||.+++..+.
T Consensus 113 ~~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 113 EK---LQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp TT---CCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cC---CCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 13 68999999877 234566666 8889999999986554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=123.13 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=93.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++...++.+++++..+|+.+ ++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~--- 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FA--- 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CC---
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--CC---
Confidence 46777888899999999999999999999886 469999999999999999999988887779999999864 33
Q ss_pred CCCccEEEec-----C--CChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.||+|++. . +++..++.++.++|+|||.+++..+
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 679999864 4 3567899999999999999998543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=114.20 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=96.4
Q ss_pred HHHhcCC--CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLEL--VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~--~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++..+.. .++.+|||+|||+|.++..+++. . +|+++|+++.+++. .+++++..+|+.+ .++.
T Consensus 13 l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~- 76 (170)
T 3q87_B 13 LMDALEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQ- 76 (170)
T ss_dssp HHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCG-
T ss_pred HHHHHHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hccc-
Confidence 4444544 67789999999999999999877 2 99999999999886 2348899999974 5554
Q ss_pred CCCCccEEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEee
Q 021550 178 FSGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEIL 239 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~ 239 (311)
++||+|++++|-. ..++..+.+.| |||.+++..+...+..++.+.+++ +|......+..
T Consensus 77 --~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 77 --ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRK 150 (170)
T ss_dssp --GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred --CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeec
Confidence 7899999987633 46788888888 999999888777788888888887 78766655543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=126.36 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=108.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--cEEEEEecCCCCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--~v~~~~~D~~~~~~~~ 176 (311)
.++..+...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|++++..+++.+ ++++...|+.. .++.
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~ 290 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP 290 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence 47788888888999999999999999999984 67899999999999999999999888653 48889999984 5555
Q ss_pred cCCCCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 177 EFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|++++|-. +.++..+.+.|+|||.+++......... ..+.+.|.+.+.+.. ...|.|.
T Consensus 291 ---~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~---~~l~~~fg~~~~~a~-~~~F~V~ 363 (375)
T 4dcm_A 291 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNCTTIAT-NNKFVVL 363 (375)
T ss_dssp ---TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHH---HHHHHHHSCCEEEEE-CSSEEEE
T ss_pred ---CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHH---HHHHHhcCCEEEEee-CCCEEEE
Confidence 7899999987732 3578999999999999998755443332 333334455554433 3556665
Q ss_pred ee
Q 021550 247 QW 248 (311)
Q Consensus 247 ~~ 248 (311)
..
T Consensus 364 ~~ 365 (375)
T 4dcm_A 364 KA 365 (375)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=133.03 Aligned_cols=118 Identities=25% Similarity=0.309 Sum_probs=96.0
Q ss_pred eeeecccHH-H-HHHhcCCC--CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 90 QILYIADIS-F-VIMYLELV--PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 90 ~~~~~~~~~-~-i~~~~~~~--~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
..++..+.+ + +...+++. +|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+...|+.+ +.+.
T Consensus 95 G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~ 173 (479)
T 2frx_A 95 GLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALT 173 (479)
T ss_dssp TSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEE
T ss_pred cEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEE
Confidence 334444443 3 34667777 99999999999999999999998767999999999999999999999999876 9999
Q ss_pred EecCCCCCC-CCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEE
Q 021550 166 VRDIQGQGF-PDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 166 ~~D~~~~~~-~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~ 211 (311)
.+|+..... .. +.||.|++|+|+. ..+|..+.++|||||+|+.
T Consensus 174 ~~D~~~~~~~~~---~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy 244 (479)
T 2frx_A 174 HFDGRVFGAAVP---EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244 (479)
T ss_dssp CCCSTTHHHHST---TCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eCCHHHhhhhcc---ccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999875221 22 6899999988741 2468889999999999984
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=124.69 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=96.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+.....++..+++.++.+|||+|||+|.++..+++.....++|+++|+++++++.|++++...++.+ +++..+|+.+.
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~ 138 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYG 138 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhc
Confidence 44556678888999999999999999999999999986435789999999999999999999888877 99999999753
Q ss_pred CCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.... ++||+|+++.+... +.+.+.+.|+|||.+++....
T Consensus 139 ~~~~---~~fD~Iv~~~~~~~-~~~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 139 VPEF---SPYDVIFVTVGVDE-VPETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CGGG---CCEEEEEECSBBSC-CCHHHHHHEEEEEEEEEEBCB
T ss_pred cccC---CCeEEEEEcCCHHH-HHHHHHHhcCCCcEEEEEECC
Confidence 2223 68999998755332 336788999999999986543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=114.13 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=90.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+..+ +++..+|+....+ .
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~-- 95 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF-D-- 95 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC-C--
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC-C--
Confidence 4667777778899999999999999999887 4699999999999999999998888765 9999999986544 3
Q ss_pred CCCccEEEecC-----C--ChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++.. + +...++.++.++|+|||.+++..
T Consensus 96 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 96 -RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp -CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 7899998642 2 45678999999999999987753
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=116.89 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC----CcEEEEEecCCCCCCCCcCCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...++. .++.+...|+....++. +.
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD---SS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT---TC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC---Cc
Confidence 357899999999999999999987 469999999999999999998776652 34899999998655555 78
Q ss_pred ccEEEec-----CCChh---hHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLD-----LPQPW---LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d-----~~~~~---~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||+|++. .+++. .+++++.++|+|||.+++..+
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999863 44665 799999999999999988643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=116.96 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++..+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...+ ++.+..+|+....++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~- 107 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE- 107 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-
Confidence 34555555 5678999999999999999999985 67899999999999999999876544 499999999864443
Q ss_pred cCCCCccEEEecC-----CChh--hHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDL-----PQPW--LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~-----~~~~--~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++.. +++. .+++++.++|+|||.+++..
T Consensus 108 ---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 108 ---EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp ---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6899998643 3333 48999999999999999864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=121.65 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=92.1
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQG 171 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~ 171 (311)
+|..+...+......++.+|||+|||+|.++..+++.+.+..+|+++|+++.+++.|++++... +...++++..+|+.+
T Consensus 21 y~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 21 YPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp CCHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred CCHHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 3444433444334468899999999999999999987656799999999999999999998876 444569999999976
Q ss_pred CCCCC---cCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEE
Q 021550 172 QGFPD---EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 172 ~~~~~---~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~ 211 (311)
..++. ...++||+|++... ++..++.++.++|+|||.|++
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 44322 00158999986322 778899999999999999987
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=116.33 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=90.0
Q ss_pred HHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCC
Q 021550 99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD 176 (311)
Q Consensus 99 ~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~ 176 (311)
.++..+. ..++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...++.+++++..+|+.+. ....
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 3555555 678899999999999999998887 45799999999999999999999888876699999998641 1112
Q ss_pred cCCCCccEEEecCCCh----hhHHHHHH--hcccCCcEEEEecCCH
Q 021550 177 EFSGLADSIFLDLPQP----WLAIPSAK--KMLKQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~----~~~l~~~~--~~LkpgG~lv~~~~~~ 216 (311)
+.||+|+++++-. ...+..+. +.|+|||.+++..+..
T Consensus 99 ---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 99 ---GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp ---SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ---CCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 5699999997742 34566666 8999999999865543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-14 Score=131.42 Aligned_cols=129 Identities=29% Similarity=0.290 Sum_probs=101.3
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG- 173 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~- 173 (311)
.....+...+++.+|.+|||+|||+|..+.+++..+++.++|+++|+++.+++.+++|+.+.|+.+ +.+..+|+....
T Consensus 92 ~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~ 170 (456)
T 3m4x_A 92 PSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVP 170 (456)
T ss_dssp TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhh
Confidence 333356678889999999999999999999999998767899999999999999999999999986 999999886421
Q ss_pred CCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC---HHHHHHHH
Q 021550 174 FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC---IEQVQRSC 223 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~ 223 (311)
... +.||.|++|+|+. ..+|..+.++|+|||.|+ |+.| .+..+..+
T Consensus 171 ~~~---~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTCs~~~eEne~vv 246 (456)
T 3m4x_A 171 HFS---GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLI-YSTCTFAPEENEEII 246 (456)
T ss_dssp HHT---TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEE-EEESCCCGGGTHHHH
T ss_pred hcc---ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEEeecccccCHHHH
Confidence 112 6899999998831 157889999999999988 4333 23334444
Q ss_pred HHHhh
Q 021550 224 ESLRL 228 (311)
Q Consensus 224 ~~l~~ 228 (311)
..+.+
T Consensus 247 ~~~l~ 251 (456)
T 3m4x_A 247 SWLVE 251 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=125.27 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=89.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.++.+|||+|||+|.++..++....+..+|+++|+++.+++.|++++...++.+++++..+|+.+..++ +.||
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD 189 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYD 189 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeE
Confidence 346789999999999999999886434467899999999999999999999888887899999999864443 6899
Q ss_pred EEEecC-----CChhh---HHHHHHhcccCCcEEEEec
Q 021550 184 SIFLDL-----PQPWL---AIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d~-----~~~~~---~l~~~~~~LkpgG~lv~~~ 213 (311)
+|+++. +++.. ++.++.+.|+|||.+++..
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 998743 45544 6999999999999999754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=116.32 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++... .++.+..+|+....++.
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~-- 105 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQ-- 105 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCT--
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCC--
Confidence 4677778788999999999999999999887 234999999999999999986532 24899999998655555
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++ +.+++..+++++.++|+|||.+++..
T Consensus 106 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 106 -DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp -TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 78999985 34577889999999999999998754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-13 Score=112.95 Aligned_cols=102 Identities=21% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...+ .++++..+|+....++. ++||+|+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~---~~~D~v~ 108 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFED---KTFDYVI 108 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCT---TCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCC---CcEEEEE
Confidence 458899999999999999888872 399999999999999999988766 34899999998655554 7899998
Q ss_pred ecCC-------ChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 187 LDLP-------QPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 187 ~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
++.+ ++..++.++.+.|+|||.+++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 7654 34578999999999999999876653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-13 Score=112.96 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=84.9
Q ss_pred HHHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++..+. +.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++ .+..+ +++..+|+... ++.
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~-~~~~~~d~~~~-~~~ 105 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDN-VEFRQQDLFDW-TPD 105 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTT-EEEEECCTTSC-CCS
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCC-eEEEecccccC-CCC
Confidence 34555554 778899999999999999999988 4799999999999999987 45444 99999999854 554
Q ss_pred cCCCCccEEEec-----CCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d-----~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++. .+++ ..++.++.+.|+|||.+++..
T Consensus 106 ---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 106 ---RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp ---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 789999863 3443 678999999999999998763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=119.88 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=82.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCC--CCCcCCCC-cc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG--FPDEFSGL-AD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~--~~~~~~~~-~D 183 (311)
++.+|||+|||+|.++..++.. +..+|+++|+++.+++.|++++...++. +++++..+|+.+.. ++. +. ||
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~fD 127 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN---QPHFD 127 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS---SCCEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc---CCCCC
Confidence 6789999999999999987766 3479999999999999999999998873 34999999986421 123 67 99
Q ss_pred EEEecCC----ChhhHHHHH--HhcccCCcEEEEecC
Q 021550 184 SIFLDLP----QPWLAIPSA--KKMLKQDGILCSFSP 214 (311)
Q Consensus 184 ~V~~d~~----~~~~~l~~~--~~~LkpgG~lv~~~~ 214 (311)
+|++++| ....++..+ .++|+|||.+++...
T Consensus 128 ~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 128 VVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp EEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 9999987 233567777 567999999987544
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=116.18 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=104.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.+|||+|||+|.+++.+++. ++..+|+++|+++.+++.|++|+..+++.+++++..+|..+ .+... ..||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~-~~~~~--~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS-AFEEA--DNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGG--GCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccccc--cccCEE
Confidence 467899999999999999999987 46779999999999999999999999998889999999984 34331 369998
Q ss_pred Ee-cCCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCce--eeEEEeeceeeEEeee
Q 021550 186 FL-DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTD--IRTFEILLRTYEIRQW 248 (311)
Q Consensus 186 ~~-d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~--~~~~e~~~r~~~v~~~ 248 (311)
++ .+.. -..++......|+++|+|++ +|.. ....+.++|.+ +|.- ...++.--+-|.+...
T Consensus 95 viaGmGg~lI~~IL~~~~~~l~~~~~lIl-qp~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~ 161 (230)
T 3lec_A 95 TICGMGGRLIADILNNDIDKLQHVKTLVL-QPNN-REDDLRKWLAANDFEIVAEDILTENDKRYEILVV 161 (230)
T ss_dssp EEEEECHHHHHHHHHHTGGGGTTCCEEEE-EESS-CHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEE
T ss_pred EEeCCchHHHHHHHHHHHHHhCcCCEEEE-ECCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 74 4432 34578888889999999885 4433 46778888887 5543 3344445567777654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=115.58 Aligned_cols=100 Identities=18% Similarity=0.098 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++ +|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+. ++.+..+|+....++. +.||+|
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~fD~v 98 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVA---DAWEGI 98 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCT---TTCSEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCc---CCccEE
Confidence 4566 9999999999999988876 46999999999999999999887765 3899999998655555 789999
Q ss_pred EecCC-----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLP-----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~-----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++... +...++.++.++|+|||.+++..+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 99 VSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred EEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 86432 345789999999999999998654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-14 Score=121.42 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=101.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++..+++. +++..+|+.. .++. ++||+|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~-~~~~---~~fD~V 188 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPF---GPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGG---CCEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh-cCcC---CCCCEE
Confidence 578899999999999999988875 2 39999999999999999999988875 8888888864 3444 689999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEE
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e 237 (311)
+++.+.. ..++..+.+.|+|||.+++......+...+.+.+++ +|..++..+
T Consensus 189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 189 VANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred EECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEec
Confidence 9886533 367899999999999999877777788888888887 787666544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=113.52 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=105.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+.+.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++ .. ++++..+| ..++.
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~-~v~~~~~d---~~~~~--- 73 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FD-SVITLSDP---KEIPD--- 73 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CT-TSEEESSG---GGSCT---
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CC-CcEEEeCC---CCCCC---
Confidence 5566677889999999999999999999874 4999999999999999987 22 48888888 33555
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCHH------------HHHHHHHHHhhcCceeeEEEeecee
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIE------------QVQRSCESLRLNFTDIRTFEILLRT 242 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~------------~~~~~~~~l~~~f~~~~~~e~~~r~ 242 (311)
+.||+|++ +.+++..+++++.+.|+|||.+++...... ...++.+.+. +|..++..+.....
T Consensus 74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~~~~~ 152 (170)
T 3i9f_A 74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFNPTPYH 152 (170)
T ss_dssp TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEECSSTTE
T ss_pred CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccCCCCce
Confidence 78999985 345778899999999999999998633211 2345566666 88888877777777
Q ss_pred eEEeeee
Q 021550 243 YEIRQWR 249 (311)
Q Consensus 243 ~~v~~~~ 249 (311)
|.+....
T Consensus 153 ~~l~~~~ 159 (170)
T 3i9f_A 153 FGLVLKR 159 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8777654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=118.60 Aligned_cols=119 Identities=27% Similarity=0.326 Sum_probs=97.3
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
.+..+.....++..+++.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...++.+ +++..+|+
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~ 149 (235)
T 1jg1_A 73 TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG 149 (235)
T ss_dssp EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG
T ss_pred eeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc
Confidence 344556666788888999999999999999999999999863 899999999999999999999888877 99999998
Q ss_pred CCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
. ..++.. ..||+|+++...+ .+...+.+.|+|||.+++..+.
T Consensus 150 ~-~~~~~~--~~fD~Ii~~~~~~-~~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 150 S-KGFPPK--APYDVIIVTAGAP-KIPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp G-GCCGGG--CCEEEEEECSBBS-SCCHHHHHTEEEEEEEEEEECS
T ss_pred c-cCCCCC--CCccEEEECCcHH-HHHHHHHHhcCCCcEEEEEEec
Confidence 4 455541 4599999765433 2446889999999999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=126.49 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-CCcEEEEE
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-SSFVTVGV 166 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~g~-~~~v~~~~ 166 (311)
..+..++..+++.++++|||+|||+|.+++.++... +..+|+|+|+++.+++.|+++. ...|+ ..++++++
T Consensus 160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 335568888999999999999999999999999875 4557999999999999998764 34455 24699999
Q ss_pred ecCCCCCCCCcCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 167 RDIQGQGFPDEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 167 ~D~~~~~~~~~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+.+.++... ...+|+|+++.. +....|.++++.|||||+|++..+
T Consensus 239 GD~~~lp~~d~-~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 239 GDFLSEEWRER-IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CCTTSHHHHHH-HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CcccCCccccc-cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 99986444210 036899998654 455788899999999999998633
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-14 Score=117.43 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=82.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~~~~D~V~ 186 (311)
++.+|||+|||+|.++..++.. ...+|+++|+++.+++.|++++...++. ++++..+|+.+ ..... +.||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~D~~~~~~~~~---~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKG---TPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCC---CCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHhhcC---CCCCEEE
Confidence 6789999999999999987776 2469999999999999999999988874 49999999864 22233 6899999
Q ss_pred ecCC----ChhhHHHHHHh--cccCCcEEEEecCC
Q 021550 187 LDLP----QPWLAIPSAKK--MLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~d~~----~~~~~l~~~~~--~LkpgG~lv~~~~~ 215 (311)
+++| ....++..+.+ +|+|||.+++....
T Consensus 128 ~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 128 VDPPFRRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 9987 34456777755 59999999876543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=118.34 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=89.8
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++ .. ++.+..+|+.... +.
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----LP-NTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----ST-TSEEEECCTTTCC-CS
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CC-CcEEEECChhhcC-cc
Confidence 3357777788889999999999999999999986 568999999999999999987 22 3889999997644 43
Q ss_pred cCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++. .+++..++.++.++|+|||.+++..+
T Consensus 94 ---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 94 ---QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp ---SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 789999864 35778899999999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-14 Score=121.91 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=96.3
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.+.....+..++...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|++++...++.+++++..+|+.
T Consensus 52 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 131 (229)
T 2avd_A 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 131 (229)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHH
Confidence 34444455555556667889999999999999999999875578999999999999999999999888767999999985
Q ss_pred CC--CCCCc-CCCCccEEEecCCC--hhhHHHHHHhcccCCcEEEEe
Q 021550 171 GQ--GFPDE-FSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 171 ~~--~~~~~-~~~~~D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. .+... ..+.||+|+++.+. ...+++.+.+.|+|||.+++.
T Consensus 132 ~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 132 ETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 31 11100 00479999998653 357899999999999999984
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.46 Aligned_cols=119 Identities=20% Similarity=0.155 Sum_probs=94.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|++|+..+++.+++++.++|+.. .++
T Consensus 115 ~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~---- 187 (284)
T 1nv8_A 115 ALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK---- 187 (284)
T ss_dssp HHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG----
T ss_pred HHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc----
Confidence 344444446789999999999999999988 6799999999999999999999999988779999999974 332
Q ss_pred CCc---cEEEecCCCh------------------------hhHHHHHH-hcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 180 GLA---DSIFLDLPQP------------------------WLAIPSAK-KMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 180 ~~~---D~V~~d~~~~------------------------~~~l~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+.| |+|++|+|.. ..++..+. +.|+|||.+++..+. .+...+.+.+
T Consensus 188 ~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~~ 261 (284)
T 1nv8_A 188 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIV 261 (284)
T ss_dssp GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTS
T ss_pred cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHHH
Confidence 468 9999986521 15789999 999999999976553 4444444443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-14 Score=122.87 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=94.9
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+.+.....+..++...++.+|||+|||+|..+..+++.+.++++|+++|+++++++.|++++...++.+++++..+|+.+
T Consensus 56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34444444545555667889999999999999999998755789999999999999999999988887779999999753
Q ss_pred C--CCCCc-CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 172 Q--GFPDE-FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~--~~~~~-~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. .++.. ..+.||+||++.+ ....+++.+.+.|+|||.+++-
T Consensus 136 ~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 136 TLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 1 11100 0057999998865 3457899999999999999974
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=120.67 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=88.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|.++..+++ +..+|+++|+++.+++.|+++. . ++.+..+|+...++ +
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~-~ 115 (279)
T 3ccf_A 46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----P-HLHFDVADARNFRV-D 115 (279)
T ss_dssp CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----T-TSCEEECCTTTCCC-S
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----C-CCEEEECChhhCCc-C
Confidence 33467778888999999999999999999988 3689999999999999998764 2 37889999976444 2
Q ss_pred cCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 177 EFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 177 ~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++. .+++..++.++.++|+|||.+++..+.
T Consensus 116 ---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 116 ---KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp ---SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 689999863 467788999999999999999886543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=126.63 Aligned_cols=110 Identities=26% Similarity=0.400 Sum_probs=93.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~ 176 (311)
.+...+++.++.+|||+|||+|..+.+++..+++.++|+++|+++.+++.+++++...|+.+ +.+..+|+.... ++.
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhcc
Confidence 45677889999999999999999999999998555899999999999999999999999876 999999987532 332
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++|+|+. ..++..+.++|+|||.+++.
T Consensus 329 ---~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~ 388 (450)
T 2yxl_A 329 ---EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT 388 (450)
T ss_dssp ---SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5799999987741 35789999999999999854
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=125.74 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=93.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHhcCCC-CcEEEE
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASA-------REDFERTGVS-SFVTVG 165 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-------~~~~~~~g~~-~~v~~~ 165 (311)
|..++.++..+++.++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.| ++++...|+. .++++.
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 5566678888999999999999999999999999986 456899999999999988 8888888842 349999
Q ss_pred EecCCCCC--CCCcCCCCccEEEecC----CChhhHHHHHHhcccCCcEEEEecC
Q 021550 166 VRDIQGQG--FPDEFSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 ~~D~~~~~--~~~~~~~~~D~V~~d~----~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|..... ++. ..+.||+|+++. ++...+|.++.+.|+|||.|++..+
T Consensus 307 ~gD~~~~~~~~~~-~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 307 LKKSFVDNNRVAE-LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp ESSCSTTCHHHHH-HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EcCcccccccccc-ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 87654222 210 016799999752 3445678899999999999998644
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=121.06 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=97.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--cCC-CCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGV-SSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~g~-~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
..+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. .++ ..+++++.+|+... .... +.|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~f 164 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK---NEF 164 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS---SCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC---CCc
Confidence 345899999999999999998874 468999999999999999998754 223 34599999997641 1122 679
Q ss_pred cEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEe
Q 021550 183 DSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
|+|++|++++ .++++.+.+.|+|||.+++...+ .+....+.+.+++.|..+..+..
T Consensus 165 D~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~ 234 (296)
T 1inl_A 165 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLG 234 (296)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred eEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEe
Confidence 9999988766 57899999999999999987443 34566677777777877766554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=114.29 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=105.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.+|||+|||+|.+++.+++. ++..+|+++|+++.+++.|++|+..+++.+++++..+|..+ .+... ..||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~-~~~~~--~~~D~I 94 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA-VIEKK--DAIDTI 94 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGG--GCCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh-ccCcc--ccccEE
Confidence 467899999999999999999987 46679999999999999999999999998889999999984 44430 359998
Q ss_pred Ee-cCCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCce--eeEEEeeceeeEEeee
Q 021550 186 FL-DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTD--IRTFEILLRTYEIRQW 248 (311)
Q Consensus 186 ~~-d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~--~~~~e~~~r~~~v~~~ 248 (311)
++ .+.. -..++......|+++++|++. |. .....+.++|.+ +|.- ...++.--+-|.+...
T Consensus 95 viagmGg~lI~~IL~~~~~~L~~~~~lIlq-~~-~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~ 161 (244)
T 3gnl_A 95 VIAGMGGTLIRTILEEGAAKLAGVTKLILQ-PN-IAAWQLREWSEQNNWLITSEAILREDNKVYEIMVL 161 (244)
T ss_dssp EEEEECHHHHHHHHHHTGGGGTTCCEEEEE-ES-SCHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEE
T ss_pred EEeCCchHHHHHHHHHHHHHhCCCCEEEEE-cC-CChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEE
Confidence 75 3332 345788889999999998854 43 246777788877 6654 3444555667777654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=117.10 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=85.3
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++..+. ..++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++.. ++++..+|+.+. .++
T Consensus 33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~-- 101 (250)
T 2p7i_A 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLP-- 101 (250)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCS--
T ss_pred HHHHHHhhcCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcC--
Confidence 444433 457789999999999999999876 34899999999999999987532 499999999754 444
Q ss_pred CCCccEEEe-----cCCChhhHHHHHH-hcccCCcEEEEecCCH
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAK-KMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~-~~LkpgG~lv~~~~~~ 216 (311)
++||+|++ +.+++..+++++. ++|+|||.+++..|..
T Consensus 102 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 102 -RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp -SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred -CcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 78999986 4568889999999 9999999999876543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=116.60 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-----------CCCcEEEEEec
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-----------VSSFVTVGVRD 168 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-----------~~~~v~~~~~D 168 (311)
.+..+.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.|+++..... ...++++.++|
T Consensus 14 ~~~~l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 445567788999999999999999999987 4699999999999999998764210 01348999999
Q ss_pred CCCCCCCCcCCCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEE
Q 021550 169 IQGQGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv 210 (311)
+.+..++.. ++||+|+.. .+ +...+++++.++|||||+++
T Consensus 91 ~~~l~~~~~--~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 91 FFALTARDI--GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp CSSSTHHHH--HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cccCCcccC--CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 986443210 479999842 22 22357899999999999833
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=113.65 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=87.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +++..+|+.... +. +.||+|++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~---~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SE---PPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CC---SCEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-cc---CCcCEEEE
Confidence 57899999999999999999885 57899999999999999999999888877 999999997532 33 68999997
Q ss_pred cC-CChhhHHHHHHhcccCCcEEEEecC
Q 021550 188 DL-PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 188 d~-~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. .....++..+.+.|+|||.+++...
T Consensus 139 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 139 RAFASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SCSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 64 4556789999999999999988644
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=118.62 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=90.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHhcCCCCcEEEEEec-CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQ------RAASAREDFERTGVSSFVTVGVRD-IQG 171 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~------~~~~a~~~~~~~g~~~~v~~~~~D-~~~ 171 (311)
.++..+.+.++.+|||+|||+|.++..+++..++..+|+++|+++. +++.|++++...++.+++++..+| ...
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 4677788899999999999999999999998766689999999997 999999999888876669999998 322
Q ss_pred --CCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 172 --QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 --~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.++++ ++||+|++ +.+++..+++.+..+++|||.+++.
T Consensus 114 ~~~~~~~---~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 114 DLGPIAD---QHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp CCGGGTT---CCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEE
T ss_pred ccCCCCC---CCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 23344 78999986 3456666666667777779999885
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=117.16 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=90.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+++.|+.+ +.++.+|+.........
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGG
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccc
Confidence 46678899999999999999999999999998777999999999999999999999999876 99999998753221100
Q ss_pred CCCccEEEecCCCh------------h-----------------hHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQP------------W-----------------LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~------------~-----------------~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...||.|++|+|+. | .+|..+.++|+ ||+|+ |+.|
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv-YsTC 235 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV-YSTC 235 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE-EEES
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE-EECC
Confidence 14699999987731 1 24667777776 88766 6544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-14 Score=122.04 Aligned_cols=101 Identities=22% Similarity=0.176 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D 183 (311)
..+|.+|||||||+|..+..+++.. ..+++++|+++.+++.|+++....+. .+.++.+|+.. ..+++ ++||
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~---~~FD 130 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPD---GHFD 130 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCT---TCEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccc---cCCc
Confidence 4688999999999999999988762 36899999999999999998876653 48888888754 23455 7899
Q ss_pred EEEecCC----------ChhhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFLDLP----------QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d~~----------~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.|+.|.. ++..++.++.++|||||+|+++.
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 9987643 34568899999999999998753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-13 Score=112.26 Aligned_cols=108 Identities=23% Similarity=0.163 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+ ++++..+|+.... +.
T Consensus 43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~--- 112 (216)
T 3ofk_A 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA--- 112 (216)
T ss_dssp HHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS---
T ss_pred HHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC---
Confidence 445667788899999999999999999887 3699999999999999999876533 4999999998643 33
Q ss_pred CCccEEEec-----CCCh---hhHHHHHHhcccCCcEEEEecCCHH
Q 021550 180 GLADSIFLD-----LPQP---WLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 180 ~~~D~V~~d-----~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
++||+|++. .+++ ..++.++.++|+|||.+++..+...
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 789999863 3454 4679999999999999998665443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-13 Score=116.10 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=100.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++... .++++..+|+....++.
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~-- 156 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP-- 156 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS--
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC--
Confidence 35666677788999999999999999999884 578999999999999999886543 34999999998655555
Q ss_pred CCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEEecCCH---------------HHHHHHHHHHhh-cCceeeE
Q 021550 179 SGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSPCI---------------EQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 179 ~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~-~f~~~~~ 235 (311)
+.||+|++. .+ ++..++.++.++|+|||.+++..+.. .....+.+.+++ +|..++.
T Consensus 157 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 157 -NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred -CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 789999863 22 35678999999999999999865311 123556666666 7876654
Q ss_pred E
Q 021550 236 F 236 (311)
Q Consensus 236 ~ 236 (311)
.
T Consensus 236 ~ 236 (254)
T 1xtp_A 236 A 236 (254)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-14 Score=122.07 Aligned_cols=122 Identities=19% Similarity=0.212 Sum_probs=98.1
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.|.....+..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...++.+++.+..+|+.
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 45566666666777777899999999999999999999975478999999999999999999998888777999999975
Q ss_pred CCCCCCc-------------C-C-CCccEEEecCC--ChhhHHHHHHhcccCCcEEEEec
Q 021550 171 GQGFPDE-------------F-S-GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 171 ~~~~~~~-------------~-~-~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. .++.. . . +.||+|+++.. ....+++.+.+.|+|||.+++..
T Consensus 123 ~-~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 123 E-TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp H-HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred H-HHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3 11100 0 1 46999998754 33478899999999999999754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=119.32 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=92.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~~~~D~ 184 (311)
+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...+...++.+..+|+....+ +. +.||+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~fD~ 136 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG---KEFDV 136 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS---SCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCC---CCcCE
Confidence 578899999999999999988876 4569999999999999999999887776669999999986555 34 78999
Q ss_pred EEecCC---------ChhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 185 IFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 185 V~~d~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
|++... ++..++.++.++|+|||.+++..+.......
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 182 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE 182 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 986422 3357899999999999999998888665433
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=116.50 Aligned_cols=128 Identities=23% Similarity=0.205 Sum_probs=96.2
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++......+ .+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+...++++..+|+.... +.
T Consensus 59 ~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--- 130 (235)
T 3lcc_A 59 LVDTSSLPL-GRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PT--- 130 (235)
T ss_dssp HHHTTCSCC-EEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CS---
T ss_pred HHHhcCCCC-CCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CC---
Confidence 344445444 59999999999999988763 68999999999999999999876555556999999998533 33
Q ss_pred CCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEEecCCH----------HHHHHHHHHHhh-cCceeeE
Q 021550 180 GLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSPCI----------EQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 180 ~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~-~f~~~~~ 235 (311)
+.||+|++. .+ +...++.++.++|+|||.+++..... -...++.+.+.+ +|..++.
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 689999853 23 55678999999999999998753321 134566667766 6765543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=122.43 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=88.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++.++++++.+|+.+..++.
T Consensus 55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 129 (340)
T 2fyt_A 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV-- 129 (340)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC--
T ss_pred HHHhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC--
Confidence 3556667788999999999999999998887 457999999996 99999999999888667999999998655665
Q ss_pred CCCccEEEecC--------CChhhHHHHHHhcccCCcEEE
Q 021550 179 SGLADSIFLDL--------PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 179 ~~~~D~V~~d~--------~~~~~~l~~~~~~LkpgG~lv 210 (311)
++||+|+++. .....++..+.++|+|||.++
T Consensus 130 -~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 -EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 6899999765 123457888899999999987
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=117.98 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...+. .++++..+|+....++. +.||+|+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~---~~fD~v~ 151 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEP---DSYDVIW 151 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCS---SCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCC---CCEEEEE
Confidence 368899999999999999888773 56999999999999999998876542 34899999987655554 6899998
Q ss_pred ec-----CCChh--hHHHHHHhcccCCcEEEEecCCH--------------HHHHHHHHHHhh-cCceeeEE
Q 021550 187 LD-----LPQPW--LAIPSAKKMLKQDGILCSFSPCI--------------EQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 187 ~d-----~~~~~--~~l~~~~~~LkpgG~lv~~~~~~--------------~~~~~~~~~l~~-~f~~~~~~ 236 (311)
++ .+++. .++.++.++|+|||.+++..+.. ....++.+.+.+ +|..++..
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 65 33333 78999999999999999854321 135666677766 78766543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=116.90 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=95.4
Q ss_pred eeeecccHHHHHHhc--CCCCCCEEEEEcccccHHHHHHHHHhCC-----CcEEEEEeCCHHHHHHHHHHHHhcC-----
Q 021550 90 QILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAP-----TGHVYTFDFHEQRAASAREDFERTG----- 157 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~g----- 157 (311)
.+..|...+.+++.+ .+.++.+|||+|||+|.++..+++..+. .++|+++|+++++++.|++++...+
T Consensus 64 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 143 (227)
T 1r18_A 64 TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD 143 (227)
T ss_dssp EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccC
Confidence 344566666777777 5889999999999999999999987632 2699999999999999999988765
Q ss_pred CCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 158 ~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+ +++..+|+.. .++.. +.||+|+++.+.++ +++.+.+.|+|||.+++...
T Consensus 144 ~~~-v~~~~~d~~~-~~~~~--~~fD~I~~~~~~~~-~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 144 SGQ-LLIVEGDGRK-GYPPN--APYNAIHVGAAAPD-TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp HTS-EEEEESCGGG-CCGGG--CSEEEEEECSCBSS-CCHHHHHTEEEEEEEEEEES
T ss_pred CCc-eEEEECCccc-CCCcC--CCccEEEECCchHH-HHHHHHHHhcCCCEEEEEEe
Confidence 344 9999999974 44431 57999998766443 56889999999999987554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=115.31 Aligned_cols=123 Identities=19% Similarity=0.169 Sum_probs=96.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++. ...++++..+|+....++. ++||+|
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~---~~fD~v 120 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN---EQFEAI 120 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT---TCEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC---CCccEE
Confidence 357889999999999999999987 469999999999999998763 2234999999998766655 789999
Q ss_pred Ee-----cCCChhhHHHHHHhcccCCcEEEEecCCH---------------------HHHHHHHHHHhh-cCceeeEEEe
Q 021550 186 FL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI---------------------EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 186 ~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~---------------------~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
++ +.+++..++.++.++|+|||.+++..+.. -...++.+.+.+ +|..++....
T Consensus 121 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp EEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 85 45677889999999999999998864221 112355566666 7877765544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=115.40 Aligned_cols=115 Identities=22% Similarity=0.194 Sum_probs=93.3
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
+..+.....++..+.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+ ++++..+|+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~ 126 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGT 126 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGG
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcc
Confidence 4455666678888899999999999999999999999883 799999999999999999987665 4999999997
Q ss_pred CCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
. .++. .++||+|+++..-.. +...+.+.|+|||.+++..+.
T Consensus 127 ~-~~~~--~~~fD~v~~~~~~~~-~~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 127 L-GYEE--EKPYDRVVVWATAPT-LLCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp G-CCGG--GCCEEEEEESSBBSS-CCHHHHHTEEEEEEEEEEECS
T ss_pred c-cccc--CCCccEEEECCcHHH-HHHHHHHHcCCCcEEEEEEcC
Confidence 4 3332 168999997654322 446789999999999987653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=112.42 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=86.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...++ ++++..+|+....+ .
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~--- 182 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-Q--- 182 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-C---
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-c---
Confidence 445555558899999999999999999987 46999999999999999999998887 49999999986444 3
Q ss_pred CCccEEEecC-------CChhhHHHHHHhcccCCcEEEEe
Q 021550 180 GLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 180 ~~~D~V~~d~-------~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|+++. +....++.++.+.|+|||.+++.
T Consensus 183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7899999743 22347899999999999997765
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=124.08 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=88.7
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.....+.++.+|||+|||+|.++..+++. +..+|+++|++ ++++.|++++...++.++++++.+|+.+..++.
T Consensus 58 i~~~~~~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--- 131 (349)
T 3q7e_A 58 MFHNRHLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV--- 131 (349)
T ss_dssp HHTCHHHHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---
T ss_pred HHhccccCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC---
Confidence 333344568899999999999999999987 56799999999 599999999999999888999999998766665
Q ss_pred CCccEEEecC--------CChhhHHHHHHhcccCCcEEE
Q 021550 180 GLADSIFLDL--------PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~--------~~~~~~l~~~~~~LkpgG~lv 210 (311)
++||+|+++. .....++..+.++|+|||.++
T Consensus 132 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 132 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 7899999754 345567888899999999986
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=119.97 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=82.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---------------------------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--------------------------- 159 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--------------------------- 159 (311)
.++.+|||+|||+|.++..+++.+ +..+|+++|+++.+++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 368899999999999999999997 4679999999999999999986654322
Q ss_pred ------------------------------CcEEEEEecCCCCC-----CCCcCCCCccEEEecCC-----------Chh
Q 021550 160 ------------------------------SFVTVGVRDIQGQG-----FPDEFSGLADSIFLDLP-----------QPW 193 (311)
Q Consensus 160 ------------------------------~~v~~~~~D~~~~~-----~~~~~~~~~D~V~~d~~-----------~~~ 193 (311)
+++++..+|+.... +.. +.||+|++... ...
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~---~~fD~I~~~~vl~~ihl~~~~~~~~ 200 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT---PEYDVVLCLSLTKWVHLNWGDEGLK 200 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCC---CCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccC---CCcCEEEEChHHHHhhhcCCHHHHH
Confidence 46999999987432 233 78999986543 344
Q ss_pred hHHHHHHhcccCCcEEEEecCCH
Q 021550 194 LAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 194 ~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
.+++++.++|+|||.|++.....
T Consensus 201 ~~l~~~~~~LkpGG~lil~~~~~ 223 (292)
T 3g07_A 201 RMFRRIYRHLRPGGILVLEPQPW 223 (292)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCH
T ss_pred HHHHHHHHHhCCCcEEEEecCCc
Confidence 68999999999999999865443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=120.73 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++ . .++.+.++|+.+.++++ ++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~-~~v~~~~~~~e~~~~~~---~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------H-PRVTYAVAPAEDTGLPP---ASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------C-TTEEEEECCTTCCCCCS---SCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------c-CCceeehhhhhhhcccC---CcccEEEE
Confidence 4579999999999999999877 4799999999999987753 2 34999999998877877 89999985
Q ss_pred ----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 188 ----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 ----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+..++..++.++.++|||||.|+++.
T Consensus 106 ~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 106 AQAMHWFDLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence 34466789999999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-13 Score=121.37 Aligned_cols=136 Identities=16% Similarity=0.084 Sum_probs=103.6
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+.+..++.++..+ ..++.+|||+|||+|.++..++... +.++|+++|+++.+++.|++|+..+|+.+++++.++|+.+
T Consensus 202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ 279 (373)
T ss_dssp CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 4455555677777 8899999999999999999998873 4469999999999999999999999986669999999987
Q ss_pred CCCCCcCCCCccEEEecCCCh-------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEE
Q 021550 172 QGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~-------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e 237 (311)
..++. +.||+|++|+|-. ..+++.+.+.| +|.++++++..+.+.+ .+.+ +|...+...
T Consensus 280 ~~~~~---~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~---~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 280 LSQYV---DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEE---AIAENGFEIIHHRV 351 (373)
T ss_dssp GGGTC---SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHH---HHHHTTEEEEEEEE
T ss_pred CCccc---CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHH---HHHHcCCEEEEEEE
Confidence 55544 6899999998711 34567777777 6777767776665554 3333 565444333
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=121.19 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=99.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh---cCCCCcEEEEEecCCCCCC--CCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGVSSFVTVGVRDIQGQGF--PDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~g~~~~v~~~~~D~~~~~~--~~~~~~ 180 (311)
..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. .....+++++.+|+..... .. +
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~---~ 168 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPD---N 168 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCT---T
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccC---C
Confidence 3567899999999999999998763 467999999999999999998742 1223459999999864211 23 7
Q ss_pred CccEEEecCCCh---------hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh-cCceeeEEEee
Q 021550 181 LADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL-NFTDIRTFEIL 239 (311)
Q Consensus 181 ~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~-~f~~~~~~e~~ 239 (311)
+||+|++|.+.+ .++++.+.+.|+|||.+++...+. .....+.+.+++ +|..++.....
T Consensus 169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEee
Confidence 899999987644 368999999999999999865442 456777777877 69887766543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=111.08 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=92.7
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----- 173 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----- 173 (311)
++.... +.++.+|||+|||+|.++..+++.+++..+++++|+++ +++. . ++++..+|+....
T Consensus 13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~-~~~~~~~d~~~~~~~~~~ 80 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------V-GVDFLQGDFRDELVMKAL 80 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------T-TEEEEESCTTSHHHHHHH
T ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------C-cEEEEEcccccchhhhhh
Confidence 344444 67889999999999999999999976678999999998 6432 2 3899999987533
Q ss_pred ---CCCcCCCCccEEEecCCC-----h-----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceee
Q 021550 174 ---FPDEFSGLADSIFLDLPQ-----P-----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 174 ---~~~~~~~~~D~V~~d~~~-----~-----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
++. ++||+|+++.+. . ..++..+.++|+|||.+++..+.......+...++..|..++
T Consensus 81 ~~~~~~---~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
T 1ej0_A 81 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 157 (180)
T ss_dssp HHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE
T ss_pred hccCCC---CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhhEE
Confidence 444 689999987652 2 578999999999999999877766667777777766554443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=115.54 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=92.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-CCCCC-CcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFP-DEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~-~~~~~~~D 183 (311)
+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++ .. ++++..+|+. ..+++ + ++||
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~~~~~---~~fD 113 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----AP-HADVYEWNGKGELPAGLG---APFG 113 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CT-TSEEEECCSCSSCCTTCC---CCEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CC-CceEEEcchhhccCCcCC---CCEE
Confidence 367899999999999999999887 47999999999999999987 22 3899999995 34444 4 7899
Q ss_pred EEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEE
Q 021550 184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 184 ~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e 237 (311)
+|+++ .++..++.++.+.|+|||.++...... ....+.+.+.+ +|.......
T Consensus 114 ~v~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 114 LIVSR-RGPTSVILRLPELAAPDAHFLYVGPRL-NVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp EEEEE-SCCSGGGGGHHHHEEEEEEEEEEESSS-CCTHHHHHHHHTTCEEEEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCcEEEEeCCcC-CHHHHHHHHHHCCCeEEEEEe
Confidence 99987 567779999999999999998443322 23455666666 777655443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=113.12 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++ + +.+..+|+.... +. +.||+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~----~~~~~~d~~~~~-~~---~~fD~ 105 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL---G----RPVRTMLFHQLD-AI---DAYDA 105 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---T----SCCEECCGGGCC-CC---SCEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc---C----CceEEeeeccCC-CC---CcEEE
Confidence 3567899999999999999999887 469999999999999999886 2 567788887544 33 78999
Q ss_pred EEec-----CC--ChhhHHHHHHhcccCCcEEEEecCCHH--------------HHHHHHHHHhh-c-CceeeEEEee
Q 021550 185 IFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSPCIE--------------QVQRSCESLRL-N-FTDIRTFEIL 239 (311)
Q Consensus 185 V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~--------------~~~~~~~~l~~-~-f~~~~~~e~~ 239 (311)
|++. .+ +...++.++.++|+|||.+++..+... ...++.+.+++ + |..++..+..
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 106 VWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred EEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 9864 23 455789999999999999988644221 35666677776 8 9887766554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=118.80 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGF 174 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~v~~~~~D~~~~~~ 174 (311)
...++..+...++ +|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+.. .++++..+|+....+
T Consensus 72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 72 AREFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 3346666665444 9999999999999999887 478999999999999999998876531 349999999986544
Q ss_pred CCcCCCCccEEEec-----CCC---hhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 175 PDEFSGLADSIFLD-----LPQ---PWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 175 ~~~~~~~~D~V~~d-----~~~---~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
. +.||+|++. ... ...++.++.++|+|||.|++..+...
T Consensus 148 -~---~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 148 -D---KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp -S---CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred -C---CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 3 789988742 223 36789999999999999998655443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-13 Score=115.98 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++ ..+. .++.+..+|+....+++ ++||+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~-~~~~~~~~d~~~~~~~~---~~fD~ 107 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVD-RKVQVVQADARAIPLPD---ESVHG 107 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSC-TTEEEEESCTTSCCSCT---TCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccC-CceEEEEcccccCCCCC---CCeeE
Confidence 6788999999999999999999876 479999999999999999987 3233 34999999997655555 78999
Q ss_pred EEec-----CCChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLD-----LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|++. .+++..++.++.++|+|||.+++.
T Consensus 108 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 108 VIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 9864 347788999999999999999875
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=113.15 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=93.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++. . ++.+..+|+....++. +.||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~~~---~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH-----P-SVTFHHGTITDLSDSP---KRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC-----T-TSEEECCCGGGGGGSC---CCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC-----C-CCeEEeCcccccccCC---CCeEEEEeh
Confidence 789999999999999999887 469999999999999999862 2 3889999998655555 789999863
Q ss_pred -----CC--ChhhHHHHHHhcccCCcEEEEecCCHH---------------HHHHHHHHHhh-cCceeeEEEee
Q 021550 189 -----LP--QPWLAIPSAKKMLKQDGILCSFSPCIE---------------QVQRSCESLRL-NFTDIRTFEIL 239 (311)
Q Consensus 189 -----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~---------------~~~~~~~~l~~-~f~~~~~~e~~ 239 (311)
.+ ++..+++++.++|+|||.+++..+... ...++.+.+++ +|..++....-
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 23 667899999999999999988643321 25667777776 78766655443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-14 Score=125.08 Aligned_cols=114 Identities=16% Similarity=0.052 Sum_probs=84.2
Q ss_pred hcCCCCCCEEEEEcccc------cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE-EEecCCCCCCC
Q 021550 103 YLELVPGCLVLESGTGS------GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV-GVRDIQGQGFP 175 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~------G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~-~~~D~~~~~~~ 175 (311)
.+.+.++.+|||+|||+ |. ..+++.+++.++|+++|+++. +. ++++ +++|+.+..++
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~~~ 121 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVHTA 121 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCCCS
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCCcc
Confidence 34678999999999944 66 555667655789999999997 12 2778 99999864433
Q ss_pred CcCCCCccEEEecCCChh----------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEE
Q 021550 176 DEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~----------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~ 236 (311)
+.||+|++|+..++ .+++.+.++|+|||.|++.........++.+.++. +|..++..
T Consensus 122 ----~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 122 ----NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp ----SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred ----CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE
Confidence 67999999764321 57899999999999999865544445577777777 47665544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-14 Score=120.01 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
..++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++....+ .++.+..+|+.+. ++++ ++||
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~---~~fD 130 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD---GHFD 130 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT---TCEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC---CceE
Confidence 567899999999999999998664 23589999999999999999887665 3499999998754 5665 7899
Q ss_pred EEEec-----CCChh-----hHHHHHHhcccCCcEEEEec
Q 021550 184 SIFLD-----LPQPW-----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d-----~~~~~-----~~l~~~~~~LkpgG~lv~~~ 213 (311)
+|++| .+... .++.++.++|||||.|++..
T Consensus 131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 99882 22221 45899999999999998753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=117.38 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=99.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCCC-CCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ-GFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~~-~~~~~~~~~~D 183 (311)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++... ++ .++++++.+|+... .... +.||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~---~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE---NQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCC---SCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC---CCee
Confidence 46899999999999999998763 4689999999999999999987542 23 34699999998641 1122 6899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEe
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
+|++|++++ .++++.+.+.|+|||.+++...+ .+....+.+.+++.|..+..+..
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~ 218 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTA 218 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEE
Confidence 999998764 46899999999999999987533 45567777777777887766553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=114.35 Aligned_cols=104 Identities=22% Similarity=0.207 Sum_probs=85.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++. .++++..+|+....++
T Consensus 36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~--- 104 (220)
T 3hnr_A 36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP--- 104 (220)
T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC---
T ss_pred HHHHHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC---
Confidence 4566666678999999999999999999887 5799999999999999998754 3488999999764433
Q ss_pred CCCccEEEec-----CCChhh--HHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLD-----LPQPWL--AIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d-----~~~~~~--~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++. .+++.. ++.++.++|+|||.+++..+
T Consensus 105 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 105 -TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp -SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred -CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 689999864 344544 89999999999999998744
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=122.44 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=89.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+.......++.+|||+|||+|.++..++++ +..+|+++|++ .+++.|++++..+++.++++++.+|+.+..++
T Consensus 54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--- 127 (376)
T 3r0q_C 54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP--- 127 (376)
T ss_dssp HHHTTTTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---
T ss_pred HHHhccccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---
Confidence 3555567788999999999999999999987 35699999999 99999999999999988899999999865444
Q ss_pred CCCccEEEecC--------CChhhHHHHHHhcccCCcEEEE
Q 021550 179 SGLADSIFLDL--------PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 179 ~~~~D~V~~d~--------~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++||+|+++. .....++..+.+.|+|||.+++
T Consensus 128 -~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 128 -EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp -SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred -CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 6899999754 2345678888999999999875
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=120.56 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=101.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++..+++. +++..+|+.+...+. +.||+|
T Consensus 231 ~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~~---~~fD~I 302 (381)
T 3dmg_A 231 GVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTEE---ARFDII 302 (381)
T ss_dssp TTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCTT---CCEEEE
T ss_pred CCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccccC---CCeEEE
Confidence 347889999999999999999987 469999999999999999999988765 889999998644443 689999
Q ss_pred EecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEeeee
Q 021550 186 FLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 186 ~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~~~~ 249 (311)
++++|-. +.++..+.+.|+|||.+++......... ..+.+.|.+.+.+ ....|.+....
T Consensus 303 i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~---~~l~~~f~~v~~l--~~~gF~Vl~a~ 371 (381)
T 3dmg_A 303 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYE---PLLEEKFGAFQTL--KVAEYKVLFAE 371 (381)
T ss_dssp EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHH---HHHHHHHSCCEEE--EESSSEEEEEE
T ss_pred EECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChH---HHHHHhhccEEEE--eCCCEEEEEEE
Confidence 9986633 3688999999999999998765443332 3333345566655 34667776543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-12 Score=116.33 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=92.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++...+..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+. ..++
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p--- 266 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP--- 266 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC---
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC---
Confidence 46666777888999999999999999999985 6789999999 9999999999998888777999999997 4555
Q ss_pred CCCccEEEe-----cCCChh--hHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~~ 213 (311)
..||+|++ +.+++. .+++++.+.|+|||++++..
T Consensus 267 -~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 267 -DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp -SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred -CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 36999985 445443 68999999999999999853
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=115.02 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=87.6
Q ss_pred HHHHhcCC--CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL--VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~--~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.+...+.. .++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+. ++.+..+|+....++
T Consensus 26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~- 99 (246)
T 1y8c_A 26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN- 99 (246)
T ss_dssp HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-
Confidence 34444433 37889999999999999998887 46899999999999999999887665 388999998764433
Q ss_pred cCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 177 EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 177 ~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+.||+|++.. .++..++.++.++|+|||.+++-.+...
T Consensus 100 ---~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 100 ---RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp ---CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred ---CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 6799999754 2345789999999999999998655543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=118.27 Aligned_cols=114 Identities=13% Similarity=0.027 Sum_probs=85.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
|.....+..++...++.+|||+|||+|..+..+++. +++.++|+++|+++++++.|+. ...+++++.+|+.
T Consensus 67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~ 140 (236)
T 2bm8_A 67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCS 140 (236)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcch
Confidence 555555555565556789999999999999999987 4678999999999999888761 2245999999997
Q ss_pred CCC-CCCcCCCCccEEEecCC--ChhhHHHHHHh-cccCCcEEEEec
Q 021550 171 GQG-FPDEFSGLADSIFLDLP--QPWLAIPSAKK-MLKQDGILCSFS 213 (311)
Q Consensus 171 ~~~-~~~~~~~~~D~V~~d~~--~~~~~l~~~~~-~LkpgG~lv~~~ 213 (311)
... ++.....+||+|+++.. +...++.++.+ .|+|||++++..
T Consensus 141 ~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 141 DLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp CSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred hHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 420 12111137999997654 34567888886 999999999753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=117.16 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=80.0
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh----------cC------CCCcEE
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----------TG------VSSFVT 163 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~----------~g------~~~~v~ 163 (311)
+...+.+.++.+|||+|||+|..+..|++. +.+|+++|+|+.+++.|+++... .+ ...+++
T Consensus 60 ~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 136 (252)
T 2gb4_A 60 LDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSIS 136 (252)
T ss_dssp HHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceE
Confidence 333344568899999999999999999987 46999999999999999876431 00 123499
Q ss_pred EEEecCCCCCCCCcCCCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.++|+....... .++||+|+.. ++ ....++.++.++|+|||++++
T Consensus 137 ~~~~D~~~l~~~~--~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 137 LYCCSIFDLPRAN--IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp EEESCTTTGGGGC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEECccccCCccc--CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999997643321 1689999842 22 234689999999999999864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=117.08 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=92.6
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+++.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++++...++.+++++..+|+.+ .++
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-- 246 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-- 246 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS--
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC--
Confidence 346677778889999999999999999999985 6789999999 99999999999988887679999999973 455
Q ss_pred CCCCccEEEe-----cCCChh--hHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..||+|++ +.+++. .++.++.+.|+|||++++...
T Consensus 247 --~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 --VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 34999986 344443 789999999999999988655
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=117.82 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=96.6
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V~~ 187 (311)
.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++.... ..+++++.+|+... .++. ++||+||+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~---~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTP---ASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCT---TCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccC---CCCCEEEE
Confidence 499999999999999999975 56799999999999999999875432 34599999998741 2333 68999999
Q ss_pred cCCCh---------hhHHHHHHhcccCCcEEEEecC---CHHHHHHHHHHHhhcCceeeEEE
Q 021550 188 DLPQP---------WLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRLNFTDIRTFE 237 (311)
Q Consensus 188 d~~~~---------~~~l~~~~~~LkpgG~lv~~~~---~~~~~~~~~~~l~~~f~~~~~~e 237 (311)
|...+ .++++.+.+.|+|||.+++... ....+..+...|++.|..+..+.
T Consensus 166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~ 227 (317)
T 3gjy_A 166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIA 227 (317)
T ss_dssp CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEE
Confidence 86533 4689999999999999988643 22345667777777788776664
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=118.06 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=93.5
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---CcEEEEEecCCCCC-
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQG- 173 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~D~~~~~- 173 (311)
..+...+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++....+.. .++.+..+|+....
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 34666666678899999999999999999887 459999999999999999887443321 23778888887533
Q ss_pred --CCCcCCCCccEEEec------CCC-------hhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 174 --FPDEFSGLADSIFLD------LPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 174 --~~~~~~~~~D~V~~d------~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
++. ++||+|++. .++ ...+++++.++|+|||.+++..+..+.+.+
T Consensus 124 ~~~~~---~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 183 (293)
T 3thr_A 124 DVPAG---DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS 183 (293)
T ss_dssp HSCCT---TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred ccccC---CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence 455 789999863 345 678999999999999999998887665544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=116.48 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHHHhcCC--CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL--VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~--~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.++..++. .++.+|||+|||+|.++..+++.. |..+++++|++ .+++.|++++...++.+++++..+|+.+..++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 230 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG- 230 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC-
Confidence 45666676 788999999999999999999986 67899999999 99999999998888877799999999754454
Q ss_pred cCCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..||+|++ +.+++ ..+++++.+.|+|||.+++..+
T Consensus 231 ---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 231 ---NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp ---SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ---CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 34999986 23222 4789999999999999988644
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=116.33 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=89.6
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
..++..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+. ..++ ..
T Consensus 163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p----~~ 235 (332)
T 3i53_A 163 AKYDWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP----AG 235 (332)
T ss_dssp GSSCCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC----CS
T ss_pred HhCCCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC----CC
Confidence 44455667899999999999999999986 6789999999 9999999999998888777999999997 4554 37
Q ss_pred ccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||+|++ +.+++ ..+++++.+.|+|||++++..+
T Consensus 236 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 999985 45554 6789999999999999998644
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=109.59 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----------
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----------- 173 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----------- 173 (311)
+.++.+|||+|||+|.++..+++.+++ .++|+++|+++.. ... ++++.++|+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~-~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIP-NVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCT-TCEEEECCTTTTSSCCC-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCC-CceEEEccccchhhhhhccccccc
Confidence 578899999999999999999998742 6899999999831 123 3889999987543
Q ss_pred --------------CCCcCCCCccEEEecCCChh----------------hHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 174 --------------FPDEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 174 --------------~~~~~~~~~D~V~~d~~~~~----------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
++. +.||+|+++....+ .++..+.++|+|||.+++..........+.
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~ 164 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQD---KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLK 164 (201)
T ss_dssp ----CHHHHHHHHHHTT---CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHH
T ss_pred cccchhhHHHHHhhcCC---CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHH
Confidence 233 68999998754221 267889999999999987554444556666
Q ss_pred HHHhhcCcee
Q 021550 224 ESLRLNFTDI 233 (311)
Q Consensus 224 ~~l~~~f~~~ 233 (311)
..++..|..+
T Consensus 165 ~~l~~~f~~v 174 (201)
T 2plw_A 165 TYLKGMFQLV 174 (201)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHHHHheE
Confidence 6665555433
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-12 Score=117.03 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+| |+|.++..++.. ++..+|+++|+++.+++.|++++...|+. +++++.+|+.. .++....+.||+|
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~-~l~~~~~~~fD~V 245 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRK-PLPDYALHKFDTF 245 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTS-CCCTTTSSCBSEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhh-hchhhccCCccEE
Confidence 34689999999 999999999876 45589999999999999999999998887 49999999975 3332112589999
Q ss_pred EecCCChh----hHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLPQPW----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~~~~----~~l~~~~~~LkpgG~lv~~~ 213 (311)
++|+|... .++..+.+.|+|||.+++++
T Consensus 246 i~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 246 ITDPPETLEAIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred EECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence 99987533 67889999999999543343
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=111.00 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH-EQRAASA---REDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~-~~~~~~a---~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.++.+|||+|||+|.++..+++. .+..+|+++|+| +.+++.| ++++...++.+ +.+..+|+... +....+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l--~~~~~d~v 98 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESL--PFELKNIA 98 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBC--CGGGTTCE
T ss_pred CCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHh--hhhccCeE
Confidence 67889999999999999999876 367899999999 6666666 77777777766 99999999753 33212567
Q ss_pred cEEEecCCCh----------hhHHHHHHhcccCCcEEEE
Q 021550 183 DSIFLDLPQP----------WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 183 D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~ 211 (311)
|.|+++.+.+ ..++.++.++|||||.+++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 7777766533 3578999999999999988
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=120.97 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=91.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~ 176 (311)
.+...+++.++.+|||+|||+|..+.++++.+ +.++|+++|+++.+++.+++++...++. +.+..+|+.... ++.
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTT
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhccc
Confidence 46678889999999999999999999999986 3589999999999999999999988874 788899987532 333
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||.|++|+|+. ..++..+.+.|+|||.+++.
T Consensus 314 ---~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 314 ---QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp ---CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6799999988742 25789999999999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=118.64 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=87.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|++++..+++.++++++.+|+.+..++.
T Consensus 30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 103 (328)
T 1g6q_1 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--- 103 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---
T ss_pred HHhhHhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC---
Confidence 444555668899999999999999998886 45799999999 699999999999998878999999998655554
Q ss_pred CCccEEEecCC--------ChhhHHHHHHhcccCCcEEE
Q 021550 180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~~--------~~~~~l~~~~~~LkpgG~lv 210 (311)
++||+|+++.. ....++..+.++|+|||.++
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 68999997643 23467788889999999987
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=117.05 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=88.6
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+.....++..+...++.+|||+|||+|.++..+++ +..+|+++|+++.+++.|+++. ++++..+|+...+
T Consensus 20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~ 89 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLA 89 (261)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCC
Confidence 34455677888888999999999999999999987 3689999999999998776532 4999999998766
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+++ ++||+|++ +.+++..++.++.+.|+ ||.+++..+
T Consensus 90 ~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 90 LPD---KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp SCT---TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCC---CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 665 78999985 45678889999999999 998877544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=108.61 Aligned_cols=122 Identities=17% Similarity=0.102 Sum_probs=93.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+ +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++. + +.+...|+....++.
T Consensus 39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~-----~-~~~~~~d~~~~~~~~--- 105 (195)
T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP-----E-ARWVVGDLSVDQISE--- 105 (195)
T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT-----T-SEEEECCTTTSCCCC---
T ss_pred HHHHh-ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC-----C-CcEEEcccccCCCCC---
Confidence 33333 568899999999999999999887 4799999999999999998742 3 788999998655554
Q ss_pred CCccEEEecCC--------ChhhHHHHHHhcccCCcEEEEecCCHH--HHHHHHHHHhh-cCceee
Q 021550 180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIE--QVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 180 ~~~D~V~~d~~--------~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~-~f~~~~ 234 (311)
+.||+|+++.+ ....++..+.+.|+|||.+++..+... ...++...+.+ +|...+
T Consensus 106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence 78999998632 225689999999999999988654432 34556666665 676444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=120.04 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
..+|.+|||+|||+|.+++.++.. ++.|+++|+|+.+++.|++|+..+++.+ .+..+|+.+. .+. +.||
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~----~~fD 282 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE----GPFH 282 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC----CCEE
T ss_pred hcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc----CCCC
Confidence 346999999999999999999986 3459999999999999999999999874 4558888641 122 4499
Q ss_pred EEEecCCC--------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 184 SIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 184 ~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|++|+|. ...++..+.+.|+|||.|++++.
T Consensus 283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999885 13678899999999999985533
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=120.93 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
....+|++|||+|||+|.+++.+|++ ++.+|+++|.++ +++.|+++++.+++.++|+++.+|+.+..++ +++|
T Consensus 79 ~~~~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp----e~~D 151 (376)
T 4hc4_A 79 WAALRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP----EQVD 151 (376)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS----SCEE
T ss_pred HHhcCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC----cccc
Confidence 34457899999999999999887776 467999999986 8899999999999999999999999875555 5799
Q ss_pred EEEecCC--------ChhhHHHHHHhcccCCcEEE
Q 021550 184 SIFLDLP--------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 184 ~V~~d~~--------~~~~~l~~~~~~LkpgG~lv 210 (311)
+|++.+- ....++....++|+|||.++
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 9987432 23456667779999999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=120.28 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=87.1
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~~~ 177 (311)
+...+. ..++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ +++++.+|+.+. ++..
T Consensus 144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~-l~~~ 219 (332)
T 2igt_A 144 LKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF-IQRE 219 (332)
T ss_dssp HHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH-HHHH
T ss_pred HHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH-HHHH
Confidence 444443 456789999999999999999885 3499999999999999999999998875 499999998641 1100
Q ss_pred --CCCCccEEEecCCC---------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 178 --FSGLADSIFLDLPQ---------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 --~~~~~D~V~~d~~~---------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.||+|++|+|. ...++..+.++|+|||.+++...
T Consensus 220 ~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 220 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 01579999999883 23678889999999999766443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-13 Score=119.34 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=98.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++... ++ ..++++..+|+... .... +.|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~f 190 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT---NTY 190 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC---SCE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcC---CCc
Confidence 456899999999999999998763 4689999999999999999987652 22 34599999998641 1122 689
Q ss_pred cEEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEe
Q 021550 183 DSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
|+|++|.+++ .++++.+.+.|+|||.+++...+ .+.+..+.+.+++.|..++.+..
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~ 259 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANI 259 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 9999987543 46789999999999999986432 34566777777777877766554
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=116.51 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=95.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--cCC-CCcEEEEEecCCC-CCCCCcCCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGV-SSFVTVGVRDIQG-QGFPDEFSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~g~-~~~v~~~~~D~~~-~~~~~~~~~~ 181 (311)
..++.+|||+|||+|.++..++++. +..+|+++|+++.+++.|++++.. .++ ..+++++.+|+.. ..... +.
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~---~~ 168 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQ---DA 168 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCS---SC
T ss_pred CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCC---CC
Confidence 3466899999999999999998763 568999999999999999998765 233 3459999999864 11123 68
Q ss_pred ccEEEecCCCh---------hhHHHHHHhcccCCcEEEEec--CC--HHHHHHHHHHHhhcCceeeEE
Q 021550 182 ADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 182 ~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~--~~--~~~~~~~~~~l~~~f~~~~~~ 236 (311)
||+|++|.+.+ .++++.+.+.|+|||.+++.. +. ......+.+.+++-|...+..
T Consensus 169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~ 236 (304)
T 2o07_A 169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYA 236 (304)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEE
T ss_pred ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeE
Confidence 99999988764 357999999999999999864 22 233455555666567766544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=117.00 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=88.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|+++++.+++.++++++.+|+.+..++
T Consensus 41 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--- 114 (348)
T 2y1w_A 41 AILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP--- 114 (348)
T ss_dssp HHHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---
T ss_pred HHHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC---
Confidence 3666777788999999999999999998886 467999999996 8899999999888876799999999864443
Q ss_pred CCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEE
Q 021550 179 SGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 179 ~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++||+|+++.. .....+..+.+.|+|||.+++
T Consensus 115 -~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 115 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp -SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred -CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 57999998643 234678888999999999974
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=111.87 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=86.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++......++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...+. ++.+..+|+....++
T Consensus 33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~---- 103 (252)
T 1wzn_A 33 IFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK---- 103 (252)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC----
T ss_pred HHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC----
Confidence 444555677899999999999999999886 47999999999999999999887765 389999999864433
Q ss_pred CCccEEEecCC--------ChhhHHHHHHhcccCCcEEEEecCC
Q 021550 180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 180 ~~~D~V~~d~~--------~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++... +...++..+.+.|+|||.+++-.++
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 57999985321 3356889999999999999875554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=117.75 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC--------CCcEEEEEecCCCCCCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV--------SSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~--------~~~v~~~~~D~~~~~~~~ 176 (311)
.++.+|||+|||+|.++..++++ +..+|+++|+++.+++.|++++ .. ++ ..+++++.+|+.. .++.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~-~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE-FIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH-HHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH-Hhcc
Confidence 45689999999999999999887 5689999999999999999987 43 22 3469999999863 1111
Q ss_pred cCCCCccEEEecCCCh---------hhHHHHHHhcccCCcEEEEecC----CHHHHHHHHHHHhhcCceeeEEEe
Q 021550 177 EFSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
.+.||+|++|.+++ .++++.+.+.|+|||.+++... ..+....+.+.++..|.....+..
T Consensus 150 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~ 222 (281)
T 1mjf_A 150 --NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSF 222 (281)
T ss_dssp --CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred --cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEE
Confidence 16899999988753 4679999999999999998642 234556666666666776665544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=114.28 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=82.3
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+.....++..+++.++.+|||+|||+|.++..++++ ..+|+++|+|+.|++.|++++... .+.....++. ..
T Consensus 31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~-~~ 102 (261)
T 3iv6_A 31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDIT-AE 102 (261)
T ss_dssp CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTT-SC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecc-cc
Confidence 455566888899999999999999999999999987 479999999999999999986543 1333333322 10
Q ss_pred CCCcCCCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
......+.||+|+++.. +...++..+.++| |||.+++..
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 11111268999997542 2235889999999 999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=108.09 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=82.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V 185 (311)
++.+|||+|||+|.++..+++. ...|+++|+++.+++.|++++...+. ++++..+|+.+. .++. ..++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~-~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKA-QGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHH-TTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhc-cCCceEEE
Confidence 7889999999999999999887 23499999999999999999998887 489999998641 1111 01379999
Q ss_pred EecCC---ChhhHHHHHH--hcccCCcEEEEecCCHH
Q 021550 186 FLDLP---QPWLAIPSAK--KMLKQDGILCSFSPCIE 217 (311)
Q Consensus 186 ~~d~~---~~~~~l~~~~--~~LkpgG~lv~~~~~~~ 217 (311)
+++++ .....++.+. ++|+|||.+++..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred EECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 99864 3456777777 99999999998665443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=107.75 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=67.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~~~~~~~~D~ 184 (311)
++.+|||+|||+|.++..++... +..+|+++|+++.+++.|++++...++.++++++.+|+.+. .++....+.||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 57899999999999999998875 45899999999999999999999988877799999997631 233100147999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
|++++|
T Consensus 144 i~~npp 149 (254)
T 2h00_A 144 CMCNPP 149 (254)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999865
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=112.76 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++ +++..+|+.+. ++++ ++||
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~---~~fD 103 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPD---KYLD 103 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCT---TCBS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCC---CCee
Confidence 567899999999999999999887 46899999999999998864 66777887642 5565 7899
Q ss_pred EEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecCCH
Q 021550 184 SIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 184 ~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+|++ +.+.+ ..++.++.++|+|||.+++..+..
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9986 34543 689999999999999999876544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=109.53 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++... . .++.+..+|+....++. ++||+|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~---~~fD~v 111 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLG-G-FPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPS---ASFDVV 111 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHT-T-CCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCS---SCEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCC---CcccEE
Confidence 367899999999999999999887 2 24899999999999999988653 2 34899999998655555 789999
Q ss_pred EecCC--------------------ChhhHHHHHHhcccCCcEEEEecCCHHHH
Q 021550 186 FLDLP--------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 186 ~~d~~--------------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
+++.+ +...++.++.++|+|||.+++..+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~ 165 (215)
T 2pxx_A 112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF 165 (215)
T ss_dssp EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH
T ss_pred EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH
Confidence 86322 23578999999999999999988776443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-13 Score=116.29 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C------------------------
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V------------------------ 158 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~------------------------ 158 (311)
...++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|++++.... .
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 5568899999999999887665544 23579999999999999998875431 0
Q ss_pred --CCcEE-EEEecCCC-CCCCCcCCCCccEEEecC------C---ChhhHHHHHHhcccCCcEEEEecCCHH--------
Q 021550 159 --SSFVT-VGVRDIQG-QGFPDEFSGLADSIFLDL------P---QPWLAIPSAKKMLKQDGILCSFSPCIE-------- 217 (311)
Q Consensus 159 --~~~v~-~~~~D~~~-~~~~~~~~~~~D~V~~d~------~---~~~~~l~~~~~~LkpgG~lv~~~~~~~-------- 217 (311)
...+. +..+|+.. .+++....++||+|++.. + +...++.++.++|||||.|++......
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~ 209 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 209 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCe
Confidence 01133 88899875 233211126899998632 2 334789999999999999988632110
Q ss_pred -------HHHHHHHHHhh-cCceeeEEE
Q 021550 218 -------QVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 218 -------~~~~~~~~l~~-~f~~~~~~e 237 (311)
...++.+.|.+ +|..++..+
T Consensus 210 ~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 210 EFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 24466677766 776555443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-13 Score=114.57 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=83.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCc--------------
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT---GVSSF-------------- 161 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~---g~~~~-------------- 161 (311)
++..+...++.+|||+|||+|.++..+++.+ .+..+|+++|+++.+++.|++++... ++.+.
T Consensus 43 ~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1o9g_A 43 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 122 (250)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence 3444444467899999999999999999872 24579999999999999999988765 43222
Q ss_pred -----------EE-------------EEEecCCCCCCC-----CcCCCCccEEEecCC----Ch----------hhHHHH
Q 021550 162 -----------VT-------------VGVRDIQGQGFP-----DEFSGLADSIFLDLP----QP----------WLAIPS 198 (311)
Q Consensus 162 -----------v~-------------~~~~D~~~~~~~-----~~~~~~~D~V~~d~~----~~----------~~~l~~ 198 (311)
++ +..+|+.. .++ . ...||+|++++| .. ..++.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~--~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~ 199 (250)
T 1o9g_A 123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFD-PRALSAVLA--GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS 199 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC-GGGHHHHHT--TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhccccccccccceeeccccc-ccccccccC--CCCceEEEeCCCeeccccccccccccHHHHHHHH
Confidence 55 88999874 331 2 148999998865 11 268899
Q ss_pred HHhcccCCcEEEEe
Q 021550 199 AKKMLKQDGILCSF 212 (311)
Q Consensus 199 ~~~~LkpgG~lv~~ 212 (311)
+.++|+|||++++.
T Consensus 200 ~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 200 LASALPAHAVIAVT 213 (250)
T ss_dssp HHHHSCTTCEEEEE
T ss_pred HHHhcCCCcEEEEe
Confidence 99999999999974
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=116.65 Aligned_cols=113 Identities=21% Similarity=0.231 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+.. +.+..+|+.. +..
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~--~~~ 259 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFS--EVK 259 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTT--TCC
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccc--ccc
Confidence 3457777777778899999999999999999883 5679999999999999999999887765 5678888864 233
Q ss_pred cCCCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 177 EFSGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
++||+|+++++- ...++.++.+.|+|||.+++..+...
T Consensus 260 ---~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 260 ---GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp ---SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred ---CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 789999998763 24689999999999999998765443
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=109.35 Aligned_cols=89 Identities=24% Similarity=0.198 Sum_probs=73.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..++.. +++|+++.+++.++++ .+.+..+|+....++. +.||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~---~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKD---ESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCT---TCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCC---CCeeEEEE
Confidence 3889999999999998766432 9999999999999875 2788899987655554 68999986
Q ss_pred c-----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 188 D-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 188 d-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. .+++..++.++.++|+|||.+++..+
T Consensus 109 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 140 (219)
T 1vlm_A 109 VTTICFVDDPERALKEAYRILKKGGYLIVGIV 140 (219)
T ss_dssp ESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 56778899999999999999988644
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=117.81 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=95.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++... ++ ..+++++.+|+... .... +.|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~---~~f 182 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK---NEF 182 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT---TCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcC---CCc
Confidence 356899999999999999998863 5689999999999999999987653 33 34699999998641 1122 689
Q ss_pred cEEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEe
Q 021550 183 DSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
|+|++|.+++ .++++.+.+.|+|||.+++...+ .+....+.+.+++.|.+.+.+..
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~ 251 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS 251 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEE
Confidence 9999988643 46889999999999999986422 24455666666666777665544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=108.59 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..++.. ++.+|+++|+++.+++.|++++...+. ++.+..+|+...+++. +.||+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~fD~ 92 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKD---ESMSF 92 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCT---TCEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCC---CceeE
Confidence 3467899999999999986555554 357999999999999999999877663 3888999998655555 78999
Q ss_pred EEecC-------CChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDL-------PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~-------~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++.. .++..++.++.++|+|||.+++...
T Consensus 93 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 93 VYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98632 2456789999999999999987543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-13 Score=109.89 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=92.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.+..+|||+|||+|.+++.++... |..+|+++|+++.+++.+++++...|..+++.+ .|.... .+. +.||+|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~---~~~DvVL 120 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYK---GTYDVVF 120 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTT---SEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCC---CCcChhh
Confidence 567899999999999999988774 677999999999999999999999998755666 666532 344 7899998
Q ss_pred ec-----CCChhhHHHHHHhcccCCcEEEEecC----------CHHHHHHHHHHHhhcCceeeEEEee
Q 021550 187 LD-----LPQPWLAIPSAKKMLKQDGILCSFSP----------CIEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 187 ~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~----------~~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+. +.+....+..+.+.|+|||.++.+-. .......+.+.+.+.+..++.++.-
T Consensus 121 a~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 121 LLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG 188 (200)
T ss_dssp EETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET
T ss_pred HhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC
Confidence 52 23444567799999999999998741 1123334444444455555555543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-12 Score=113.12 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecCCCC-CCCCcCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQ-GFPDEFSG 180 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~~~~-~~~~~~~~ 180 (311)
...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+ . ..+++++.+|+... .... +
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~ 150 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVT---N 150 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCC---S
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCC---C
Confidence 34466899999999999999998763 56899999999999999999876432 1 34599999998641 1112 6
Q ss_pred CccEEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEee
Q 021550 181 LADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 181 ~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
.||+|++|.+++ .++++.+.+.|+|||.+++...+ .+....+.+.+++.|...+.+...
T Consensus 151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~ 222 (283)
T 2i7c_A 151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANIS 222 (283)
T ss_dssp CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEE
Confidence 899999987643 36889999999999999987542 244566667777678777665543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=112.80 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=92.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++++...++.+++++..+|+.+ .++
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--- 247 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP--- 247 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC---
Confidence 46677778889999999999999999999985 6789999999 99999999999988887679999999973 455
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..||+|++ +.+++ ..+++++.+.|+|||.+++..+.
T Consensus 248 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 248 -RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 34999986 34444 36899999999999999987554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=118.84 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...++..+++++.+|+.... +. +.||+|
T Consensus 76 ~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~D~v 148 (241)
T 3gdh_A 76 SFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SF---LKADVV 148 (241)
T ss_dssp HSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GG---CCCSEE
T ss_pred ccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-cc---CCCCEE
Confidence 347899999999999999999986 48999999999999999999999888556999999997532 33 689999
Q ss_pred EecCCCh-----hhHHHHHHhcccCCcEEE
Q 021550 186 FLDLPQP-----WLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~~~-----~~~l~~~~~~LkpgG~lv 210 (311)
+++++-. ...+..+.++|+|||.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 149 FLSPPWGGPDYATAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp EECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred EECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence 9987632 225566889999999865
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=113.19 Aligned_cols=109 Identities=15% Similarity=0.247 Sum_probs=92.0
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..++..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+.+..++.
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~- 256 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE- 256 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-
Confidence 356777788889999999999999999999985 6789999999 9999999999998888777999999998644432
Q ss_pred CCCCccEEEe-----cCCC--hhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFL-----DLPQ--PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~--~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+|+|++ +.++ ...+++++.+.|+|||.+++..
T Consensus 257 ----~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 257 ----ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp ----CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred ----CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 499985 3444 4678999999999999998764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=109.76 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFP 175 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~ 175 (311)
.++..+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++ ..+.+...|+... .+.
T Consensus 43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~ 112 (227)
T 3e8s_A 43 AILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVP 112 (227)
T ss_dssp HHHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSC
T ss_pred HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccc
Confidence 3556666667899999999999999999887 46999999999999999876 1266777776542 223
Q ss_pred CcCCCCccEEEec----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. ..+||+|++. .+++..++.++.++|+|||.+++..+
T Consensus 113 ~--~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 113 V--GKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp C--CCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred c--CCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 2 1469999864 45777899999999999999998654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=117.69 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=102.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~ 176 (311)
.+++.+... +.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ +++..+|+.+. .+..
T Consensus 205 ~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~~~~~d~~~~~~~~~~ 279 (369)
T 3bt7_A 205 WALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQAMNG 279 (369)
T ss_dssp HHHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCS-EEEECCCSHHHHHHHSS
T ss_pred HHHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHHHHHhh
Confidence 455666554 578999999999999998875 4799999999999999999999999865 99999998641 1111
Q ss_pred c-----------CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceee
Q 021550 177 E-----------FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTY 243 (311)
Q Consensus 177 ~-----------~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~ 243 (311)
. ....||+|++|+|.. .+...+.+.|+++|.++.++-....+.+-...|..+ ...+..++.+...+
T Consensus 280 ~~~~~~l~~~~~~~~~fD~Vv~dPPr~-g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~~y~~~~~~~~D~FP~T~ 358 (369)
T 3bt7_A 280 VREFNRLQGIDLKSYQCETIFVDPPRS-GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTH 358 (369)
T ss_dssp CCCCTTGGGSCGGGCCEEEEEECCCTT-CCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHEEEEEEEEECCSTTSS
T ss_pred ccccccccccccccCCCCEEEECcCcc-ccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhhCcEEEEEEeeccCCCCC
Confidence 0 002799999998854 345667777889999887666655556555555543 44455555555555
Q ss_pred EEe
Q 021550 244 EIR 246 (311)
Q Consensus 244 ~v~ 246 (311)
|++
T Consensus 359 HvE 361 (369)
T 3bt7_A 359 HMQ 361 (369)
T ss_dssp CCE
T ss_pred cEE
Confidence 554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-11 Score=100.21 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...++ ++++..+|+.. ++ +.||+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~--~~----~~~D~ 115 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--FN----SRVDI 115 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--CC----CCCSE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHH--cC----CCCCE
Confidence 4667899999999999999999886 346899999999999999999988877 39999999975 33 57999
Q ss_pred EEecCCC-------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 185 IFLDLPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 185 V~~d~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
|++|+|- ...++..+.+.+ |+.+++..+.......+.+.+.+ +|.
T Consensus 116 v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 116 VIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFV 168 (207)
T ss_dssp EEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEE
T ss_pred EEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCe
Confidence 9999872 235788888888 55554443455556666666665 553
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=119.38 Aligned_cols=103 Identities=23% Similarity=0.158 Sum_probs=86.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--CCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~--~~~~~D~V 185 (311)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|++|+..+++.+ +++..+|+.+. ++.. ....||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~-~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDL-LRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHH-HHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHH-HHHHHhcCCCeeEE
Confidence 7889999999999999999987 4799999999999999999999999887 99999998641 1100 01689999
Q ss_pred EecCCC--------------hhhHHHHHHhcccCCcEEEEecCC
Q 021550 186 FLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++|+|. ...++..+.+.|+|||.+++.+..
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999875 135788899999999999876543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-12 Score=116.91 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=102.4
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-- 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-- 176 (311)
.++..+...++.+|||+|||+|.++..+++. ..+|+++|+++++++.|++|+..+++.+ +++..+|+.+ .++.
T Consensus 277 ~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~f~~~d~~~-~l~~~~ 351 (433)
T 1uwv_A 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEE-DVTKQP 351 (433)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTS-CCSSSG
T ss_pred HHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEECCHHH-Hhhhhh
Confidence 4666777888899999999999999999987 5899999999999999999999988875 9999999975 2221
Q ss_pred cCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC--ceeeEEEeeceeeEEe
Q 021550 177 EFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF--TDIRTFEILLRTYEIR 246 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f--~~~~~~e~~~r~~~v~ 246 (311)
...+.||+|++|+|.. .++++.+. .++|++.+++. -....+.+-...|.+ +| ..+..++.+....+++
T Consensus 352 ~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvs-c~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE 424 (433)
T 1uwv_A 352 WAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVS-CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 (433)
T ss_dssp GGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEE-SCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCE
T ss_pred hhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEE-CChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEE
Confidence 1115799999998843 23444443 36888877754 344555555556654 54 3344555555555554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=115.43 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=97.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--cC-C-CCcEEEEEecCCCC-CCCCcCCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TG-V-SSFVTVGVRDIQGQ-GFPDEFSGL 181 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~g-~-~~~v~~~~~D~~~~-~~~~~~~~~ 181 (311)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. .+ + ..+++++.+|+... .... ++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~ 151 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE---ER 151 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC---CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcC---CC
Confidence 456899999999999999998863 467999999999999999998764 22 2 34599999998641 1123 68
Q ss_pred ccEEEecCCChh------------hHHHHHHhcccCCcEEEEecC--C---HHHHHHHHHHHhhcCceeeEEEe
Q 021550 182 ADSIFLDLPQPW------------LAIPSAKKMLKQDGILCSFSP--C---IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 182 ~D~V~~d~~~~~------------~~l~~~~~~LkpgG~lv~~~~--~---~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
||+|++|.+.++ ++++.+.+.|+|||.+++... . .+....+.+.+++.|.....+..
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~ 225 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKN 225 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEE
Confidence 999999876543 679999999999999998632 2 24456666777766777665543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=117.93 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCc--CCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDE--FSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~~~--~~~~~D 183 (311)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+..+++.+ +++++.+|+.+ .++.. ....||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~-~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD-YFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH-HHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH-HHHHHHHhCCCcc
Confidence 57899999999999999999875 34699999999999999999999999874 59999999864 11100 015799
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+|++|+|.. ..++..+.+.|+|||.+++.+..
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999998862 12456778999999999876543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=120.05 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=86.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++.++++++.+|+.+..++
T Consensus 150 il~~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---- 222 (480)
T 3b3j_A 150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---- 222 (480)
T ss_dssp HHHTGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS----
T ss_pred HHHhhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC----
Confidence 555666678899999999999999988874 567999999998 9999999999999877799999999854443
Q ss_pred CCccEEEecCCC-------hhhHHHHHHhcccCCcEEEE
Q 021550 180 GLADSIFLDLPQ-------PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 180 ~~~D~V~~d~~~-------~~~~l~~~~~~LkpgG~lv~ 211 (311)
++||+|+++.+. ....+..+.+.|+|||.+++
T Consensus 223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 579999987651 23467788999999999974
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=114.89 Aligned_cols=124 Identities=17% Similarity=0.276 Sum_probs=93.3
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCCC--CCCCcCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQ--GFPDEFS 179 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~~--~~~~~~~ 179 (311)
...++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++... ++ ..+++++.+|+... .++.
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~--- 192 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--- 192 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT---
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC---
Confidence 34567899999999999999999863 5689999999999999999987653 33 24599999998641 2233
Q ss_pred CCccEEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC--H--HHHHHHHHHHhhcCce
Q 021550 180 GLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC--I--EQVQRSCESLRLNFTD 232 (311)
Q Consensus 180 ~~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~--~--~~~~~~~~~l~~~f~~ 232 (311)
+.||+|++|.+++ ..+++.+.+.|+|||.+++...+ . .......+.+++.|..
T Consensus 193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 258 (334)
T 1xj5_A 193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG 258 (334)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence 6899999987643 46899999999999999985322 2 2344555556555653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=114.90 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh---CCCcEE--EEEeCCHHHHHHHHHHHHhc-CCCCcEEEE--EecCCCC-----
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHV--YTFDFHEQRAASAREDFERT-GVSSFVTVG--VRDIQGQ----- 172 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v--~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~--~~D~~~~----- 172 (311)
..++.+|||+|||+|.++..++..+ .+...| +++|+|++|++.|++++... ++.+ +.+. ..++...
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLEN-VKFAWHKETSSEYQSRML 128 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT-EEEEEECSCHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCc-ceEEEEecchhhhhhhhc
Confidence 4577899999999998776544332 245644 99999999999999988653 4444 5554 3343221
Q ss_pred -CCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 173 -GFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++++ ++||+|++ +.+++..+|.++.++|||||.+++..
T Consensus 129 ~~~~~---~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 129 EKKEL---QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTTCC---CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCC---CceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 1334 78999985 46788899999999999999998753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=112.60 Aligned_cols=108 Identities=11% Similarity=0.000 Sum_probs=80.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----cEEEEEecCCCC--------C
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQ--------G 173 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-----~v~~~~~D~~~~--------~ 173 (311)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+... .+++...|+... .
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35789999999999876665554 35799999999999999999887655321 266778887321 2
Q ss_pred CCCcCCCCccEEEec--------CCChhhHHHHHHhcccCCcEEEEecCCHHHH
Q 021550 174 FPDEFSGLADSIFLD--------LPQPWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d--------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
++. ++||+|++. ..+...+++++.++|||||.+++..+....+
T Consensus 125 ~~~---~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~ 175 (302)
T 2vdw_A 125 FYF---GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKL 175 (302)
T ss_dssp CCS---SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred ccC---CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 344 789999742 2344678999999999999999887775543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=109.68 Aligned_cols=110 Identities=24% Similarity=0.255 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+ .++.+|||+|||+|.++..+++. .+++++|+++.+++.|++++...+ .++++..+|+....++
T Consensus 24 ~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 24 VAWVLEQV--EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-
T ss_pred HHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-
Confidence 33455554 46789999999999999888765 699999999999999999987766 2389999998764433
Q ss_pred cCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 177 EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 177 ~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
++||+|++.. .+...+++++.++|+|||.+++-.+....
T Consensus 95 ---~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 142 (243)
T 3d2l_A 95 ---EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYK 142 (243)
T ss_dssp ---SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred ---CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHH
Confidence 6799998743 23346889999999999999987666544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=105.26 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE-EecCCCCC--
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPT--------GHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQG-- 173 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~--------~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~-~~D~~~~~-- 173 (311)
.+.++.+|||+|||+|.++..+++.+++. ++|+++|+++.. ...+ +++. .+|+....
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~-~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEG-ATFLCPADVTDPRTS 86 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTT-CEEECSCCTTSHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCC-CeEEEeccCCCHHHH
Confidence 36789999999999999999999997543 899999999842 2233 7788 78875421
Q ss_pred ------CCCcCCCCccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCc
Q 021550 174 ------FPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231 (311)
Q Consensus 174 ------~~~~~~~~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~ 231 (311)
++. ++||+|+++.... ..++..+.++|+|||.+++..........+...++..|.
T Consensus 87 ~~~~~~~~~---~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~ 163 (196)
T 2nyu_A 87 QRILEVLPG---RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQ 163 (196)
T ss_dssp HHHHHHSGG---GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEE
T ss_pred HHHHHhcCC---CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhc
Confidence 222 5799999865311 367889999999999999876655666667777765555
Q ss_pred eee
Q 021550 232 DIR 234 (311)
Q Consensus 232 ~~~ 234 (311)
.+.
T Consensus 164 ~v~ 166 (196)
T 2nyu_A 164 NVR 166 (196)
T ss_dssp EEE
T ss_pred ceE
Confidence 443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=106.20 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC----cCC--
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD----EFS-- 179 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~----~~~-- 179 (311)
+.++.+|||+|||+|.++..+++. .++|+++|+++.. ... .++++++|+.+..... ...
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~-~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIA-GVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCT-TCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCC-CeEEEEccccCHHHHHHHHHHhhcc
Confidence 578999999999999999999887 6899999999741 233 3899999997532110 000
Q ss_pred --CCccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceee
Q 021550 180 --GLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 180 --~~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
+.||+|++|++.. ..++..+.++|+|||.|++..........+...++..|..++
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~ 160 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYK 160 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEE
Confidence 3799999986421 246788899999999999765545556677777776776554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=107.76 Aligned_cols=96 Identities=22% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..+ +..+++++|+++.+++.|+++. .++.+..+|+...++++ ++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~---~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPG---ESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCS---SCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCC---CcEEEEEE
Confidence 7899999999999988766 2349999999999999999875 23888999987655555 78999986
Q ss_pred -----cCCChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 188 -----DLPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 188 -----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+.+++..++.++.++|+|||.+++..+...
T Consensus 102 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 102 FTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp ESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred cChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 345778899999999999999998766543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=118.90 Aligned_cols=106 Identities=23% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--CCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~--~~~~~D~ 184 (311)
.++.+|||+|||+|.++..++.. +..+|+++|+++.+++.|++|+..+++.+++++..+|+.+. ++.. ....||+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~-~~~~~~~~~~fD~ 292 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE-MEKLQKKGEKFDI 292 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHTTCCEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH-HHHHHhhCCCCCE
Confidence 47899999999999999999986 45799999999999999999999999874699999998641 1100 0168999
Q ss_pred EEecCCC--------------hhhHHHHHHhcccCCcEEEEecCC
Q 021550 185 IFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 185 V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
|++|+|. ...++..+.+.|+|||.+++.+..
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9999885 235788999999999998876443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=123.12 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=91.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc------CCCCcEEEEEecCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------GVSSFVTVGVRDIQ 170 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~v~~~~~D~~ 170 (311)
...++..+...++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++... +.. ++++.++|+.
T Consensus 710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~ 788 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSIL 788 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTT
T ss_pred HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchH
Confidence 334666777778999999999999999999987434579999999999999999876532 444 4999999998
Q ss_pred CCCCCCcCCCCccEEEec-----CCChh--hHHHHHHhcccCCcEEEEecCCHH
Q 021550 171 GQGFPDEFSGLADSIFLD-----LPQPW--LAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d-----~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
...+.. +.||+|++. ++++. .++..+.++|+|| .+++..|..+
T Consensus 789 dLp~~d---~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~e 838 (950)
T 3htx_A 789 EFDSRL---HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYE 838 (950)
T ss_dssp SCCTTS---CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred hCCccc---CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence 766655 789999863 34433 4789999999999 7777776553
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=111.43 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=88.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..++..+ .+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+.+ .++
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--- 231 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP--- 231 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC---
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC---
Confidence 4566666666 999999999999999999986 6789999999 99999999998777766679999999974 444
Q ss_pred CCCccEEEec-----CCChh--hHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLD-----LPQPW--LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d-----~~~~~--~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++. .+++. .+++++.+.|+|||++++..
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 579999863 34443 78999999999999999874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=111.88 Aligned_cols=122 Identities=20% Similarity=0.092 Sum_probs=94.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++... +. ..++++..+|+... + ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-~-----~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-I-----KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-C-----CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-H-----hhCC
Confidence 35589999999999999998887 4 89999999999999999876431 11 34599999998742 2 5799
Q ss_pred EEEecCCChhhHHHHHHhcccCCcEEEEec--CCH--HHHHHHHHHHhhcCceeeEEE
Q 021550 184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFS--PCI--EQVQRSCESLRLNFTDIRTFE 237 (311)
Q Consensus 184 ~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~--~~~--~~~~~~~~~l~~~f~~~~~~e 237 (311)
+|++|.+++..+++.+.+.|+|||.+++.. +.. .....+.+.+++.|.....+.
T Consensus 142 ~Ii~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~ 199 (262)
T 2cmg_A 142 LIFCLQEPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFV 199 (262)
T ss_dssp EEEESSCCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEECCCChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEE
Confidence 999999999989999999999999999853 222 345555666665576554433
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=114.25 Aligned_cols=111 Identities=10% Similarity=0.235 Sum_probs=90.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.+++. ++ +..+|+++|+++.+++.|++|+..+++.+++++..+|+.+.. +.||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEE
Confidence 5789999999999999998 76 368999999999999999999999998656999999997522 5799999
Q ss_pred ecCC-ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 187 LDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 187 ~d~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+|+| ....++..+.+.|+|||.+++++.... .....+.+.+
T Consensus 264 ~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~ 305 (336)
T 2yx1_A 264 MNLPKFAHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEK 305 (336)
T ss_dssp ECCTTTGGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHH
T ss_pred ECCcHhHHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHH
Confidence 9976 345789999999999999887543332 4445555544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=109.59 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--------------------------
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-------------------------- 158 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-------------------------- 158 (311)
...++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 44678899999999999998887662 25999999999999999988754321
Q ss_pred --CCcE-EEEEecCCCCCC-CCcCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEec
Q 021550 159 --SSFV-TVGVRDIQGQGF-PDEFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 159 --~~~v-~~~~~D~~~~~~-~~~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..++ .+..+|+..... +....++||+|++.. +++..++.++.++|+|||.+++..
T Consensus 131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 0126 889999875322 221125799998632 245678999999999999998754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=112.63 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=85.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~ 184 (311)
....+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+... +++ +.||+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----TGFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----CCCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----CCcCE
Confidence 466899999999999999999985 6789999999 999999999998888777799999999853 244 57999
Q ss_pred EEe-----cCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++ +.+++ ..+|+++.+.|+|||.+++..+
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 986 33433 3679999999999999998644
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-12 Score=113.38 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=91.2
Q ss_pred HHHHhcCCCC-CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC
Q 021550 99 FVIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD 176 (311)
Q Consensus 99 ~i~~~~~~~~-g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~ 176 (311)
.++..++..+ +.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++++...++.+++++..+|+.+.. +..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 4566667767 8899999999999999999985 6789999999 8899999999988888778999999997533 122
Q ss_pred cCCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++ +.+++ ..+++++.+.|+|||.+++..
T Consensus 247 ---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 247 ---GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 56999986 33443 578999999999999998864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=109.86 Aligned_cols=93 Identities=25% Similarity=0.282 Sum_probs=77.8
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+..++++++.+|+.+.
T Consensus 13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 3445566888899999999999999999999999998 4699999999999999999987766645699999999754
Q ss_pred CCCCcCCCCccEEEecCCChh
Q 021550 173 GFPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~ 193 (311)
.+ ..||+|+.++|-.+
T Consensus 90 ~~-----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 90 DL-----PFFDTCVANLPYQI 105 (285)
T ss_dssp CC-----CCCSEEEEECCGGG
T ss_pred cc-----hhhcEEEEecCccc
Confidence 33 36999999988554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-12 Score=106.03 Aligned_cols=103 Identities=22% Similarity=0.355 Sum_probs=83.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~ 176 (311)
.++..+. .++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++. .++..+|+.. ..+++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~ 91 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEE 91 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCT
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCC
Confidence 3556665 67899999999999999999887 3 89999999999999888642 3677888865 33444
Q ss_pred cCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 177 EFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.||+|++ +.+++..++.++.+.|+|||.+++..|..
T Consensus 92 ---~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 92 ---EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp ---TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred ---CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 68999986 35678889999999999999999876553
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=108.20 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=88.2
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeC-CHHHHHHHHHHH-----HhcCCC----CcEEEEEecC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDF-HEQRAASAREDF-----ERTGVS----SFVTVGVRDI 169 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~-----~~~g~~----~~v~~~~~D~ 169 (311)
+.......++.+|||+|||+|.+++.+++. +..+|+++|+ ++.+++.|++|+ ...++. +++++...|.
T Consensus 71 l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~ 148 (281)
T 3bzb_A 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRW 148 (281)
T ss_dssp HHHCGGGTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCT
T ss_pred HHhcchhcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecC
Confidence 444445568899999999999999988875 3469999999 899999999999 455543 3477776665
Q ss_pred CCC--CC----CCcCCCCccEEEe-cC----CChhhHHHHHHhccc---C--CcEEEE-ecCCHH----HHHHHHHHHhh
Q 021550 170 QGQ--GF----PDEFSGLADSIFL-DL----PQPWLAIPSAKKMLK---Q--DGILCS-FSPCIE----QVQRSCESLRL 228 (311)
Q Consensus 170 ~~~--~~----~~~~~~~~D~V~~-d~----~~~~~~l~~~~~~Lk---p--gG~lv~-~~~~~~----~~~~~~~~l~~ 228 (311)
.+. .+ +. +.||+|++ ++ +....++..+.++|+ | ||.+++ +.+... ....+.+.+++
T Consensus 149 ~~~~~~~~~~~~~---~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~ 225 (281)
T 3bzb_A 149 GDSPDSLQRCTGL---QRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNA 225 (281)
T ss_dssp TSCTHHHHHHHSC---SSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHH
T ss_pred CCccHHHHhhccC---CCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHh
Confidence 421 11 22 68999986 43 345578999999999 9 998655 454331 23455556655
Q ss_pred -c-CceeeE
Q 021550 229 -N-FTDIRT 235 (311)
Q Consensus 229 -~-f~~~~~ 235 (311)
+ |...+.
T Consensus 226 ~G~f~v~~~ 234 (281)
T 3bzb_A 226 DGALIAEPW 234 (281)
T ss_dssp STTEEEEEE
T ss_pred cCCEEEEEe
Confidence 6 665444
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=109.95 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=84.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC------CCCcEEEEEecCCCCC----CCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG------VSSFVTVGVRDIQGQG----FPD 176 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------~~~~v~~~~~D~~~~~----~~~ 176 (311)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|+++....+ ...++.+..+|+.... ++.
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 47889999999999999988874 46899999999999999999886542 1224899999998643 321
Q ss_pred cCCCCccEEEecCC---------ChhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 177 EFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 177 ~~~~~~D~V~~d~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
..++||+|++... ++..++.++.++|+|||.+++..+....
T Consensus 111 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 160 (313)
T 3bgv_A 111 -PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE 160 (313)
T ss_dssp -TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred -CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH
Confidence 0158999986432 2347899999999999999998887653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=107.17 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++.. . . +..+|+....++. +.||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~-~-~~~~d~~~~~~~~---~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K-N-VVEAKAEDLPFPS---GAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S-C-EEECCTTSCCSCT---TCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C-C-EEECcHHHCCCCC---CCEEEEEE
Confidence 7889999999999999998876 4699999999999999998743 1 1 7788887655555 78999986
Q ss_pred c------CCChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 188 D------LPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 188 d------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
. .+++..++.++.++|+|||.+++..+...
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 121 LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred cchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 4 25677899999999999999998776543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-12 Score=109.76 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=77.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++. ++.+..+|+....+ . +.||+|+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~---~~fD~v~ 115 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-G---RRFSAVT 115 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-S---CCEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-c---CCcCEEE
Confidence 46789999999999999999877 4689999999999999998743 38899999986444 3 7899998
Q ss_pred ecC------C---ChhhHHHHHHhcccCCcEEEEe
Q 021550 187 LDL------P---QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~------~---~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. + +...+++++.++|+|||.+++-
T Consensus 116 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 116 CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp ECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 753 2 3346799999999999999974
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=108.37 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=85.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.+ +..+|+++|+++.+++.|+++. . ++.+..+|+...++++ ++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~~~---~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSHRLPFSD---TSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTSCSBCT---TCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcchhhCCCCC---CceeEEE
Confidence 578899999999999999999886 4679999999999999998763 2 3788999987655555 7899998
Q ss_pred ecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 187 LDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 187 ~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
+... ...+.++.++|+|||.+++..+....+.++.
T Consensus 154 ~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 188 (269)
T 1p91_A 154 RIYA--PCKAEELARVVKPGGWVITATPGPRHLMELK 188 (269)
T ss_dssp EESC--CCCHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred EeCC--hhhHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence 7543 2478999999999999999887765544443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=112.12 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=93.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCC----cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPT----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
...++.+|||+|||+|.++..+++.+... .+++++|+++.+++.|+.++...++ + +.+..+|... .... +
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~-~~i~~~D~l~-~~~~---~ 200 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-K-MTLLHQDGLA-NLLV---D 200 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-C-CEEEESCTTS-CCCC---C
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-C-ceEEECCCCC-cccc---C
Confidence 45577899999999999999999886322 7899999999999999999988887 3 8899999874 3333 6
Q ss_pred CccEEEecCCCh-----------------------hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh
Q 021550 181 LADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL 228 (311)
Q Consensus 181 ~~D~V~~d~~~~-----------------------~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~ 228 (311)
.||+|+.++|-. ..++..+.+.|+|||++++..|.. .+...+.+.+.+
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~ 275 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 275 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence 899999998810 147899999999999998876532 334555566554
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=110.09 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=97.3
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC-------------------------------------C
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-------------------------------------T 133 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~-------------------------------------~ 133 (311)
.+.+..++.++.+++..++..|||.+||+|.+++.++..... .
T Consensus 177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 445566667888999999999999999999999988876421 1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---------hhHHHHHHhccc
Q 021550 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKMLK 204 (311)
Q Consensus 134 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------~~~l~~~~~~Lk 204 (311)
.+|+++|+++.+++.|++|+..+|+.+.+++.++|+.+...+ ..||+|++|+|-- ..+...+.+.|+
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~----~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN----KINGVLISNPPYGERLLDDKAVDILYNEMGETFA 332 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC----CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc----CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999988899999999864332 5799999999821 234444555555
Q ss_pred C--CcEEEEecCCHH
Q 021550 205 Q--DGILCSFSPCIE 217 (311)
Q Consensus 205 p--gG~lv~~~~~~~ 217 (311)
+ ||.++++++..+
T Consensus 333 ~~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 333 PLKTWSQFILTNDTD 347 (384)
T ss_dssp TCTTSEEEEEESCTT
T ss_pred hCCCcEEEEEECCHH
Confidence 4 999998888654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-11 Score=110.96 Aligned_cols=124 Identities=9% Similarity=0.033 Sum_probs=97.4
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC-------------------------------------
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP------------------------------------- 132 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~------------------------------------- 132 (311)
..+.+..++.++.+++..++..|||.+||+|.+++.++.....
T Consensus 183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 4456666677889999999999999999999999888876421
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---------hhHHHHHHhcc
Q 021550 133 TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKML 203 (311)
Q Consensus 133 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------~~~l~~~~~~L 203 (311)
..+|+++|+++.+++.|++|+..+|+.+.+++.++|+.+...+ ..||+|++|+|-- ..+...+.+.|
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~----~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l 338 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE----DEYGVVVANPPYGERLEDEEAVRQLYREMGIVY 338 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC----CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC----CCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence 1469999999999999999999999987799999999864332 5799999999831 12344444555
Q ss_pred cC--CcEEEEecCCHH
Q 021550 204 KQ--DGILCSFSPCIE 217 (311)
Q Consensus 204 kp--gG~lv~~~~~~~ 217 (311)
++ ||.++++++..+
T Consensus 339 k~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 339 KRMPTWSVYVLTSYEL 354 (393)
T ss_dssp HTCTTCEEEEEECCTT
T ss_pred hcCCCCEEEEEECCHH
Confidence 54 999998887654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=100.73 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=83.1
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCC---------
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQG--------- 173 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~D~~~~~--------- 173 (311)
.+.+..+|||+|| |+.++.+++. ++++|+++|.+++..+.|+++++..|+ .++++++.+|+.+..
T Consensus 27 ~l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 27 AYEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HHHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred HhhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccch
Confidence 4456789999998 5788888874 379999999999999999999999997 777999999975310
Q ss_pred ----CCC-------c-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEE
Q 021550 174 ----FPD-------E-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ----~~~-------~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++. . ..+.||+||+|..-....+..+.+.|+|||.|++
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence 111 0 1167999999987666788889999999999975
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.1e-12 Score=115.67 Aligned_cols=105 Identities=22% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCc--CCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-SSFVTVGVRDIQGQGFPDE--FSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~~~v~~~~~D~~~~~~~~~--~~~~~D 183 (311)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+..+++ .++++++.+|+.+. ++.. ....||
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~-~~~~~~~~~~fD 295 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL-LRTYRDRGEKFD 295 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH-HHHHHHTTCCEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH-HHHHHhcCCCCC
Confidence 57899999999999999999986 357999999999999999999999998 64599999998642 1100 015799
Q ss_pred EEEecCCC--------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 184 SIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 184 ~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|++|+|. ...++..+.+.|+|||.+++.+.
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999874 13578889999999999987543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=111.44 Aligned_cols=98 Identities=22% Similarity=0.179 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++|+..+++. +++..+|+.+. + . ..||+|
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~-~-~---~~fD~V 357 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREV-S-V---KGFDTV 357 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTC-C-C---TTCSEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHc-C-c---cCCCEE
Confidence 567899999999999999999886 479999999999999999999988875 99999999742 2 2 379999
Q ss_pred EecCCCh---hhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQP---WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++|+|.. ..+++.+ ..|+|+|.+++.+.
T Consensus 358 v~dPPr~g~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 358 IVDPPRAGLHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp EECCCTTCSCHHHHHHH-HHHCCSEEEEEESC
T ss_pred EEcCCccchHHHHHHHH-HhcCCCcEEEEECC
Confidence 9998832 2344544 45999999887553
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=110.75 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=91.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-----CcEEEEEecCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-----SFVTVGVRDIQGQG 173 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~v~~~~~D~~~~~ 173 (311)
.....++++||++|||+++|+|+-|.+++..+ +.+.|+++|+++..++..++++.+.+.. +++.+...|.....
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence 45678899999999999999999999999864 5678999999999999999999887653 34888888876421
Q ss_pred -CCCcCCCCccEEEecCCCh-----------------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 174 -FPDEFSGLADSIFLDLPQP-----------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 174 -~~~~~~~~~D~V~~d~~~~-----------------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.. +.||.|++|+|+. .++|..+.++|||||+|| |+.|.
T Consensus 218 ~~~~---~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV-YsTCS 286 (359)
T 4fzv_A 218 ELEG---DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV-YSTCS 286 (359)
T ss_dssp HHST---TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE-EEESC
T ss_pred hhcc---ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE-EEeCC
Confidence 122 6899999998842 146788999999999988 76654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-11 Score=109.87 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=96.5
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC-------------------------------------C
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-------------------------------------T 133 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~-------------------------------------~ 133 (311)
.+.+..++.++.+++..++..|||++||+|.+++.++..... .
T Consensus 178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 345555667888899999999999999999999998876421 1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---------hhHHHHHHhccc
Q 021550 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLAIPSAKKMLK 204 (311)
Q Consensus 134 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------~~~l~~~~~~Lk 204 (311)
.+|+++|+++.+++.|++|+..+|+.+.+++.++|+.+... . ..||+|++|+|-- ..+...+.+.|+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~---~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-E---DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-S---CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-C---CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999988779999999986333 2 6799999999832 123444555565
Q ss_pred C--CcEEEEecCCHH
Q 021550 205 Q--DGILCSFSPCIE 217 (311)
Q Consensus 205 p--gG~lv~~~~~~~ 217 (311)
+ |+.++++++..+
T Consensus 334 ~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 334 KLKNWSYYLITSYED 348 (385)
T ss_dssp TSBSCEEEEEESCTT
T ss_pred hCCCCEEEEEECCHH
Confidence 5 888888877544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=122.11 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=86.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCC-CCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ-GFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~-~~~~~~~~~~D~ 184 (311)
.+|.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..+++. ++++++++|+.+. .... +.||+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~---~~fD~ 612 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN---EQFDL 612 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC---CCEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC---CCccE
Confidence 47899999999999999998874 4578999999999999999999999987 4699999998741 1122 68999
Q ss_pred EEecCCCh----------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 185 IFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 185 V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
|++|+|.. ..++..+.++|+|||.|++.+..
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 99999841 24588899999999999965443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=112.27 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=88.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCC-CcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFP-DEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~D~~~~~~~-~~~~~~~D~ 184 (311)
.+|.+|||++||+|.+++.++...++..+|+++|+++.+++.+++|++.+++.++ ++++.+|+... +. . ..+.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~-l~~~-~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF-LRKE-WGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-HHSC-CSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-HHHh-hCCCCcE
Confidence 5689999999999999999999864457999999999999999999999999877 99999998641 11 1 1157999
Q ss_pred EEecCCC-hhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQ-PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~-~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++|++. +..++..+.+.|++||.+++.+.
T Consensus 129 V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 129 VDLDPFGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEECCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 9999864 34689999999999998887554
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=108.74 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=85.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-----------------CCC----------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----------------GVS---------- 159 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------------g~~---------- 159 (311)
.++.+|||+|||+|.....++.. +..+|+++|+|+.+++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 37889999999999955434332 3579999999999999998865431 100
Q ss_pred --CcEEEEEecCCC-CCCCC--cCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEecC-----------
Q 021550 160 --SFVTVGVRDIQG-QGFPD--EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFSP----------- 214 (311)
Q Consensus 160 --~~v~~~~~D~~~-~~~~~--~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~~----------- 214 (311)
..+.+..+|+.. .+++. ...++||+|++.. +++..++.++.++|||||.|++...
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~ 227 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 227 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCe
Confidence 015567778875 33321 1115699998642 2456789999999999999987421
Q ss_pred ----CHHHHHHHHHHHhh-cCceeeEE
Q 021550 215 ----CIEQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 215 ----~~~~~~~~~~~l~~-~f~~~~~~ 236 (311)
..-...++.+.|.+ +|..++..
T Consensus 228 ~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 228 RLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 01134556666766 78765543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=102.35 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|+++. .+ +.+..+|+....+ . +.||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~-~~~~~~d~~~~~~-~---~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PD-ATLHQGDMRDFRL-G---RKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TT-CEEEECCTTTCCC-S---SCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CC-CEEEECCHHHccc-C---CCCcEEE
Confidence 678899999999999999999884 48999999999999998863 23 8899999976444 3 7899999
Q ss_pred e-c-----CC---ChhhHHHHHHhcccCCcEEEEecC
Q 021550 187 L-D-----LP---QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~-d-----~~---~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ . .+ +...++.++.+.|+|||.+++..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 106 SMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred EcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 3 2 22 235789999999999999997544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=105.09 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC--CCCc
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF--SGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~--~~~~ 182 (311)
.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++. . .++++..+|+.+....... ...|
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccccccccccccCc
Confidence 36788999999999999999999983 389999999999999998762 2 2499999999752221100 0248
Q ss_pred cEEEec-----CC--ChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 183 DSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 183 D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
|+|++. .+ +...++.++.++|+|||.+++.....
T Consensus 126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999853 23 45689999999999999988765443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=111.28 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=86.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---------------CCCCcEEEEEecCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------------GVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------g~~~~v~~~~~D~~~~ 172 (311)
++.+|||+|||+|.+++.++... +..+|+++|+++++++.+++|++.+ ++.+ +++.++|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence 68899999999999999999986 4578999999999999999999998 7766 99999998641
Q ss_pred CCCCcCCCCccEEEecCCCh-hhHHHHHHhcccCCcEEEEecC
Q 021550 173 GFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~-~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.. ..+.||+|++|++.. ..++..+.+.|++||.+++.+.
T Consensus 125 -~~~-~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 125 -MAE-RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp -HHH-STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -HHh-ccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEee
Confidence 110 015799999998754 6789999999999998877543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-11 Score=107.96 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. |..+++++|+ +..+. +++....+..+++++..+|+. ..++
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--- 246 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--- 246 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC---
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC---
Confidence 46677788889999999999999999999986 6789999999 44444 333333455567999999996 3343
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+||+|++ +.+++ ..+|+++.++|+|||++++..
T Consensus 247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 247 --HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred --CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6999985 45555 579999999999999999864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-12 Score=107.03 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=68.9
Q ss_pred HHHHhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCcEEEEE-ecCCCCC
Q 021550 99 FVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGV-RDIQGQG 173 (311)
Q Consensus 99 ~i~~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~v~~~~-~D~~~~~ 173 (311)
.++..+.+. ++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++...... .+ +.+.. .|+....
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 103 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDERVVVMEQFN-FRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTTEEEECSCC-GGGCCGGGCCSCC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCccccccccce-EEEeCHhHcCcCC
Confidence 355555554 4679999999999999999887 346999999999999987764322110 01 11111 1111000
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. ..||+++++. ..++.++.++|+|||.+++.
T Consensus 104 ~d~---~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 104 PSF---TSIDVSFISL---DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CSE---EEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred CCE---EEEEEEhhhH---HHHHHHHHHhccCCCEEEEE
Confidence 111 3455555443 67899999999999999875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=104.81 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=77.5
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. ..+ ++++.+|+.+.
T Consensus 35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~~~-v~vi~gD~l~~ 108 (295)
T 3gru_A 35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--YNN-IEIIWGDALKV 108 (295)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--CSS-EEEEESCTTTS
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--CCC-eEEEECchhhC
Confidence 3445667889999999999999999999999999998 48999999999999999999873 334 99999999875
Q ss_pred CCCCcCCCCccEEEecCCCh
Q 021550 173 GFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~ 192 (311)
.++. ..||.|+.++|-.
T Consensus 109 ~~~~---~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 109 DLNK---LDFNKVVANLPYQ 125 (295)
T ss_dssp CGGG---SCCSEEEEECCGG
T ss_pred Cccc---CCccEEEEeCccc
Confidence 6665 5799999998854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-11 Score=105.40 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=72.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+.....++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++...+..+ ++++.+|+...
T Consensus 28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~-v~~~~~D~~~~- 102 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNN-LEVYEGDAIKT- 102 (299)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCC-EEC----CCSS-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECchhhC-
Confidence 444556888889999999999999999999999876 4799999999999999999988777654 99999999753
Q ss_pred CCCcCCCCccEEEecCCChh
Q 021550 174 FPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~ 193 (311)
+. ..||+|++++|-.+
T Consensus 103 -~~---~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 103 -VF---PKFDVCTANIPYKI 118 (299)
T ss_dssp -CC---CCCSEEEEECCGGG
T ss_pred -Cc---ccCCEEEEcCCccc
Confidence 32 47999999988554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-10 Score=100.88 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=79.0
Q ss_pred CCCCEEEEEcccc---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-----------
Q 021550 107 VPGCLVLESGTGS---GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----------- 172 (311)
Q Consensus 107 ~~g~~VLdiG~G~---G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~----------- 172 (311)
.+..+|||+|||+ |.++..+++. .+..+|+++|+++.+++.|++++.. ..+++++.+|+.+.
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhc
Confidence 3457999999999 9877655554 4678999999999999999998743 23599999999741
Q ss_pred CCCCcCCCCccEEEec-----CCC--hhhHHHHHHhcccCCcEEEEecCC
Q 021550 173 GFPDEFSGLADSIFLD-----LPQ--PWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d-----~~~--~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.++. ..||+|++. +++ +..++.++.+.|+|||+|++....
T Consensus 152 ~~d~---~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 152 MIDF---SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HCCT---TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred cCCC---CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 1222 478998853 344 678999999999999999876443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=112.45 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=97.3
Q ss_pred eeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 90 QILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVA------------PTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 90 ~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
+.+.|..+. .++..+.+.++.+|||.|||+|.++..+++.+. +..+++|+|+++.+++.|+.++..+
T Consensus 152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~ 231 (445)
T 2okc_A 152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH 231 (445)
T ss_dssp GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence 445565544 577888888899999999999999999887642 2367999999999999999999888
Q ss_pred CCCC-cEEEEEecCCCCCCCCcCCCCccEEEecCCCh----------------------hhHHHHHHhcccCCcEEEEec
Q 021550 157 GVSS-FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 157 g~~~-~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~----------------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++.. .+++.++|....... ..||+|+.++|-. ..+++++.+.|+|||+++++.
T Consensus 232 g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 232 GIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp TCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 8752 378899998753322 5799999988711 257999999999999999887
Q ss_pred CC
Q 021550 214 PC 215 (311)
Q Consensus 214 ~~ 215 (311)
|.
T Consensus 308 p~ 309 (445)
T 2okc_A 308 PD 309 (445)
T ss_dssp EH
T ss_pred CC
Confidence 64
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=104.41 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=73.6
Q ss_pred HHHhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE-EecCCCCC---C
Q 021550 100 VIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQG---F 174 (311)
Q Consensus 100 i~~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~-~~D~~~~~---~ 174 (311)
++..+.+. ++.+|||+|||+|.++..+++. +.++|+++|+++.|++.+.++ . .++... ..|+.... +
T Consensus 76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~-----~-~rv~~~~~~ni~~l~~~~l 147 (291)
T 3hp7_A 76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ-----D-DRVRSMEQYNFRYAEPVDF 147 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT-----C-TTEEEECSCCGGGCCGGGC
T ss_pred HHHhcCCCccccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh-----C-cccceecccCceecchhhC
Confidence 55666654 5779999999999999988887 467999999999999875432 1 113222 23443211 2
Q ss_pred CCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 175 PDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. ..||+|++|.. ....+|.++.++|+|||.+++.
T Consensus 148 ~~---~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 148 TE---GLPSFASIDVSFISLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp TT---CCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred CC---CCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence 32 45999987654 4567899999999999999875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=110.10 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=92.8
Q ss_pred eecccH-HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 92 LYIADI-SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 92 ~~~~~~-~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
..|..+ ..++..+...++.+|||+|||+|.++..++++.++..+++++|+++.+++.| .++++.++|+.
T Consensus 22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~ 91 (421)
T 2ih2_A 22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL 91 (421)
T ss_dssp CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence 344443 3577777766678999999999999999999875568999999999988766 23899999997
Q ss_pred CCCCCCcCCCCccEEEecCCC--------------h--------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 171 GQGFPDEFSGLADSIFLDLPQ--------------P--------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~--------------~--------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
... +. +.||+|+.++|- . ..+++.+.+.|+|||.+++..|..
T Consensus 92 ~~~-~~---~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 92 LWE-PG---EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp GCC-CS---SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred hcC-cc---CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 532 23 689999998762 1 035888999999999999887753
Q ss_pred ----HHHHHHHHHHhh
Q 021550 217 ----EQVQRSCESLRL 228 (311)
Q Consensus 217 ----~~~~~~~~~l~~ 228 (311)
.....+.+.+.+
T Consensus 168 ~l~~~~~~~lr~~l~~ 183 (421)
T 2ih2_A 168 WLVLEDFALLREFLAR 183 (421)
T ss_dssp GGTCGGGHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHh
Confidence 234556666555
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=115.47 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCCC
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT-VGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~-~~~~D~~~~~~~~ 176 (311)
..++..+.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++ +...... +...+.....+++
T Consensus 97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCC
Confidence 34677778889999999999999999999886 46999999999999998865 3322111 1112221112233
Q ss_pred cCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCHHH-------------------HHHHHHHHhh-cCc
Q 021550 177 EFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQ-------------------VQRSCESLRL-NFT 231 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------------------~~~~~~~l~~-~f~ 231 (311)
++||+|++ +.+++..+++++.++|+|||.+++..|.... ...+...+++ +|.
T Consensus 170 ---~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 246 (416)
T 4e2x_A 170 ---GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFE 246 (416)
T ss_dssp ---CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEE
T ss_pred ---CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCE
Confidence 78999985 4678889999999999999999987665322 2345555555 676
Q ss_pred eeeEEE
Q 021550 232 DIRTFE 237 (311)
Q Consensus 232 ~~~~~e 237 (311)
.++..+
T Consensus 247 ~~~~~~ 252 (416)
T 4e2x_A 247 LVDVQR 252 (416)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 665544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-10 Score=102.83 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=86.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++...+..+..+|||+|||+|.++..++++. |..+++.+|. |++++.|++++...+ .++++++.+|+...++
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~---- 242 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL---- 242 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC----
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC----
Confidence 35666677788899999999999999999996 7889999997 889999998876555 4569999999975433
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|++++ +.+++ ..+|+++.+.|+|||++++..
T Consensus 243 -~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 243 -PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp -CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 34799875 55655 367999999999999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=92.40 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=79.2
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++. ++++..+|+.. ++ +.||+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~--~~----~~~D~ 113 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE--IS----GKYDT 113 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG--CC----CCEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH--CC----CCeeE
Confidence 4567899999999999999999876 45689999999999999998864 38899999975 33 57999
Q ss_pred EEecCCC-------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQ-------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|++++|- ...++..+.+.+ |+ +++..+. .....+.+.+..
T Consensus 114 v~~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~~~-~~~~~~~~~~~~ 160 (200)
T 1ne2_A 114 WIMNPPFGSVVKHSDRAFIDKAFETS--MW-IYSIGNA-KARDFLRREFSA 160 (200)
T ss_dssp EEECCCC-------CHHHHHHHHHHE--EE-EEEEEEG-GGHHHHHHHHHH
T ss_pred EEECCCchhccCchhHHHHHHHHHhc--Cc-EEEEEcC-chHHHHHHHHHH
Confidence 9998872 235788888887 44 4433322 334445555544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-11 Score=107.81 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=83.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEE--EecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVG--VRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~--~~D~~~~~~~~ 176 (311)
+.+...+.++.+|||+|||+|.++..+++. ++|+++|+++ ++..++++.. ......++.+. ++|+.. +++
T Consensus 74 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~~ 146 (276)
T 2wa2_A 74 IDERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--MEP 146 (276)
T ss_dssp HHHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--CCC
T ss_pred HHHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--CCC
Confidence 444445678999999999999999988876 6899999998 5333221100 00111147888 889875 444
Q ss_pred cCCCCccEEEecCC----Chh-------hHHHHHHhcccCCc--EEEE--ecCCHHHHHHHHHHHhhcCceeeE
Q 021550 177 EFSGLADSIFLDLP----QPW-------LAIPSAKKMLKQDG--ILCS--FSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~-------~~l~~~~~~LkpgG--~lv~--~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
++||+|+++.. .++ .+|..+.++|+||| .|++ +.|....+.++...++..|.....
T Consensus 147 ---~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f~~v~v 217 (276)
T 2wa2_A 147 ---FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARFGGGLI 217 (276)
T ss_dssp ---CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEE
T ss_pred ---CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHcCCEEE
Confidence 78999999865 211 36888999999999 8876 344444344555555555554443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-11 Score=106.07 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=81.3
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeC----CHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDF----HEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFP 175 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~----~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~ 175 (311)
.....+.++.+|||+|||+|.++..++++ ++|+++|+ ++.+++.+. ....+. +.+.+..+ |+.. ++
T Consensus 75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~--l~ 145 (305)
T 2p41_A 75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFF--IP 145 (305)
T ss_dssp HHTTSSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTT--SC
T ss_pred HHcCCCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEecccccc--CC
Confidence 33334678899999999999999998876 58999999 554332111 011121 34888888 8764 34
Q ss_pred CcCCCCccEEEecCCCh--------h---hHHHHHHhcccCCcEEEEecCC--HHHHHHHHHHHhhcCce
Q 021550 176 DEFSGLADSIFLDLPQP--------W---LAIPSAKKMLKQDGILCSFSPC--IEQVQRSCESLRLNFTD 232 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~--------~---~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~f~~ 232 (311)
. ++||+|++|.... . .+|..+.++|+|||.|++-... ......+...++..|..
T Consensus 146 ~---~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~f~~ 212 (305)
T 2p41_A 146 P---ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGG 212 (305)
T ss_dssp C---CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCC
T ss_pred c---CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHcCC
Confidence 4 6899999986531 1 3678888999999999874333 35556666666554443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.4e-10 Score=97.82 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=99.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--C--CCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--G--VSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g--~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
...+||.||.|.|..+..+++.. +..+|+.+|+++..++.+++.+... + -+.+++++.+|+.. .+. ...++||
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~-~l~-~~~~~yD 159 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN-FVN-QTSQTFD 159 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT-TTS-CSSCCEE
T ss_pred CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH-HHh-hccccCC
Confidence 45799999999999999998873 4579999999999999999987542 1 14579999999985 222 2336899
Q ss_pred EEEecCCChh---------hHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEee
Q 021550 184 SIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 184 ~V~~d~~~~~---------~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+|++|.+++. ++++.+.+.|+|||.+++.+.+ .+.+..+.+.+++-|.....+...
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~ 228 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAA 228 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeee
Confidence 9999987653 6899999999999999985332 245666667777678777665544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=111.55 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=97.5
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC---------------------------------------
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA--------------------------------------- 131 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~--------------------------------------- 131 (311)
.+.+..++.++.+++..++..|||.+||+|.+++.++....
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 45556666788899999999999999999999988876531
Q ss_pred --CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh------------hhHHH
Q 021550 132 --PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------------WLAIP 197 (311)
Q Consensus 132 --~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~------------~~~l~ 197 (311)
+..+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+...+. ..+.||+|+.|+|-- ...+.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~ 331 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGERLDSEPALIALHSLLG 331 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-ccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence 125899999999999999999999999888999999998632221 013799999999821 12244
Q ss_pred HHHhcccCCcEEEEecCCHH
Q 021550 198 SAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 198 ~~~~~LkpgG~lv~~~~~~~ 217 (311)
..++.+.|||.++++++..+
T Consensus 332 ~~lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 332 RIMKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHHHCTTCEEEEEESCHH
T ss_pred HHHHhhCCCCeEEEEeCCHH
Confidence 45555668999999877644
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-10 Score=101.92 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=78.0
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++..+. ..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|+++ .++++..+|+.+ +++.
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~-- 261 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK-- 261 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC--
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC--
Confidence 444454 6677899999999999999999986 6789999999 8888766531 349999999984 5664
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+ |+|++ +.++. ..+|+++.++|+|||++++..
T Consensus 262 -~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 262 -G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp -C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99885 33433 367999999999999998853
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=101.65 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=75.4
Q ss_pred CCCEEEEEcccccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 021550 108 PGCLVLESGTGSGS----LTTSLARAVAP---TGHVYTFDFHEQRAASAREDFER-----------------------TG 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~----~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~-----------------------~g 157 (311)
++.+|||+|||+|. +++.+++.++. ..+|+++|+|+.+++.|++++.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 56666776542 35899999999999999986410 00
Q ss_pred -------CCCcEEEEEecCCCCCCCCcCCCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 158 -------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 -------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+...+.|.+.|+.+.+++. .+.||+|++. .. ....++..+.+.|+|||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~--~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCc--CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0124899999998644541 1689999862 22 225789999999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=100.35 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=78.9
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++..+. ..++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++ . .++++..+|+.+ +++.
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~-~~p~-- 259 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------F-PGVTHVGGDMFK-EVPS-- 259 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CCCC--
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------c-CCeEEEeCCcCC-CCCC--
Confidence 555555 6778999999999999999999986 6789999999 888776653 1 359999999985 6664
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+ |+|++ +.++. ..+|+++.+.|+|||++++..
T Consensus 260 -~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 260 -G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99885 34433 368999999999999999853
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-11 Score=107.51 Aligned_cols=125 Identities=14% Similarity=0.008 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEE--EecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVG--VRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~--~~D~~~~~~~~ 176 (311)
+.....+.++.+|||+|||+|.++..+++. ++|+++|+++ ++..+++... ......++.++ ++|+.. +++
T Consensus 66 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~~ 138 (265)
T 2oxt_A 66 MEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--LPV 138 (265)
T ss_dssp HHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--SCC
T ss_pred HHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--CCC
Confidence 444445678999999999999999888875 6899999998 4322221100 00011147888 888875 444
Q ss_pred cCCCCccEEEecCC----Chh-------hHHHHHHhcccCCc--EEEEec--CCHHHHHHHHHHHhhcCceee
Q 021550 177 EFSGLADSIFLDLP----QPW-------LAIPSAKKMLKQDG--ILCSFS--PCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~-------~~l~~~~~~LkpgG--~lv~~~--~~~~~~~~~~~~l~~~f~~~~ 234 (311)
++||+|++|.. .+. .+|..+.++|+||| .|++-. +....+.++...+...|....
T Consensus 139 ---~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~~v~ 208 (265)
T 2oxt_A 139 ---ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWGGGL 208 (265)
T ss_dssp ---CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred ---CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence 78999999765 211 36888999999999 888633 433333355555555554443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=98.71 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=74.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..++..+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. . .+++++++|+.+..
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~-~~v~~i~~D~~~~~ 88 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--Q-KNITIYQNDALQFD 88 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--C-TTEEEEESCTTTCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--C-CCcEEEEcchHhCC
Confidence 445566889999999999999999999999999987 37999999999999999998764 2 34999999998755
Q ss_pred CCCcC-CCCccEEEecCCCh
Q 021550 174 FPDEF-SGLADSIFLDLPQP 192 (311)
Q Consensus 174 ~~~~~-~~~~D~V~~d~~~~ 192 (311)
+++.. .+.|| |+.|+|-.
T Consensus 89 ~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 89 FSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp GGGSCCSSCEE-EEEECCHH
T ss_pred HHHhccCCCeE-EEecCCcc
Confidence 54321 14688 78898854
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=96.23 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..+ ..+++++|+++. ++.+..+|+...+++. +.||+
T Consensus 64 ~~~~~~~vLDiG~G~G~~~~~l------~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~---~~fD~ 118 (215)
T 2zfu_A 64 QRPASLVVADFGCGDCRLASSI------RNPVHCFDLASL----------------DPRVTVCDMAQVPLED---ESVDV 118 (215)
T ss_dssp TSCTTSCEEEETCTTCHHHHHC------CSCEEEEESSCS----------------STTEEESCTTSCSCCT---TCEEE
T ss_pred ccCCCCeEEEECCcCCHHHHHh------hccEEEEeCCCC----------------CceEEEeccccCCCCC---CCEeE
Confidence 3567889999999999988765 268999999987 2567888987655555 78999
Q ss_pred EEec----CCChhhHHHHHHhcccCCcEEEEecCCH--HHHHHHHHHHhh-cCceee
Q 021550 185 IFLD----LPQPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 185 V~~d----~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~-~f~~~~ 234 (311)
|++. .+++..++.++.++|+|||.+++..+.. ....++.+.+.+ +|..++
T Consensus 119 v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 119 AVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp EEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred EEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence 9853 3567789999999999999999865433 245666777766 776554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=104.80 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=76.8
Q ss_pred HHHHHHhcCCCCCCEEEEEccc------ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTG------SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G------~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
...++..+. .++.+||||||| +|..++.+++.+.|.++|+++|+++.+. .. ..+++++++|+.
T Consensus 206 Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~GDa~ 274 (419)
T 3sso_A 206 YDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEECCTT
T ss_pred HHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEEeccc
Confidence 333444443 356899999999 7777777877766789999999999972 11 234999999997
Q ss_pred CCCCC------CcCCCCccEEEecCCC----hhhHHHHHHhcccCCcEEEE
Q 021550 171 GQGFP------DEFSGLADSIFLDLPQ----PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 171 ~~~~~------~~~~~~~D~V~~d~~~----~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.++. . ++||+|+++... ...+|+++.++|||||++++
T Consensus 275 dlpf~~~l~~~d---~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi 322 (419)
T 3sso_A 275 DAEFLDRIARRY---GPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVI 322 (419)
T ss_dssp CHHHHHHHHHHH---CCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccchhhhhhccc---CCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEE
Confidence 64443 3 789999986543 45689999999999999998
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-12 Score=110.43 Aligned_cols=111 Identities=24% Similarity=0.249 Sum_probs=83.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++. . ..+++++.+|+.+.
T Consensus 14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQF 87 (245)
T ss_dssp CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhc
Confidence 3455667889999999999999999999999999988 3899999999999999887754 2 23599999999865
Q ss_pred CCCCcCCCCccEEEecCCChh----------------hHH----HHHHhcccCCcEEEEe
Q 021550 173 GFPDEFSGLADSIFLDLPQPW----------------LAI----PSAKKMLKQDGILCSF 212 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~----------------~~l----~~~~~~LkpgG~lv~~ 212 (311)
.++. .++| .|+.++|-.. .++ +.+.++|+|||.+++.
T Consensus 88 ~~~~--~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 88 QFPN--KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp TCCC--SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred Cccc--CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 5542 1468 6777766321 223 5577777788776643
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=100.81 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=78.2
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.|..+..++..+.+.++.+|||+|||+|.++..+++.+ +.++|+++|+++.+++.|++++..++ .+++++++|+...
T Consensus 11 ~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l 87 (301)
T 1m6y_A 11 IPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREA 87 (301)
T ss_dssp CCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGH
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHH
Confidence 34455567888899999999999999999999999986 46899999999999999999998877 3599999998652
Q ss_pred C--CCCcCCCCccEEEecCCChh
Q 021550 173 G--FPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 173 ~--~~~~~~~~~D~V~~d~~~~~ 193 (311)
. +.......||.|++|++...
T Consensus 88 ~~~l~~~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 88 DFLLKTLGIEKVDGILMDLGVST 110 (301)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCH
T ss_pred HHHHHhcCCCCCCEEEEcCccch
Confidence 1 11100146999999987543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=103.69 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=105.0
Q ss_pred ceeeecccHH-HHHHhcC----CCCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCC-C
Q 021550 89 TQILYIADIS-FVIMYLE----LVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVS-S 160 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~----~~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~ 160 (311)
.+.+.|..+. .|+..+. ..++.+|||.+||+|.+...+++.+. +...++|+|+++.++..|+.|+..+|+. .
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 276 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE 276 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcC
Confidence 4556677655 4566665 45788999999999999999888863 2578999999999999999999988884 3
Q ss_pred cEEEEEecCCCCCCCCcCCCCccEEEecCCC-------------h---------------hhHHHHHHhccc-CCcEEEE
Q 021550 161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ-------------P---------------WLAIPSAKKMLK-QDGILCS 211 (311)
Q Consensus 161 ~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~-------------~---------------~~~l~~~~~~Lk-pgG~lv~ 211 (311)
.+.+.++|.....++......||+|+.|+|- + ..++.++.+.|+ +||++++
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 4889999987643332222689999998871 0 126899999999 9999998
Q ss_pred ecCCHHH-----HHHHHHHHhh
Q 021550 212 FSPCIEQ-----VQRSCESLRL 228 (311)
Q Consensus 212 ~~~~~~~-----~~~~~~~l~~ 228 (311)
+.|..-- ...+.+.|-+
T Consensus 357 VlP~g~Lf~~~~~~~iRk~Lle 378 (542)
T 3lkd_A 357 VLPHGVLFRGNAEGTIRKALLE 378 (542)
T ss_dssp EEETHHHHCCTHHHHHHHHHHH
T ss_pred EecchHhhCCchhHHHHHHHHh
Confidence 8876521 2445555544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-10 Score=108.75 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=97.2
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC-----------------CcEEEEEeCCHHHHHHHH
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-----------------TGHVYTFDFHEQRAASAR 150 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~-----------------~~~v~~vD~~~~~~~~a~ 150 (311)
.+.+.|..+. .++..+.+.++.+|||.+||+|.++..+++.+.. ...++|+|+++.+++.|+
T Consensus 149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 3455566544 5778888888999999999999999988877532 137999999999999999
Q ss_pred HHHHhcCCCC----cEEEEEecCCCCC-CCCcCCCCccEEEecCCCh-------------------hhHHHHHHhcccCC
Q 021550 151 EDFERTGVSS----FVTVGVRDIQGQG-FPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQD 206 (311)
Q Consensus 151 ~~~~~~g~~~----~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~~~~-------------------~~~l~~~~~~Lkpg 206 (311)
.++..+++.+ ...+.++|..... ... ..||+|+.|+|-. ..++.++.+.|+||
T Consensus 229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~---~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENL---PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp HHHHTTTCCCBGGGTBSEEESCTTSHHHHTS---CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHhCCCccccccCCeEeCCCcccccccc---cCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 9998888764 2678888876422 222 6799999998721 25889999999999
Q ss_pred cEEEEecCCH
Q 021550 207 GILCSFSPCI 216 (311)
Q Consensus 207 G~lv~~~~~~ 216 (311)
|+++++.|..
T Consensus 306 Gr~a~V~p~~ 315 (541)
T 2ar0_A 306 GRAAVVVPDN 315 (541)
T ss_dssp EEEEEEEEHH
T ss_pred CEEEEEecCc
Confidence 9999887744
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=91.88 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=72.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..++..+++.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. . ++++++.+|+.+..
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~-~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDILQFK 89 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGGGCC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhcc--C-CCeEEEEChHHhCC
Confidence 444556888888889999999999999999999998 38999999999999999998753 2 34999999998755
Q ss_pred CCCcCCCCccEEEecCCChh
Q 021550 174 FPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~ 193 (311)
++.. ..| .|+.++|-.+
T Consensus 90 ~~~~--~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 90 FPKN--QSY-KIFGNIPYNI 106 (244)
T ss_dssp CCSS--CCC-EEEEECCGGG
T ss_pred cccC--CCe-EEEEeCCccc
Confidence 5531 345 5678887543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-10 Score=95.04 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.+..+|||+|||+|-++..++.. .|..+|+++|+++.+++.+++++..+|+. ..+...|... ..+. +.+|+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~-~~p~---~~~DvaL 203 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLE-DRLD---EPADVTL 203 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTT-SCCC---SCCSEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecc-cCCC---CCcchHH
Confidence 45679999999999999988876 37899999999999999999999998876 7888899874 3444 7899998
Q ss_pred ecCCCh-------hhHHHHHHhcccCCcEEEEecC
Q 021550 187 LDLPQP-------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~d~~~~-------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+...-+ ...+ .+.+.|+++|.+|.+-.
T Consensus 204 ~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 204 LLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp ETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 754422 1344 89999999999997644
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-09 Score=90.27 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=77.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.+++.++ +..+++++|+++.+++.+++++...+.. ..+...|.....++ +.+|+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~~~----~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAPPA----EAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSCCC----CBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCCCC----CCcchHH
Confidence 567899999999999998776 5799999999999999999999887743 88999999854443 7899997
Q ss_pred ecCCC------hhhHHHHHHhcccCCcEEEEec
Q 021550 187 LDLPQ------PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 187 ~d~~~------~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+...- .....-.+.+.|++++.++.+-
T Consensus 174 llk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 64321 1123448888999999988664
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-10 Score=97.18 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=78.4
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..++..+++.++ +|||+|||+|.++..+++. ..+|+++|+++++++.+++++.. .+++++++|+.+.
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~ 103 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLY 103 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGS
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhC
Confidence 34456678999999999 9999999999999999987 37999999999999999988652 3499999999875
Q ss_pred CCCCcCCCCccEEEecCCChh--hHHHHHHhc
Q 021550 173 GFPDEFSGLADSIFLDLPQPW--LAIPSAKKM 202 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~--~~l~~~~~~ 202 (311)
.+++. ..+|.|+.|+|-.. .++.+++..
T Consensus 104 ~~~~~--~~~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 104 PWEEV--PQGSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp CGGGS--CTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred Chhhc--cCccEEEecCcccccHHHHHHHhcC
Confidence 55531 26899999888432 344444433
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=100.22 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=80.0
Q ss_pred HHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.++..++ +.++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++ .. ++++..+|+.+ .++
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~~-- 266 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LS-GIEHVGGDMFA-SVP-- 266 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CT-TEEEEECCTTT-CCC--
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cC-CCEEEeCCccc-CCC--
Confidence 3555655 6778899999999999999999985 6789999999 888887664 23 39999999974 443
Q ss_pred CCCCccEEEe-----cCCChh--hHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFL-----DLPQPW--LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~ 212 (311)
. ||+|++ +.+++. .+|+++.++|+|||.+++.
T Consensus 267 --~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 267 --Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp --C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 899985 345555 7899999999999999876
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-10 Score=106.63 Aligned_cols=136 Identities=17% Similarity=0.097 Sum_probs=101.5
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC--------------CcEEEEEeCCHHHHHHHHHHH
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP--------------TGHVYTFDFHEQRAASAREDF 153 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~--------------~~~v~~vD~~~~~~~~a~~~~ 153 (311)
.+.+.|..+. +|+..+.+.++ +|||.+||+|.+...+++.+.. ...++|+|+++.+++.|+.|+
T Consensus 225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl 303 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM 303 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred CeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence 3556676655 57788887776 9999999999998887665410 358999999999999999999
Q ss_pred HhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecCCCh----------------------------------hhHHHH
Q 021550 154 ERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDLPQP----------------------------------WLAIPS 198 (311)
Q Consensus 154 ~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~~~~----------------------------------~~~l~~ 198 (311)
..+|+...+.+.++|..... +.. ..||+|+.|+|-. ..+++.
T Consensus 304 ~l~gi~~~i~i~~gDtL~~~~~~~---~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~ 380 (544)
T 3khk_A 304 VIRGIDFNFGKKNADSFLDDQHPD---LRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH 380 (544)
T ss_dssp HHTTCCCBCCSSSCCTTTSCSCTT---CCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH
T ss_pred HHhCCCcccceeccchhcCccccc---ccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH
Confidence 99888754555778876432 233 6899999988721 147899
Q ss_pred HHhcccCCcEEEEecCCHH------HHHHHHHHHhh
Q 021550 199 AKKMLKQDGILCSFSPCIE------QVQRSCESLRL 228 (311)
Q Consensus 199 ~~~~LkpgG~lv~~~~~~~------~~~~~~~~l~~ 228 (311)
+.+.|+|||+++++.|... ....+.+.|.+
T Consensus 381 ~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle 416 (544)
T 3khk_A 381 MLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVE 416 (544)
T ss_dssp HHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHH
T ss_pred HHHHhccCceEEEEecchhhhcCcchHHHHHHHHHh
Confidence 9999999999998887542 23455555544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.2e-10 Score=90.85 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=79.6
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---CCcCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF---PDEFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~---~~~~~ 179 (311)
.+++.+|.+|||+|||. +.+|+++.|++.|+++... + +++..+|+....+ ++
T Consensus 7 ~~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~-~~~~~~d~~~~~~~~~~~--- 61 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----E-GRVSVENIKQLLQSAHKE--- 61 (176)
T ss_dssp TTTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----T-SEEEEEEGGGGGGGCCCS---
T ss_pred ccCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----C-cEEEEechhcCccccCCC---
Confidence 45688999999999986 1389999999999987532 2 8889999986444 44
Q ss_pred CCccEEEec-----C-CChhhHHHHHHhcccCCcEEEEecCCHH---------HHHHHHHHHhh-cC
Q 021550 180 GLADSIFLD-----L-PQPWLAIPSAKKMLKQDGILCSFSPCIE---------QVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~d-----~-~~~~~~l~~~~~~LkpgG~lv~~~~~~~---------~~~~~~~~l~~-~f 230 (311)
++||+|++. . +++..+++++.++|||||++++..|... ...++.+.|++ +|
T Consensus 62 ~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 62 SSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp SCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 789999863 3 6778899999999999999998644221 25667777777 78
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-09 Score=90.89 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=75.1
Q ss_pred CCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCC-cCCCCcc
Q 021550 109 GCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD-EFSGLAD 183 (311)
Q Consensus 109 g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~-~~~~~~D 183 (311)
..+|||+|||. +..+..+++...|.++|+++|.|+.|++.|++++...+. .++.++++|+.+.. +.. ...+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence 36899999997 556677777767889999999999999999998765432 35999999997521 110 0002344
Q ss_pred -----EEEe-----cCCC---hhhHHHHHHhcccCCcEEEEe
Q 021550 184 -----SIFL-----DLPQ---PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 -----~V~~-----d~~~---~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.|++ .+++ +..++..+.+.|+|||+|++.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls 199 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS 199 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence 3443 2344 467999999999999999875
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=97.82 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++ ..+ +++..+|+.+ .++ .||+
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~~p-----~~D~ 249 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------SNN-LTYVGGDMFT-SIP-----NADA 249 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------BTT-EEEEECCTTT-CCC-----CCSE
T ss_pred ccccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------CCC-cEEEeccccC-CCC-----CccE
Confidence 45577899999999999999999986 6789999999 999887764 233 9999999974 443 3999
Q ss_pred EEe-----cCCChh--hHHHHHHhcccC---CcEEEEecC
Q 021550 185 IFL-----DLPQPW--LAIPSAKKMLKQ---DGILCSFSP 214 (311)
Q Consensus 185 V~~-----d~~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 214 (311)
|++ +.+++. .+++++.++|+| ||++++..+
T Consensus 250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 985 355555 789999999999 999988643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-09 Score=92.69 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=72.4
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+..+..++..+++.++++|||+|||+|.++..+++.... .++|+++|+++.+++.++++. ..+++++++|+.+.
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 344556888999999999999999999999999998532 245999999999999999883 23499999999875
Q ss_pred CCCCcCC-C--CccEEEecCCCh
Q 021550 173 GFPDEFS-G--LADSIFLDLPQP 192 (311)
Q Consensus 173 ~~~~~~~-~--~~D~V~~d~~~~ 192 (311)
.+++... . ..+.|+.|+|-.
T Consensus 103 ~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEECCHH
T ss_pred ChhHhcccccCCceEEEEccCcc
Confidence 5543211 0 235678898843
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-09 Score=96.63 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
++.++.+|||+|||+|.++..+++.. |..+++++|+ +.+++.|++ ..+ +++..+|+.. .++ .||+
T Consensus 190 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~~~-----~~D~ 254 (358)
T 1zg3_A 190 VFEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NEN-LNFVGGDMFK-SIP-----SADA 254 (358)
T ss_dssp HHHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSS-EEEEECCTTT-CCC-----CCSE
T ss_pred hccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCC-cEEEeCccCC-CCC-----CceE
Confidence 34567899999999999999999986 6789999999 788876653 234 9999999974 443 4999
Q ss_pred EEe-----cCCChh--hHHHHHHhcccC---CcEEEEec
Q 021550 185 IFL-----DLPQPW--LAIPSAKKMLKQ---DGILCSFS 213 (311)
Q Consensus 185 V~~-----d~~~~~--~~l~~~~~~Lkp---gG~lv~~~ 213 (311)
|++ +.+++. .+|+++.++|+| ||++++..
T Consensus 255 v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 985 355555 889999999999 99998853
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.2e-09 Score=89.65 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=76.4
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..++..+++.++++|||+|||+|.++..+++. +..+|+++|+++.+++.++++ .. .+++++++|+.+..
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~-~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GD-ERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CC-TTEEEECSCTTTCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cC-CCeEEEEcchhhCC
Confidence 445566889999999999999999999999999886 358999999999999999876 22 34999999998755
Q ss_pred CCCcCCCCccEEEecCCChh--hHHHHHHhcc
Q 021550 174 FPDEFSGLADSIFLDLPQPW--LAIPSAKKML 203 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~--~~l~~~~~~L 203 (311)
+++.. +.+ .|+.|+|-.. .++.+++...
T Consensus 90 ~~~~~-~~~-~vv~NlPy~i~~~il~~ll~~~ 119 (249)
T 3ftd_A 90 FCSLG-KEL-KVVGNLPYNVASLIIENTVYNK 119 (249)
T ss_dssp GGGSC-SSE-EEEEECCTTTHHHHHHHHHHTG
T ss_pred hhHcc-CCc-EEEEECchhccHHHHHHHHhcC
Confidence 55421 123 6788888542 3455555433
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=104.93 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V 185 (311)
.+.+|||||||.|.++..+|+. ++.|+|+|.++.+++.|+..+...+..+ +++.++++.+. .+++ +.||+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~~~---~~fD~v 138 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAALEE---GEFDLA 138 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHCCT---TSCSEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhccC---CCccEE
Confidence 4679999999999999999987 5899999999999999999988877555 99999998752 2344 789998
Q ss_pred Ee-----cCCChh--hHHHHHHhcccCCcEEEEe
Q 021550 186 FL-----DLPQPW--LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~ 212 (311)
++ +.+++. ..+..+.+.|+++|..+++
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 75 233333 2244566678887776554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.8e-09 Score=90.56 Aligned_cols=121 Identities=22% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh------CCC-----cEEEEEeCCH---HHHH-----------HHHHHHHhcC---
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV------APT-----GHVYTFDFHE---QRAA-----------SAREDFERTG--- 157 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~------~~~-----~~v~~vD~~~---~~~~-----------~a~~~~~~~g--- 157 (311)
.+++.+|||+|+|+|..++.+++.+ .|. .+++++|..+ +.+. .|++++..+.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 3456799999999999998887765 553 5899999876 4333 5666655410
Q ss_pred -------C---CCcEEEEEecCCCCCCCCcC---CCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 158 -------V---SSFVTVGVRDIQGQGFPDEF---SGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 158 -------~---~~~v~~~~~D~~~~~~~~~~---~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+ ..++++..+|+.+ .++... ...||+||+|...+ .+++..+.+.|+|||+|+.|+...
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~-~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~ 216 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINE-LISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG 216 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHH-HGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH
T ss_pred cchhheeccCCceEEEEEECcHHH-HHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 1 1347788999874 222211 12799999986322 358999999999999999988754
Q ss_pred HHHHHHHHHHhh-cCc
Q 021550 217 EQVQRSCESLRL-NFT 231 (311)
Q Consensus 217 ~~~~~~~~~l~~-~f~ 231 (311)
.+...|.. +|.
T Consensus 217 ----~vrr~L~~aGF~ 228 (257)
T 2qy6_A 217 ----FVRRGLQEAGFT 228 (257)
T ss_dssp ----HHHHHHHHHTEE
T ss_pred ----HHHHHHHHCCCE
Confidence 34445554 665
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-10 Score=97.72 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE-------QRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~-------~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+...+...++.+|||+|||+|..++.+++. .++|+++|+++ ++++.|++|+..+++.++++++.+|+.+
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~- 150 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE- 150 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH-
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH-
Confidence 444456667899999999999999999986 47999999999 9999999988877776669999999864
Q ss_pred CCCCcCC--CCccEEEecCCCh
Q 021550 173 GFPDEFS--GLADSIFLDLPQP 192 (311)
Q Consensus 173 ~~~~~~~--~~~D~V~~d~~~~ 192 (311)
.++.... ++||+|++|++-+
T Consensus 151 ~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHhhhccCCCccEEEECCCCC
Confidence 1111101 4699999998644
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-09 Score=99.12 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=65.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+|.+|||+|||+|..++.+++. ..+|+++|+++.+++.|++|+..+ |+. +++++++|+.+ .++....+.||+
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~i~~i~~Da~~-~L~~~~~~~fDv 166 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTGDFKE-YLPLIKTFHPDY 166 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTC-EEEEEESCGGG-SHHHHHHHCCSE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCC-cEEEEECcHHH-hhhhccCCCceE
Confidence 35899999999999999988876 479999999999999999999988 774 59999999974 222100147999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
|++|+|
T Consensus 167 V~lDPP 172 (410)
T 3ll7_A 167 IYVDPA 172 (410)
T ss_dssp EEECCE
T ss_pred EEECCC
Confidence 999987
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=99.68 Aligned_cols=182 Identities=19% Similarity=0.149 Sum_probs=108.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCccc--c-----cCCCCceEEccCCcEE-EEecCCHHHHhhhh
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW--I-----GKPFGSMVFSNKGGFV-YLLAPTPELWTLVL 85 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~--i-----G~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~ 85 (311)
..+++||+|++.. ...||.|..|+.|....+.- . +..+|.......|++. |+..|........+
T Consensus 80 ~~~~vGDrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~i 151 (398)
T 2dph_A 80 ELMDIGDLVSVPF--------NVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKF 151 (398)
T ss_dssp CSCCTTCEEECCS--------BCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEEC
T ss_pred CCCCCCCEEEEcC--------CCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEEC
Confidence 3589999999865 34699999999888666642 1 0112210001122222 44444331111111
Q ss_pred cCC----------ceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 021550 86 SHR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153 (311)
Q Consensus 86 ~~~----------~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 153 (311)
+.. ..+..+-..+ ..+..+++.+|++||.+|+|. |.++.++++..+ ..+|+++|.+++.++.+++
T Consensus 152 P~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~-- 228 (398)
T 2dph_A 152 GDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD-- 228 (398)
T ss_dssp SSHHHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT--
T ss_pred CCCCChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH--
Confidence 111 1111111111 244678899999999999988 889999999873 3499999999998887763
Q ss_pred HhcCCCCcEEEEEecCCCCCC-C----CcCC-CCccEEEecCCCh-------------hhHHHHHHhcccCCcEEEEecC
Q 021550 154 ERTGVSSFVTVGVRDIQGQGF-P----DEFS-GLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 154 ~~~g~~~~v~~~~~D~~~~~~-~----~~~~-~~~D~V~~d~~~~-------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|. +++ |.....+ . +... ..+|+||-..... ...+..+.+.|+++|+++++..
T Consensus 229 --lGa----~~i--~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 229 --AGF----ETI--DLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp --TTC----EEE--ETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred --cCC----cEE--cCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 453 222 2221111 1 0011 3699988655443 2478999999999999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-09 Score=97.32 Aligned_cols=180 Identities=17% Similarity=0.154 Sum_probs=108.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEEEEecCCHHHHhh--hhcC-
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFVYLLAPTPELWTL--VLSH- 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~--~~~~- 87 (311)
..+++||+|+... ...||.|..|+.|....+. .+|.. ..+.... |+..|....+.. .++.
T Consensus 95 ~~~~vGdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~~~g~~----~~G~~ae--y~~v~~~~~~~~P~~~~~~ 160 (370)
T 4ej6_A 95 RDIAPGARITGDP--------NISCGRCPQCQAGRVNLCRNLRAIGIH----RDGGFAE--YVLVPRKQAFEIPLTLDPV 160 (370)
T ss_dssp CSSCTTCEEEECC--------EECCSSSHHHHTTCGGGCTTCEEBTTT----BCCSSBS--EEEEEGGGEEEECTTSCTT
T ss_pred CCCCCCCEEEECC--------CCCCCCChHHhCcCcccCCCccccCCC----CCCcceE--EEEEchhhEEECCCCCCHH
Confidence 3589999999966 5679999999988866654 23321 1111112 333332211100 0111
Q ss_pred CceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 88 RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 88 ~~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
......+-..+ ..+..+++.+|++||..|+|. |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..++..
T Consensus 161 ~aal~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~ 235 (370)
T 4ej6_A 161 HGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPS 235 (370)
T ss_dssp GGGGHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTT
T ss_pred HHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCC
Confidence 11111122222 245778899999999999987 889999999863 3499999999999888875 4554312111
Q ss_pred EecCCCCCCCC---cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 166 VRDIQGQGFPD---EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 ~~D~~~~~~~~---~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..|..+ .+.+ ...+.+|+||-.... ...+..+.+.|++||+++++..
T Consensus 236 ~~~~~~-~i~~~~~~~~gg~Dvvid~~G~-~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 236 AGDVVE-AIAGPVGLVPGGVDVVIECAGV-AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp SSCHHH-HHHSTTSSSTTCEEEEEECSCC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred CcCHHH-HHHhhhhccCCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEec
Confidence 111110 0000 112579997754443 3478999999999999998753
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-09 Score=91.69 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHhcCCCCC--CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------C-CCCcEEEEEec
Q 021550 99 FVIMYLELVPG--CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------G-VSSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g--~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g-~~~~v~~~~~D 168 (311)
.+...+.+.++ .+|||+|||+|..++.++.+ +++|+++|+++.+++.+++++... + +.++++++.+|
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 46777888888 99999999999999999998 468999999999877777776533 2 32459999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCc
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDG 207 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG 207 (311)
+.+ .++.. .+.||+|++|++-+. .++.+..+.|++.+
T Consensus 154 ~~~-~L~~~-~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLT-ALTDI-TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHH-HSTTC-SSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred HHH-HHHhC-cccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence 874 11111 146999999986432 34556666666544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-09 Score=99.01 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=108.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCccc--ccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW--IGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~--iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
..+++||+|++.. ...|+.|..|+.|...++.- .|..+|... .|++. |+..|........++...
T Consensus 73 ~~~~vGdrV~~~~--------~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~---~G~~aey~~v~~~~~~~~~iP~~~~ 141 (352)
T 3fpc_A 73 KDFKPGDRVVVPA--------ITPDWRTSEVQRGYHQHSGGMLAGWKFSNVK---DGVFGEFFHVNDADMNLAHLPKEIP 141 (352)
T ss_dssp CSCCTTCEEEECS--------BCCCSSSHHHHTTCGGGTTSTTTTBCBTTTB---CCSSBSCEEESSHHHHCEECCTTSC
T ss_pred CcCCCCCEEEEcc--------ccCCCCchhhcCCCcCCccccccccccccCC---CCcccceEEeccccCeEEECCCCCC
Confidence 3599999999865 34588999998887554431 121122211 22222 444444311111222211
Q ss_pred ----eee-ecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 90 ----QIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 90 ----~~~-~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
..+ .+-..+ ..+..+++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..+
T Consensus 142 ~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi 216 (352)
T 3fpc_A 142 LEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGATDII 216 (352)
T ss_dssp HHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCCEEE
T ss_pred HHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCceEE
Confidence 111 111111 345778899999999999987 889999998863 3489999999998888875 3543211
Q ss_pred EEEEecCCCCCCCCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~~~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+....|+.+ .+.+.. ...+|+||-.... ...+..+.+.|+++|+++.+..
T Consensus 217 ~~~~~~~~~-~v~~~t~g~g~D~v~d~~g~-~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 217 NYKNGDIVE-QILKATDGKGVDKVVIAGGD-VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp CGGGSCHHH-HHHHHTTTCCEEEEEECSSC-TTHHHHHHHHEEEEEEEEECCC
T ss_pred cCCCcCHHH-HHHHHcCCCCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEecc
Confidence 111111110 010001 1369998754443 3478999999999999997643
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-08 Score=96.35 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=85.6
Q ss_pred eeeecccHHH-HHHh----c--CCCCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH--HHHHHh---
Q 021550 90 QILYIADISF-VIMY----L--ELVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASA--REDFER--- 155 (311)
Q Consensus 90 ~~~~~~~~~~-i~~~----~--~~~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a--~~~~~~--- 155 (311)
+...|..++. |+.+ + ...++.+|||.|||+|.++..+++.++ ...+++|+|+++.+++.| +.++..
T Consensus 296 qFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L 375 (878)
T 3s1s_A 296 VVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL 375 (878)
T ss_dssp SSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT
T ss_pred eEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 4455666554 4444 2 234688999999999999999998763 136799999999999999 555443
Q ss_pred -cCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecCCCh----------------------------------hhHHHHH
Q 021550 156 -TGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDLPQP----------------------------------WLAIPSA 199 (311)
Q Consensus 156 -~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~~~~----------------------------------~~~l~~~ 199 (311)
++... ..+...|+.... ... ..||+|+.|+|-- ..+++.+
T Consensus 376 lhGi~~-~~I~~dD~L~~~~~~~---~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A 451 (878)
T 3s1s_A 376 VSSNNA-PTITGEDVCSLNPEDF---ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV 451 (878)
T ss_dssp CBTTBC-CEEECCCGGGCCGGGG---TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred hcCCCc-ceEEecchhccccccc---CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence 23322 345555554311 122 6799999998830 1257889
Q ss_pred HhcccCCcEEEEecCCH
Q 021550 200 KKMLKQDGILCSFSPCI 216 (311)
Q Consensus 200 ~~~LkpgG~lv~~~~~~ 216 (311)
.+.|++||+++++.|..
T Consensus 452 l~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 452 TELVQDGTVISAIMPKQ 468 (878)
T ss_dssp HHHSCTTCEEEEEEETH
T ss_pred HHhcCCCcEEEEEEChH
Confidence 99999999999988865
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-09 Score=96.71 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=106.2
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT---- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~---- 89 (311)
.+++||+|++.. ...||.|..|+.|....+.-.. .+|.. ...|++. |+..|.... ..+|...
T Consensus 84 ~~~vGdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~-~~g~~--~~~G~~aey~~v~~~~~--~~iP~~l~~~~ 150 (356)
T 1pl8_A 84 HLKPGDRVAIEP--------GAPRENDEFCKMGRYNLSPSIF-FCATP--PDDGNLCRFYKHNAAFC--YKLPDNVTFEE 150 (356)
T ss_dssp SCCTTCEEEECS--------EECSSCCHHHHTTCGGGCTTCE-ETTBT--TBCCSCBSEEEEEGGGE--EECCTTSCHHH
T ss_pred CCCCCCEEEEec--------cCCCCCChHHHCcCcccCCCcc-ccCcC--CCCCccccEEEeehHHE--EECcCCCCHHH
Confidence 589999999865 4569999999988866654211 01110 0012211 222222111 1111111
Q ss_pred -eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE-
Q 021550 90 -QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG- 165 (311)
Q Consensus 90 -~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~- 165 (311)
..+.+-..+ ..+..+++.+|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..++..
T Consensus 151 aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~ 225 (356)
T 1pl8_A 151 GALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQISK 225 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEECSS
T ss_pred HHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEcCcc
Confidence 111121112 244677899999999999987 889999999863 3489999999998888764 4654212111
Q ss_pred --EecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 166 --VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 --~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.. ..+.+.....+|+||-....+ ..+..+.+.|+++|+++.+..
T Consensus 226 ~~~~~~~-~~i~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 226 ESPQEIA-RKVEGQLGCKPEVTIECTGAE-ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHHHHH-HHHHHHHTSCCSEEEECSCCH-HHHHHHHHHSCTTCEEEECSC
T ss_pred cccchHH-HHHHHHhCCCCCEEEECCCCh-HHHHHHHHHhcCCCEEEEEec
Confidence 01111 001110114699987555443 467889999999999998753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-09 Score=95.48 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=107.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccC-----CCCce-EEccCCcEE-EEecCCHHHHhhhhc
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-----PFGSM-VFSNKGGFV-YLLAPTPELWTLVLS 86 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~-----~~G~~-~~~~~~~~~-~~~~p~~~~~~~~~~ 86 (311)
..+++||+|++.. ...||.|..|+.|....|.-... .+|.. .....|++. |+..|........++
T Consensus 81 ~~~~vGDrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P 152 (398)
T 1kol_A 81 ENLQIGDLVSVPF--------NVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLP 152 (398)
T ss_dssp CSCCTTCEEECCS--------EECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECS
T ss_pred CcCCCCCEEEECC--------cCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECC
Confidence 3589999999854 45699999999888766653210 01110 000112222 444443211111112
Q ss_pred CC----------ceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 021550 87 HR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (311)
Q Consensus 87 ~~----------~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (311)
.. ..+..+-..+ ..+..+++++|++||.+|+|. |.++.++++.++ ..+|+++|.+++.++.+++
T Consensus 153 ~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~--- 228 (398)
T 1kol_A 153 DRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA--- 228 (398)
T ss_dssp CHHHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH---
T ss_pred CCcchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH---
Confidence 11 0111111111 244567899999999999987 889999999873 3489999999999988864
Q ss_pred hcCCCCcEEEEEecCCCCC-C----CCcC-CCCccEEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 155 RTGVSSFVTVGVRDIQGQG-F----PDEF-SGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 155 ~~g~~~~v~~~~~D~~~~~-~----~~~~-~~~~D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.|.+ .+ |..... + .+.. ...+|+||-....+ ...+..+.+.|+++|+++++.
T Consensus 229 -lGa~----~i--~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 229 -QGFE----IA--DLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp -TTCE----EE--ETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred -cCCc----EE--ccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 4542 22 221111 1 1101 13699988554433 247899999999999999875
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-08 Score=85.41 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..++..+.++||..++|..+|.|+.+..+++.+++.++|+++|.++++++.|+ ++ ..+++.++++++...
T Consensus 43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~ 117 (347)
T 3tka_A 43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALG 117 (347)
T ss_dssp CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHH
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHH
Confidence 344455888999999999999999999999999999888999999999999999884 33 235699999988651
Q ss_pred -CCCCc-CCCCccEEEecCC
Q 021550 173 -GFPDE-FSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~-~~~~~D~V~~d~~ 190 (311)
.+... ..+++|.|++|+.
T Consensus 118 ~~L~~~g~~~~vDgILfDLG 137 (347)
T 3tka_A 118 EYVAERDLIGKIDGILLDLG 137 (347)
T ss_dssp HHHHHTTCTTCEEEEEEECS
T ss_pred HHHHhcCCCCcccEEEECCc
Confidence 11110 0135899987654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=95.00 Aligned_cols=97 Identities=24% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCEEEEEcccccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 109 GCLVLESGTGSGSLTTSL---ARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~l---a~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+..|||+|||+|.+.... ++..+...+|+++|.++ +...|++....++..++|+++++|+++..+| +++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence 457999999999995444 44422223799999997 5667888888999999999999999976666 689999
Q ss_pred EecCC-------ChhhHHHHHHhcccCCcEEE
Q 021550 186 FLDLP-------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~-------~~~~~l~~~~~~LkpgG~lv 210 (311)
|+.+- ...+.+....+.|||||.++
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 96432 12256777889999999864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-09 Score=94.09 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=106.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce--
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ-- 90 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~-- 90 (311)
..+++||+|.+... ...||.|..|+.|....+.-.. ..|... .|++. |+..|....+ .++....
T Consensus 77 ~~~~vGdrV~~~~~-------~~~cg~C~~c~~g~~~~c~~~~-~~g~~~---~G~~aey~~v~~~~~~--~iP~~~~~~ 143 (340)
T 3s2e_A 77 SRVKEGDRVGVPWL-------YSACGYCEHCLQGWETLCEKQQ-NTGYSV---NGGYGEYVVADPNYVG--LLPDKVGFV 143 (340)
T ss_dssp CSCCTTCEEEEESE-------EECCSSSHHHHTTCGGGCTTCE-EBTTTB---CCSSBSEEEECTTTSE--ECCTTSCHH
T ss_pred CcCCCCCEEEecCC-------CCCCCCChHHhCcCcccCcccc-ccCCCC---CCcceeEEEechHHEE--ECCCCCCHH
Confidence 35899999976432 4569999999988866554211 112111 12221 3333332211 1121110
Q ss_pred ----eeeccc-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 91 ----ILYIAD-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 91 ----~~~~~~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
+..+-. +-..+...++++|++||..|+|+ |.++.++++.. +.+|+++|.+++.++.+++ .|.+. +
T Consensus 144 ~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---~ 214 (340)
T 3s2e_A 144 EIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEV---A 214 (340)
T ss_dssp HHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSE---E
T ss_pred HhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCE---E
Confidence 001101 11355677899999999999987 99999999986 3599999999999888764 45442 1
Q ss_pred EEecCCCCCCCCc---CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 165 GVRDIQGQGFPDE---FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 165 ~~~D~~~~~~~~~---~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+ |..+..+.+. ..+.+|+||..... ...++.+.+.|+++|+++++.
T Consensus 215 i--~~~~~~~~~~~~~~~g~~d~vid~~g~-~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 215 V--NARDTDPAAWLQKEIGGAHGVLVTAVS-PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp E--ETTTSCHHHHHHHHHSSEEEEEESSCC-HHHHHHHHHHEEEEEEEEECS
T ss_pred E--eCCCcCHHHHHHHhCCCCCEEEEeCCC-HHHHHHHHHHhccCCEEEEeC
Confidence 1 2221111100 11468998766544 347889999999999999864
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.7e-09 Score=90.95 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=68.5
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..+++.+++.++++|||+|||+|.++. ++ . ++..+|+++|+++.+++.+++++... .+++++++|+....
T Consensus 7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCC
Confidence 4445568888899999999999999999999 54 4 22233999999999999999876432 24999999998654
Q ss_pred CCCcC--CCCccEEEecCCC
Q 021550 174 FPDEF--SGLADSIFLDLPQ 191 (311)
Q Consensus 174 ~~~~~--~~~~D~V~~d~~~ 191 (311)
+++.. .+..|.|+.++|-
T Consensus 81 ~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCT
T ss_pred HHHhhcccCCceEEEECCCC
Confidence 44210 0234788888884
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=91.46 Aligned_cols=173 Identities=18% Similarity=0.142 Sum_probs=106.5
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEE-------ccCCcEE-EEecCCHHHHhhhhc
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-------SNKGGFV-YLLAPTPELWTLVLS 86 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~-------~~~~~~~-~~~~p~~~~~~~~~~ 86 (311)
.+++||+|++... ...||.|..|+.|....+. +...|.... ...|++. |+..|....+ .++
T Consensus 79 ~~~vGdrV~~~~~-------~~~Cg~C~~C~~g~~~~c~--~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~--~iP 147 (348)
T 3two_A 79 KFKIGDVVGVGCF-------VNSCKACKPCKEHQEQFCT--KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVI--SVD 147 (348)
T ss_dssp SCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCT--TCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCE--ECC
T ss_pred CCCCCCEEEEeCC-------cCCCCCChhHhCCCcccCc--ccccccccccccccCCcCCccccceEEechhhEE--ECC
Confidence 4899999988432 4569999999999877665 111111100 0012221 3333322111 111
Q ss_pred CCce-----eee-ccc-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 87 HRTQ-----ILY-IAD-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 87 ~~~~-----~~~-~~~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
.... .+. .-. +-..+..+++++|++||.+|+|+ |.++.++++.. +.+|++++.+++.++.+++ .|.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa 221 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGV 221 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTC
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCC
Confidence 1110 000 000 11345566899999999999987 88999999986 3599999999998887764 565
Q ss_pred CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 159 ~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+. + + .|.. .+. ..+|+||-....+ ..++.+.+.|+++|+++++...
T Consensus 222 ~~-v--~-~~~~--~~~----~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 222 KH-F--Y-TDPK--QCK----EELDFIISTIPTH-YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp SE-E--E-SSGG--GCC----SCEEEEEECCCSC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred Ce-e--c-CCHH--HHh----cCCCEEEECCCcH-HHHHHHHHHHhcCCEEEEECCC
Confidence 43 2 2 3321 222 3799987544433 3688999999999999987543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-08 Score=86.30 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHhc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHE--------------------------QRAASAREDFERT 156 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~----~~~~v~~vD~~~--------------------------~~~~~a~~~~~~~ 156 (311)
.....|||+|+..|..++.++..+. ++++|+++|..+ ..++.+++++++.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3456999999999999999887663 368999999642 1467899999999
Q ss_pred CCC-CcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEe
Q 021550 157 GVS-SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 157 g~~-~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+. ++++++.+|+.+ .++....++||+|++|.... ...++.+.+.|+|||+|++-
T Consensus 185 gl~~~~I~li~Gda~e-tL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKD-TLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp TCCSTTEEEEESCHHH-HSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred CCCcCceEEEEeCHHH-HHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEc
Confidence 983 679999999974 33322226899999998642 35789999999999999873
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-08 Score=93.74 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=96.1
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHh
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP------------TGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.+.+.|..+. +|+.++.+.++.+|+|.+||+|.+...+.+++.. ...++|+|+++.+...|+.|+..
T Consensus 197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l 276 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL 276 (530)
T ss_dssp CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence 3566677765 5888999999999999999999999888776522 24699999999999999999988
Q ss_pred cCCCCcEEEEEecCCCCCCCCc-CCCCccEEEecCCCh---------------------hhHHHHHHhccc-------CC
Q 021550 156 TGVSSFVTVGVRDIQGQGFPDE-FSGLADSIFLDLPQP---------------------WLAIPSAKKMLK-------QD 206 (311)
Q Consensus 156 ~g~~~~v~~~~~D~~~~~~~~~-~~~~~D~V~~d~~~~---------------------~~~l~~~~~~Lk-------pg 206 (311)
+|... .++..+|....++... ....||+|+.|+|-. ..+++.+.+.|+ +|
T Consensus 277 hg~~~-~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g 355 (530)
T 3ufb_A 277 HGLEY-PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 355 (530)
T ss_dssp HTCSC-CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred cCCcc-ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence 88865 5677788764332211 114799999998821 246778888776 79
Q ss_pred cEEEEecCC
Q 021550 207 GILCSFSPC 215 (311)
Q Consensus 207 G~lv~~~~~ 215 (311)
|+++++.|.
T Consensus 356 Gr~avVlP~ 364 (530)
T 3ufb_A 356 GRAAVVVPN 364 (530)
T ss_dssp CEEEEEEEH
T ss_pred ceEEEEecc
Confidence 999988774
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-09 Score=95.90 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=105.1
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCC-----
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHR----- 88 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~----- 88 (311)
..+++||+|++.. ...||.|..|+.|....++-.. .+|....+.... |+..|....+ .++..
T Consensus 117 ~~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~-~~g~~~~G~~ae--y~~v~~~~~~--~iP~~~~~~~ 183 (404)
T 3ip1_A 117 KRFEIGEPVCAEE--------MLWCGHCRPCAEGFPNHCENLN-ELGFNVDGAFAE--YVKVDAKYAW--SLRELEGVYE 183 (404)
T ss_dssp EECCTTCEEEECS--------EECCSCSHHHHTTCGGGCTTCE-EBTTTBCCSSBS--EEEEEGGGEE--ECGGGBTTBC
T ss_pred CCCCCCCEEEECC--------ccCCCCCHHHHCcCcccCcccc-ccCCCCCCCCcc--eEEechHHeE--eccccccccc
Confidence 3599999999976 4569999999988866654221 112211111112 3333322111 11111
Q ss_pred -------ceeeecccHHH-HHH-h-cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 021550 89 -------TQILYIADISF-VIM-Y-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157 (311)
Q Consensus 89 -------~~~~~~~~~~~-i~~-~-~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g 157 (311)
..+..+-..++ .+. . +++.+|++||.+|+|. |.++.++++..+ ..+|+++|.+++.++.+++ .|
T Consensus 184 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lG 258 (404)
T 3ip1_A 184 GDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----LG 258 (404)
T ss_dssp THHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HT
T ss_pred cccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cC
Confidence 01111111111 221 2 3689999999999987 889999999863 4499999999999988875 35
Q ss_pred CCCcEEEEEecCCCCCCC----CcC-CCCccEEEecCCChhhHHHHHHhcc----cCCcEEEEecC
Q 021550 158 VSSFVTVGVRDIQGQGFP----DEF-SGLADSIFLDLPQPWLAIPSAKKML----KQDGILCSFSP 214 (311)
Q Consensus 158 ~~~~v~~~~~D~~~~~~~----~~~-~~~~D~V~~d~~~~~~~l~~~~~~L----kpgG~lv~~~~ 214 (311)
.+. ++ |.....+. +.. ...+|+||-....+...+..+.+.| +++|+++++..
T Consensus 259 a~~---vi--~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 259 ADH---VI--DPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CSE---EE--CTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCE---EE--cCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 432 11 22111110 001 1369998876666644566666666 99999998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.3e-09 Score=94.14 Aligned_cols=177 Identities=19% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHhhhhcC--
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-- 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~-- 87 (311)
..+++||+|++.. ...||.|..|+.|....+. +.|... ..|.+. |+..|....+ .++.
T Consensus 92 ~~~~vGdrV~~~~--------~~~cg~C~~c~~g~~~~c~~~~~~g~~~------~~G~~aey~~v~~~~~~--~iP~~s 155 (363)
T 3m6i_A 92 KSIKVGDRVAIEP--------QVICNACEPCLTGRYNGCERVDFLSTPP------VPGLLRRYVNHPAVWCH--KIGNMS 155 (363)
T ss_dssp CSCCTTCEEEECC--------EECCSCSHHHHTTCGGGCTTCEETTSTT------SCCSCBSEEEEEGGGEE--ECTTCC
T ss_pred CCCCCCCEEEEec--------ccCCCCCHHHHCcCcccCCCccccCCCC------CCccceeEEEEehhhEE--ECCCCC
Confidence 3589999999866 4579999999888765554 223210 112111 2222221111 1111
Q ss_pred --CceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 88 --~~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
....+.+-..+ ..+..+++++|++||.+|+|. |.++.++++..+ ...|+++|.+++.++.+++. . +..+.
T Consensus 156 ~~~aa~~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~----~~~~~ 229 (363)
T 3m6i_A 156 YENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-C----PEVVT 229 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-C----TTCEE
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-c----hhccc
Confidence 00011111111 245778899999999999987 889999999863 34599999999999998864 2 12133
Q ss_pred EEEe-----cCCCCCCCCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGVR-----DIQGQGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~~-----D~~~~~~~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.... |+.+ .+.+. ....+|+||-.... ...+..+.+.|+++|+++++..
T Consensus 230 ~~~~~~~~~~~~~-~v~~~t~g~g~Dvvid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 230 HKVERLSAEESAK-KIVESFGGIEPAVALECTGV-ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EECCSCCHHHHHH-HHHHHTSSCCCSEEEECSCC-HHHHHHHHHHSCTTCEEEECCC
T ss_pred ccccccchHHHHH-HHHHHhCCCCCCEEEECCCC-hHHHHHHHHHhcCCCEEEEEcc
Confidence 3211 1110 01000 11579997755443 3478899999999999998743
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-08 Score=93.96 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=73.7
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC--CCCC--
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ--GQGF-- 174 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~--~~~~-- 174 (311)
+...+++.+|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.|++ .|.+. ++ |.. ...+
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~---vi--~~~~~~~~~~~ 254 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNE---FV--NPKDHDKPIQE 254 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCE---EE--CGGGCSSCHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcE---EE--ccccCchhHHH
Confidence 34667899999999999987 899999999873 3589999999999887763 46543 11 221 1111
Q ss_pred --CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 175 --PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 175 --~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+...+.+|+||-.... ...++.+.+.|++| |+++++..
T Consensus 255 ~i~~~~~gg~D~vid~~g~-~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 255 VIVDLTDGGVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHHTTSCBSEEEECSCC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHhcCCCCCEEEECCCC-HHHHHHHHHHhhccCCEEEEEcc
Confidence 11112479998755544 34789999999997 99998653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=92.30 Aligned_cols=179 Identities=19% Similarity=0.155 Sum_probs=103.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecC-CHHHHhh-hhcCC-c
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAP-TPELWTL-VLSHR-T 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p-~~~~~~~-~~~~~-~ 89 (311)
..+++||+|+... ...||.|..|+.|...++.-. ..+|.. ..|.+. |+..| ....+.. .++.. .
T Consensus 78 ~~~~~GdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~-~~~G~~---~~G~~aey~~v~~~~~~~~i~~l~~~~a 145 (344)
T 2h6e_A 78 AKVKKGDNVVVYA--------TWGDLTCRYCREGKFNICKNQ-IIPGQT---TNGGFSEYMLVKSSRWLVKLNSLSPVEA 145 (344)
T ss_dssp CCCCTTCEEEECS--------CBCCSCSTTGGGTCGGGCTTC-BCBTTT---BCCSSBSEEEESCGGGEEEESSSCHHHH
T ss_pred CCCCCCCEEEECC--------CCCCCCChhhhCCCcccCCCc-cccccc---cCCcceeeEEecCcccEEEeCCCCHHHh
Confidence 4689999996554 335899999998886665421 112221 112221 33344 2211110 00000 0
Q ss_pred e-eeeccc-HHHHHHhc-----CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 90 Q-ILYIAD-ISFVIMYL-----ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 90 ~-~~~~~~-~~~i~~~~-----~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
. +...-. +-..+..+ ++ +|++||.+|+|. |.++.++++...++.+|++++.+++.++.+++ .|.+..
T Consensus 146 a~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v 220 (344)
T 2h6e_A 146 APLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADYV 220 (344)
T ss_dssp GGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSEE
T ss_pred hhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCEE
Confidence 0 000000 01233444 78 999999999987 88899999987223689999999999888875 354321
Q ss_pred EEEEE-ecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 162 VTVGV-RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 162 v~~~~-~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++... .|.. ..+.. ...+|+||-.... ...++.+.+.|+++|+++.+.
T Consensus 221 i~~~~~~~~~-~~~~~--g~g~D~vid~~g~-~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 221 SEMKDAESLI-NKLTD--GLGASIAIDLVGT-EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp ECHHHHHHHH-HHHHT--TCCEEEEEESSCC-HHHHHHHHHHEEEEEEEEECC
T ss_pred eccccchHHH-HHhhc--CCCccEEEECCCC-hHHHHHHHHHhhcCCEEEEeC
Confidence 11111 1111 01111 1379998765554 346889999999999999864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=92.09 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=104.8
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
.+++||+|++.. ...||.|..|+.|....+. +.|... ..|.+. |+..|.... ..+|...
T Consensus 81 ~~~vGdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~~~g~~~------~~G~~aey~~v~~~~~--~~iP~~~~ 144 (352)
T 1e3j_A 81 HLKKGDRVAVEP--------GVPCRRCQFCKEGKYNLCPDLTFCATPP------DDGNLARYYVHAADFC--HKLPDNVS 144 (352)
T ss_dssp SCCTTCEEEECC--------EECCSSSHHHHTTCGGGCTTCEETTBTT------BCCSCBSEEEEEGGGE--EECCTTSC
T ss_pred CCCCCCEEEEcC--------cCCCCCChhhhCcCcccCCCCcccCcCC------CCccceeEEEeChHHe--EECcCCCC
Confidence 589999999865 4569999999988765554 233210 012111 222222111 1111110
Q ss_pred ----eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 90 ----QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 90 ----~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
..+.|-..+ ..+..+++++|++||.+|+|. |.++.++++.. +.+|++++.+++.++.+++ .|.+..++
T Consensus 145 ~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~ 218 (352)
T 1e3j_A 145 LEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLV 218 (352)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEE
T ss_pred HHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEc
Confidence 111122112 244677899999999999987 88889999986 3569999999999888764 45542111
Q ss_pred EEE-ecCCCCCCCCcC----CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGV-RDIQGQGFPDEF----SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~-~D~~~~~~~~~~----~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... .|.. ..+.+.. ...+|+||-.... ...++.+.+.|+++|+++.+..
T Consensus 219 ~~~~~~~~-~~i~~~~~~~~g~g~D~vid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 219 VDPAKEEE-SSIIERIRSAIGDLPNVTIDCSGN-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CCTTTSCH-HHHHHHHHHHSSSCCSEEEECSCC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CcccccHH-HHHHHHhccccCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 110 1110 0011001 1469998765544 3467889999999999998753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=91.54 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..++....|+. ..+.+...+
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~-~~~~~~~~g 257 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPV-AAIKEITDG 257 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHH-HHHHHHTTS
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHH-HHHHHhcCC
Confidence 567899999999999987 889999999873 3479999999999888865 354321111001111 001111114
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+||-.... ...++.+.+.|+++|+++++..
T Consensus 258 g~D~vid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 258 GVNFALESTGS-PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp CEEEEEECSCC-HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCCC-HHHHHHHHHHHhcCCEEEEeCC
Confidence 69997755443 3478899999999999998753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=91.40 Aligned_cols=178 Identities=19% Similarity=0.171 Sum_probs=105.1
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCC-------CceEEccCCcEEEEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF-------GSMVFSNKGGFVYLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~-------G~~~~~~~~~~~~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|++... ...||.|..|+.|....+.-....+ |....+.... |+..|.... ..+|.
T Consensus 97 ~~~vGDrV~~~~~-------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~ae--yv~v~~~~~--~~~P~ 165 (369)
T 1uuf_A 97 KYAPGDLVGVGCI-------VDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQ--QIVVHERYV--LRIRH 165 (369)
T ss_dssp SCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBS--EEEEEGGGC--EECCS
T ss_pred CCCCCCEEEEccC-------CCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccc--eEEEcchhE--EECCC
Confidence 5899999998542 3459999999999866665220001 2111111112 333332211 11111
Q ss_pred C-c-----e-eeecccH-HHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 R-T-----Q-ILYIADI-SFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 ~-~-----~-~~~~~~~-~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
. . . +..+-.. -..+..+++.+|++||.+|+|+ |.++.++++.. +.+|++++.+++.++.+++ .|.
T Consensus 166 ~~ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa 239 (369)
T 1uuf_A 166 PQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGA 239 (369)
T ss_dssp CGGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTC
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC
Confidence 1 1 0 0001111 1244556899999999999987 88899999986 4679999999999888875 354
Q ss_pred CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 159 ~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+..++....|.. ..+. +.+|+||-....+ ..++.+.+.|+++|+++.+...
T Consensus 240 ~~vi~~~~~~~~-~~~~----~g~Dvvid~~g~~-~~~~~~~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 240 DEVVNSRNADEM-AAHL----KSFDFILNTVAAP-HNLDDFTTLLKRDGTMTLVGAP 290 (369)
T ss_dssp SEEEETTCHHHH-HTTT----TCEEEEEECCSSC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred cEEeccccHHHH-HHhh----cCCCEEEECCCCH-HHHHHHHHHhccCCEEEEeccC
Confidence 321111111111 1111 4699987554432 3578899999999999987654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-08 Score=84.55 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=85.2
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.+...++++.+|||+|||+|.++..++... +...+.++|+..+........ ...+. + +.....++....++.
T Consensus 66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g~-~-ii~~~~~~dv~~l~~--- 138 (277)
T 3evf_A 66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLGW-N-IITFKDKTDIHRLEP--- 138 (277)
T ss_dssp HHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTTG-G-GEEEECSCCTTTSCC---
T ss_pred HHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCCC-C-eEEEeccceehhcCC---
Confidence 4445557889999999999999999888763 356788888874431000000 00011 2 444555553334444
Q ss_pred CCccEEEecCCCh----h-------hHHHHHHhcccCC-cEEEE--ecCCHHHHHHHHHHHhhcCceee
Q 021550 180 GLADSIFLDLPQP----W-------LAIPSAKKMLKQD-GILCS--FSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 180 ~~~D~V~~d~~~~----~-------~~l~~~~~~Lkpg-G~lv~--~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
+.||+|++|+... + .+|+.+.++|+|| |.|++ |.|+.....++...|+..|..+.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~ 207 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTV 207 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEE
Confidence 7899999987322 2 2457778999999 99997 44447888889999988777654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-08 Score=91.73 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=105.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccc------cCC-CC--------ceEEc--cCCcEE-EEec
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI------GKP-FG--------SMVFS--NKGGFV-YLLA 75 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~i------G~~-~G--------~~~~~--~~~~~~-~~~~ 75 (311)
..+++||+|++.. ...||.|..|+.|....+.-. |.. .| ..+.. ..|++. |+..
T Consensus 82 ~~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v 153 (373)
T 1p0f_A 82 TCVKPGDKVIPLF--------VPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVV 153 (373)
T ss_dssp CSCCTTCEEEECS--------SCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEE
T ss_pred CccCCCCEEEECC--------CCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEE
Confidence 3589999999865 335999999998887666422 110 00 00000 012221 3333
Q ss_pred CCHHHHh--hhhcCCceeee-cccHHH--HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 021550 76 PTPELWT--LVLSHRTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASA 149 (311)
Q Consensus 76 p~~~~~~--~~~~~~~~~~~-~~~~~~--i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 149 (311)
|....+. ..++.....+. +-..++ +...+++++|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+
T Consensus 154 ~~~~~~~iP~~l~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a 232 (373)
T 1p0f_A 154 ADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKA 232 (373)
T ss_dssp ETTSEEEECTTCCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHH
T ss_pred chhhEEECCCCCChhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH
Confidence 3221110 00111111111 111111 33567889999999999987 889999999873 34899999999988887
Q ss_pred HHHHHhcCCCCcEEEEE--ecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 150 REDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 150 ~~~~~~~g~~~~v~~~~--~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
++ .|.+..++... .|+. ..+.+...+.+|+||-.... ...+..+.+.|+++ |+++.+..
T Consensus 233 ~~----lGa~~vi~~~~~~~~~~-~~i~~~t~gg~Dvvid~~g~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 233 IE----LGATECLNPKDYDKPIY-EVICEKTNGGVDYAVECAGR-IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HH----TTCSEEECGGGCSSCHH-HHHHHHTTSCBSEEEECSCC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HH----cCCcEEEecccccchHH-HHHHHHhCCCCCEEEECCCC-HHHHHHHHHHHhcCCCEEEEEcc
Confidence 64 46542111100 0110 00111111479997755443 34788999999999 99998753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-08 Score=90.22 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC---
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF--- 174 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~--- 174 (311)
...+++.+|++||.+|+|. |.++.++++.++ ..+|+++|.+++.++.+++ .|.+. ++ |..+ ..+
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~---vi--~~~~~~~~~~~~ 257 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATD---CL--NPRELDKPVQDV 257 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE---EE--CGGGCSSCHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCcE---EE--ccccccchHHHH
Confidence 3567889999999999987 889999999863 3489999999998888764 45532 11 2211 111
Q ss_pred -CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 175 -PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 175 -~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+...+.+|+||-.... ...++.+.+.|+++ |+++++..
T Consensus 258 v~~~~~~g~Dvvid~~G~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 258 ITELTAGGVDYSLDCAGT-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHHTSCBSEEEESSCC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHhCCCccEEEECCCC-HHHHHHHHHHhhcCCCEEEEECC
Confidence 11111479997755443 34788999999999 99998653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-08 Score=92.26 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=103.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCC------CceEEccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF------GSMVFSNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~------G~~~~~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|.+... ...||.|..|+.|....+.-....+ |... .|++. |+..|.... ..+|.
T Consensus 84 ~~~~GdrV~~~~~-------~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~---~G~~aey~~v~~~~~--~~iP~ 151 (360)
T 1piw_A 84 GLKVGQRVGVGAQ-------VFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVS---QGGYANYVRVHEHFV--VPIPE 151 (360)
T ss_dssp SCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBC---CCSSBSEEEEEGGGE--EECCT
T ss_pred CCCCCCEEEEecC-------CCCCCCChhhcCCCcccCcchhhccccccCCCccC---CCcceeEEEEchhhe--EECCC
Confidence 6899999977432 4569999999999877665220011 2111 12221 333332211 11111
Q ss_pred Cc-----eeee-cccH-HHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 021550 88 RT-----QILY-IADI-SFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159 (311)
Q Consensus 88 ~~-----~~~~-~~~~-~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~ 159 (311)
.. ..+. +-.. -..+..+++++|++||.+|+|. |.++.++++..+ .+|++++.+++.++.+++ .|.+
T Consensus 152 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~ 225 (360)
T 1piw_A 152 NIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGAD 225 (360)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCS
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCC
Confidence 11 0111 1111 1244557899999999999986 888999999873 589999999998888775 3543
Q ss_pred CcEEEEEecCCCC-CCCCcCCCCccEEEecCCCh-hhHHHHHHhcccCCcEEEEec
Q 021550 160 SFVTVGVRDIQGQ-GFPDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 160 ~~v~~~~~D~~~~-~~~~~~~~~~D~V~~d~~~~-~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ++ |..+. .+.+...+.+|+||-..... ...++.+.+.|+++|+++.+.
T Consensus 226 ~---v~--~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 226 H---YI--ATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp E---EE--EGGGTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred E---EE--cCcCchHHHHHhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence 2 12 11111 11110114699988655430 235678889999999998764
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=94.56 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCEEEEEcccccHHHHHHHHHh---C---------CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC-
Q 021550 109 GCLVLESGTGSGSLTTSLARAV---A---------PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP- 175 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~---~---------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~- 175 (311)
+..|||+|||+|.++...+++. + ...+|+++|.++.+...++.... +++.++|+++.+|+++..++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 4589999999999975433332 1 23499999999987766665544 78888899999999874442
Q ss_pred -CcCCCCccEEEecCCC-------hhhHHHHHHhcccCCcEEE
Q 021550 176 -DEFSGLADSIFLDLPQ-------PWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 176 -~~~~~~~D~V~~d~~~-------~~~~l~~~~~~LkpgG~lv 210 (311)
....+++|+||+.+-. ..+.|..+.+.|+|||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 0001689999975542 1257777789999999864
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-08 Score=83.43 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=78.5
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHH--hCC-CcEEEEEeC--CHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARA--VAP-TGHVYTFDF--HEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPD 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~--~~~-~~~v~~vD~--~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~ 176 (311)
..-++||.+|||+||++|+++..+++. ++. .+.++++|+ .|-.. ...|+ +.+.+.++ |+.+ ++.
T Consensus 68 K~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~G~Df~~--~~~ 137 (269)
T 2px2_A 68 RRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKSGVDVFY--KPS 137 (269)
T ss_dssp TTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEECSCCGGG--SCC
T ss_pred cCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeeccCCccC--CCC
Confidence 334789999999999999999999887 422 245555562 11100 00121 22466657 9874 333
Q ss_pred cCCCCccEEEecCCCh-----------hhHHHHHHhcccCCc-EEEE--ecCCHHHHHHHHHHHhhcCceee
Q 021550 177 EFSGLADSIFLDLPQP-----------WLAIPSAKKMLKQDG-ILCS--FSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~-----------~~~l~~~~~~LkpgG-~lv~--~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
..+|+|++|+... ..+|.-+.+.|+||| .|++ |.+..+.+.++++.++..|....
T Consensus 138 ---~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk 206 (269)
T 2px2_A 138 ---EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL 206 (269)
T ss_dssp ---CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE
T ss_pred ---CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE
Confidence 5799999987421 125777789999999 8876 44444777787888887776543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=91.76 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=95.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc---
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT--- 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~--- 89 (311)
..+++||+|++.. ...||.|..|+.|...+++-.. .+|.. ..|++. |+..|.... ..+|...
T Consensus 81 ~~~~vGdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~-~~g~~---~~G~~aey~~v~~~~~--~~iP~~~~~~ 146 (348)
T 2d8a_A 81 EGIEVGDYVSVET--------HIVCGKCYACRRGQYHVCQNTK-IFGVD---TDGVFAEYAVVPAQNI--WKNPKSIPPE 146 (348)
T ss_dssp CSCCTTCEEEECC--------EECCSCCC------------CE-ETTTS---SCCSSBSEEEEEGGGE--EECCTTSCHH
T ss_pred CcCCCCCEEEEcC--------CCCCCCChhhhCcCcccCCCCC-eecCC---CCCcCcceEEeChHHe--EECCCCCCHH
Confidence 3589999999865 4569999999988866654211 01111 112211 222222111 1111111
Q ss_pred --eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 90 --QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 90 --~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
..+.+-..+ ..+..+++ +|++||.+|+|. |.++..+++..+ ..+|++++.+++.++.+++ .|.+. +
T Consensus 147 ~aa~~~~~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----~Ga~~---~- 216 (348)
T 2d8a_A 147 YATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAKK----VGADY---V- 216 (348)
T ss_dssp HHTTHHHHHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHHH----HTCSE---E-
T ss_pred HHHhhhHHHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCE---E-
Confidence 111121111 23456778 999999999976 888889998863 3389999999998888764 35432 1
Q ss_pred EecCCCCCCC----CcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 166 VRDIQGQGFP----DEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 ~~D~~~~~~~----~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|.....+. +.. ...+|+||-.... ...++.+.+.|+++|+++.+..
T Consensus 217 -~~~~~~~~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 217 -INPFEEDVVKEVMDITDGNGVDVFLEFSGA-PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp -ECTTTSCHHHHHHHHTTTSCEEEEEECSCC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred -ECCCCcCHHHHHHHHcCCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 122211110 001 1369998765554 3478889999999999998754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=83.58 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=88.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC---C----CCcEEEEEecCCCCCCCC--c
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---V----SSFVTVGVRDIQGQGFPD--E 177 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~----~~~v~~~~~D~~~~~~~~--~ 177 (311)
.+..+||.+|.|.|..+..+++. +..+|+.+|+++..++.|++.+.... . .++++++.+|+.. .+.. .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~-fl~~~~~ 280 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP-VLKRYAK 280 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH-HHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH-HHHhhhh
Confidence 45689999999999999999886 45899999999999999999764311 1 2358899999863 1110 0
Q ss_pred CCCCccEEEecCCCh---------------hhHHHHHHhcccCCcEEEEec--CC-HHHHHHHHHHHhhcCceee
Q 021550 178 FSGLADSIFLDLPQP---------------WLAIPSAKKMLKQDGILCSFS--PC-IEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------~~~l~~~~~~LkpgG~lv~~~--~~-~~~~~~~~~~l~~~f~~~~ 234 (311)
..+.||+||+|.+++ .++++.+.+.|+|||.++.-+ +. .+....+.+.+++-|..+.
T Consensus 281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~ 355 (381)
T 3c6k_A 281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVE 355 (381)
T ss_dssp HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEE
T ss_pred ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcce
Confidence 115799999986431 256788999999999998642 32 2344555566655565554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-08 Score=89.92 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=105.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccc------cCC-CCc--------eEEc--cCCcEE-EEec
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI------GKP-FGS--------MVFS--NKGGFV-YLLA 75 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~i------G~~-~G~--------~~~~--~~~~~~-~~~~ 75 (311)
..+++||+|++.. ...||.|..|+.|....+.-. |.. .|. .+.. ..|++. |+..
T Consensus 82 ~~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v 153 (374)
T 1cdo_A 82 TEFQPGEKVIPLF--------ISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVV 153 (374)
T ss_dssp CSCCTTCEEEECS--------SCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEE
T ss_pred ccCCCCCEEEeCC--------CCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEE
Confidence 3589999999865 335999999999887666422 110 010 0000 112221 3333
Q ss_pred CCHHHHhhhhcCCc-----eeee-cccHHH--HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 021550 76 PTPELWTLVLSHRT-----QILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA 146 (311)
Q Consensus 76 p~~~~~~~~~~~~~-----~~~~-~~~~~~--i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~ 146 (311)
|.... ..+|... ..+. +-..++ +...+++.+|++||.+|+|. |.++.++++..+ ..+|+++|.+++.+
T Consensus 154 ~~~~~--~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~ 230 (374)
T 1cdo_A 154 NQIAV--AKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKF 230 (374)
T ss_dssp EGGGE--EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGH
T ss_pred chhhe--EECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHH
Confidence 32211 1112111 1111 111111 33567889999999999987 888999999863 34899999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCC--CCCC----CcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 147 ASAREDFERTGVSSFVTVGVRDIQG--QGFP----DEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 147 ~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~----~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
+.+++ .|.+. ++ |..+ ..+. +...+.+|+||-.... ...+..+.+.|+++ |+++++..
T Consensus 231 ~~~~~----lGa~~---vi--~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 231 EKAKV----FGATD---FV--NPNDHSEPISQVLSKMTNGGVDFSLECVGN-VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHH----TTCCE---EE--CGGGCSSCHHHHHHHHHTSCBSEEEECSCC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHH----hCCce---EE--eccccchhHHHHHHHHhCCCCCEEEECCCC-HHHHHHHHHHhhcCCcEEEEEcC
Confidence 88764 45532 11 2211 1111 1111469998755544 34788999999999 99998753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-08 Score=89.95 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC---
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF--- 174 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~--- 174 (311)
...+++.+|++||.+|+|. |.++.++++..+ ..+|++++.+++.++.+++ .|.+. ++ |..+ ..+
T Consensus 184 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~---vi--~~~~~~~~~~~~ 253 (374)
T 2jhf_A 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGATE---CV--NPQDYKKPIQEV 253 (374)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE---EE--CGGGCSSCHHHH
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCce---Ee--cccccchhHHHH
Confidence 3567889999999999987 888899999863 3489999999998888764 45432 11 2211 111
Q ss_pred -CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEec
Q 021550 175 -PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS 213 (311)
Q Consensus 175 -~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~ 213 (311)
.+...+.+|+||-.... ...+..+.+.|+++ |+++++.
T Consensus 254 ~~~~~~~g~D~vid~~g~-~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 254 LTEMSNGGVDFSFEVIGR-LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHTTSCBSEEEECSCC-HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHHHhCCCCcEEEECCCC-HHHHHHHHHHhhcCCcEEEEec
Confidence 11111479998755544 34788999999999 9999875
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-08 Score=91.85 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=104.3
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecc-cceeeCcc---cccCCC-CceEEccCCcEE-EEec-CCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNR-FGAFKHSD---WIGKPF-GSMVFSNKGGFV-YLLA-PTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~-~G~~~~~~---~iG~~~-G~~~~~~~~~~~-~~~~-p~~~~~~~~~~~ 87 (311)
.+++||+|++.. ...||.|..|+ .|....+. .+|... ...-....|++. |+.. |....+ .+|.
T Consensus 97 ~~~vGdrV~~~~--------~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~--~iP~ 166 (380)
T 1vj0_A 97 LLKPGDLIVWNR--------GITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVL--KVSE 166 (380)
T ss_dssp BCCTTCEEEECS--------EECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEE--EECT
T ss_pred CCCCCCEEEEcc--------cCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEE--ECCC
Confidence 699999999866 45699999998 77655543 223100 000000011111 2233 221111 1111
Q ss_pred C------ceeeecccHH-HHHHhcC-CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 R------TQILYIADIS-FVIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 ~------~~~~~~~~~~-~i~~~~~-~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
. ...+.+-..+ ..+..++ +++|++||..|+|. |.++.++++..+ ..+|++++.+++.++.+++ .|.
T Consensus 167 ~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa 241 (380)
T 1vj0_A 167 KDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGA 241 (380)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTC
T ss_pred CCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCC
Confidence 1 1111111111 2446678 89999999999887 888999999862 3599999999998888764 465
Q ss_pred CCcEEEE---EecCCCCCCCCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 159 SSFVTVG---VRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 159 ~~~v~~~---~~D~~~~~~~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+..+... ..|+.+ .+.+.. ...+|+||-.... ...+..+.+.|+++|+++.+..
T Consensus 242 ~~vi~~~~~~~~~~~~-~v~~~~~g~g~Dvvid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 242 DLTLNRRETSVEERRK-AIMDITHGRGADFILEATGD-SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp SEEEETTTSCHHHHHH-HHHHHTTTSCEEEEEECSSC-TTHHHHHHHHEEEEEEEEECCC
T ss_pred cEEEeccccCcchHHH-HHHHHhCCCCCcEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 3211111 111110 011001 1369998755443 2368889999999999998754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-08 Score=92.73 Aligned_cols=180 Identities=21% Similarity=0.246 Sum_probs=105.5
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc-cc--c-CCCCceEEccCCcEE-EEecC-CHHHHhhhhcC
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD-WI--G-KPFGSMVFSNKGGFV-YLLAP-TPELWTLVLSH 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~-~i--G-~~~G~~~~~~~~~~~-~~~~p-~~~~~~~~~~~ 87 (311)
..+++||+|++.. ...||.|..|+.|....++ .. + ...|... .|.+. |+..| .... ..++.
T Consensus 76 ~~~~vGdrV~~~~--------~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~---~G~~aey~~v~~~~~~--~~~p~ 142 (345)
T 3jv7_A 76 TGFGVGDAVAVYG--------PWGCGACHACARGRENYCTRAADLGITPPGLGS---PGSMAEYMIVDSARHL--VPIGD 142 (345)
T ss_dssp CSCCTTCEEEECC--------SCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTB---CCSSBSEEEESCGGGE--EECTT
T ss_pred CCCCCCCEEEEec--------CCCCCCChHHHCcCcCcCccccccccccCCcCC---CceeeEEEEecchhce--EeCCC
Confidence 3589999999976 3459999999988866662 10 0 0011111 12211 33333 1111 01111
Q ss_pred -----CceeeecccHH-HHHHhc--CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 -----RTQILYIADIS-FVIMYL--ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 -----~~~~~~~~~~~-~i~~~~--~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
...+..+-..+ ..+... .+.+|++||.+|+|. |.++.++++..+ ..+|+++|.+++.++.+++ .|.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa 217 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGA 217 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTC
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC
Confidence 00011111111 244443 789999999999987 889999999874 5799999999999988865 465
Q ss_pred CCcEEEEEecCCCCCCCCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 159 SSFVTVGVRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 159 ~~~v~~~~~D~~~~~~~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+..+.. ..|.. ..+.+.. ...+|+||-.... ...++.+.+.|+++|+++++..
T Consensus 218 ~~~i~~-~~~~~-~~v~~~t~g~g~d~v~d~~G~-~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 218 DAAVKS-GAGAA-DAIRELTGGQGATAVFDFVGA-QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp SEEEEC-STTHH-HHHHHHHGGGCEEEEEESSCC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred CEEEcC-CCcHH-HHHHHHhCCCCCeEEEECCCC-HHHHHHHHHHHhcCCEEEEECC
Confidence 431111 00111 0010001 1379997755444 3478999999999999998753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-08 Score=83.59 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=84.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.+...+.++.+|||+|||+|.++..++... +...|+++|+...+...+... ...+. + +.....++....++.
T Consensus 82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g~-~-ii~~~~~~dv~~l~~--- 154 (282)
T 3gcz_A 82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLGW-N-LIRFKDKTDVFNMEV--- 154 (282)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTTG-G-GEEEECSCCGGGSCC---
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCCC-c-eEEeeCCcchhhcCC---
Confidence 4444567899999999999999999888764 467899999976532211100 00111 2 223333222122444
Q ss_pred CCccEEEecCCCh----h-------hHHHHHHhcccCC--cEEEEe--cCCHHHHHHHHHHHhhcCceee
Q 021550 180 GLADSIFLDLPQP----W-------LAIPSAKKMLKQD--GILCSF--SPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 180 ~~~D~V~~d~~~~----~-------~~l~~~~~~Lkpg--G~lv~~--~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
..+|+|++|+... + .+|.-+.++|+|| |.|++= .|+.....++...|+..|..+.
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~ 224 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGL 224 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEE
Confidence 7899999987532 1 3466778999999 999974 4447888889999988777654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-08 Score=88.41 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=72.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC---
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF--- 174 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~--- 174 (311)
...+++++|++||.+|+|. |.++.++++..+ ..+|++++.+++.++.+++ .|.+. ++ |..+ ..+
T Consensus 183 ~~~~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~---vi--~~~~~~~~~~~~ 252 (373)
T 2fzw_A 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATE---CI--NPQDFSKPIQEV 252 (373)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSE---EE--CGGGCSSCHHHH
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCce---Ee--ccccccccHHHH
Confidence 3567889999999999987 889999999873 3489999999999888864 35432 11 2211 111
Q ss_pred -CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEec
Q 021550 175 -PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS 213 (311)
Q Consensus 175 -~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~ 213 (311)
.+...+.+|+||-.... ...+..+.+.|+++ |+++++.
T Consensus 253 v~~~~~~g~D~vid~~g~-~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 253 LIEMTDGGVDYSFECIGN-VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHHTTSCBSEEEECSCC-HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHhCCCCCEEEECCCc-HHHHHHHHHhhccCCcEEEEEe
Confidence 11111479998755544 34788999999999 9999875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-08 Score=89.68 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=104.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEec--CCCeeecccceeeCcccccCCC--Cc-eEEccCCcEE-EEecCCHHHHh--hhh
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVC--QNSAFQNRFGAFKHSDWIGKPF--GS-MVFSNKGGFV-YLLAPTPELWT--LVL 85 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~--~g~~~~~~~G~~~~~~~iG~~~--G~-~~~~~~~~~~-~~~~p~~~~~~--~~~ 85 (311)
..+++||+|++.. ... ||.|..|+.|....+.-.. .+ |. .. .|.+. |+..|....+. ..+
T Consensus 75 ~~~~vGdrV~~~~--------~~~~~cg~C~~C~~g~~~~C~~~~-~~~~g~~~~---~G~~aey~~v~~~~~~~iP~~~ 142 (357)
T 2b5w_A 75 TELEEGDIVVPTV--------RRPPASGTNEYFERDQPDMAPDGM-YFERGIVGA---HGYMSEFFTSPEKYLVRIPRSQ 142 (357)
T ss_dssp SSCCTTCEEEECS--------EECCTTCCCHHHHTTCGGGCCTTS-CEEETTBEE---CCSCBSEEEEEGGGEEECCGGG
T ss_pred CCCCCCCEEEECC--------cCCCCCCCChHHhCcCcccCCCCc-ccccCccCC---CcceeeEEEEchHHeEECCCCc
Confidence 4699999999865 345 8999999988866664221 11 21 11 12221 33333221110 011
Q ss_pred cCCceeeecccHH-HHHHhcCCCCC------CEEEEEcccc-cHHH-HHHH-HHhCCCcEEEEEeCCHH---HHHHHHHH
Q 021550 86 SHRTQILYIADIS-FVIMYLELVPG------CLVLESGTGS-GSLT-TSLA-RAVAPTGHVYTFDFHEQ---RAASARED 152 (311)
Q Consensus 86 ~~~~~~~~~~~~~-~i~~~~~~~~g------~~VLdiG~G~-G~~~-~~la-~~~~~~~~v~~vD~~~~---~~~~a~~~ 152 (311)
+....+..+-..+ ..+..+++++| ++||.+|+|+ |.++ .+++ +.++ ..+|++++.+++ .++.+++
T Consensus 143 ~~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~~~~~~~~~~~~~- 220 (357)
T 2b5w_A 143 AELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRRDRPDPTIDIIEE- 220 (357)
T ss_dssp STTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECCCSSCHHHHHHHH-
T ss_pred chhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCCcccHHHHHHHHH-
Confidence 1111122222212 23466678899 9999999976 8888 8888 7653 334999999988 8887764
Q ss_pred HHhcCCCCcEEEEEecCCCCCCC---CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 153 FERTGVSSFVTVGVRDIQGQGFP---DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 153 ~~~~g~~~~v~~~~~D~~~~~~~---~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|.+. . |..+..+. +. .+.+|+||-.... ...+..+.+.|+++|+++.+..
T Consensus 221 ---lGa~~----v--~~~~~~~~~i~~~-~gg~Dvvid~~g~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 221 ---LDATY----V--DSRQTPVEDVPDV-YEQMDFIYEATGF-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp ---TTCEE----E--ETTTSCGGGHHHH-SCCEEEEEECSCC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred ---cCCcc----c--CCCccCHHHHHHh-CCCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEEeC
Confidence 45422 2 33221111 11 1479997755444 3468899999999999998753
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.4e-07 Score=75.15 Aligned_cols=125 Identities=17% Similarity=0.238 Sum_probs=87.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
+.+...++++.+|||+||++|.++..++... +..+|+++|+-..-.+.-+ .+...|.. .++|..+ |+.. ++.
T Consensus 70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv~~--~~~-- 142 (267)
T 3p8z_A 70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDVFY--LPP-- 142 (267)
T ss_dssp HHHTTSSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCGGG--CCC--
T ss_pred HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccceee--cCC--
Confidence 4445568899999999999999999888875 3568999998654221000 01123444 4999998 8743 333
Q ss_pred CCCccEEEecCCC----hh-------hHHHHHHhcccCCcEEEE--ecCCHHHHHHHHHHHhhcCcee
Q 021550 179 SGLADSIFLDLPQ----PW-------LAIPSAKKMLKQDGILCS--FSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 179 ~~~~D~V~~d~~~----~~-------~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
..+|.|++|+.. ++ .+|+.+.+.|++ |.+++ +.|...++.+.++.|+..|...
T Consensus 143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~ 208 (267)
T 3p8z_A 143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGM 208 (267)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCE
Confidence 569999998752 21 367777899998 67765 6777777878888888755444
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=86.72 Aligned_cols=175 Identities=18% Similarity=0.066 Sum_probs=105.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCC--CceEEccCCcEE-EEecCCHHHHh--hhhcCC
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--GSMVFSNKGGFV-YLLAPTPELWT--LVLSHR 88 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~--G~~~~~~~~~~~-~~~~p~~~~~~--~~~~~~ 88 (311)
..+++||+|++.. ...||.|..|+.|...++.-.. .+ |.. ...|++. |+..|....+. ..++..
T Consensus 77 ~~~~~GDrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~-~~~~g~~--~~~G~~aey~~v~~~~~~~iP~~l~~~ 145 (366)
T 2cdc_A 77 HGFSQGDLVMPVN--------RRGCGICRNCLVGRPDFCETGE-FGEAGIH--KMDGFMREWWYDDPKYLVKIPKSIEDI 145 (366)
T ss_dssp SSCCTTCEEEECS--------EECCSSSHHHHTTCGGGCSSSC-CEEETTB--EECCSCBSEEEECGGGEEEECGGGTTT
T ss_pred CCCCCCCEEEEcC--------CCCCCCChhhhCcCcccCCCCC-cccCCcc--CCCCceeEEEEechHHeEECcCCcchh
Confidence 4699999999865 4579999999999866664221 11 111 0112221 33333322111 011111
Q ss_pred ceeeecccHH-HHHH-----hcCCC--C-------CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH---HHHHHH
Q 021550 89 TQILYIADIS-FVIM-----YLELV--P-------GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---QRAASA 149 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~-----~~~~~--~-------g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~---~~~~~a 149 (311)
.....+-..+ ..+. .++++ + |++||..|+|. |..+..+++..+ .+|++++.++ +.++.+
T Consensus 146 Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~ 223 (366)
T 2cdc_A 146 GILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVI 223 (366)
T ss_dssp GGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHH
T ss_pred hhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHH
Confidence 1111122122 2344 66788 8 99999999976 788888888863 5999999998 777776
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCCCCc---CCCCccEEEecCCChhhHH-HHHHhcccCCcEEEEecC
Q 021550 150 REDFERTGVSSFVTVGVRDIQGQGFPDE---FSGLADSIFLDLPQPWLAI-PSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 150 ~~~~~~~g~~~~v~~~~~D~~~~~~~~~---~~~~~D~V~~d~~~~~~~l-~~~~~~LkpgG~lv~~~~ 214 (311)
++ .|.+. + | .+ .+.+. ..+.+|+||-....+. .+ +.+.+.|+++|.++.+..
T Consensus 224 ~~----~ga~~-v-----~-~~-~~~~~~~~~~~~~d~vid~~g~~~-~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 224 EE----TKTNY-Y-----N-SS-NGYDKLKDSVGKFDVIIDATGADV-NILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp HH----HTCEE-E-----E-CT-TCSHHHHHHHCCEEEEEECCCCCT-HHHHHHGGGEEEEEEEEECSC
T ss_pred HH----hCCce-e-----c-hH-HHHHHHHHhCCCCCEEEECCCChH-HHHHHHHHHHhcCCEEEEEec
Confidence 54 35322 2 2 21 12110 1146999886665433 56 889999999999998754
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=80.36 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|-.+..+++.+++.++..+||.+||.|+.+..++++ .++|+++|.++.+++.|++ +.. +++.++++++....
T Consensus 8 pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~ 79 (285)
T 1wg8_A 8 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLK 79 (285)
T ss_dssp CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHH
T ss_pred hHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHH
Confidence 344455888889999999999999999999999987 5899999999999999998 543 35999999987521
Q ss_pred --CCCcCCCCccEEEecCC
Q 021550 174 --FPDEFSGLADSIFLDLP 190 (311)
Q Consensus 174 --~~~~~~~~~D~V~~d~~ 190 (311)
+.....+++|.|++|++
T Consensus 80 ~~L~~~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 80 RHLAALGVERVDGILADLG 98 (285)
T ss_dssp HHHHHTTCSCEEEEEEECS
T ss_pred HHHHHcCCCCcCEEEeCCc
Confidence 11111146999997654
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=85.66 Aligned_cols=181 Identities=17% Similarity=0.081 Sum_probs=102.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce--
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ-- 90 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~-- 90 (311)
..+++||+|.+... .-.|+.|..|..+....+..... .+... .|.+. |+..|.... ..+|....
T Consensus 74 ~~~~~GdrV~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~G~~ae~~~~~~~~~--~~iP~~~~~~ 140 (348)
T 4eez_A 74 SSLQVGDRVSVAWF-------FEGCGHCEYCVSGNETFCREVKN-AGYSV---DGGMAEEAIVVADYA--VKVPDGLDPI 140 (348)
T ss_dssp CSCCTTCEEEEESE-------EECCSSSHHHHTTCGGGCTTCEE-BTTTB---CCSSBSEEEEEGGGS--CBCCTTSCHH
T ss_pred eecccCCeEeeccc-------ccccCccccccCCcccccccccc-ccccc---CCcceeeccccccce--eecCCCCCHH
Confidence 35899999998653 33467777776665444432111 11111 12221 333332211 11222111
Q ss_pred ---eeecc-c-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 91 ---ILYIA-D-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 91 ---~~~~~-~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
.+... . +-..+...++++|++||.+|+|+ |.++..+++.. ...+|+++|.+++.++.+++ .|.+..++.
T Consensus 141 ~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~ 215 (348)
T 4eez_A 141 EASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKK----IGADVTINS 215 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHH----TTCSEEEEC
T ss_pred HHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhh----cCCeEEEeC
Confidence 01110 0 11245667889999999999998 56777777765 36899999999998887764 455443333
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...|..+..........+|.++.+...+ ..+..+.+.|+++|.++++.
T Consensus 216 ~~~~~~~~v~~~t~g~g~d~~~~~~~~~-~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 216 GDVNPVDEIKKITGGLGVQSAIVCAVAR-IAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp -CCCHHHHHHHHTTSSCEEEEEECCSCH-HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCHHHHhhhhcCCCCceEEEEeccCc-chhheeheeecCCceEEEEe
Confidence 3333221000000114678877665544 47889999999999998753
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-07 Score=77.83 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=85.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
+.+...+.++.+|||+||++|.++..++... +..+|+++|+-..-.+.-+ .+...+. +.+.+..+ |+.. ++.
T Consensus 86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~--l~~-- 158 (321)
T 3lkz_A 86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFY--RPS-- 158 (321)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTS--SCC--
T ss_pred HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhh--CCC--
Confidence 4455568899999999999999999888775 3468999998654110000 0001122 33777776 7643 333
Q ss_pred CCCccEEEecCCC----hh-------hHHHHHHhcccCC-cEEEE--ecCCHHHHHHHHHHHhhcCcee
Q 021550 179 SGLADSIFLDLPQ----PW-------LAIPSAKKMLKQD-GILCS--FSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 179 ~~~~D~V~~d~~~----~~-------~~l~~~~~~Lkpg-G~lv~--~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
..+|.|++|+.. ++ .+|+.+.+.|++| |.|++ +.|+...+.+.++.|+..|...
T Consensus 159 -~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~ 226 (321)
T 3lkz_A 159 -ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGG 226 (321)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCE
T ss_pred -CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCE
Confidence 569999998762 21 3667778889988 88876 5777688888888888755443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=84.89 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=107.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCc---ccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCC-
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS---DWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR- 88 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~---~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~- 88 (311)
..+++||+|.+.. ...|+.|..|..|....+ ..+|... .|.+. |+..|....+ .+|..
T Consensus 73 ~~~~~GdrV~~~~--------~~~~g~c~~c~~g~~~~c~~~~~~g~~~-------~G~~aey~~v~~~~~~--~iP~~l 135 (346)
T 4a2c_A 73 DDLHPGDAVACVP--------LLPCFTCPECLKGFYSQCAKYDFIGSRR-------DGGFAEYIVVKRKNVF--ALPTDM 135 (346)
T ss_dssp CSCCTTCEEEECC--------EECCSCSHHHHTTCGGGCSSCEEBTTTB-------CCSSBSEEEEEGGGEE--ECCTTS
T ss_pred ccccCCCeEEeee--------ccCCCCcccccCCccccCCCcccccCCC-------CcccccccccchheEE--ECCCCC
Confidence 3589999999876 556899999988875544 3344221 12221 3333322111 11111
Q ss_pred ----ceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 89 ----TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 89 ----~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
...+.+-... .......+.+|++||..|+|+ |.++.++++.++ ...++++|.+++.++.|++ .|.+..+
T Consensus 136 ~~~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i 210 (346)
T 4a2c_A 136 PIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTF 210 (346)
T ss_dssp CGGGGGGHHHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEE
T ss_pred CHHHHHhchHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEE
Confidence 1122222222 356677899999999999987 778888888863 5678899999999888875 5654322
Q ss_pred EEEEecCCC--CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+....|..+ ..+.+ ...+|+|+-... ....++.+.+.|+++|.++++..
T Consensus 211 ~~~~~~~~~~~~~~~~--~~g~d~v~d~~G-~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 211 NSSEMSAPQMQSVLRE--LRFNQLILETAG-VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp ETTTSCHHHHHHHHGG--GCSSEEEEECSC-SHHHHHHHHHHCCTTCEEEECCC
T ss_pred eCCCCCHHHHHHhhcc--cCCccccccccc-ccchhhhhhheecCCeEEEEEec
Confidence 211111110 00111 145787664443 34578899999999999998754
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-08 Score=87.51 Aligned_cols=171 Identities=18% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
.+++||+|++... ...||.|..|+.|...++. ..|.. ..|++. |+..|....+ .+|...
T Consensus 76 ~~~vGdrV~~~~~-------~~~cg~C~~C~~g~~~~C~~~~~~g~~-------~~G~~aey~~v~~~~~~--~~P~~~~ 139 (339)
T 1rjw_A 76 HLKVGDRVGIPWL-------YSACGHCDYCLSGQETLCEHQKNAGYS-------VDGGYAEYCRAAADYVV--KIPDNLS 139 (339)
T ss_dssp SCCTTCEEEECSE-------EECCSCSHHHHTTCGGGCTTCEEBTTT-------BCCSSBSEEEEEGGGCE--ECCTTSC
T ss_pred cCCCCCEEEEecC-------CCCCCCCchhhCcCcccCCCcceeecC-------CCCcceeeEEechHHEE--ECCCCCC
Confidence 5899999997531 2248999999888755543 22311 112211 3333322111 111111
Q ss_pred ----eeeecc-c-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 90 ----QILYIA-D-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 90 ----~~~~~~-~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
..+... . +-..+..+++++|++||.+|+|. |..+..+++.. +.+|++++.+++.++.+++ .|.+.
T Consensus 140 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-- 211 (339)
T 1rjw_A 140 FEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADL-- 211 (339)
T ss_dssp HHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSE--
T ss_pred HHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCE--
Confidence 011111 1 11244556889999999999976 88888888886 3699999999998887764 45432
Q ss_pred EEEEecCCCCCCCC----cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQGFPD----EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~~~~----~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ .|..+..+.+ .. +.+|+||-....+ ..++.+.+.|+++|+++.+..
T Consensus 212 -~--~d~~~~~~~~~~~~~~-~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 212 -V--VNPLKEDAAKFMKEKV-GGVHAAVVTAVSK-PAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp -E--ECTTTSCHHHHHHHHH-SSEEEEEESSCCH-HHHHHHHHHEEEEEEEEECCC
T ss_pred -E--ecCCCccHHHHHHHHh-CCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEecc
Confidence 1 2332211110 01 3689987665543 478889999999999988643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=85.86 Aligned_cols=177 Identities=19% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCC-HHHHhh-hhcCCce
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPT-PELWTL-VLSHRTQ 90 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~-~~~~~~-~~~~~~~ 90 (311)
..+++||+|+... ...||.|..|+.|...++.-.. .+|.. ..|.+. |+..|. ...+.. .++....
T Consensus 82 ~~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~-~~G~~---~~G~~aey~~v~~~~~~~~i~~~~~~~a 149 (347)
T 1jvb_A 82 VGYSKGDLVAVNP--------WQGEGNCYYCRIGEEHLCDSPR-WLGIN---FDGAYAEYVIVPHYKYMYKLRRLNAVEA 149 (347)
T ss_dssp CSCCTTCEEEECC--------EECCSSSHHHHTTCGGGCSSCE-EBTTT---BCCSSBSEEEESCGGGEEECSSSCHHHH
T ss_pred CCCCCCCEEEeCC--------CCCCCCChhhhCcCcccCcccc-ccccc---CCCcceeEEEecCccceEEeCCCCHHHc
Confidence 3589999996654 4569999999988865554211 01110 112221 334443 221111 0000000
Q ss_pred eeeccc---HHHHHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 91 ILYIAD---ISFVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 91 ~~~~~~---~~~i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
...+.. +-..+..+++.+|++||..|+|+ |..+..+++... +.+|+++|.+++.++.+++ .|.+. +.
T Consensus 150 a~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~~---~~ 221 (347)
T 1jvb_A 150 APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADY---VI 221 (347)
T ss_dssp GGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSE---EE
T ss_pred ccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCE---Ee
Confidence 000110 11244567899999999999983 677888888761 3689999999998887754 34332 11
Q ss_pred EecCCCCCC----CCcCC-CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 166 VRDIQGQGF----PDEFS-GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 166 ~~D~~~~~~----~~~~~-~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|..+..+ ..... +.+|+||-.... ...++.+.+.|+++|+++.+.
T Consensus 222 --~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 222 --NASMQDPLAEIRRITESKGVDAVIDLNNS-EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp --ETTTSCHHHHHHHHTTTSCEEEEEESCCC-HHHHTTGGGGEEEEEEEEECC
T ss_pred --cCCCccHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHHHhcCCEEEEEC
Confidence 2221111 11111 469998766554 346788999999999999875
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-08 Score=89.14 Aligned_cols=174 Identities=19% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc---
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT--- 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~--- 89 (311)
..+++||+|+... ...||.|..|+.|...++.-.. .+|.. ..|++. |+..|.... ..+|...
T Consensus 77 ~~~~vGdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~-~~g~~---~~G~~aey~~v~~~~~--~~iP~~~~~~ 142 (343)
T 2dq4_A 77 RRPQVGDHVSLES--------HIVCHACPACRTGNYHVCLNTQ-ILGVD---RDGGFAEYVVVPAENA--WVNPKDLPFE 142 (343)
T ss_dssp CSSCTTCEEEECC--------EECCSCSHHHHTTCGGGCTTCE-EBTTT---BCCSSBSEEEEEGGGE--EEECTTSCHH
T ss_pred CcCCCCCEEEECC--------CCCCCCChhhhCcCcccCCCcc-eecCC---CCCcceeEEEEchHHe--EECCCCCCHH
Confidence 3589999999865 5569999999988866654211 01110 111111 222222111 1111110
Q ss_pred --eeeecccHH-HHHH-hcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 90 --QILYIADIS-FVIM-YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 90 --~~~~~~~~~-~i~~-~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
..+.+-..+ ..+. .+++ +|++||.+|+|. |.++.++++..+ ..+|++++.+++.++.+++. .+ .+
T Consensus 143 ~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~l-----a~---~v 212 (343)
T 2dq4_A 143 VAAILEPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARPY-----AD---RL 212 (343)
T ss_dssp HHTTHHHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTTT-----CS---EE
T ss_pred HHHhhhHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-----HH---hc
Confidence 111121112 2344 6788 999999999976 888889998863 23899999999887776542 11 11
Q ss_pred EEecCCCCCCCC----cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPD----EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~----~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|..+..+.+ .....+|+||-.... ...++.+.+.|+++|+++.+..
T Consensus 213 --~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 213 --VNPLEEDLLEVVRRVTGSGVEVLLEFSGN-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp --ECTTTSCHHHHHHHHHSSCEEEEEECSCC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred --cCcCccCHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 1222111110 011469998765554 3468899999999999998754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-07 Score=85.25 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=102.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~ 89 (311)
..+++||+|++.. ...||.|..|+.|....+. .+|... .|.+. |+..|.... ..++...
T Consensus 77 ~~~~vGdrV~~~~--------~~~cg~c~~C~~g~~~~C~~~~~~G~~~-------~G~~aey~~v~~~~~--~~~P~~~ 139 (343)
T 2eih_A 77 EGFAPGDEVVINP--------GLSCGRCERCLAGEDNLCPRYQILGEHR-------HGTYAEYVVLPEANL--APKPKNL 139 (343)
T ss_dssp CSCCTTCEEEECC--------EECCSCSHHHHTTCGGGCTTCEETTTSS-------CCSSBSEEEEEGGGE--EECCTTS
T ss_pred CCCCCCCEEEECC--------CCCcccchhhccCcccccccccccCcCC-------CccceeEEEeChHHe--EECCCCC
Confidence 3589999999866 4568999999888755553 333210 12211 333332211 1112111
Q ss_pred e------eeecccHH-HHHHh-cCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 021550 90 Q------ILYIADIS-FVIMY-LELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159 (311)
Q Consensus 90 ~------~~~~~~~~-~i~~~-~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~ 159 (311)
. +..+-..+ ..+.. ++++++++||..|+ | .|..+..+++.. +.+|++++.+++.++.+++ .|..
T Consensus 140 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~ 213 (343)
T 2eih_A 140 SFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGAD 213 (343)
T ss_dssp CHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS
T ss_pred CHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC
Confidence 0 11111111 23333 57889999999998 3 488888888886 4699999999998888764 3543
Q ss_pred CcEEEEEecCCCCCC----CCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 160 SFVTVGVRDIQGQGF----PDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 160 ~~v~~~~~D~~~~~~----~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. + .|..+..+ .+.. ...+|+||-... ...++.+.+.|+++|+++.+..
T Consensus 214 ~---~--~d~~~~~~~~~~~~~~~~~~~d~vi~~~g--~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 214 E---T--VNYTHPDWPKEVRRLTGGKGADKVVDHTG--ALYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp E---E--EETTSTTHHHHHHHHTTTTCEEEEEESSC--SSSHHHHHHHEEEEEEEEESSC
T ss_pred E---E--EcCCcccHHHHHHHHhCCCCceEEEECCC--HHHHHHHHHhhccCCEEEEEec
Confidence 2 1 23322111 0001 147999886665 3478899999999999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-07 Score=83.60 Aligned_cols=172 Identities=19% Similarity=0.142 Sum_probs=100.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
.+++||+|.+... ...||.|..|+.|...++. ..|.. ..|++. |+..|....+ .+|...
T Consensus 81 ~~~~GdrV~~~~~-------~~~cg~C~~C~~g~~~~C~~~~~~g~~-------~~G~~aey~~v~~~~~~--~iP~~~~ 144 (347)
T 2hcy_A 81 GWKIGDYAGIKWL-------NGSCMACEYCELGNESNCPHADLSGYT-------HDGSFQQYATADAVQAA--HIPQGTD 144 (347)
T ss_dssp SCCTTCEEEECSE-------EECCSSSTTTTTTCGGGCTTCEEBTTT-------BCCSSBSEEEEETTTSE--EECTTCC
T ss_pred CCcCCCEEEEecC-------CCCCCCChhhhCCCcccCccccccccC-------CCCcceeEEEeccccEE--ECCCCCC
Confidence 5899999997431 2348999999888755543 23311 112211 3333322111 111111
Q ss_pred ----eeee-ccc-HHHHHHhcCCCCCCEEEEEcc--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 90 ----QILY-IAD-ISFVIMYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 90 ----~~~~-~~~-~~~i~~~~~~~~g~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
..+. +-. +-..+..+++.+|++||..|+ |.|..+..+++.. +.+|++++.+++.++.+++ .|...
T Consensus 145 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~- 217 (347)
T 2hcy_A 145 LAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEV- 217 (347)
T ss_dssp HHHHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCE-
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCce-
Confidence 1111 111 112445568899999999998 3477888888875 3699999999888776654 34331
Q ss_pred EEEEEecCCC-CCCC----CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 162 VTVGVRDIQG-QGFP----DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 v~~~~~D~~~-~~~~----~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ .|..+ ..+. ....+.+|+||..... ...++.+.+.|+++|+++.+..
T Consensus 218 --~--~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 218 --F--IDFTKEKDIVGAVLKATDGGAHGVINVSVS-EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp --E--EETTTCSCHHHHHHHHHTSCEEEEEECSSC-HHHHHHHTTSEEEEEEEEECCC
T ss_pred --E--EecCccHhHHHHHHHHhCCCCCEEEECCCc-HHHHHHHHHHHhcCCEEEEEeC
Confidence 1 24331 1111 0011268998866554 3478899999999999998753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-07 Score=78.25 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.+.--+.++.+|||+||++|+++..+++.. +...|+++|+.......... ....+ .+.+.+ ..++....+..
T Consensus 73 i~ek~l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~-~~~~di~~l~~--- 145 (300)
T 3eld_A 73 LHERGYLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKF-KDKSNVFTMPT--- 145 (300)
T ss_dssp HHHHTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEE-ECSCCTTTSCC---
T ss_pred HHHhCCCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccC-CceEEe-ecCceeeecCC---
Confidence 3334235788999999999999999999764 45688999986532110000 00001 121222 22222122333
Q ss_pred CCccEEEecCCCh-----------hhHHHHHHhcccCC-cEEEE--ecCCHHHHHHHHHHHhhcCceeeE
Q 021550 180 GLADSIFLDLPQP-----------WLAIPSAKKMLKQD-GILCS--FSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 180 ~~~D~V~~d~~~~-----------~~~l~~~~~~Lkpg-G~lv~--~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
+.+|+|++|+... ..+|.-+.++|+|| |.|++ |.|+......+...|+..|..+..
T Consensus 146 ~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~ 215 (300)
T 3eld_A 146 EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIV 215 (300)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEE
T ss_pred CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEE
Confidence 6899999986532 13567778999999 99997 455588888899999887776553
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-07 Score=83.90 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred HHHhcCCC-CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~-~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.+..+++. +|++||.+|+|. |.++.++++..+ .+|++++.+++.++.+++ ..|.+..++. .+. ..+.+.
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~---~lGa~~vi~~--~~~--~~~~~~ 241 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQ---DLGADDYVIG--SDQ--AKMSEL 241 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHT---TSCCSCEEET--TCH--HHHHHS
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH---HcCCceeecc--ccH--HHHHHh
Confidence 34556788 999999999987 888999999874 589999999888776652 3455431211 110 001110
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+.+|+||-....+ ..++.+.+.|+++|+++.+.
T Consensus 242 -~~g~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 242 -ADSLDYVIDTVPVH-HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp -TTTEEEEEECCCSC-CCSHHHHTTEEEEEEEEECS
T ss_pred -cCCCCEEEECCCCh-HHHHHHHHHhccCCEEEEeC
Confidence 14699987554432 35678889999999999874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-07 Score=81.57 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=100.1
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCC------CceEEccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF------GSMVFSNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~------G~~~~~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|++... ...||.|..|+.|....++.....+ |.. ..|++. |+..|....+ .++.
T Consensus 91 ~~~vGDrV~~~~~-------~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~---~~G~~aey~~v~~~~~~--~~P~ 158 (366)
T 1yqd_A 91 KVNVGDKVGVGCL-------VGACHSCESCANDLENYCPKMILTYASIYHDGTI---TYGGYSNHMVANERYII--RFPD 158 (366)
T ss_dssp SCCTTCEEEECSE-------EECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCB---CCCSSBSEEEEEGGGCE--ECCT
T ss_pred cCCCCCEEEEcCC-------cCCCCCChhhhCcCcccCCcccccccccccCCCc---CCCccccEEEEchhhEE--ECCC
Confidence 5899999987431 3468999999888765553211000 111 112221 3333322111 1111
Q ss_pred C-----ceeee-cccHH-HHHHhcCCC-CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 R-----TQILY-IADIS-FVIMYLELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 ~-----~~~~~-~~~~~-~i~~~~~~~-~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
. ...+. +-..+ ..+..+++. +|++||.+|+|. |.++..+++.. +.+|++++.+++.++.+++ ..|.
T Consensus 159 ~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa 233 (366)
T 1yqd_A 159 NMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGA 233 (366)
T ss_dssp TSCTTTTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCC
Confidence 1 11111 11111 244556788 999999999987 88888899886 3689999999988776653 3454
Q ss_pred CCcEEEEEecCCC-CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 159 SSFVTVGVRDIQG-QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 159 ~~~v~~~~~D~~~-~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+. ++ |..+ ..+.+.. +.+|+||-....+ ..++.+.+.|+++|+++.+.
T Consensus 234 ~~---v~--~~~~~~~~~~~~-~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 234 DS---FL--VSRDQEQMQAAA-GTLDGIIDTVSAV-HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp SE---EE--ETTCHHHHHHTT-TCEEEEEECCSSC-CCSHHHHHHEEEEEEEEECC
T ss_pred ce---EE--eccCHHHHHHhh-CCCCEEEECCCcH-HHHHHHHHHHhcCCEEEEEc
Confidence 32 11 2211 0011101 4699988655433 24577888999999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-07 Score=82.54 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=71.6
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~ 178 (311)
..+++++|++||.+|+|. |.++.++++.. +.+|++++.+++.++.+++ .|.+. ++..+..+ ..+.+..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADH---GINRLEEDWVERVYALT 253 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCE---EEcCCcccHHHHHHHHh
Confidence 567899999999999887 88999999986 4699999999998888765 45543 12211110 0010001
Q ss_pred -CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 -SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 -~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+|+||-... ...+..+.+.|+++|.++++.
T Consensus 254 ~g~g~D~vid~~g--~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 254 GDRGADHILEIAG--GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp TTCCEEEEEEETT--SSCHHHHHHHEEEEEEEEEEC
T ss_pred CCCCceEEEECCC--hHHHHHHHHHhhcCCEEEEEe
Confidence 137999886555 347888999999999999874
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-07 Score=82.23 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=100.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce--
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ-- 90 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~-- 90 (311)
..+++||+|+... ...||.|..|+.|...++.-.. .+|.. ..|++. |+..|....+ .+|....
T Consensus 93 ~~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~-~~G~~---~~G~~aey~~v~~~~~~--~iP~~~~~~ 158 (359)
T 1h2b_A 93 EGLEKGDPVILHP--------AVTDGTCLACRAGEDMHCENLE-FPGLN---IDGGFAEFMRTSHRSVI--KLPKDISRE 158 (359)
T ss_dssp CSCCTTCEEEECS--------CBCCSCSHHHHTTCGGGCTTCB-CBTTT---BCCSSBSEEEECGGGEE--ECCTTCCHH
T ss_pred CCCCCCCEEEeCC--------CCCCCCChhhhCcCcccCCCcc-ccccC---CCCcccceEEechHhEE--ECCCCCCHH
Confidence 3589999997654 3459999999988866654211 11211 112221 3333322111 1111110
Q ss_pred --e-eeccc-----HHHHHHh--cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 021550 91 --I-LYIAD-----ISFVIMY--LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159 (311)
Q Consensus 91 --~-~~~~~-----~~~i~~~--~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~ 159 (311)
. +.+-. +-..+.. +++++|++||..|+|. |.++.++++..+ +.+|+++|.+++.++.+++ .|.+
T Consensus 159 ~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~ 233 (359)
T 1h2b_A 159 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD 233 (359)
T ss_dssp HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS
T ss_pred HHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCC
Confidence 0 00111 1123444 7899999999999987 888889999872 2589999999998888764 4644
Q ss_pred CcEEEEEecCCCC---CCCCcC-CCCccEEEecCCChh-hHHHHHHhcccCCcEEEEec
Q 021550 160 SFVTVGVRDIQGQ---GFPDEF-SGLADSIFLDLPQPW-LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 160 ~~v~~~~~D~~~~---~~~~~~-~~~~D~V~~d~~~~~-~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ++ |..+. .+.+.. ...+|+||-....+. ..+..+.+. ++|+++.+.
T Consensus 234 ~---vi--~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g 285 (359)
T 1h2b_A 234 H---VV--DARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVG 285 (359)
T ss_dssp E---EE--ETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECC
T ss_pred E---EE--eccchHHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEe
Confidence 3 11 22111 000001 137999875555432 156677776 999998875
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.6e-06 Score=73.88 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+++|.+|||+||++|+++..++++ +++|+++|+.+- -... . .. .+|.++.+|+.....+. +.+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l-~~~l----~--~~-~~V~~~~~d~~~~~~~~---~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPM-AQSL----M--DT-GQVTWLREDGFKFRPTR---SNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCC-CHHH----H--TT-TCEEEECSCTTTCCCCS---SCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhc-Chhh----c--cC-CCeEEEeCccccccCCC---CCcCEE
Confidence 578999999999999999999887 589999998642 1111 1 12 34999999987544443 689999
Q ss_pred EecCCChh-hHHHHHHhcccCC
Q 021550 186 FLDLPQPW-LAIPSAKKMLKQD 206 (311)
Q Consensus 186 ~~d~~~~~-~~l~~~~~~Lkpg 206 (311)
++|+...+ ..+..+.+.|..+
T Consensus 275 vsDm~~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 275 VCDMVEKPAKVAALMAQWLVNG 296 (375)
T ss_dssp EECCSSCHHHHHHHHHHHHHTT
T ss_pred EEcCCCChHHhHHHHHHHHhcc
Confidence 99986543 4555555555554
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=68.19 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEcc------cccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 105 ELVPGCLVLESGT------GSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 105 ~~~~g~~VLdiG~------G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.+..|++|||+|+ .+|. .++++++|. +.|+++|+.+-. ...+ .++++|... ....
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~-----------sda~--~~IqGD~~~-~~~~- 167 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFV-----------SDAD--STLIGDCAT-VHTA- 167 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCB-----------CSSS--EEEESCGGG-EEES-
T ss_pred eecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCcccc-----------cCCC--eEEEccccc-cccC-
Confidence 4678999999996 5677 355555676 599999997632 1122 348899753 2222
Q ss_pred CCCCccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 178 FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
++||+|++|+... ..++.-+.+.|+|||.|++=....+.. +....+++.|..++.+
T Consensus 168 --~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~-~~L~~lrk~F~~VK~f 239 (344)
T 3r24_A 168 --NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN-ADLYKLMGHFSWWTAF 239 (344)
T ss_dssp --SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC-HHHHHHHTTEEEEEEE
T ss_pred --CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH-HHHHHHHhhCCeEEEE
Confidence 7899999987522 245677888999999999844333332 2344444566655544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.2e-06 Score=72.78 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=87.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--C-CCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--Q-GFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~-~~~~~~~~~~D~ 184 (311)
.+..+||+-+|||.+++.+++. ..+++.+|.++..++..++|+.. ..++++...|... . ..+. ...||+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~--~~~fdL 162 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP--PEKRGL 162 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC--TTSCEE
T ss_pred cCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC--CCCccE
Confidence 3567999999999999888773 58999999999999999998764 3459999999753 1 1121 146999
Q ss_pred EEecCCCh-h----hHHHHHHh--cccCCcEEEEecCCH--HHHHHHHHHHhh-cCceeeEEEee
Q 021550 185 IFLDLPQP-W----LAIPSAKK--MLKQDGILCSFSPCI--EQVQRSCESLRL-NFTDIRTFEIL 239 (311)
Q Consensus 185 V~~d~~~~-~----~~l~~~~~--~LkpgG~lv~~~~~~--~~~~~~~~~l~~-~f~~~~~~e~~ 239 (311)
||+|+|-. . .+++.+.+ .+.|+|.++++-|.. .....+.+.|++ +. +.-..|..
T Consensus 163 VfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~-~~l~~el~ 226 (283)
T 2oo3_A 163 IFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS-KSVRIELH 226 (283)
T ss_dssp EEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS-SEEEEEEE
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC-CeEEEEEE
Confidence 99999855 2 23333332 456899999986644 556777777765 55 55445543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-06 Score=79.05 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC--------C--
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ--------G-- 171 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~--------~-- 171 (311)
+++++|++||.+|+ |. |.++.++++.. +.++++++.+++.++.+++ .|.+..+.....|.. .
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchH
Confidence 67899999999998 65 88999999986 4689999999998888865 455431111111110 0
Q ss_pred ------CCCCC-cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 172 ------QGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 172 ------~~~~~-~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+.+ .....+|+||-.... ..+..+.+.|+++|.++++.
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPGR--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSCH--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCc--hhHHHHHHHhhCCcEEEEEe
Confidence 00000 011479997755443 58899999999999999864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.9e-06 Score=78.55 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=70.2
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---------
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--------- 172 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--------- 172 (311)
+++.+|++||..|+ |. |..+..+++.. ++++++++.+++.++.+++ .|.+..+.....|....
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccc
Confidence 67899999999997 55 88889999886 4689999999998888754 46544222221221100
Q ss_pred --------CCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 173 --------GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 173 --------~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+.+.....+|+||-.... ..+..+.+.|+++|.++.+.
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGR--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCH--HHHHHHHHHSCTTCEEEESC
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCc--hHHHHHHHHHhcCCEEEEEe
Confidence 0000012469998765554 37889999999999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.8e-05 Score=67.20 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=47.2
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g 157 (311)
..++..+. .+|+.|||++||+|..+..+++. +.+++++|+++.+++.|++++....
T Consensus 226 ~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 226 ERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 34555555 68999999999999999887765 4799999999999999999987653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=66.15 Aligned_cols=75 Identities=13% Similarity=0.019 Sum_probs=60.7
Q ss_pred eecccHHHHHHhcCCCC------CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 92 LYIADISFVIMYLELVP------GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~------g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
+.+..+..|++.+++.+ ++.|||||+|.|.+|..|++... ..+|+++|+++.++...++.+ . . ++++++
T Consensus 36 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~--~-~~l~ii 110 (353)
T 1i4w_A 36 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E--G-SPLQIL 110 (353)
T ss_dssp CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T--T-SSCEEE
T ss_pred CCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c--C-CCEEEE
Confidence 34555667888888764 58999999999999999998742 468999999999999888765 2 2 359999
Q ss_pred EecCCC
Q 021550 166 VRDIQG 171 (311)
Q Consensus 166 ~~D~~~ 171 (311)
.+|+.+
T Consensus 111 ~~D~l~ 116 (353)
T 1i4w_A 111 KRDPYD 116 (353)
T ss_dssp CSCTTC
T ss_pred ECCccc
Confidence 999964
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.6e-05 Score=58.47 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred HHHHhcCCCCCCEEEEEccccc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSG-SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G-~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++.+.. .++.+|||+|||+| ..+..|++.. +..|+++|+++..++ ++..|+.+ +..+
T Consensus 28 YI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~-P~~~- 85 (153)
T 2k4m_A 28 YIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITS-PRME- 85 (153)
T ss_dssp HHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSS-CCHH-
T ss_pred HHHhcC--CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCC-Cccc-
Confidence 444443 45689999999999 5999998853 578999999987654 66777764 2221
Q ss_pred CCCCccEEE-ecCC-ChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIF-LDLP-QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~-~d~~-~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.-+.||+|. +++| +....+..+++. -|.-+++.
T Consensus 86 ~Y~~~DLIYsirPP~El~~~i~~lA~~--v~adliI~ 120 (153)
T 2k4m_A 86 IYRGAALIYSIRPPAEIHSSLMRVADA--VGARLIIK 120 (153)
T ss_dssp HHTTEEEEEEESCCTTTHHHHHHHHHH--HTCEEEEE
T ss_pred ccCCcCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 003799984 5554 333444444442 34556643
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00031 Score=61.88 Aligned_cols=136 Identities=20% Similarity=0.152 Sum_probs=77.3
Q ss_pred CCCCEEEEEcccccHHHHHHH---HHhCCCcEE--EEEeCCH--------H-HHHHHHHHHHhc----CCCCcEEEEEec
Q 021550 107 VPGCLVLESGTGSGSLTTSLA---RAVAPTGHV--YTFDFHE--------Q-RAASAREDFERT----GVSSFVTVGVRD 168 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la---~~~~~~~~v--~~vD~~~--------~-~~~~a~~~~~~~----g~~~~v~~~~~D 168 (311)
.+.-+|||+|-|+|...+... ...++..++ +++|..+ + ..+..+...... +-.-.+++..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 344589999999998654433 334555554 5666421 1 112222222221 111135677888
Q ss_pred CCCCCCCCcCCCCccEEEecCCCh------h--hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEee
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEIL 239 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~------~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~ 239 (311)
+.. .++......+|++++|.-.| | +++..+.+.++|||.++.|+... .+...|.+ ||.-.+ ..-.
T Consensus 175 a~~-~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag----~VRR~L~~aGF~V~k-~~G~ 248 (308)
T 3vyw_A 175 ARK-RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSL----SVRKSLLTLGFKVGS-SREI 248 (308)
T ss_dssp HHH-HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH----HHHHHHHHTTCEEEE-EECC
T ss_pred HHH-HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH----HHHHHHHHCCCEEEe-cCCC
Confidence 864 22221115799999986432 3 68999999999999999988753 35556666 776332 3333
Q ss_pred ceeeEEeee
Q 021550 240 LRTYEIRQW 248 (311)
Q Consensus 240 ~r~~~v~~~ 248 (311)
-+.-+....
T Consensus 249 g~KReml~A 257 (308)
T 3vyw_A 249 GRKRKGTVA 257 (308)
T ss_dssp ---CEEEEE
T ss_pred CCCCceeEE
Confidence 333344433
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.3e-05 Score=67.70 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=71.0
Q ss_pred HhcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----
Q 021550 102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP---- 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---- 175 (311)
..+++++|++||..| +|. |..+..+++.. +.+|++++.+++.++.+++ .|.+. ++ |.....+.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~---~~--~~~~~~~~~~~~ 202 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWE---TI--DYSHEDVAKRVL 202 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSE---EE--ETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCE---EE--eCCCccHHHHHH
Confidence 456789999999999 555 88999999887 3699999999999888874 35432 11 22111110
Q ss_pred Cc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. ....+|+||-.... ..+..+.+.|+++|+++++..
T Consensus 203 ~~~~~~g~Dvvid~~g~--~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 203 ELTDGKKCPVVYDGVGQ--DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp HHTTTCCEEEEEESSCG--GGHHHHHTTEEEEEEEEECCC
T ss_pred HHhCCCCceEEEECCCh--HHHHHHHHHhcCCCEEEEEec
Confidence 00 11479998866554 578899999999999998753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.1e-05 Score=67.07 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=69.3
Q ss_pred hcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----C
Q 021550 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----D 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~ 176 (311)
..++.+|++||..| +|. |..+..+++.. +.+|++++.+++.++.+++ .|.+. ++ |.....+. +
T Consensus 143 ~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~--~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEY---LI--NASKEDILRQVLK 211 (334)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---EE--ETTTSCHHHHHHH
T ss_pred hccCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EE--eCCCchHHHHHHH
Confidence 45789999999999 454 88888899886 4699999999998887764 45432 11 22111110 0
Q ss_pred c-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 E-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ....+|+||-.... ..+..+.+.|+++|+++.+.
T Consensus 212 ~~~~~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 212 FTNGKGVDASFDSVGK--DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp HTTTSCEEEEEECCGG--GGHHHHHHHEEEEEEEEECC
T ss_pred HhCCCCceEEEECCCh--HHHHHHHHHhccCCEEEEEc
Confidence 0 01469998866554 57899999999999999864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=66.64 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=71.1
Q ss_pred HhcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----C
Q 021550 102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF----P 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~ 175 (311)
..+++++|++||..| +|. |..+..+++.. +.+|++++.+++.++.+++ .|.+. +. |.....+ .
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~---~~--~~~~~~~~~~~~ 225 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDR---PI--NYKTEPVGTVLK 225 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---EE--ETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcE---EE--ecCChhHHHHHH
Confidence 456889999999999 455 88899999886 4589999999988887764 45432 11 2211111 1
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
......+|+||-.... ..++.+.+.|+++|+++++..
T Consensus 226 ~~~~~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 226 QEYPEGVDVVYESVGG--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp HHCTTCEEEEEECSCT--HHHHHHHHHEEEEEEEEECCC
T ss_pred HhcCCCCCEEEECCCH--HHHHHHHHHHhcCCEEEEEeC
Confidence 0011469998866654 478899999999999998764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00033 Score=60.50 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=45.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g 157 (311)
.++.... .+|+.|||..||+|..+.++++. +.+++++|+++..++.|++++...+
T Consensus 204 ~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 204 RIIRASS-NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHC-CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHhC-CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 4555543 78999999999999999887765 5799999999999999999987654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00023 Score=64.64 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=70.8
Q ss_pred HhcCCC-----CCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 102 MYLELV-----PGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 102 ~~~~~~-----~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+++. +|++||..| +|. |.++.++++.++ +.+|++++.+++.++.+++ .|.+..++. ..|..+ .+
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad~vi~~-~~~~~~-~v 232 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAHHVIDH-SKPLAA-EV 232 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCSEEECT-TSCHHH-HH
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCCEEEeC-CCCHHH-HH
Confidence 556777 899999999 776 899999998753 5799999999998888764 464421111 011110 01
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+...+.+|+||-. ......++.+.+.|+++|+++++.
T Consensus 233 ~~~~~~g~Dvvid~-~g~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 233 AALGLGAPAFVFST-THTDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp HTTCSCCEEEEEEC-SCHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHhcCCCceEEEEC-CCchhhHHHHHHHhcCCCEEEEEC
Confidence 11112579987644 444457889999999999999863
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=60.60 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=67.9
Q ss_pred HhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----C
Q 021550 102 MYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF----P 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~ 175 (311)
..+++.+|++||..|+ | .|..+..++... +.+|++++.+++..+.+++ .|... . .|..+..+ .
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~---~--~d~~~~~~~~~~~ 100 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEY---V--GDSRSVDFADEIL 100 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSE---E--EETTCSTHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCE---E--eeCCcHHHHHHHH
Confidence 4567899999999994 3 377777777775 3689999999988776643 34321 1 23322111 0
Q ss_pred C-cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 D-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~-~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ .....+|++|.+... ..+..+.+.|+++|+++.+..
T Consensus 101 ~~~~~~~~D~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 101 ELTDGYGVDVVLNSLAG--EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HHTTTCCEEEEEECCCT--HHHHHHHHTEEEEEEEEECSC
T ss_pred HHhCCCCCeEEEECCch--HHHHHHHHHhccCCEEEEEcC
Confidence 0 001469998876543 478899999999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=65.54 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=71.1
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP---- 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---- 175 (311)
..+++++|++||..|+ |. |..+..+++.. +.+|++++.+++.++.+.+ ..|.+. + .|..+..+.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~---~--~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDG---A--IDYKNEDLAAGLK 212 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSE---E--EETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCE---E--EECCCHHHHHHHH
Confidence 6778999999999998 43 88888888886 4699999999988877732 245432 1 122211111
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+...+.+|+||-+... ..+..+.+.|+++|+++++..
T Consensus 213 ~~~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 213 RECPKGIDVFFDNVGG--EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp HHCTTCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred HhcCCCceEEEECCCc--chHHHHHHHHhhCCEEEEEee
Confidence 1112579998766554 478999999999999998754
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=60.00 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCEEEEEcccccHHHHHHHHHh--------------CCCcEEEEEeCCHHHHHHHHHHHHhcC-----------C--C-C
Q 021550 109 GCLVLESGTGSGSLTTSLARAV--------------APTGHVYTFDFHEQRAASAREDFERTG-----------V--S-S 160 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~g-----------~--~-~ 160 (311)
..+|+|+|||+|..|+.++..+ .|..+|+.-|+........=+.+.... . . .
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4789999999999998873322 145778888876654433322222110 0 0 1
Q ss_pred cEEEEEecCCCCCCCCcCCCCccEEEecCCChh-------------------------------------------hHHH
Q 021550 161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW-------------------------------------------LAIP 197 (311)
Q Consensus 161 ~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~-------------------------------------------~~l~ 197 (311)
-+.-+.+.+....++. +++|+|+++..-.| .+|+
T Consensus 133 f~~gvpgSFy~rlfP~---~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPA---RTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp EEEEEESCTTSCCSCT---TCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCC---cceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1222333444355666 89999986433222 2477
Q ss_pred HHHhcccCCcEEEEe
Q 021550 198 SAKKMLKQDGILCSF 212 (311)
Q Consensus 198 ~~~~~LkpgG~lv~~ 212 (311)
...+.|+|||++++.
T Consensus 210 ~ra~eL~pGG~mvl~ 224 (374)
T 3b5i_A 210 ARAAEVKRGGAMFLV 224 (374)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEE
Confidence 779999999999874
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00047 Score=61.11 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+..+++++|++||..|+|+ |.++.++++..+ .+|++++ +++.++.+++ .|.+. ++ .| . ..+ .
T Consensus 134 al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~----lGa~~---v~-~d-~-~~v-~-- 197 (315)
T 3goh_A 134 AFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK----RGVRH---LY-RE-P-SQV-T-- 197 (315)
T ss_dssp HHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH----HTEEE---EE-SS-G-GGC-C--
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH----cCCCE---EE-cC-H-HHh-C--
Confidence 44677899999999999986 899999999873 5999999 8888888765 35432 12 24 2 222 2
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+|+||-....+ .+..+.+.|+++|+++.+...
T Consensus 198 -~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~g~~ 231 (315)
T 3goh_A 198 -QKYFAIFDAVNSQ--NAAALVPSLKANGHIICIQDR 231 (315)
T ss_dssp -SCEEEEECC---------TTGGGEEEEEEEEEECCC
T ss_pred -CCccEEEECCCch--hHHHHHHHhcCCCEEEEEeCC
Confidence 6899977544433 347788999999999987543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00023 Score=63.39 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=69.2
Q ss_pred HhcCCCCCC-EEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 102 MYLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~-~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++++++ +||..|+ |. |.++.++++.. +.+|++++.+++.++.+++ .|.+..++ ..+.. . .....
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~--~~~~~-~-~~~~~ 208 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANRILS--RDEFA-E-SRPLE 208 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSEEEE--GGGSS-C-CCSSC
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEe--cCCHH-H-HHhhc
Confidence 345566632 4999997 55 89999999986 3599999999999888875 46543221 11211 1 22222
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+||-....+ .++.+.+.|+++|+++.+..
T Consensus 209 ~~~~d~v~d~~g~~--~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 209 KQLWAGAIDTVGDK--VLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp CCCEEEEEESSCHH--HHHHHHHTEEEEEEEEECCC
T ss_pred CCCccEEEECCCcH--HHHHHHHHHhcCCEEEEEec
Confidence 25799977544433 88999999999999998753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.30 E-value=8e-05 Score=66.94 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred HHHhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC--
Q 021550 100 VIMYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-- 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~-- 175 (311)
+...+++++|++||..|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. ++ |.....+.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~---~~--~~~~~~~~~~ 204 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAY---VI--DTSTAPLYET 204 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE---EE--ETTTSCHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcE---EE--eCCcccHHHH
Confidence 3466789999999999997 388888899887 3699999999998888875 35432 11 22211111
Q ss_pred --Cc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 --DE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 --~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. ....+|+||-....+ .+..+.+.|+++|+++++..
T Consensus 205 ~~~~~~~~g~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 205 VMELTNGIGADAAIDSIGGP--DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp HHHHTTTSCEEEEEESSCHH--HHHHHHHTEEEEEEEEECCC
T ss_pred HHHHhCCCCCcEEEECCCCh--hHHHHHHHhcCCCEEEEEee
Confidence 00 114799987655543 23455689999999998753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=64.97 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=69.7
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC-
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF- 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~- 178 (311)
..+++++|++||..|+ |. |..+..+++.. +.+|++++.+++.++.+++ .|.+..++.. .+..+ .+.+..
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~-~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAK-AVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHH-HHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHH-HHHHHhC
Confidence 5678899999999998 54 88999999986 4699999999998887775 3543211111 11110 010001
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+||-....+ .+..+.+.|+++|+++++..
T Consensus 225 ~~g~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 225 GAGVDMVVDPIGGP--AFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp TSCEEEEEESCC----CHHHHHHTEEEEEEEEEC--
T ss_pred CCCceEEEECCchh--HHHHHHHhhcCCCEEEEEEc
Confidence 13699988666553 68899999999999998753
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00037 Score=62.18 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=68.8
Q ss_pred HhcCCCCCC-EEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 102 MYLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~-~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++++|+ +||..|+ |. |.++.++++..+ .+|++++.+++.++.+++ .|.+..++....+ . .......
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~-~~~~~~~ 213 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-A-ERIRPLD 213 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSEEEECC-----------CC
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-H-HHHHHhc
Confidence 345788886 8999997 54 889999999863 689999999888887764 4554322221111 1 1111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+||-.... ..+..+.+.|+++|+++++..
T Consensus 214 ~~~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 214 KQRWAAAVDPVGG--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp SCCEEEEEECSTT--TTHHHHHHTEEEEEEEEECSC
T ss_pred CCcccEEEECCcH--HHHHHHHHhhccCCEEEEEee
Confidence 1579998765554 378899999999999998753
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00031 Score=63.98 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--CCCC
Q 021550 106 LVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~--~~~~ 181 (311)
+.+|++||..| +|. |..+.++++.. +.+|++++ +++.++.++ ..|.+. ++ |..+..+.+. ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~~---v~--~~~~~~~~~~~~~~~g 248 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGADD---VI--DYKSGSVEEQLKSLKP 248 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCSE---EE--ETTSSCHHHHHHTSCC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCCE---EE--ECCchHHHHHHhhcCC
Confidence 88999999999 565 88999999986 36899988 677666664 346442 11 2211111000 0146
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+|+||-....+...+..+.+.|+++|+++.+....
T Consensus 249 ~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~ 283 (375)
T 2vn8_A 249 FDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF 283 (375)
T ss_dssp BSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSH
T ss_pred CCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCc
Confidence 99988776666456788899999999999886543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00045 Score=61.68 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=70.2
Q ss_pred hcCCCCCC-EEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 103 YLELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 103 ~~~~~~g~-~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
..++.+|+ +||..|+ |. |..+.++++..+ .+|++++.+++.++.+++ .|.+..++....+ . ........
T Consensus 144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~-~-~~~~~~~~ 215 (330)
T 1tt7_A 144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASEVISREDVY-D-GTLKALSK 215 (330)
T ss_dssp HTTCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSEEEEHHHHC-S-SCCCSSCC
T ss_pred hcCcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcEEEECCCch-H-HHHHHhhc
Confidence 45788886 9999997 55 888999999874 579999999888887764 3544322211111 1 11111112
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+||-.... ..+..+.+.|+++|+++++..
T Consensus 216 ~~~d~vid~~g~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 216 QQWQGAVDPVGG--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp CCEEEEEESCCT--HHHHHHHTTEEEEEEEEECCC
T ss_pred CCccEEEECCcH--HHHHHHHHhhcCCCEEEEEec
Confidence 569998766655 378999999999999998753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=65.02 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=70.5
Q ss_pred HhcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----
Q 021550 102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP---- 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---- 175 (311)
..+++++|++||..| +|. |..+..+++.. +.+|++++.+++.++.+++ .|.+. ++ |.....+.
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---~~--~~~~~~~~~~~~ 229 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKR---GI--NYRSEDFAAVIK 229 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSE---EE--ETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE---EE--eCCchHHHHHHH
Confidence 557789999999994 454 88888999886 4689999999999888875 35432 11 22211111
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.....+|+||-....+ .+..+.+.|+++|.++++..
T Consensus 230 ~~~~~g~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 230 AETGQGVDIILDMIGAA--YFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp HHHSSCEEEEEESCCGG--GHHHHHHTEEEEEEEEECCC
T ss_pred HHhCCCceEEEECCCHH--HHHHHHHHhccCCEEEEEEe
Confidence 00125799988666543 78889999999999998653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0013 Score=60.00 Aligned_cols=74 Identities=18% Similarity=0.080 Sum_probs=45.3
Q ss_pred CCEEEEEcccccHHHHHHHHHh----------------CCCcEEEEEeCC-----------HHHHHHHHHHHHhcCCCCc
Q 021550 109 GCLVLESGTGSGSLTTSLARAV----------------APTGHVYTFDFH-----------EQRAASAREDFERTGVSSF 161 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~----------------~~~~~v~~vD~~-----------~~~~~~a~~~~~~~g~~~~ 161 (311)
.-+|+|+||++|..|+.+...+ .|...|+.-|+. +.+.+.+++ ..|....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 4689999999999998877651 145677888876 333333222 1221111
Q ss_pred EEEEEecC---CCCCCCCcCCCCccEEEec
Q 021550 162 VTVGVRDI---QGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 162 v~~~~~D~---~~~~~~~~~~~~~D~V~~d 188 (311)
-.+..+.. ....++. +++|+|+++
T Consensus 130 ~~f~~gvpgSFy~rlfp~---~S~d~v~Ss 156 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPE---ESMHFLHSC 156 (384)
T ss_dssp SEEEEECCSCTTSCCSCT---TCEEEEEEE
T ss_pred ceEEEecchhhhhccCCC---CceEEEEec
Confidence 24444433 3355676 899999864
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=62.78 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=69.4
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----C
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----D 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~ 176 (311)
.+++++|++||..|+ | .|..+..+++.. +.+|++++.+++.++.+++ .|... + .|..+..+. +
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~~---~--~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQ---V--INYREEDLVERLKE 203 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSE---E--EETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCE---E--EECCCccHHHHHHH
Confidence 568899999999993 4 378888888876 3699999999988887765 24331 1 132211110 0
Q ss_pred -cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 -EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 -~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|++|.+.. ...++.+.+.|+++|+++.+..
T Consensus 204 ~~~~~~~D~vi~~~g--~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG--RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC--GGGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc--hHHHHHHHHHhcCCCEEEEEec
Confidence 00146999887665 4578999999999999998753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=63.70 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=70.5
Q ss_pred HhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCC---
Q 021550 102 MYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFP--- 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~--- 175 (311)
..+++++|++||..|+ | .|..+..+++.. +.+|++++.+++.++.+++ ..|... +. |..+. .+.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~---~~--d~~~~~~~~~~~ 218 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDD---AF--NYKEESDLTAAL 218 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSE---EE--ETTSCSCSHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCce---EE--ecCCHHHHHHHH
Confidence 5578899999999997 4 388888888886 3699999999988877753 235432 11 32211 111
Q ss_pred -CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 -DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 -~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+.+|+||.+... ..+..+.+.|+++|+++++..
T Consensus 219 ~~~~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 219 KRCFPNGIDIYFENVGG--KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp HHHCTTCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred HHHhCCCCcEEEECCCH--HHHHHHHHHHhcCCEEEEEcc
Confidence 0011469998866654 478999999999999998753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00036 Score=62.71 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=68.1
Q ss_pred HhcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cC
Q 021550 102 MYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~ 178 (311)
..+++++|++||.+| +|. |.++..+++.. +.+|+++ .+++.++.+++ .|.+. +. ...|.. ..+.+ ..
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~-~~~~~~~~ 213 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPE-DYAAEHTA 213 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHH-HHHHHHHT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHH-HHHHHHhc
Confidence 567889999999999 455 88999999986 4689999 88888877764 35432 21 000110 00000 01
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+|+||-.... ..+..+.+.|+++|.++++.
T Consensus 214 ~~g~D~vid~~g~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 214 GQGFDLVYDTLGG--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp TSCEEEEEESSCT--HHHHHHHHHEEEEEEEEESC
T ss_pred CCCceEEEECCCc--HHHHHHHHHHhcCCeEEEEc
Confidence 1469998766554 47889999999999999864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00045 Score=62.18 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=69.1
Q ss_pred HhcCCC------CCCEEEEE-cccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 102 MYLELV------PGCLVLES-GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 102 ~~~~~~------~g~~VLdi-G~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
..+++. +|++||.. |+|. |.++..+++.. +++|++++.+++.++.+++ .|.+..+.. ..|..+ .
T Consensus 138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~-~~~~~~-~ 209 (346)
T 3fbg_A 138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADIVLNH-KESLLN-Q 209 (346)
T ss_dssp TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSEEECT-TSCHHH-H
T ss_pred HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEEEC-CccHHH-H
Confidence 456777 89999999 5776 88999999986 3699999999998888875 354321110 001110 0
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+.....+|+||-.. .....++.+.+.|+++|+++.+.
T Consensus 210 ~~~~~~~g~Dvv~d~~-g~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 210 FKTQGIELVDYVFCTF-NTDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp HHHHTCCCEEEEEESS-CHHHHHHHHHHHEEEEEEEEESS
T ss_pred HHHhCCCCccEEEECC-CchHHHHHHHHHhccCCEEEEEC
Confidence 1111114799876444 34457789999999999998753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=62.40 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=69.4
Q ss_pred HhcCCCCCCEEEEEcc--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCC----
Q 021550 102 MYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF---- 174 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~---- 174 (311)
..+++.+|++||..|+ |.|..+..+++.. +.+|++++.+++.++.+++ .|... ..|..+ ..+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~-----~~d~~~~~~~~~~~ 207 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDA-----AFNYKTVNSLEEAL 207 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE-----EEETTSCSCHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcE-----EEecCCHHHHHHHH
Confidence 5568899999999998 3477888888875 4699999999988877743 34321 123322 111
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+.+|++|.+... ..+..+.+.|+++|+++++..
T Consensus 208 ~~~~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 208 KKASPDGYDCYFDNVGG--EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHHCTTCEEEEEESSCH--HHHHHHHTTEEEEEEEEECCC
T ss_pred HHHhCCCCeEEEECCCh--HHHHHHHHHHhcCCEEEEEec
Confidence 10011469998877664 368899999999999998753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.001 Score=59.08 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=68.5
Q ss_pred HHHhcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC
Q 021550 100 VIMYLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~ 176 (311)
.+..+++++|++||..| +|. |.++.++++.. +.+|++++ +++..+.+++ .|.+. ++ |..+.. +.+
T Consensus 144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~~----lGa~~---~i--~~~~~~~~~~ 211 (321)
T 3tqh_A 144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLKA----LGAEQ---CI--NYHEEDFLLA 211 (321)
T ss_dssp HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHHH----HTCSE---EE--ETTTSCHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHHH----cCCCE---EE--eCCCcchhhh
Confidence 44778899999999997 776 99999999986 35898887 5555665553 56543 11 222111 111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.. ..+|+||-....+ .+..+.+.|+++|+++.+...
T Consensus 212 ~~-~g~D~v~d~~g~~--~~~~~~~~l~~~G~iv~~g~~ 247 (321)
T 3tqh_A 212 IS-TPVDAVIDLVGGD--VGIQSIDCLKETGCIVSVPTI 247 (321)
T ss_dssp CC-SCEEEEEESSCHH--HHHHHGGGEEEEEEEEECCST
T ss_pred hc-cCCCEEEECCCcH--HHHHHHHhccCCCEEEEeCCC
Confidence 11 4699977554443 348899999999999987543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=62.62 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=69.2
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----C
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF----P 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~ 175 (311)
..+++.+|++||..|+ |. |..+..+++.. +.+|++++.+++.++.+++ .|.+. + .|..+..+ .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~~---~--~~~~~~~~~~~~~ 224 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAAA---G--FNYKKEDFSEATL 224 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---E--EETTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE---E--EecCChHHHHHHH
Confidence 4567899999999984 43 78888888875 4699999999998888753 34331 1 12221111 0
Q ss_pred CcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.. ...+|++|-+...+ .+..+.+.|+++|.++++..
T Consensus 225 ~~~~~~~~d~vi~~~G~~--~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 225 KFTKGAGVNLILDCIGGS--YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp HHTTTSCEEEEEESSCGG--GHHHHHHHEEEEEEEEECCC
T ss_pred HHhcCCCceEEEECCCch--HHHHHHHhccCCCEEEEEec
Confidence 000 14699988766654 68888999999999998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00064 Score=59.89 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=67.1
Q ss_pred hcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCC
Q 021550 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~ 179 (311)
.. +++|++||..|+ |. |..+..+++.. +.+|++++.+++.++.+++ .|.+. +. |..+ ..+.+..
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~--~~~~~~~~~~~~- 187 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE---AA--TYAEVPERAKAW- 187 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE---EE--EGGGHHHHHHHT-
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCE---EE--ECCcchhHHHHh-
Confidence 45 889999999998 44 88888999886 3699999999988887754 45432 11 2211 0111101
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+||- ... ..+..+.+.|+++|+++.+..
T Consensus 188 ~~~d~vid-~g~--~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 188 GGLDLVLE-VRG--KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp TSEEEEEE-CSC--TTHHHHHTTEEEEEEEEEC--
T ss_pred cCceEEEE-CCH--HHHHHHHHhhccCCEEEEEeC
Confidence 46999887 655 578999999999999987653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0028 Score=58.42 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHh--c-CCCCcEEEEEe
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLA-RAVAPTGHVYTFDFHEQRAASAREDFER--T-GVSSFVTVGVR 167 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~-g~~~~v~~~~~ 167 (311)
.+.++..|+|+|++.|..+..++ +..++.++|+++|.++...+..++|+.. + +.+.++.++..
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 35789999999999999999988 4443348999999999999999999987 2 33134666543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00056 Score=61.16 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=69.7
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----C
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----D 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~ 176 (311)
.+++++|++||..|+ | .|..+..+++.. +.+|++++.+++.++.+++ .|.+. + .|..+..+. +
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~---~--~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHH---T--INYSTQDFAEVVRE 208 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSE---E--EETTTSCHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCE---E--EECCCHHHHHHHHH
Confidence 567899999999995 4 488888888875 4699999999988887764 34331 1 133221110 0
Q ss_pred c-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 E-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. ....+|+||-+... ..++.+.+.|+++|+++.+..
T Consensus 209 ~~~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK--DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSCT--TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCcH--HHHHHHHHhhccCCEEEEEec
Confidence 0 01469998876655 578999999999999998753
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00051 Score=61.98 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=68.9
Q ss_pred HhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----
Q 021550 102 MYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP---- 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~---- 175 (311)
..+++++|++||..|+ | .|..+..+++.. +.+|++++.+++.++.+++ .|... + .|..+..+.
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---~--~d~~~~~~~~~~~ 232 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHE---V--FNHREVNYIDKIK 232 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---E--EETTSTTHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCE---E--EeCCCchHHHHHH
Confidence 3578899999999997 4 378888888875 4689999999998876653 35432 1 232221110
Q ss_pred Cc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. ....+|+||-+... ..+..+.+.|+++|+++++..
T Consensus 233 ~~~~~~~~D~vi~~~G~--~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 233 KYVGEKGIDIIIEMLAN--VNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp HHHCTTCEEEEEESCHH--HHHHHHHHHEEEEEEEEECCC
T ss_pred HHcCCCCcEEEEECCCh--HHHHHHHHhccCCCEEEEEec
Confidence 00 01369998866554 367888999999999998753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0011 Score=59.85 Aligned_cols=102 Identities=10% Similarity=0.128 Sum_probs=70.0
Q ss_pred HhcCCCCC--CEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---
Q 021550 102 MYLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--- 174 (311)
Q Consensus 102 ~~~~~~~g--~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~--- 174 (311)
..+++++| ++||..|+ |. |..+..+++..+ ..+|++++.+++.++.+++. .|... + .|..+..+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~~~~~~~~~~~---~g~~~---~--~d~~~~~~~~~ 222 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGTHEKCILLTSE---LGFDA---A--INYKKDNVAEQ 222 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT---SCCSE---E--EETTTSCHHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHH---cCCce---E--EecCchHHHHH
Confidence 66789999 99999998 43 778888888752 23999999998887776542 34431 1 23322111
Q ss_pred -CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 -PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 -~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+...+.+|++|.+... ..+..+.+.|+++|+++++..
T Consensus 223 ~~~~~~~~~d~vi~~~G~--~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNVGG--NISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HHHHCTTCEEEEEESCCH--HHHHHHHHTEEEEEEEEECCC
T ss_pred HHHhcCCCCCEEEECCCH--HHHHHHHHHhccCcEEEEECC
Confidence 10011369998866653 578999999999999998753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0014 Score=59.60 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=64.0
Q ss_pred CCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+|++||..|+ | .|.++.++++.. +.+|+++. +++.++.+++ .|.+..++....|+.+ .+.+...+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~-~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQ-TIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHH-HHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHH-HHHHHccCCccE
Confidence 88999999999 4 489999999986 35888875 7888777664 5654312111111110 011111245999
Q ss_pred EEecCCChhhHHHHHHhcc-cCCcEEEEec
Q 021550 185 IFLDLPQPWLAIPSAKKML-KQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~L-kpgG~lv~~~ 213 (311)
||-.... ...+..+.+.| +++|+++.+.
T Consensus 235 v~d~~g~-~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 235 ALDCITN-VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEESSCS-HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEECCCc-hHHHHHHHHHhhcCCCEEEEEe
Confidence 7755444 34678888889 6999999875
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=59.94 Aligned_cols=106 Identities=11% Similarity=0.213 Sum_probs=63.0
Q ss_pred cCCCCC-CEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE---ecCCCCCCCCc
Q 021550 104 LELVPG-CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV---RDIQGQGFPDE 177 (311)
Q Consensus 104 ~~~~~g-~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~D~~~~~~~~~ 177 (311)
+++++| ++||..|+ |. |.++.++++..+ .+++++..+++.++..++.+...|.+..++... .|+.+ .+.+.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~-~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGP-TIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHH-HHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHH-HHHHH
Confidence 578999 99999997 65 889999999873 577777654433111112223456543222111 12111 11110
Q ss_pred ---CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 ---FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ---~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+|+||-....+ ... .+.+.|+++|+++.+..
T Consensus 239 t~~~~~g~Dvvid~~G~~-~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGGK-SST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp HHHHTCCEEEEEESSCHH-HHH-HHHHTSCTTCEEEECCC
T ss_pred hhccCCCceEEEECCCch-hHH-HHHHHhccCCEEEEecC
Confidence 014699987555443 233 77899999999998753
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=59.43 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=65.0
Q ss_pred CEEEEEcccccHHHHHHHHH---------------hCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE---ecCCC
Q 021550 110 CLVLESGTGSGSLTTSLARA---------------VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV---RDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~---------------~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~D~~~ 171 (311)
-+|+|+||++|..++.+... -.|...|+..|+.......+-+.+..........+.. +.+..
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 57999999999877654433 1345788899998887776665543211000123333 44444
Q ss_pred CCCCCcCCCCccEEEecCCChh--------------------------------------hHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW--------------------------------------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~--------------------------------------~~l~~~~~~LkpgG~lv~~ 212 (311)
..++. +++|+|+++..-.| .+|+...+.|+|||++++.
T Consensus 133 rlfp~---~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 133 RLFPR---NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCT---TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred ccCCC---CceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 66777 89999985322111 2377889999999999874
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.007 Score=54.50 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=61.2
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHH---HHHHHHHHHHhcCCCCcEEEEEecCCC-CCCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQ---RAASAREDFERTGVSSFVTVGVRDIQG-QGFP 175 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~---~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~ 175 (311)
..+++.+|++||..|+ |. |.++.++++..+ ...+..++.++. ..+.++ ..|.+..++....+... ..+.
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRPDIQKLSDRLK----SLGAEHVITEEELRRPEMKNFF 235 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEECCCSCHHHHHHHHH----HTTCSEEEEHHHHHSGGGGGTT
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcC-CEEEEEecCccchHHHHHHHH----hcCCcEEEecCcchHHHHHHHH
Confidence 4468899999999997 54 889999999873 234445555432 334443 45654322211001110 0111
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.. .+.+|+||-....+ .+..+.+.|+++|+++.+.
T Consensus 236 ~~-~~~~Dvvid~~g~~--~~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 236 KD-MPQPRLALNCVGGK--SSTELLRQLARGGTMVTYG 270 (357)
T ss_dssp SS-SCCCSEEEESSCHH--HHHHHHTTSCTTCEEEECC
T ss_pred hC-CCCceEEEECCCcH--HHHHHHHhhCCCCEEEEEe
Confidence 10 02489977554433 3356889999999999874
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00065 Score=61.19 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=60.4
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.+++++|++||..|+ |. |.++.++++..+ ..+|++++ +++..+.++ .|.+..++ ...|..+ .+.+...
T Consensus 136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~-~~~~~~~ 206 (349)
T 4a27_A 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQ-EVKRISA 206 (349)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHH-HHHHHCT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHH-HHHHhcC
Confidence 5578999999999998 54 778888887753 57899888 555444443 35433121 1111110 1111112
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+||-....+ .+..+.+.|+++|+++++..
T Consensus 207 ~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 207 EGVDIVLDCLCGD--NTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp TCEEEEEEECC---------CTTEEEEEEEEEEC-
T ss_pred CCceEEEECCCch--hHHHHHHHhhcCCEEEEECC
Confidence 5799988555443 34788999999999998764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.012 Score=50.59 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCEEEEEcccccHHHHHHHHH---h---CCCcEEEEEe-----CCH----------------------HHHHHH---HHH
Q 021550 109 GCLVLESGTGSGSLTTSLARA---V---APTGHVYTFD-----FHE----------------------QRAASA---RED 152 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~---~---~~~~~v~~vD-----~~~----------------------~~~~~a---~~~ 152 (311)
...|+|+|+-.|..+..++.. + ++..+|+++| ..+ +.++.+ .++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 359999999999988776643 2 3468999998 221 111211 112
Q ss_pred HHhcCC-CCcEEEEEecCCCCCCCC----cCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEE
Q 021550 153 FERTGV-SSFVTVGVRDIQGQGFPD----EFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 153 ~~~~g~-~~~v~~~~~D~~~~~~~~----~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~ 211 (311)
.+..+. .++++++.+++.+ .++. .....+|+|++|.... ...++.+...|+|||.|++
T Consensus 150 ~~~~g~~~~~i~li~G~~~d-TL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRE-TVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHH-HHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHH-HHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEE
Confidence 223454 3669999999874 2211 1115799999998652 2468899999999999997
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=52.74 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=71.1
Q ss_pred CEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|+|+.||.|++++.+..+ +- ...|+++|+++.+++..+.|+.. ..+..+|+.+..........+|+|+.+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEc
Confidence 57999999999999998877 11 24789999999999999988532 345678887421111000258999998
Q ss_pred CCChh---------------hHHH---HHHhccc--CCcEEEEecCCH---HHHHHHHHHHhh
Q 021550 189 LPQPW---------------LAIP---SAKKMLK--QDGILCSFSPCI---EQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~---------------~~l~---~~~~~Lk--pgG~lv~~~~~~---~~~~~~~~~l~~ 228 (311)
+|+.. .++. .+...++ |.-.++=-++.. ..+..+.+.|.+
T Consensus 76 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~ 138 (343)
T 1g55_A 76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIEN 138 (343)
T ss_dssp CC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHH
T ss_pred CCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 88321 1222 4455566 765444224432 345666677765
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=62.21 Aligned_cols=119 Identities=23% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh------CC-----CcEEEEEeC---CHHHHHHHH-----------HHHHhc-----C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDF---HEQRAASAR-----------EDFERT-----G 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~------~~-----~~~v~~vD~---~~~~~~~a~-----------~~~~~~-----g 157 (311)
+.-+|+|+|.|+|...+.+.+.+ .| ..+++++|. +.+-+..|- +.+..+ |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999999888776654 11 157899998 444443322 222221 1
Q ss_pred -----CC---CcEEEEEecCCCCCCCCc---CCCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 158 -----VS---SFVTVGVRDIQGQGFPDE---FSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 158 -----~~---~~v~~~~~D~~~~~~~~~---~~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
+. -.+++..+|+.+ .++.. ....+|++|+|...| .+++..+.+.++|||.+..|+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~-~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~--- 213 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNT-LLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA--- 213 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHH-HGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC---
T ss_pred ceEEEecCCcEEEEEEccCHHH-HHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc---
Confidence 11 146677888864 22211 126799999986533 35789999999999999977654
Q ss_pred HHHHHHHHhh-cCc
Q 021550 219 VQRSCESLRL-NFT 231 (311)
Q Consensus 219 ~~~~~~~l~~-~f~ 231 (311)
..+...|.+ +|.
T Consensus 214 -~~vr~~l~~aGf~ 226 (689)
T 3pvc_A 214 -GFVRRGLQQAGFN 226 (689)
T ss_dssp -HHHHHHHHHTTCE
T ss_pred -HHHHHHHHhCCeE
Confidence 234455555 664
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0087 Score=54.46 Aligned_cols=112 Identities=15% Similarity=0.040 Sum_probs=73.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-----CCCCccE
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLADS 184 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-----~~~~~D~ 184 (311)
.+|+|+.||.|++++.+.++ +...+.++|+++.+++..+.|+. + ..++.+|+.+....+. ....+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----R-SLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----T-SEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----C-CceEecChhhcCHHHHHhhcccCCCeeE
Confidence 48999999999999998877 34567899999999988887742 2 5667788875221100 0157999
Q ss_pred EEecCCChh--------------hH---HHHHHhcccCCcEEEEecCCH------HHHHHHHHHHhh-cC
Q 021550 185 IFLDLPQPW--------------LA---IPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF 230 (311)
Q Consensus 185 V~~d~~~~~--------------~~---l~~~~~~LkpgG~lv~~~~~~------~~~~~~~~~l~~-~f 230 (311)
|+.++|+.. .+ +-.+...++|.-.++=-++.. ..+..+. .|.+ +|
T Consensus 75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY 143 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDY 143 (376)
T ss_dssp EEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTE
T ss_pred EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCC
Confidence 999888431 12 334556678865555334332 2345555 6655 44
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.029 Score=43.13 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
..+|+.+|+|. |......+... +..|+++|.+++.++.+++ .+ +.+..+|..+.. +.......+|+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEE
Confidence 35799999986 55554444442 4789999999998877664 23 667888886521 1111114689999
Q ss_pred ecCCChhhH--HHHHHhcccCCcEEEEecCCHHHH
Q 021550 187 LDLPQPWLA--IPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 187 ~d~~~~~~~--l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
+..++.... +-...+.+.|+..+++.....+..
T Consensus 77 ~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~ 111 (140)
T 3fwz_A 77 LTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEV 111 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHH
T ss_pred EECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence 888876532 334566677888888766655544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=52.59 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=71.4
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+.+|+|+.||.|++++.+..+ +...++++|+++.+++..+.|+... . .+|+.+..... . ..+|+|+.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~-~-~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT-I-PDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG-S-CCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh-C-CCCCEEEEC
Confidence 569999999999999988776 4567889999999999998886431 1 47776422111 1 358999987
Q ss_pred CCChh------------------hHHHHHHhcccCCcEEEEecCCH------HHHHHHHHHHhh
Q 021550 189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~------~~~~~~~~~l~~ 228 (311)
+|+.. ..+-.+.+.++|.-.++=-++.. ..+..+.+.|.+
T Consensus 79 pPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~ 142 (327)
T 2c7p_A 79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNE 142 (327)
T ss_dssp CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHH
T ss_pred CCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHh
Confidence 77321 12334555678865544334322 245667777766
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.037 Score=54.20 Aligned_cols=119 Identities=24% Similarity=0.263 Sum_probs=74.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh------CC-----CcEEEEEeC---CHHHHHHHHH-----------HHHhcCC----
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDF---HEQRAASARE-----------DFERTGV---- 158 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~------~~-----~~~v~~vD~---~~~~~~~a~~-----------~~~~~g~---- 158 (311)
+.-+|||+|-|+|...+...+.+ .| .-+++++|. +++-+..+-. ....+..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999999877766553 11 246889998 6666553322 2222211
Q ss_pred ---------CCcEEEEEecCCCCCCCCc---CCCCccEEEecCCCh------h--hHHHHHHhcccCCcEEEEecCCHHH
Q 021550 159 ---------SSFVTVGVRDIQGQGFPDE---FSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 159 ---------~~~v~~~~~D~~~~~~~~~---~~~~~D~V~~d~~~~------~--~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
.-.+++..+|+.+ .++.. ....||++|+|...| | +++..+.+.++|||.+..|+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~-~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~~-- 222 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINE-LTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG-- 222 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHH-HGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCCH--
T ss_pred ceEEEecCCcEEEEEecCCHHH-HHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCcH--
Confidence 0124566677753 22211 125799999987543 2 57899999999999999877642
Q ss_pred HHHHHHHHhh-cCc
Q 021550 219 VQRSCESLRL-NFT 231 (311)
Q Consensus 219 ~~~~~~~l~~-~f~ 231 (311)
.+...|.+ +|.
T Consensus 223 --~vr~~L~~aGf~ 234 (676)
T 3ps9_A 223 --FVRRGLQDAGFT 234 (676)
T ss_dssp --HHHHHHHHHTCE
T ss_pred --HHHHHHHhCCeE
Confidence 34445555 664
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0013 Score=59.07 Aligned_cols=100 Identities=10% Similarity=0.108 Sum_probs=65.3
Q ss_pred HHHhcCCCCC-CEEEEE-cccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 100 VIMYLELVPG-CLVLES-GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g-~~VLdi-G~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
++..++ .++ .+||.. |+|. |..+.++++..+ ++|++++.+++.++.+++ .|.+. ++ |.....+.+
T Consensus 156 ~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----~Ga~~---~~--~~~~~~~~~ 223 (349)
T 3pi7_A 156 MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKD----IGAAH---VL--NEKAPDFEA 223 (349)
T ss_dssp HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHH----HTCSE---EE--ETTSTTHHH
T ss_pred HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCE---EE--ECCcHHHHH
Confidence 444455 566 577765 6665 888888998873 699999999998888864 35432 12 222111111
Q ss_pred ----cC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 ----EF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ----~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.. ...+|+||-....+ .+..+.+.|+++|+++++.
T Consensus 224 ~v~~~~~~~g~D~vid~~g~~--~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 224 TLREVMKAEQPRIFLDAVTGP--LASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HHHHHHHHHCCCEEEESSCHH--HHHHHHHHSCTTCEEEECC
T ss_pred HHHHHhcCCCCcEEEECCCCh--hHHHHHhhhcCCCEEEEEe
Confidence 00 13699987655443 4588899999999999875
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.02 Score=50.78 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHhcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE---QRAASAREDFERTG 157 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~g 157 (311)
.++... -.+|+.|||..||+|..+.++.+. +.+.+++|+++ ..++.+++++...+
T Consensus 234 ~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 234 RLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHh-CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 344444 378999999999999998887776 58999999999 99999999876544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0037 Score=69.80 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAP----TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGL 181 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~~~ 181 (311)
.|..+|||+|.|+|..+..+...+.. ...++..|+++.+.+.|+++++... +.....|... .++.+ ..
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~---~~ 1311 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSL---GK 1311 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC--------
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCC---Cc
Confidence 46789999999999988887777642 2367778999998888888776532 3332224332 12333 67
Q ss_pred ccEEEec-----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||+|+.. .++....+.++.++|+|||.+++...
T Consensus 1312 ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1312 ADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp CCEEEEECC--------------------CCEEEEEEC
T ss_pred eeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999853 23455689999999999999887643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.016 Score=51.56 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=45.2
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
.++... ..+|+.|||..||+|..+.+..+. +.+.+++|+++..++.+++++...+.
T Consensus 244 ~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 244 FFIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp HHHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred HHHHHh-CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 344443 478999999999999988776655 58999999999999999998766553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=66.19 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
...++++|++||..|+ |. |..++++++.. +++|++++.+++..+.+++.+...+....+.....++.+........
T Consensus 1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g 1738 (2512)
T 2vz8_A 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAG 1738 (2512)
T ss_dssp TTTCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTS
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCC
Confidence 4467899999999974 54 88999999986 46899999999888887765322343331211111111100010111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+|+-.. . ...+....+.|+++|+++.+.
T Consensus 1739 ~GvDvVld~~-g-~~~l~~~l~~L~~~Gr~V~iG 1770 (2512)
T 2vz8_A 1739 KGVDLVLNSL-A-EEKLQASVRCLAQHGRFLEIG 1770 (2512)
T ss_dssp CCEEEEEECC-C-HHHHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEECC-C-chHHHHHHHhcCCCcEEEEee
Confidence 4699977544 3 457899999999999998765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.083 Score=47.88 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=79.5
Q ss_pred HHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCC
Q 021550 99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~~ 176 (311)
++++.+. ...+.+||.++.+.|.+++.++.. .++.+.-|--.....+.|+..+++.. .+.+.. .. ...+
T Consensus 28 ~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~-~~~~- 98 (375)
T 4dcm_A 28 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLD--ST-ADYP- 98 (375)
T ss_dssp HHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TT-SCCC-
T ss_pred HHHHhhhhccCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cc-cccc-
Confidence 5666643 335678999999999999888643 33455445555667788998888864 244432 22 1223
Q ss_pred cCCCCccEEEecCCChhh----HHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhc
Q 021550 177 EFSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN 229 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~----~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 229 (311)
..+|+|++-+|.... .|..+...|++|+.+++......-.....+.+.+.
T Consensus 99 ---~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 99 ---QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp ---SSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred ---cCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 679999998886543 46778888999999987765544444555555543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.099 Score=41.89 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=60.3
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-CCCCccEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE-FSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~-~~~~~D~V 185 (311)
+.+|+.+|+|. |......+...+ +..|+++|.+++.++.+++ .| +.+..+|..+.. +... ....+|+|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 56899999875 554444444320 3579999999988776553 34 445667765311 1110 01468999
Q ss_pred EecCCChhhH--HHHHHhcccCCcEEEEecCCHHH
Q 021550 186 FLDLPQPWLA--IPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 186 ~~d~~~~~~~--l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
++..++.... +-...+.+.|.+.+++.....+.
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 144 (183)
T 3c85_A 110 LLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQ 144 (183)
T ss_dssp EECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHH
T ss_pred EEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 9877765432 23345556677788766554443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.04 Score=51.79 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..+|++|+.+|+|. |......++.++ .+|+++|.++...+.|++ .|. ++ .+..+ .+ ..+|+
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e-~l-----~~aDv 332 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMM----EGF----DV--VTVEE-AI-----GDADI 332 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC----EE--CCHHH-HG-----GGCSE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC----EE--ecHHH-HH-----hCCCE
Confidence 57899999999998 777777888763 699999999988776653 343 21 12211 11 45899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
|+...+....+-....+.|++||+++..+...
T Consensus 333 Vi~atgt~~~i~~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 333 VVTATGNKDIIMLEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp EEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred EEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence 99876654422236788899999999776543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0036 Score=62.67 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..++++|++||..|+ |. |..++++++.++ ++|++++.++ ..+.++ .+.+..++....|+.+.........
T Consensus 340 ~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~-k~~~l~-----lga~~v~~~~~~~~~~~i~~~t~g~ 411 (795)
T 3slk_A 340 LAGLRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASED-KWQAVE-----LSREHLASSRTCDFEQQFLGATGGR 411 (795)
T ss_dssp CTCCCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGG-GGGGSC-----SCGGGEECSSSSTHHHHHHHHSCSS
T ss_pred HhCCCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChH-Hhhhhh-----cChhheeecCChhHHHHHHHHcCCC
Confidence 457889999999995 54 899999999974 5899988654 222111 3332211111111110000001124
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+||-.... ..+...++.|+|+|+++.+..
T Consensus 412 GvDvVld~~gg--~~~~~~l~~l~~~Gr~v~iG~ 443 (795)
T 3slk_A 412 GVDVVLNSLAG--EFADASLRMLPRGGRFLELGK 443 (795)
T ss_dssp CCSEEEECCCT--TTTHHHHTSCTTCEEEEECCS
T ss_pred CeEEEEECCCc--HHHHHHHHHhcCCCEEEEecc
Confidence 79998765543 467999999999999998753
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.24 Score=43.73 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=71.5
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
.+|||+-||.|++++-+.++ +-..+.++|+++.+.+.-+.|. . -.+..+|+.+....+. ..+|+++..+
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~--~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEF--PKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGS--CCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhC--CcccEEEecC
Confidence 37999999999999887665 3456779999999888877763 2 2467789875322221 4689988776
Q ss_pred CCh--------------h-hH---HHHHHhcccCCcEEEEecCCH------HHHHHHHHHHhh
Q 021550 190 PQP--------------W-LA---IPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL 228 (311)
Q Consensus 190 ~~~--------------~-~~---l~~~~~~LkpgG~lv~~~~~~------~~~~~~~~~l~~ 228 (311)
|+. . .+ +-.+.+.++|.-.++=-++.. ..+..+.+.|.+
T Consensus 70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDN 132 (331)
T ss_dssp CGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHH
T ss_pred CCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhcc
Confidence 633 1 12 234556678875555444432 456667777766
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.24 Score=44.06 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=69.5
Q ss_pred CEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
-+++|+.||.|+++..+.++ +- ...|.++|+++.+.+.-+.|+.. ..+..+|+.+....+.....+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEec
Confidence 47999999999999988776 21 14578999999998888877532 335567776422111001368999877
Q ss_pred CCCh--------------h-hH---HHHHHhccc-CCcEEEEecCCHH---HHHHHHHHHhh
Q 021550 189 LPQP--------------W-LA---IPSAKKMLK-QDGILCSFSPCIE---QVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~--------------~-~~---l~~~~~~Lk-pgG~lv~~~~~~~---~~~~~~~~l~~ 228 (311)
+|+. . .+ +-.+.+.++ |.-.++=-++... ....+.+.|.+
T Consensus 77 pPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~ 138 (333)
T 4h0n_A 77 PPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKE 138 (333)
T ss_dssp CCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHH
T ss_pred CCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHh
Confidence 7632 1 12 334455565 7655554455432 35566666665
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.47 Score=35.97 Aligned_cols=99 Identities=10% Similarity=0.040 Sum_probs=58.2
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
..+|+.+|+|. |......+.. .+..|+++|.+++.++.+++ .+ +.+..+|..+.. +.......+|+|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEEE
Confidence 45799999975 4433333333 24689999999998776653 23 567788886521 1110114689999
Q ss_pred ecCCChhh--HHHHHHhcccCCcEEEEecCCHHH
Q 021550 187 LDLPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 187 ~d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
+..++... .+....+.+. ...+++.......
T Consensus 76 ~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~~~ 108 (141)
T 3llv_A 76 ITGSDDEFNLKILKALRSVS-DVYAIVRVSSPKK 108 (141)
T ss_dssp ECCSCHHHHHHHHHHHHHHC-CCCEEEEESCGGG
T ss_pred EecCCHHHHHHHHHHHHHhC-CceEEEEEcChhH
Confidence 88776532 2233344455 5566655554443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.11 Score=40.50 Aligned_cols=104 Identities=16% Similarity=0.008 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D 183 (311)
..++.+|+.+|+|. |......+... +..|+.+|.+++.++.++. ..+ ..+..+|..... +.......+|
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~~~~~ad 86 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKECGMEKAD 86 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTTTGGGCS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHcCcccCC
Confidence 35678999999876 65555555443 4689999999876554321 112 345556654210 1110014689
Q ss_pred EEEecCCChhh--HHHHHHhcccCCcEEEEecCCHHH
Q 021550 184 SIFLDLPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 184 ~V~~d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
+||...+.+.. .+..+.+.+.+...++........
T Consensus 87 ~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~ 123 (155)
T 2g1u_A 87 MVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEK 123 (155)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGG
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 99988776542 233344445555666665554443
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.0037 Score=56.92 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHhcCCCCCCEEEEE--cccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 021550 100 VIMYLELVPGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160 (311)
Q Consensus 100 i~~~~~~~~g~~VLdi--G~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~ 160 (311)
++..+. .+|++||.+ |+|. |.++.++++..+ .+|++++.+++.++.+++ .|.+.
T Consensus 163 ~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~ 219 (379)
T 3iup_A 163 MVETMR-LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKA----QGAVH 219 (379)
T ss_dssp HHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHH----TTCSC
T ss_pred HHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh----CCCcE
Confidence 334444 789999999 5554 778888888873 589999999999888874 56544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.3 Score=35.40 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V 185 (311)
.+.+|+.+|+|. |......+... +..+|+.+|.+++.++.+. ..+ +.+...|..+. .+.... ..+|+|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~----~~~----~~~~~~d~~~~~~~~~~~-~~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLN----RMG----VATKQVDAKDEAGLAKAL-GGFDAV 73 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHH----TTT----CEEEECCTTCHHHHHHHT-TTCSEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHH----hCC----CcEEEecCCCHHHHHHHH-cCCCEE
Confidence 356899999854 33333333332 2368999999998776554 122 56677777541 111101 368999
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
|...+... ...-+...++.|...+.++........+
T Consensus 74 i~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 109 (118)
T 3ic5_A 74 ISAAPFFL-TPIIAKAAKAAGAHYFDLTEDVAATNAV 109 (118)
T ss_dssp EECSCGGG-HHHHHHHHHHTTCEEECCCSCHHHHHHH
T ss_pred EECCCchh-hHHHHHHHHHhCCCEEEecCcHHHHHHH
Confidence 88765332 2233333345566666566655544444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.057 Score=49.01 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++.+|+.+|+|. |..+..++..++ .+|+++|.+++.++.+++.+ +.. +.....+.. .+.+.. ..+|+|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~--~l~~~l-~~aDvVi 236 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAY--ELEGAV-KRADLVI 236 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHH--HHHHHH-HHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHH--HHHHHH-cCCCEEE
Confidence 578999999987 777777777763 58999999999887776432 322 111111110 011100 3579998
Q ss_pred ecCCChh-----hHHHHHHhcccCCcEEEEec
Q 021550 187 LDLPQPW-----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 187 ~d~~~~~-----~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+.+. .+.+.+.+.|+|||.++..+
T Consensus 237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred ECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 7543322 23567788899999998654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.066 Score=48.27 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
+.+|+.+|+|. |..+..++..++ .+|+.+|.+++.++.+++..... +.....+.. .+.+.. ..+|+||.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~~-----~~~~~~~~~--~~~~~~-~~~DvVI~ 236 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSR-----VELLYSNSA--EIETAV-AEADLLIG 236 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGG-----SEEEECCHH--HHHHHH-HTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCce-----eEeeeCCHH--HHHHHH-cCCCEEEE
Confidence 48999999987 777777777763 49999999999888877654321 222211110 111100 25899886
Q ss_pred cCCChh-----hHHHHHHhcccCCcEEEEec
Q 021550 188 DLPQPW-----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 d~~~~~-----~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+.+. .+.+...+.|++||.++.++
T Consensus 237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 543322 12566788899999988654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.078 Score=47.92 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++.+|+.+|+|. |..+..++... +.+|+++|.+++.++.+.+. .+.. +.....+.. .+.+.. ..+|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~---~g~~--~~~~~~~~~--~l~~~~-~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDV---FGGR--VITLTATEA--NIKKSV-QHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---TTTS--EEEEECCHH--HHHHHH-HHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHh---cCce--EEEecCCHH--HHHHHH-hCCCEEE
Confidence 468999999976 66666677765 35999999999887766543 2322 222111111 111100 3589998
Q ss_pred ecCCChh-----hHHHHHHhcccCCcEEEEec
Q 021550 187 LDLPQPW-----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 187 ~d~~~~~-----~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+.+. .+.+.+.+.|++||.++..+
T Consensus 235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred ECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 7765432 13577888999999988655
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.19 Score=46.20 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
..+|+.+|+|. |......+... +..|+++|.+++.++.+++ .| +.++.+|+.+.. +....-..+|+|+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 46799999976 55555445442 4789999999999887763 34 556889987521 1111115689999
Q ss_pred ecCCChhhH--HHHHHhcccCCcEEEEe
Q 021550 187 LDLPQPWLA--IPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~~~~~~~--l~~~~~~LkpgG~lv~~ 212 (311)
+..++.... +-...+.+.|...+++-
T Consensus 74 v~~~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 74 NAIDDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp ECCSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ECCCChHHHHHHHHHHHHhCCCCeEEEE
Confidence 888776543 34556667788777763
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.39 Score=42.23 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=58.7
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|..||+|. |......+...+....|+++|.+++.++.+.+ .|... ....|..+... ...|+||+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~~~-----~~aDvVila 101 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKVED-----FSPDFVMLS 101 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGGGG-----GCCSEEEEC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHHhh-----ccCCEEEEe
Confidence 6899999886 44333333332222389999999988777653 34321 11222220011 458999998
Q ss_pred CCCh--hhHHHHHHhcccCCcEEEEecCCH
Q 021550 189 LPQP--WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 189 ~~~~--~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
.|.. ..++..+...++++..++-.+...
T Consensus 102 vp~~~~~~vl~~l~~~l~~~~iv~d~~Svk 131 (314)
T 3ggo_A 102 SPVRTFREIAKKLSYILSEDATVTDQGSVK 131 (314)
T ss_dssp SCGGGHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred CCHHHHHHHHHHHhhccCCCcEEEECCCCc
Confidence 7754 356778888899998877655443
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.094 Score=45.91 Aligned_cols=78 Identities=13% Similarity=-0.049 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~~~~D 183 (311)
.....+|+|+.||.|++++.+.++ |-... |+++|+++.+.+.-+.|.. + ..+..+|+.+....+. ..+.+|
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~-~~~~~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----G-KIMYVGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----T-CEEEECCGGGCCHHHHHHTCCCS
T ss_pred cCCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----C-CceeCCChHHccHHHhcccCCcC
Confidence 345669999999999999887765 21222 6899999998887776632 2 4567788875221110 003689
Q ss_pred EEEecCC
Q 021550 184 SIFLDLP 190 (311)
Q Consensus 184 ~V~~d~~ 190 (311)
+++..+|
T Consensus 86 ll~ggpP 92 (295)
T 2qrv_A 86 LVIGGSP 92 (295)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9987665
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.074 Score=47.31 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCC-CcEE-EEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAP-TGHV-YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~-~~~v-~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.-+++|+.||.|+++..+.++ +- ...+ .++|+++.+.+..+.|+... +..+|+.+....+.....+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEE
Confidence 358999999999999888765 21 2456 79999999999888886321 44677764221110002589998
Q ss_pred ecCC
Q 021550 187 LDLP 190 (311)
Q Consensus 187 ~d~~ 190 (311)
..+|
T Consensus 82 ggpP 85 (327)
T 3qv2_A 82 MSPP 85 (327)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7766
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.65 Score=34.74 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=54.3
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
+.+|+.+|+|. |......+... +..|+.+|.+++.++.+++. .+ +.+..+|..+.. +.......+|+|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 46899998865 44333333332 46899999998876655432 22 445666664311 1100014689999
Q ss_pred ecCCChh--hHHHHHHhcccCCcEEEEecCC
Q 021550 187 LDLPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~d~~~~~--~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+..+... ..+..+.+.+.++ .+++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~ 104 (140)
T 1lss_A 75 AVTGKEEVNLMSSLLAKSYGIN-KTIARISE 104 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCC-CEEEECSS
T ss_pred EeeCCchHHHHHHHHHHHcCCC-EEEEEecC
Confidence 8877653 2344555667775 45544433
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.67 Score=38.53 Aligned_cols=99 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V 185 (311)
....+|+.+|+ |..+..+++.+...+.|+++|.+++.++.++ .+ +.++.+|..+.. +....-..+|.|
T Consensus 7 ~~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a~i~~ad~v 75 (234)
T 2aef_A 7 AKSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----SG----ANFVHGDPTRVSDLEKANVRGARAV 75 (234)
T ss_dssp ---CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----TT----CEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred CCCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----cC----CeEEEcCCCCHHHHHhcCcchhcEE
Confidence 34568999987 5666777777644334889999988766543 22 678889887411 111001468999
Q ss_pred EecCCChhh--HHHHHHhcccCCcEEEEecCCH
Q 021550 186 FLDLPQPWL--AIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 186 ~~d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
++..++... .+....+.+.|+..+++.....
T Consensus 76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 76 IVDLESDSETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp EECCSCHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred EEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 987776542 3345566677877777654433
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.18 Score=44.61 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=39.1
Q ss_pred cEEEEEecCCC--CCCCCcCCCCccEEEecCCC-------------------hhhHHHHHHhcccCCcEEEEecCC
Q 021550 161 FVTVGVRDIQG--QGFPDEFSGLADSIFLDLPQ-------------------PWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 161 ~v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~-------------------~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...++++|+.. ..+++ ++||+|++|+|- ....+..+.++|+|||.+++....
T Consensus 14 ~~~ii~gD~~~~l~~l~~---~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPE---ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SEEEEESCHHHHGGGSCS---SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEeCcHHHHHhhCCC---CCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 37788999864 22444 789999999983 124678889999999999986543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.18 Score=44.04 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=38.1
Q ss_pred EEEEEecCCC--CCCCCcCCCCccEEEecCCCh-------------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~-------------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.++++|+.+ ..+++ ++||+||.|+|-. ..++.++.++|+|||.+++...
T Consensus 22 ~~i~~gD~~~~l~~l~~---~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 22 HRLHVGDAREVLASFPE---ASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp EEEEESCHHHHHTTSCT---TCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEECcHHHHHhhCCC---CceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 7899999875 23444 7899999998831 1256788999999999988755
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.59 E-value=1.9 Score=36.92 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=51.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-C-CC---C---cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-G-FP---D---EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~~---~---~~ 178 (311)
.+.+||..|++. +++.++++.+ ..+.+|+.++.+++..+.+.+.+...+-. .+.++..|+.+. . +. . ..
T Consensus 11 ~~k~vlITGas~-GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVTGGNK-GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC-SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 467888888765 4444444433 22579999999998887777766655433 488999999753 1 00 0 00
Q ss_pred CCCccEEEecCC
Q 021550 179 SGLADSIFLDLP 190 (311)
Q Consensus 179 ~~~~D~V~~d~~ 190 (311)
.+.+|++|.+..
T Consensus 89 ~g~iD~lv~nAg 100 (311)
T 3o26_A 89 FGKLDILVNNAG 100 (311)
T ss_dssp HSSCCEEEECCC
T ss_pred CCCCCEEEECCc
Confidence 146899987654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.76 Score=39.27 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG- 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~- 173 (311)
.+++||..|++.| ++..+++.+ ..+.+|+.+|.+ .+.++.+...+...+ ..+.++..|+.+..
T Consensus 9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence 4678998887664 333333333 125789999987 666666666655544 34888999987511
Q ss_pred CCCc------CCCCccEEEecCCC----------h------------hhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDE------FSGLADSIFLDLPQ----------P------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~------~~~~~D~V~~d~~~----------~------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+... ..+.+|++|.+... . ..+++.+.+.++.+|.++..+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 1000 01368998865321 1 1245667778888899887655
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.13 Score=47.08 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=59.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-------------CC-
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-------------GQ- 172 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-------------~~- 172 (311)
++.+|+.+|+|. |..+..+++.++ .+|+++|.++..++.+++ .|. .+...|.. ..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~----lGa----~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHH----TTC----EECCC--------CCHHHHHHSHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCC----EEEEecccccccccccchhhccHH
Confidence 578999999998 888888888874 589999999988777643 232 11111110 00
Q ss_pred -------CCCCcCCCCccEEEec--CC---ChhhHHHHHHhcccCCcEEEEec
Q 021550 173 -------GFPDEFSGLADSIFLD--LP---QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 173 -------~~~~~~~~~~D~V~~d--~~---~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+.+.. ..+|+||.. .| .+..+-..+.+.|+|||.++-++
T Consensus 241 ~~~~~~~~l~e~~-~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQA-KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHH-HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 011100 247998876 33 22222367888899999988654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.15 Score=46.24 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEE---------------ecCC
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGV---------------RDIQ 170 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~---------------~D~~ 170 (311)
++.+|+.+|+|. |..+..+++.++ .+|+.+|.++...+.+++ .|.... +.... .+..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~----~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~ 244 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES----LGGKFITVDDEAMKTAETAGGYAKEMGEEFR 244 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH----TTCEECCC-----------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEeecccccccccccccchhhcCHHHH
Confidence 688999999998 888888888874 579999999887776653 232110 00100 0000
Q ss_pred C---CCCCCcCCCCccEEEecC--CC---hhhHHHHHHhcccCCcEEEEec
Q 021550 171 G---QGFPDEFSGLADSIFLDL--PQ---PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 171 ~---~~~~~~~~~~~D~V~~d~--~~---~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ..+.+. -..+|+|+... |. +..+.....+.|+||+.++-.+
T Consensus 245 ~~~~~~l~~~-~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 245 KKQAEAVLKE-LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp CCHHHHHHHH-HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred hhhHHHHHHH-hCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 0 001110 13589998655 22 2222377888899999988654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.59 Score=39.55 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCCEEEEEcc-cccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-----
Q 021550 108 PGCLVLESGT-GSGS---LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE----- 177 (311)
Q Consensus 108 ~g~~VLdiG~-G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~----- 177 (311)
.+++||..|+ |+|. ++..+++. +.+|+.++.+++.++.+.+.+...+.. .+.++..|+.+.. +...
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE---GADVVISDYHERRLGETRDQLADLGLG-RVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTCSS-CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHHhcCCC-ceEEEEeCCCCHHHHHHHHHHHH
Confidence 5788999987 5543 22333333 578999999999888777776554433 4899999997511 1000
Q ss_pred -CCCCccEEEecC
Q 021550 178 -FSGLADSIFLDL 189 (311)
Q Consensus 178 -~~~~~D~V~~d~ 189 (311)
..+.+|++|.+.
T Consensus 97 ~~~g~id~li~~A 109 (266)
T 3o38_A 97 EKAGRLDVLVNNA 109 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCcEEEECC
Confidence 014689988654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.53 Score=41.35 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.+.+||..|+++| ++.++++.+ ..+.+|+.++.+++.++.+.+.+...+....+.++..|+.+.. +... ..
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4678999997765 333444333 2257899999999988887777766554335889999987511 1000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 86 g~id~lv~nA 95 (319)
T 3ioy_A 86 GPVSILCNNA 95 (319)
T ss_dssp CCEEEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.69 Score=39.38 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=52.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+.+|.-|.++|. +..+++.+ ..+++|+.+|.+++.++.+.+.+...+. .+.++..|+.+.. ... ...
T Consensus 6 ~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47888988877754 33333322 2368999999999999888888877663 3888899997511 000 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|+++.+.
T Consensus 83 G~iDiLVNNA 92 (254)
T 4fn4_A 83 SRIDVLCNNA 92 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 5789988643
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.52 Score=40.11 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=50.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCcCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDEFSGL 181 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~~~~~ 181 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+++.++.+.+.+...+....+.+...|+.+.. +.. .+.
T Consensus 9 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~ 85 (267)
T 3t4x_A 9 KGKTALVTGSTA-GIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPK 85 (267)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCC
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCC
Confidence 467888888654 4444444433 1257999999999888777666655543344778888887511 111 146
Q ss_pred ccEEEecC
Q 021550 182 ADSIFLDL 189 (311)
Q Consensus 182 ~D~V~~d~ 189 (311)
+|++|.+.
T Consensus 86 id~lv~nA 93 (267)
T 3t4x_A 86 VDILINNL 93 (267)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 89988654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.42 Score=43.22 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=60.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec--CCC-------------
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--IQG------------- 171 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D--~~~------------- 171 (311)
++.+|+.+|+|. |..+..++..++ .+|+++|.+++.++.+.+ .|. ++...+ ...
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHH----TTC----EECCCC-------------CHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccchhhhhHHHH
Confidence 678999999998 888888888874 689999999998877764 232 111110 000
Q ss_pred ----CCCCCcCCCCccEEEecC--C---ChhhHHHHHHhcccCCcEEEE
Q 021550 172 ----QGFPDEFSGLADSIFLDL--P---QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 172 ----~~~~~~~~~~~D~V~~d~--~---~~~~~l~~~~~~LkpgG~lv~ 211 (311)
..+.+ .-..+|+||... | .|.-+-+.+.+.+|||+.++-
T Consensus 253 ~~~~~~l~e-~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 253 AQQQQALED-AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHHHHHH-HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred hhhHHHHHH-HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 00100 014689988643 2 222244788899999988874
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.048 Score=42.03 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
++.+....+.+|+.+|+|. .+..++..+. .+.+|+.+|.+++..+...+. .+ ...... +.. ..+
T Consensus 13 ~~~~~~~~~~~v~iiG~G~--iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~---~~----~~~~~~~~~~-~~~---- 78 (144)
T 3oj0_A 13 YDIVRKNGGNKILLVGNGM--LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK---YE----YEYVLINDID-SLI---- 78 (144)
T ss_dssp HHHHHHHCCCEEEEECCSH--HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHH---HT----CEEEECSCHH-HHH----
T ss_pred HHHHHhccCCEEEEECCCH--HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHH---hC----CceEeecCHH-HHh----
Confidence 3444444589999999865 3333433331 234599999998876654333 23 222211 111 111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+|+|+...+.+...+. ...|++|+.++-.
T Consensus 79 -~~~Divi~at~~~~~~~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 79 -KNNDVIITATSSKTPIVE--ERSLMPGKLFIDL 109 (144)
T ss_dssp -HTCSEEEECSCCSSCSBC--GGGCCTTCEEEEC
T ss_pred -cCCCEEEEeCCCCCcEee--HHHcCCCCEEEEc
Confidence 358999987776543332 2668888877654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.58 Score=40.67 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=52.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
-.+.+||..|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+. .+.++..|+.+.. +... .
T Consensus 29 l~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHh
Confidence 35788999988754 344444333 1257899999999988887777765543 3888999987511 1100 0
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 106 ~g~id~lvnnA 116 (301)
T 3tjr_A 106 LGGVDVVFSNA 116 (301)
T ss_dssp HSSCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 14689988654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.78 Score=35.33 Aligned_cols=103 Identities=9% Similarity=-0.065 Sum_probs=59.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V 185 (311)
..+|+.+|+|. .+..+++.+. .+..|+.+|.+ ++.++....... .+ +.++.+|..+.. +....-..+|+|
T Consensus 3 ~~~vlI~G~G~--vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-~~----~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DN----ADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TT----CEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECCCH--HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-CC----CeEEEcCCCCHHHHHHcChhhCCEE
Confidence 45788898754 4444443331 24689999997 455544443221 12 678889886411 111011468999
Q ss_pred EecCCChhh--HHHHHHhcccCCcEEEEecCCHHH
Q 021550 186 FLDLPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 186 ~~d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
++..++... .+....+.+.|...+++.....+.
T Consensus 76 i~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~ 110 (153)
T 1id1_A 76 LALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp EECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred EEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 987776542 334556666677778776554443
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.48 Score=40.06 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.++.+++.++...+.+ + ..+.++..|+.+.. +.. ...
T Consensus 7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 5788999887654 444444333 12579999999998877665543 2 24888899987511 100 001
Q ss_pred CCccEEEecCCC----------h--------------hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQ----------P--------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~----------~--------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|++|.+... . ...++.+.+.++.+|.++..+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 468998865421 0 1245667777888898887644
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.46 Score=41.40 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
-++.+|+.+|+|. |......+..+ +.+|+++|.+++..+.+.+ .+ +.... .+.. ..+ ...|+
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~----~g----~~~~~~~~l~-~~l-----~~aDv 218 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITE----MG----LVPFHTDELK-EHV-----KDIDI 218 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TT----CEEEEGGGHH-HHS-----TTCSE
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CC----CeEEchhhHH-HHh-----hCCCE
Confidence 3678999999987 66666666665 3699999999876554432 33 22221 1221 111 45899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+...|... +-......++||+.++-.+
T Consensus 219 Vi~~~p~~~-i~~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 219 CINTIPSMI-LNQTVLSSMTPKTLILDLA 246 (300)
T ss_dssp EEECCSSCC-BCHHHHTTSCTTCEEEECS
T ss_pred EEECCChhh-hCHHHHHhCCCCCEEEEEe
Confidence 998877532 2244667899999887554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.21 Score=45.96 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.-.|++|+.+|+|. |......++.+ +.+|+++|+++.....|.. .|. .+ .++. ..+ ...|+
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~----~G~----~v--~~Le-eal-----~~ADI 278 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACM----DGF----RL--VKLN-EVI-----RQVDI 278 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHH-HHT-----TTCSE
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHH----cCC----Ee--ccHH-HHH-----hcCCE
Confidence 35789999999998 77777778776 4689999999875544432 232 11 2222 112 35799
Q ss_pred EEecCCChhhHH-HHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAI-PSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l-~~~~~~LkpgG~lv~~~~ 214 (311)
|+.. +....++ ......+|+|++++-.+-
T Consensus 279 Vi~a-tgt~~lI~~e~l~~MK~gailINvgr 308 (435)
T 3gvp_A 279 VITC-TGNKNVVTREHLDRMKNSCIVCNMGH 308 (435)
T ss_dssp EEEC-SSCSCSBCHHHHHHSCTTEEEEECSS
T ss_pred EEEC-CCCcccCCHHHHHhcCCCcEEEEecC
Confidence 8874 3333344 377888999998886543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.17 Score=43.21 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=42.1
Q ss_pred EEEEecCCC--CCCCCcCCCCccEEEecCCCh-------------------hhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 163 ~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~-------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
.++++|+.. ..+++ ++||+||+|+|-. ...+..+.++|+|+|.+++..... ....
T Consensus 6 ~l~~gD~~~~l~~l~~---~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~-~~~~ 81 (260)
T 1g60_A 6 KIHQMNCFDFLDQVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF-NCAF 81 (260)
T ss_dssp SEEECCHHHHHHHSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH-HHHH
T ss_pred eEEechHHHHHHhccc---cccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH-HHHH
Confidence 456777653 12343 6899999999832 135677889999999998875333 3344
Q ss_pred HHHHHhh-cCc
Q 021550 222 SCESLRL-NFT 231 (311)
Q Consensus 222 ~~~~l~~-~f~ 231 (311)
+...+.+ +|.
T Consensus 82 ~~~~~~~~gf~ 92 (260)
T 1g60_A 82 ICQYLVSKGMI 92 (260)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHhhccc
Confidence 4445554 553
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.54 Score=40.06 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=51.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.|+++|.-|.+.|. +..+++.+ ..+++|+..|.+++.++.+.+.+...+. .+..+..|+.+.. . .. ...
T Consensus 8 ~gKvalVTGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGL-GFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 47788888877653 33333333 2358999999999988888777776663 3778888987511 0 00 012
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|+++.+.
T Consensus 85 G~iDiLVNNA 94 (255)
T 4g81_D 85 IHVDILINNA 94 (255)
T ss_dssp CCCCEEEECC
T ss_pred CCCcEEEECC
Confidence 6789988653
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.58 E-value=1.2 Score=38.01 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=55.4
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC-CccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~-~~D~V~~ 187 (311)
.+|..||+|. |......+...+...+|+++|.+++.++.+++ .|... . ...|.. ..+ . ..|+|++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~-~~~-----~~~aDvVil 68 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIA-KVE-----DFSPDFVML 68 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCGG-GGG-----GTCCSEEEE
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc--c-ccCCHH-HHh-----cCCCCEEEE
Confidence 3688999887 55443333332212379999999988776543 34321 1 112222 111 3 5899999
Q ss_pred cCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 188 DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 188 d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..|.. ..++..+...++++..++..+.
T Consensus 69 avp~~~~~~v~~~l~~~l~~~~iv~~~~~ 97 (281)
T 2g5c_A 69 SSPVRTFREIAKKLSYILSEDATVTDQGS 97 (281)
T ss_dssp CSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 88754 3456677778888887665433
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.98 Score=38.97 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQ-RAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.+++||..|++.| ++..+++.+ ..+.+|+.++.+++ ..+.+.+.+...+ ..+.++..|+.+.. +.. ..
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678998887654 444444433 12578999998765 3444444444444 34888999987511 100 00
Q ss_pred CCCccEEEecCC-----Ch--------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLP-----QP--------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~-----~~--------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.+.+|++|.+.. .+ ..+++.+.+.++.+|.++..+..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~ 184 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI 184 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence 146899886532 10 13456677888889988876553
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.52 E-value=3.4 Score=35.94 Aligned_cols=99 Identities=21% Similarity=0.160 Sum_probs=52.1
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |......+...+....|+.+|++++.++.....+.... ......+...|. ..+ ...|+|++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~--~a~-----~~aDvVIi~ 74 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH--SEL-----ADAQVVILT 74 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG--GGG-----TTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH--HHh-----CCCCEEEEc
Confidence 688999987 44333333332223389999999886654222222111 111133333332 122 457999987
Q ss_pred CCCh------------------hhHHHHHHhcccCCcEEEEecCCHH
Q 021550 189 LPQP------------------WLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 189 ~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
.+.+ ..+++.+.+. .|++.+++++-..+
T Consensus 75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 75 AGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 6432 2334455554 69998887544433
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.50 E-value=1.7 Score=37.35 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh---C-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FP 175 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~---~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~ 175 (311)
.++++|..|+++| ++..+++.+ + ...+|+.++.+++.++.+.+.+........+.++..|+.+.. ..
T Consensus 32 ~~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999987654 444444433 1 123899999999988877776655432334888899987511 11
Q ss_pred CcCCCCccEEEecC
Q 021550 176 DEFSGLADSIFLDL 189 (311)
Q Consensus 176 ~~~~~~~D~V~~d~ 189 (311)
+ ..+.+|++|.+.
T Consensus 111 ~-~~g~iD~lVnnA 123 (287)
T 3rku_A 111 Q-EFKDIDILVNNA 123 (287)
T ss_dssp G-GGCSCCEEEECC
T ss_pred H-hcCCCCEEEECC
Confidence 1 114789998653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.72 Score=37.91 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=56.5
Q ss_pred EEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEec
Q 021550 111 LVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d 188 (311)
+|+.+|+|. ++..+++.+. .+..|+.+|.+++.++...+. .+ +.++.+|..+.. +....-..+|+|++.
T Consensus 2 ~iiIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECCHH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 578888764 4444443331 246899999999987764432 22 567888887511 111111468999988
Q ss_pred CCChhh--HHHHHHhcccCCcEEEEecC
Q 021550 189 LPQPWL--AIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~~~~~--~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++... .+..+.+.+.+...+++...
T Consensus 73 ~~~d~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 73 TPRDEVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 776643 33344455556667766433
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.52 Score=40.93 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
-+|.+|+.+|+|. |......+..+ +.+|+++|.+++..+.+. ..|. .... .+.. ..+ ...|+
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~----~~g~----~~~~~~~l~-~~l-----~~aDv 216 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIA----EMGM----EPFHISKAA-QEL-----RDVDV 216 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTS----EEEEGGGHH-HHT-----TTCSE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHH----HCCC----eecChhhHH-HHh-----cCCCE
Confidence 4688999999987 66666666665 359999999987655443 2342 2221 1111 111 45899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+...|... +-......++||+.++-.+
T Consensus 217 Vi~~~p~~~-i~~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 217 CINTIPALV-VTANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp EEECCSSCC-BCHHHHHHSCTTCEEEECS
T ss_pred EEECCChHH-hCHHHHHhcCCCCEEEEec
Confidence 998877532 1234567789999888654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=1.1 Score=37.84 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred CCCEEEEEccccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G-~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.+.+||..|++.+ +++..+++.+ ..+.+|+.++.++...+.+.+.....+.. .+.++..|+.+.. +... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRN-DSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSC-CCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCC-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678999997632 2333333322 12578999998877666666655554432 4888999997521 1000 0
Q ss_pred CCCccEEEecCCC--------h--------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ--------P--------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~--------~--------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|++|.+... + ..+++.+.+.++++|.++..+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 1368988865321 0 1245667778888899887644
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.35 Score=41.60 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=46.1
Q ss_pred EecCCCCCCCCcCCCCccEEEecCCChh----------------hHHHHHHhcccCCcEEEEecCCHH--HHHHHHHHHh
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCSFSPCIE--QVQRSCESLR 227 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~~~~~----------------~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~ 227 (311)
..|+.. +... +.+|+|++|+..+. -++..+.+.|+|||.+++-.-... ..+.+...|.
T Consensus 195 ~lDfg~-p~~~---~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~La 270 (320)
T 2hwk_A 195 RLDLGI-PGDV---PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIA 270 (320)
T ss_dssp CGGGCS-CTTS---CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHH
T ss_pred ccccCC-cccc---CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHH
Confidence 566653 2111 67999999876331 146678899999999988544433 6788888888
Q ss_pred hcCceeeE
Q 021550 228 LNFTDIRT 235 (311)
Q Consensus 228 ~~f~~~~~ 235 (311)
+.|..++.
T Consensus 271 R~F~~Vr~ 278 (320)
T 2hwk_A 271 RQFKFSRV 278 (320)
T ss_dssp TTEEEEEE
T ss_pred Hhcceeee
Confidence 88877663
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=1.3 Score=33.03 Aligned_cols=99 Identities=8% Similarity=-0.020 Sum_probs=55.1
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V~ 186 (311)
+.+|+.+|+|. |......+... +..|+.+|.+++.++.+++ .+ ..+..+|..+. .+.......+|+|+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~----~~----~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT----TC----SEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hC----CEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 46799999865 44433333332 3579999998876544321 12 34566676531 11110014689999
Q ss_pred ecCCCh-h--hHHHHHHhcccCCcEEEEecCCHHH
Q 021550 187 LDLPQP-W--LAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 187 ~d~~~~-~--~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
...+.+ . ..+....+.+.+. .+++.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~ 109 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIP-NIWVKAQNYYH 109 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCS-EEEEECCSHHH
T ss_pred ECCCCchHHHHHHHHHHHHcCCC-eEEEEeCCHHH
Confidence 887754 2 2334445556665 66655555443
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.46 Score=40.40 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCCCCcCCCCccEEEecCCChh----------------hHHHHHHhcccCCcEEEE--ecCCHHHHHHHHHHHhhcCcee
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----------------LAIPSAKKMLKQDGILCS--FSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----------------~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
.+++... +.||+||+++..|. -+-..++..|+|||.+++ |.-.....+.++..+...|...
T Consensus 203 lG~P~~~-grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~ 281 (324)
T 3trk_A 203 LGLPATL-GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSS 281 (324)
T ss_dssp GCCCGGG-CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEE
T ss_pred cCCCCcC-CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheee
Confidence 5566432 68999999987552 123567889999999887 4555566778888887777766
Q ss_pred eEE
Q 021550 234 RTF 236 (311)
Q Consensus 234 ~~~ 236 (311)
+..
T Consensus 282 rv~ 284 (324)
T 3trk_A 282 RAL 284 (324)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.66 Score=39.98 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CC----C--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~----~--~~~ 179 (311)
.|+.+|.-|.++|. +..+++.+ ..+++|+.+|.+++.++.+.+.+ + .....+.+|+.+.. .. . ...
T Consensus 28 ~gKvalVTGas~GI-G~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSGI-GLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57888988887753 33333322 23589999999999887665543 3 23667788987511 00 0 011
Q ss_pred CCccEEEecCC------------Ch------------hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLP------------QP------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~------------~~------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+..|++|.+.. +. +...+.+.+.|+.+|.++..+.
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 57898886532 11 2346777888999998887644
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.86 E-value=1.1 Score=37.81 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=64.4
Q ss_pred CCCEEEEEccccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cC
Q 021550 108 PGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G-~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~ 178 (311)
.|+++|.-|++++ +++..+++.+ ..+++|+..+.+++.++.+.+.+...+-.. +.+...|+.+.. . .. ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPE-AHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSS-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc-EEEEEccCCCHHHHHHHHHHHHHH
Confidence 5789999996431 2223333222 125899999999988888887776655433 778889987511 0 00 01
Q ss_pred CCCccEEEecCCC----------------hh------------hHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ----------------PW------------LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------------~~------------~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+..|+++.+..- .| .....+...++.+|.|+..+.
T Consensus 84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 1578988865320 01 122345667788999887643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=90.74 E-value=3.7 Score=35.08 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=55.2
Q ss_pred CEEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|..||+|. |.. +..+++. +....|+++|.+++.++.+++ .|... ....|.. ..+ ...|+||+
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~-~~~-----~~aDvVil 72 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRD-HPHYKIVGYNRSDRSRDIALE----RGIVD---EATADFK-VFA-----ALADVIIL 72 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTT-TTG-----GGCSEEEE
T ss_pred ceEEEEeeCHHHHHHHHHHHhC-CCCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHH-Hhh-----cCCCEEEE
Confidence 5799999987 443 3334433 334689999999987776543 34321 1122322 111 35899999
Q ss_pred cCCCh--hhHHHHHHhc-ccCCcEEEEecC
Q 021550 188 DLPQP--WLAIPSAKKM-LKQDGILCSFSP 214 (311)
Q Consensus 188 d~~~~--~~~l~~~~~~-LkpgG~lv~~~~ 214 (311)
..|.. ..++..+... ++++..++..+.
T Consensus 73 avp~~~~~~v~~~l~~~~l~~~~ivi~~~~ 102 (290)
T 3b1f_A 73 AVPIKKTIDFIKILADLDLKEDVIITDAGS 102 (290)
T ss_dssp CSCHHHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCEEEECCC
Confidence 88754 3466777777 888776664333
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.73 E-value=1.3 Score=38.78 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---CcEEEEE-ecCCCCCCCCcCCCCcc
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGV-RDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~-~D~~~~~~~~~~~~~~D 183 (311)
..+|..+|+|. |......+... +..|+.+ .+++.++..++. |+. ....+.. ..+. ..... ...+|
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~-~~~~~--~~~~D 88 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSAS-SDPSA--VQGAD 88 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEE-SCGGG--GTTCS
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeee-CCHHH--cCCCC
Confidence 46899999997 54333333332 4588888 888877766543 211 0011100 0000 01111 14689
Q ss_pred EEEecCCCh--hhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 184 SIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 184 ~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
+||+..+.. ..+++.+...++++..++...-..+.
T Consensus 89 ~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 89 LVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp EEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 999987754 35677778888888877766554443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.41 Score=44.16 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.-.|++|+.+|.|. |......++.+ +.+|+++|+++.....+. ..|. .+ .++. ..+ ...|+
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~----~~G~----~v--v~Le-ElL-----~~ADI 305 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAA----MDGF----EV--VTLD-DAA-----STADI 305 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHH----HTTC----EE--CCHH-HHG-----GGCSE
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHH----hcCc----ee--ccHH-HHH-----hhCCE
Confidence 35789999999998 77777777776 479999999987544332 2232 22 1222 112 35799
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+...+...-+-......+|+|++|+-.+-
T Consensus 306 Vv~atgt~~lI~~e~l~~MK~GAILINvGR 335 (464)
T 3n58_A 306 VVTTTGNKDVITIDHMRKMKDMCIVGNIGH 335 (464)
T ss_dssp EEECCSSSSSBCHHHHHHSCTTEEEEECSS
T ss_pred EEECCCCccccCHHHHhcCCCCeEEEEcCC
Confidence 887654433233677888999999886543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=90.68 E-value=4.7 Score=34.99 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=56.0
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCcEEEEEe-cCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~~~~~D~V~ 186 (311)
.+|..+|+|. |......+...+....|+.+|.+++.++. +.+......+.....+... |.. .+ ..+|+||
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-----~~aD~Vi 80 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--IC-----RDADMVV 80 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GG-----TTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH--Hh-----CCCCEEE
Confidence 6899999987 55443333332212289999999876652 2211111111111333322 221 11 4589999
Q ss_pred ecCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 187 LDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 187 ~d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
+....+. .+++.+.+. .|++.++.+.-.......+.
T Consensus 81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~ 134 (319)
T 1lld_A 81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVA 134 (319)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHH
Confidence 8663221 345555553 68888887655554444433
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.89 Score=38.71 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=50.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. +... ..
T Consensus 3 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567888887654 444444333 235789999999998888777766554 34788888987511 1000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=1.1 Score=38.89 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=57.9
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------hcCCC-C-------------cEEEEE
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-------RTGVS-S-------------FVTVGV 166 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~g~~-~-------------~v~~~~ 166 (311)
.+|..||+|. |. ++..+++. +..|+.+|.+++.++.+++.+. ..|.- . ++.+.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~- 91 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT---GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS- 91 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-
Confidence 5799999987 54 44444443 4689999999998887655332 12211 0 13321
Q ss_pred ecCCCCCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEec
Q 021550 167 RDIQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 167 ~D~~~~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~ 213 (311)
.|.. ..+ ...|+||...|... .++..+.+.++++..++..+
T Consensus 92 ~~~~-~~~-----~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~t 136 (302)
T 1f0y_A 92 TDAA-SVV-----HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136 (302)
T ss_dssp SCHH-HHT-----TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred cCHH-Hhh-----cCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 2221 112 45899999888753 45677777788887665433
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.6 Score=37.69 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=62.9
Q ss_pred CCCCEEEEEccccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------
Q 021550 107 VPGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------ 177 (311)
Q Consensus 107 ~~g~~VLdiG~G~G-~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------ 177 (311)
-.++++|..|+++| +++..+++.+ ..+.+|+.++.++...+.+++.....+ .+.++..|+.+.. +...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence 35789999998743 2333333322 125789999998766555555544443 2788889987511 1000
Q ss_pred CCCCccEEEecCCC--------h--------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQ--------P--------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~--------~--------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.+|++|.+... + ..+++.+.+.++.+|.|+..+.
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 01468998865421 0 1245566777788899887644
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.36 E-value=1.1 Score=37.98 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.++++|..|++. .++.++++.+ ..+.+|+.++.+++.++.+.+.+...+.. .+.++..|+.+.. +... ..
T Consensus 9 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTK-GIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSG-KVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSS-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCC-cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467888888655 4444444433 12479999999999888777766655423 3888999987511 1000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 87 g~id~lvnnA 96 (262)
T 3pk0_A 87 GGIDVVCANA 96 (262)
T ss_dssp SCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.34 E-value=1.5 Score=37.31 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=61.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.++++|..|++.| ++..+++.+ ..+.+|+.++.+ .+..+...+.+...+ ..+.++..|+.+.. +... .
T Consensus 30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999987654 344444333 125688887654 455665555555544 33888899987511 1000 0
Q ss_pred CCCccEEEecCCC------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|++|.+... +..+++.+.+.|+.+|.++..+.
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 1468998865421 11345667778888898887644
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=90.28 E-value=1.3 Score=37.54 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.++. +++..+...+.+...+ ..+.++..|+.+.. +... .
T Consensus 17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678888887654 444444433 12568888765 4556666665555544 33888899987511 1000 0
Q ss_pred CCCccEEEecCCC------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|++|.+... +..+++.+.+.++.+|.++..+.
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1468998864321 01345677788888898887654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=90.20 E-value=0.66 Score=41.20 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=64.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--------------------CCCcEEEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--------------------VSSFVTVGV 166 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--------------------~~~~v~~~~ 166 (311)
.+...|+.+|||.......+.... +..+++-+|. |+.++.-++.+...+ ...+..++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 456789999999999988887763 4567777887 888777777766542 124588888
Q ss_pred ecCCCCCC-----CCc-CCCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEe
Q 021550 167 RDIQGQGF-----PDE-FSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 167 ~D~~~~~~-----~~~-~~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.|+.+..+ ... ......+++...- ....++..+.... |+|.+++|
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 89875222 110 0123445443221 2234555565554 78887766
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=8.5 Score=33.63 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+..+|..+|+|. |......+..-+-...+..+|++++.++. +............+.+...+. ..+ ...|+|
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~--~a~-----~~aDvV 76 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDC-----KDADLV 76 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGG-----TTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCH--HHh-----CCCCEE
Confidence 346899999987 54333333332223589999999887764 333222211112244443222 223 457999
Q ss_pred EecCCChh--------------hHHH----HHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 186 FLDLPQPW--------------LAIP----SAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 186 ~~d~~~~~--------------~~l~----~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
++..+.+. ..+. .+.+. .|.|.+++++-..+.+.....
T Consensus 77 ii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~ 132 (318)
T 1ez4_A 77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATW 132 (318)
T ss_dssp EECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHHHHHHHHH
Confidence 87544221 1222 33333 799999987655554444433
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=1.5 Score=37.18 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.++++|..|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+.. .+- ..+.++..|+.+.. +... .
T Consensus 7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678898887664 333333332 1257899999999888877766655 332 23888889987511 0000 0
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 85 ~g~id~lvnnA 95 (265)
T 3lf2_A 85 LGCASILVNNA 95 (265)
T ss_dssp HCSCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14689988654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=90.07 E-value=8.9 Score=33.79 Aligned_cols=109 Identities=11% Similarity=-0.014 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEE-EecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVG-VRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~-~~D~~~~~~~~~~~~~~D 183 (311)
++..+|..+|+|. |......+..-+-...++.+|++++.++....-+... .......+. ..|.. .+ ...|
T Consensus 19 ~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~-----~daD 91 (330)
T 3ldh_A 19 RSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VS-----AGSK 91 (330)
T ss_dssp CCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SC-----SSCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--Hh-----CCCC
Confidence 3567999999986 5544333333222348999999988665433222211 111112222 23432 13 4589
Q ss_pred EEEecCCCh------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 184 SIFLDLPQP------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 184 ~V~~d~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
+||+....+ ....+.+.+. .|++.+++++-..+.+....
T Consensus 92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvdi~t~~~ 148 (330)
T 3ldh_A 92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQD 148 (330)
T ss_dssp EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccHHHHHHH
Confidence 998753321 1234455555 79999988776555444433
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=1.1 Score=40.56 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=73.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++++.+... +.+||+++.+.|.+++.++ +..+++.+.-+...... +..+|+.. .. .+.. .. +.
T Consensus 37 ~l~~~~~~~-~~~~l~~n~~~g~~~~~~~----~~~~~~~~~~~~~~~~~----l~~~~~~~--~~--~~~~-~~-~~-- 99 (381)
T 3dmg_A 37 LLQKTVEPF-GERALDLNPGVGWGSLPLE----GRMAVERLETSRAAFRC----LTASGLQA--RL--ALPW-EA-AA-- 99 (381)
T ss_dssp HHHTTCCCC-SSEEEESSCTTSTTTGGGB----TTBEEEEEECBHHHHHH----HHHTTCCC--EE--CCGG-GS-CT--
T ss_pred HHHHHHHHh-CCcEEEecCCCCccccccC----CCCceEEEeCcHHHHHH----HHHcCCCc--cc--cCCc-cC-Cc--
Confidence 466666553 4699999999998876654 23677777554443333 45567653 11 1111 11 22
Q ss_pred CCCccEEEecCCCh------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 179 SGLADSIFLDLPQP------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 179 ~~~~D~V~~d~~~~------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
..||+|++-+|-. ...|.++...|+|||.+++......-+..+...+..
T Consensus 100 -~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~ 154 (381)
T 3dmg_A 100 -GAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARA 154 (381)
T ss_dssp -TCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHH
T ss_pred -CCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHh
Confidence 6799999988842 245677889999999999887766667767666664
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.90 E-value=1.4 Score=37.91 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=49.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.+.++|..|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. +... ..
T Consensus 27 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 27 PSPVALITGAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp CCCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678898887654 344444333 225799999999988877776665443 34888899987511 1000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 104 g~iD~lVnnA 113 (283)
T 3v8b_A 104 GHLDIVVANA 113 (283)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.57 Score=39.50 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=64.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~------~ 178 (311)
.+.+||..|+ +|.++.++++.+. .+.+|+.++.+++..+.+.+.+...+ ..+.++..|+.+. .+... .
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4567887774 5666666665542 25789999999887776666665544 2378888998751 11100 0
Q ss_pred CCCccEEEecCCC----------hh--------------hHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQ----------PW--------------LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------~~--------------~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.+.+|+||.+... .. .+++.+.+.++++|.++..+..
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~ 140 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence 0368998865321 11 2445566777777888876653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.83 E-value=1.1 Score=38.62 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC--HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH--EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------ 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~--~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------ 177 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+ +...+.+.+.+...+ ..+.++..|+.+.. +...
T Consensus 48 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDS-GIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899888765 4444444433 125788888876 344555555555544 33788888887511 0000
Q ss_pred CCCCccEEEecCCC-------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQ-------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~-------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.+|++|.+... +..+++.+.+.++.+|.|+..+.
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 01468998864321 01345667788888899887644
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.79 E-value=2 Score=35.70 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=50.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CC----C--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~----~--~~~ 179 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+++..+...+.+...+. .+.++..|+.+.. +. . ...
T Consensus 4 ~~k~vlITGas~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASR-GIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357888888654 4444444433 1257899999999888877777666553 3888999987511 00 0 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 81 ~~id~li~~A 90 (247)
T 3lyl_A 81 LAIDILVNNA 90 (247)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=89.72 E-value=6.3 Score=34.33 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=56.2
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |.....++..-+....+..+|++++.++. +............+.+...|. ..+ ...|+|++.
T Consensus 2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~--~a~-----~~aD~Vii~ 74 (310)
T 2xxj_A 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSY--GDL-----EGARAVVLA 74 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCG--GGG-----TTEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCH--HHh-----CCCCEEEEC
Confidence 688899987 44443333332334689999999887764 333222111111244444332 222 458999875
Q ss_pred CCChh--------------hHH----HHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 189 LPQPW--------------LAI----PSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 189 ~~~~~--------------~~l----~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
.+.+. ..+ +.+.+. .|.|.+++++-..+.+....
T Consensus 75 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~ 126 (310)
T 2xxj_A 75 AGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVA 126 (310)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHH
Confidence 43221 122 233333 79999998755444443333
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=1.6 Score=37.49 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=64.3
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCC--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVS--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------g~~--------~~v~~~~~D~~~ 171 (311)
.+|..||+|. |......+... +..|+.+|.+++.++.+.+.+... ++. .++.+ ..|..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~- 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA- 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH-
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH-
Confidence 5799999987 44333333332 468999999999988877653221 111 01222 12221
Q ss_pred CCCCCcCCCCccEEEecCCCh----hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 172 QGFPDEFSGLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~----~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
..+ ...|+||...+.. ..++.++...++|+..++..+... ...++.+.+.
T Consensus 81 ~~~-----~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~-~~~~la~~~~ 134 (283)
T 4e12_A 81 QAV-----KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL-LPSDLVGYTG 134 (283)
T ss_dssp HHT-----TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS-CHHHHHHHHS
T ss_pred HHh-----ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhhcC
Confidence 111 4589999988865 345677888889988877544433 2344555553
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=89.65 E-value=1.4 Score=36.91 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=48.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC--CCCC-CCC------c
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI--QGQG-FPD------E 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~--~~~~-~~~------~ 177 (311)
.++++|..|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. .+.+...|+ .+.. ... .
T Consensus 11 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 11 NDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSC-CCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-CceEEEEecccCCHHHHHHHHHHHHH
Confidence 5678898887654 444444433 12578999999998887776666544322 277888888 3210 000 0
Q ss_pred CCCCccEEEecC
Q 021550 178 FSGLADSIFLDL 189 (311)
Q Consensus 178 ~~~~~D~V~~d~ 189 (311)
..+.+|++|.+.
T Consensus 89 ~~g~id~lv~nA 100 (252)
T 3f1l_A 89 NYPRLDGVLHNA 100 (252)
T ss_dssp HCSCCSEEEECC
T ss_pred hCCCCCEEEECC
Confidence 114689988653
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.47 Score=41.77 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=61.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......+++.||+|. |...+..+....+..+|..++.+ ..-+.+.+.-...+.. +... |..+ .+
T Consensus 112 aa~~La~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~--~~~~--~~~e-av---- 181 (313)
T 3hdj_A 112 AAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVP--ARMA--APAD-IA---- 181 (313)
T ss_dssp HHHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSC--EEEC--CHHH-HH----
T ss_pred HHHhhccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCe--EEEe--CHHH-HH----
Confidence 34555555678999999997 55444333333456789999998 4444444332233432 2222 4321 11
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...|+|+...+....++. ...|+||..++.++..
T Consensus 182 -~~aDIVi~aT~s~~pvl~--~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 182 -AQADIVVTATRSTTPLFA--GQALRAGAFVGAIGSS 215 (313)
T ss_dssp -HHCSEEEECCCCSSCSSC--GGGCCTTCEEEECCCS
T ss_pred -hhCCEEEEccCCCCcccC--HHHcCCCcEEEECCCC
Confidence 358999987765544443 4578998888876553
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.60 E-value=0.94 Score=38.28 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTF-DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~v-D~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.++++|..|+++| ++.++++.+ ..+.+|+.+ +.+++..+.+.+.+...+ ..+.++..|+.+.. +... .
T Consensus 7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678998887664 333444333 124678777 677777666666665544 33788889987511 1000 0
Q ss_pred CCCccEEEecCCC-----h--------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ-----P--------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~-----~--------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|++|.+... + ..+++.+.+.++++|.++..+.
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 1468998865420 0 1245566777777888887654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.48 E-value=8 Score=33.47 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=56.6
Q ss_pred CEEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cC-CCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TG-VSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 110 ~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g-~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.+|..+|+|. |.. +..++.. +-...|+.+|++++.++.....+.. .. ....+.+...|.. .+ ...|+|
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~--~~-----~~aDvV 73 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA--AL-----ADADVV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG--GG-----TTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHH--Hh-----CCCCEE
Confidence 3788999887 443 3333333 2125899999999877655433321 10 1111333333331 12 458999
Q ss_pred EecCCChh----------------------hHHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 186 FLDLPQPW----------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 186 ~~d~~~~~----------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
|+..+.+. .+++.+.+. .|++.+++++-..+...+.
T Consensus 74 iiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~ 131 (309)
T 1hyh_A 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDVITAL 131 (309)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHH
T ss_pred EEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCcHHHHHHH
Confidence 98776543 233444443 4788887765544443333
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.47 E-value=1.1 Score=38.20 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=49.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+++.++...+.+...+. .+.++..|+.+.. +... ..
T Consensus 27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 27 DKQVAIVTGASR-GIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 467888877655 4444444333 1257999999999888877776666553 2677888987511 1000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 104 g~iD~lvnnA 113 (270)
T 3ftp_A 104 GALNVLVNNA 113 (270)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988654
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.43 E-value=1.4 Score=37.57 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=49.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-------------HEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~-------------~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
-.++++|..|++.| ++.++++.+ ..+.+|+.+|. +++.++.+.+.+...+ ..+.++..|+.+.
T Consensus 13 l~gk~~lVTGas~g-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 13 LQGRVAFITGAARG-QGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD 89 (280)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred cCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence 35788998887764 333333333 22578999997 6777777666665544 3488888998751
Q ss_pred C-CCCc------CCCCccEEEecC
Q 021550 173 G-FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 173 ~-~~~~------~~~~~D~V~~d~ 189 (311)
. +... ..+.+|++|.+.
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 1 1000 014689988653
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.37 E-value=1 Score=38.31 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=48.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG- 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~- 173 (311)
.+++||..|++.| ++.++++.+ ..+.+|+.+|.+ ++.++...+.+...+ ..+.++..|+.+..
T Consensus 12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence 4678998886654 444444333 125789999987 666666655555544 24888999987511
Q ss_pred CCCc------CCCCccEEEecC
Q 021550 174 FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 174 ~~~~------~~~~~D~V~~d~ 189 (311)
+... ..+.+|++|.+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nA 110 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANA 110 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 1000 014689988654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=10 Score=33.01 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=57.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCC-CCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGV-SSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~-~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+..+|..+|+|. |......+..-+....++.+|++++..+. +......... ...+.+...+. ..+ ...|+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~--~al-----~~aDv 77 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDC-----RDADL 77 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGT-----TTCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH--HHh-----CCCCE
Confidence 346899999987 44333333332334689999999885553 2222222111 11244443222 223 45899
Q ss_pred EEecCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 185 IFLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 185 V~~d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
||+..+.+. .+.+.+.+. .|.+.+++++-..+.+....
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~tNPv~~~~~~~ 133 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYAT 133 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHH
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeCCchHHHHHHH
Confidence 997644221 123333333 58998887655444444333
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.35 Score=41.02 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=47.6
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
+.+|+.+|+|. |...+..+.+. +-++++.+|.+. ...+.+.+.+......-.+.....+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 57999999986 65544444443 357999999886 6677777776654332224444433
Q ss_pred CCCCCCCCcCCCCccEEEecCCCh
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~ 192 (311)
+....+.+. -..+|+|+...+.+
T Consensus 110 ~~~~~~~~~-~~~~DvVi~~~d~~ 132 (249)
T 1jw9_B 110 LDDAELAAL-IAEHDLVLDCTDNV 132 (249)
T ss_dssp CCHHHHHHH-HHTSSEEEECCSSH
T ss_pred CCHhHHHHH-HhCCCEEEEeCCCH
Confidence 321111110 13689988665544
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=89.11 E-value=1.5 Score=38.68 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=60.2
Q ss_pred hcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.+......+|+-+|+|. |...+..+....+..+|..++.+++..+...+.+...++. +. ..|..+ .. .
T Consensus 119 ~la~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~--~~--~~~~~e-~v------~ 187 (322)
T 1omo_A 119 YLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGIS--AS--VQPAEE-AS------R 187 (322)
T ss_dssp HHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCC--EE--ECCHHH-HT------S
T ss_pred hccCCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCce--EE--ECCHHH-Hh------C
Confidence 34445678999999986 4443333333335678999999999887777665543311 22 223321 11 3
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|+|+...|.....+. ...|+||-.++..++
T Consensus 188 aDvVi~aTp~~~pv~~--~~~l~~G~~V~~ig~ 218 (322)
T 1omo_A 188 CDVLVTTTPSRKPVVK--AEWVEEGTHINAIGA 218 (322)
T ss_dssp SSEEEECCCCSSCCBC--GGGCCTTCEEEECSC
T ss_pred CCEEEEeeCCCCceec--HHHcCCCeEEEECCC
Confidence 7999987765443332 356888887776543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=2.4 Score=39.05 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=54.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHhcCCCCcEEEEEe---cCCCCCCCCcCCCCccE
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVR---DIQGQGFPDEFSGLADS 184 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~---D~~~~~~~~~~~~~~D~ 184 (311)
.+|..||||. |..-+..+... ++.+++ .+|.+++..+.+.+.+...++.. ...... |.. ..+.. ..+|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~-~ll~~---~~vD~ 94 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYK-NMLKD---KNIDA 94 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHH-HHTTC---TTCCE
T ss_pred ceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHH-HHhcC---CCCCE
Confidence 5899999985 43322222222 456665 46999998887776665555432 233221 333 22332 46899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEE
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
|++..|... -.+.+..+|+.|-.+++
T Consensus 95 V~i~tp~~~-h~~~~~~al~aGkhV~~ 120 (444)
T 2ixa_A 95 VFVSSPWEW-HHEHGVAAMKAGKIVGM 120 (444)
T ss_dssp EEECCCGGG-HHHHHHHHHHTTCEEEE
T ss_pred EEEcCCcHH-HHHHHHHHHHCCCeEEE
Confidence 998877543 34455555665555554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.02 E-value=7.8 Score=33.83 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred EEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 111 LVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
+|..+|+|. |.. +..++.. +....|+.+|++++.++.....+.. ........+...|. ..+ ...|+||+
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~-----~~aDvVii 73 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY--ADL-----KGSDVVIV 73 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG--GGG-----TTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH--HHh-----CCCCEEEE
Confidence 688899987 443 3333333 2223899999999877664433221 10101123322332 112 45899998
Q ss_pred cCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 188 DLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 188 d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
..+.+. .+++.+.+. .|++.+++++-.......+.
T Consensus 74 av~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~~ 126 (319)
T 1a5z_A 74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFF 126 (319)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHHHHHHH
Confidence 765321 333444444 58898887655554444333
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=89.02 E-value=1.3 Score=37.41 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCC---HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-----
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFH---EQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE----- 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~---~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~----- 177 (311)
.++++|..|+++| ++..+++.+. .+.+|+.++.+ .+.++.+.+.+...+ ..+.++..|+.+.. +...
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888887654 5556665553 34688887654 345555555554433 34888899987511 1000
Q ss_pred -CCCCccEEEecCCC----h--------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 178 -FSGLADSIFLDLPQ----P--------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 -~~~~~D~V~~d~~~----~--------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+.+|++|.+... + ..+++.+.+.|+++|.++..+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~ 149 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS 149 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence 01468998865430 0 12456667777788888876543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.82 E-value=2.2 Score=36.81 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=48.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG- 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~- 173 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.+|.+ ++.++.+.+.+...+ ..+.++..|+.+..
T Consensus 27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDA 103 (299)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHH
Confidence 5778999887765 333333332 225789999987 666666666555544 34888999987511
Q ss_pred CCCc------CCCCccEEEecC
Q 021550 174 FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 174 ~~~~------~~~~~D~V~~d~ 189 (311)
+... ..+.+|++|.+.
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nA 125 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANA 125 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHhCCCCEEEECC
Confidence 1000 014689988643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=1.8 Score=36.83 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=49.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+.+..+.+.+.+.. .+ ..+.++..|+.+.. +.. ..
T Consensus 26 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 26 RDKVAFITGGGS-GIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG--RRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899888765 4444555443 2356899999998877666555432 23 23888999987511 000 00
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 103 ~g~id~lv~nA 113 (277)
T 4fc7_A 103 FGRIDILINCA 113 (277)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14689988654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=10 Score=33.20 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=58.7
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
++..+|..+|+|. |.....++..-+-...+..+|++++.++....-+... .....+.+...+. ..+ ...|+
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~--~a~-----~~aDv 79 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEY--SDA-----KDADL 79 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCG--GGG-----GGCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCH--HHh-----CCCCE
Confidence 3457999999987 5433333333222358999999988775432222211 1111244443221 222 45799
Q ss_pred EEecCCChh--------------hHHHHHHhc---ccCCcEEEEecCCHHHHHHHHH
Q 021550 185 IFLDLPQPW--------------LAIPSAKKM---LKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 185 V~~d~~~~~--------------~~l~~~~~~---LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
|++..+.+. ..+..+.+. ..|.|.+++++-..+.+.....
T Consensus 80 Vii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~ 136 (326)
T 2zqz_A 80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATW 136 (326)
T ss_dssp EEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHH
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Confidence 987554221 122222222 2699999987655554444333
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=88.44 E-value=2 Score=40.04 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh---cCC---------CCcEEEEEecCCCCCC
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---TGV---------SSFVTVGVRDIQGQGF 174 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~g~---------~~~v~~~~~D~~~~~~ 174 (311)
...+|..+|+|. |......+... +..|+++|++++.++..++.... .++ ..++.+ ..|.. ..+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~-~a~ 82 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIE-AAV 82 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHH-HHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHH-HHh
Confidence 346899999997 55443333332 46899999999988877642100 010 001222 11211 001
Q ss_pred CCcCCCCccEEEecCCCh------------hhHHHHHHhcccCCcEEEEec
Q 021550 175 PDEFSGLADSIFLDLPQP------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...|+||+..|.| ..+++.+.+.|++|..++..+
T Consensus 83 -----~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 83 -----AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp -----HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred -----hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3579999988764 245666777888877776544
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.40 E-value=1 Score=38.23 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCC-CCCc------C
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQG-FPDE------F 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~-~~~~------~ 178 (311)
.+++||..|++.| ++.++++.+ ..+.+|+.++.+++.++.+.+.+.. .+ ..+.++..|+.+.. +... .
T Consensus 19 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGATKG-IGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678888887654 444444433 1257899999999888777666544 33 23888999997522 1000 0
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 96 ~g~id~lv~nA 106 (266)
T 4egf_A 96 FGGLDVLVNNA 106 (266)
T ss_dssp HTSCSEEEEEC
T ss_pred cCCCCEEEECC
Confidence 14689988653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=8.9 Score=33.15 Aligned_cols=115 Identities=10% Similarity=-0.035 Sum_probs=59.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh----cCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
+|..+|+|. |.....++..-+....++.+|++++.++-....+.. .... ..+.. .| . ..+ ...|+
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~--~~i~~t~d-~-~a~-----~~aDi 72 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKY--PKIVGGAD-Y-SLL-----KGSEI 72 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCC--CEEEEESC-G-GGG-----TTCSE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCC--CEEEEeCC-H-HHh-----CCCCE
Confidence 688899976 543333333322234899999999876521111111 1222 33332 24 2 223 35799
Q ss_pred EEecCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 185 IFLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 185 V~~d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
|++..+.+. .+.+.+.+. .|++.+++++-..+.+....... .+|...+++
T Consensus 73 VViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd~~t~~~~k~-~g~p~~rvi 140 (294)
T 1oju_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKE-SGKPRNEVF 140 (294)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHH-SCCCTTSEE
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHh-cCCCHHHEe
Confidence 887543221 123334443 79999998876655554444332 144433433
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.32 E-value=3.2 Score=36.39 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=54.5
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+|..+|+|. |......+..-+....++.+|++++.++.....+... .....+++...|. ..+ ...|+|+
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~--~a~-----~~aDvVi 79 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY--SDV-----KDCDVIV 79 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG--GGG-----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH--HHh-----CCCCEEE
Confidence 46899999987 5444333333222348999999987655322222211 1112244443221 122 4589998
Q ss_pred ecCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 187 LDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 187 ~d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
+..+.+. ++.+.+.+. .|++.+++++-....+.....
T Consensus 80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~ 134 (318)
T 1y6j_A 80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQ 134 (318)
T ss_dssp ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHH
T ss_pred EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHH
Confidence 7654332 233334443 699999987555444444433
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=88.28 E-value=3.2 Score=35.32 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-----CCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE-----FSG 180 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~-----~~~ 180 (311)
.++++|..|++. .++..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. .... ..+
T Consensus 32 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 32 RGRTALVTGSSR-GIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 467888888665 4444444433 225789999999887777766665544 34888999987521 0000 004
Q ss_pred CccEEEecC
Q 021550 181 LADSIFLDL 189 (311)
Q Consensus 181 ~~D~V~~d~ 189 (311)
.+|++|.+.
T Consensus 109 ~iD~lvnnA 117 (275)
T 4imr_A 109 PVDILVINA 117 (275)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 689988654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=88.26 E-value=1.7 Score=36.58 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=48.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC-------cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD-------EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~-------~~ 178 (311)
.+++||..|++. .++.++++.+ ..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. +.. ..
T Consensus 8 ~~k~vlVTGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467889888654 4444444433 125789999999887776655554433 24788889987511 100 00
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 85 ~g~id~lv~~A 95 (260)
T 2ae2_A 85 HGKLNILVNNA 95 (260)
T ss_dssp TTCCCEEEECC
T ss_pred CCCCCEEEECC
Confidence 14689988654
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.24 E-value=2 Score=36.59 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeC-------------CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-------------HEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~-------------~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.+|. +++.++.+.+.+...+ ..+.+...|+.+..
T Consensus 10 ~~k~~lVTGas~G-IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAARG-QGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred CCCEEEEECCccH-HHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence 4678998887664 333333332 22578999988 6666666665555544 34888889987511
Q ss_pred -CCCc------CCCCccEEEecC
Q 021550 174 -FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 174 -~~~~------~~~~~D~V~~d~ 189 (311)
+... ..+.+|++|.+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnA 109 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANA 109 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 1000 014689988654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.22 E-value=1.7 Score=37.11 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------~~ 179 (311)
.++++|..|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+ + ..+.++..|+.+.. +... ..
T Consensus 28 ~gk~vlVTGas~gI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAGAGI-GLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTTSTH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888876653 33333322 22579999999988776665543 2 23778888987511 0000 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 102 g~iD~lvnnA 111 (277)
T 3gvc_A 102 GGVDKLVANA 111 (277)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4689988653
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=88.18 E-value=2.1 Score=37.38 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=47.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH------------EQRAASAREDFERTGVSSFVTVGVRDIQGQG- 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~- 173 (311)
.+++||..|++.| ++..+++.+ ..+.+|+.+|.+ ++.++.+.+.+...+ ..+.++..|+.+..
T Consensus 45 ~gk~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAARG-QGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence 5678888887654 333443333 125789999876 566666555555544 34888899987511
Q ss_pred CCCc------CCCCccEEEecC
Q 021550 174 FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 174 ~~~~------~~~~~D~V~~d~ 189 (311)
+... ..+.+|++|.+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnA 143 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNV 143 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 1000 014689988654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=2.2 Score=36.35 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=58.8
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
+|..+|+|. |......+.. +.+|+.+|.+++..+.+.+. |.. .. +.. ..+ ...|+||+..
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~----g~~----~~--~~~-~~~-----~~~D~vi~~v 63 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE----FGS----EA--VPL-ERV-----AEARVIFTCL 63 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH----HCC----EE--CCG-GGG-----GGCSEEEECC
T ss_pred eEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC----CCc----cc--CHH-HHH-----hCCCEEEEeC
Confidence 588899987 5433222222 35799999998877665543 321 11 111 111 3589999998
Q ss_pred CChh---hHHHHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 190 PQPW---LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 190 ~~~~---~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
+.+. .+++.+.+.+++|..++..+.. ......+.+.+.+
T Consensus 64 ~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~ 106 (289)
T 2cvz_A 64 PTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLRE 106 (289)
T ss_dssp SSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 8664 3456667778888777654433 2334555566654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=88.10 E-value=0.53 Score=44.04 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
.-+++|+.||.|+++..+.+. +...|+++|+++.+.+.-+.|+... .+ ..+..+|+.+
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~-~~~~~~DI~~ 145 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PA-THHFNEDIRD 145 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TT-TCEEESCTHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CC-cceeccchhh
Confidence 358999999999999887765 3345889999999888777764211 11 3456677764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=1.9 Score=36.79 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=47.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC----------------HHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH----------------EQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~----------------~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.++++|..|+++| ++..+++.+ ..+.+|+.+|.+ ++.++.+.+.+...+ ..+.++..|+.
T Consensus 10 ~~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTT
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCC
Confidence 4678998888765 333333332 225789999887 666666655555443 34888899987
Q ss_pred CCC-CCCc------CCCCccEEEecC
Q 021550 171 GQG-FPDE------FSGLADSIFLDL 189 (311)
Q Consensus 171 ~~~-~~~~------~~~~~D~V~~d~ 189 (311)
+.. +... ..+.+|++|.+.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nA 112 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANA 112 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 511 1000 014689988653
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=3.1 Score=34.15 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCC-----CCCc--CC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQG-----FPDE--FS 179 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~D~~~~~-----~~~~--~~ 179 (311)
++++|..|++. .++..+++.+. .+.+|+.++.+++.++.+.+.+. ..+ ..+.+...|+.+.. +... ..
T Consensus 2 ~k~vlITGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 56788888654 44444444431 24789999999988777666554 333 23888999987511 1110 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 79 g~id~li~~A 88 (235)
T 3l77_A 79 GDVDVVVANA 88 (235)
T ss_dssp SSCSEEEECC
T ss_pred CCCCEEEECC
Confidence 3689988653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.98 E-value=3.6 Score=38.12 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCEEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-------cC------C-CCcEEEEEecCCCC
Q 021550 109 GCLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG------V-SSFVTVGVRDIQGQ 172 (311)
Q Consensus 109 g~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~g------~-~~~v~~~~~D~~~~ 172 (311)
-.+|..||+|. |.. +..++.. +..|+.+|.+++.++.+++.+.. .+ . .....+ ..|..
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~---G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~-- 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV---GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK-- 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH--
Confidence 35799999987 443 3333332 46899999999988877664321 11 0 011222 23321
Q ss_pred CCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEE
Q 021550 173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~ 211 (311)
.+ ...|+||...+... .++..+...++|+..++.
T Consensus 111 ~~-----~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 111 EL-----STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp GG-----TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HH-----CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 11 45899999888763 466677788888887765
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.91 E-value=2.8 Score=34.76 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC----CCCCc--CCCCc
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----GFPDE--FSGLA 182 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~----~~~~~--~~~~~ 182 (311)
+++||..|++ |.++.++++.+..+..|+.++.+++.++...+ ... +.+...|+.+. .+... ..+.+
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 5 KKIAVVTGAT-GGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IEG-VEPIESDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp -CEEEEESTT-SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------STT-EEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCEEEEEcCC-CHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hcC-CcceecccchHHHHHHHHHHHHhcCCC
Confidence 5678888865 55666777776557899999999887665432 222 77888886531 11110 01468
Q ss_pred cEEEecC
Q 021550 183 DSIFLDL 189 (311)
Q Consensus 183 D~V~~d~ 189 (311)
|++|.+.
T Consensus 77 d~lv~~A 83 (245)
T 3e9n_A 77 DTLVHAA 83 (245)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9988654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=1.2 Score=41.48 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|++|+.+|+|. |......+... +.+|+.+|+++.....+.. .+. . ..+.. ... ..+|+|
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~----~g~----d--v~~le-e~~-----~~aDvV 324 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATM----EGL----Q--VLTLE-DVV-----SEADIF 324 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----E--ECCGG-GTT-----TTCSEE
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----hCC----c--cCCHH-HHH-----HhcCEE
Confidence 4689999999985 44444455554 4699999999887665543 231 1 12222 111 458988
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+.......-+-....+.+++++.++-....
T Consensus 325 i~atG~~~vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 325 VTTTGNKDIIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp EECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred EeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence 865544433334578889999988866543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.85 E-value=2.3 Score=35.37 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=47.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCcCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDEFSG 180 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~~~~ 180 (311)
.++.+||..|++.| ++.++++.+ ..+.+|+.++.+++.++...+.+. ..+.+...|+.+.. +... +
T Consensus 12 ~~~k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~--~ 83 (249)
T 3f9i_A 12 LTGKTSLITGASSG-IGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKT--S 83 (249)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTC--S
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhc--C
Confidence 46788998887654 444444433 125789999999887776655432 23788888887511 1111 4
Q ss_pred CccEEEecC
Q 021550 181 LADSIFLDL 189 (311)
Q Consensus 181 ~~D~V~~d~ 189 (311)
.+|++|.+.
T Consensus 84 ~id~li~~A 92 (249)
T 3f9i_A 84 NLDILVCNA 92 (249)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 689988654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.84 E-value=1.1 Score=38.77 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=53.9
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE------ecC--CC-CCCCCcCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV------RDI--QG-QGFPDEFS 179 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~------~D~--~~-~~~~~~~~ 179 (311)
.+|..+|+|. |......+... +..|+.+|.+++.++..++. +. .... ..+ .. ..... .-
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~~~~~~~~~~~~~-~~ 72 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVANLPIFSPEEIDH-QN 72 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEECCCEECGGGCCT-TS
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEecceeecchhhcc-cC
Confidence 4799999986 44333322221 35899999999877766543 31 1111 001 00 00110 00
Q ss_pred CCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+||+..+.. ..+++.+...++++..++....
T Consensus 73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~ 109 (316)
T 2ew2_A 73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLN 109 (316)
T ss_dssp CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCS
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecC
Confidence 2689999988743 3456677778888877776543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.87 Score=38.46 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcC------
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEF------ 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~-~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~------ 178 (311)
.+.+||..|++ |.++.++++.+. .+.+|+.++. +++.++...+.+...+ ..+.++.+|+.+.. +....
T Consensus 20 ~~k~vlItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 20 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888764 555555555442 2468999988 7777666555555444 23788889987511 11000
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|+||.+.
T Consensus 97 ~~~~d~vi~~A 107 (274)
T 1ja9_A 97 FGGLDFVMSNS 107 (274)
T ss_dssp HSCEEEEECCC
T ss_pred cCCCCEEEECC
Confidence 03689988643
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=0.49 Score=43.50 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|.+|..+|.|. |......++.+ +.+|+++|.++.....|.. .|. .. .++. ..+ ...|+|
T Consensus 209 L~GktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~----~G~----~~--~sL~-eal-----~~ADVV 270 (436)
T 3h9u_A 209 IAGKTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAM----EGY----QV--LLVE-DVV-----EEAHIF 270 (436)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHH-HHT-----TTCSEE
T ss_pred ccCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHH----hCC----ee--cCHH-HHH-----hhCCEE
Confidence 4689999999998 77777777776 4799999999876554432 232 21 1332 112 347998
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
++......-+-......||+|++++-.+...
T Consensus 271 ilt~gt~~iI~~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 271 VTTTGNDDIITSEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp EECSSCSCSBCTTTGGGCCTTEEEEECSSSG
T ss_pred EECCCCcCccCHHHHhhcCCCcEEEEeCCCC
Confidence 8754433222235677889999888665443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=14 Score=32.21 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCC-CcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|..+|+|. |......+..-+....+..+|++++.++. +.......... ..+.+...+ . ..+ ...|+|
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~-~-~a~-----~~aDvV 78 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGE-Y-SDC-----HDADLV 78 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECC-G-GGG-----TTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCC-H-HHh-----CCCCEE
Confidence 46899999987 43333322222223589999999876653 22211111111 124444322 1 223 457999
Q ss_pred EecCCChh--------------h----HHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 186 FLDLPQPW--------------L----AIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 186 ~~d~~~~~--------------~----~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
++..+.+. . +.+.+.+. .|++.+++++-....+....
T Consensus 79 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~ 133 (317)
T 3d0o_A 79 VICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDILAYAT 133 (317)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHH
T ss_pred EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHH
Confidence 87543221 1 22333343 79999998765554444433
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=87.42 E-value=2.5 Score=35.53 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.++++|..|++. .++.++++.+ ..+.+|+.++.+++.++.+.+.+ + ..+.++..|+.+.. +.. ...
T Consensus 7 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGSAR-GIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 467899888654 4444444433 12578999999988776655443 2 23788889987511 100 001
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 81 g~id~lv~~A 90 (259)
T 4e6p_A 81 GGLDILVNNA 90 (259)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789988654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.32 E-value=1.4 Score=37.40 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCEEEEEcccccH---HHHHHHHHhCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-----
Q 021550 108 PGCLVLESGTGSGS---LTTSLARAVAPTGHVYTF-DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE----- 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~---~~~~la~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~----- 177 (311)
.++++|..|+++|. ++..|++. +.+|+.. ..+++..+...+.+...+ ..+.++..|+.+.. +...
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~---G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 100 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASD---GFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAE 100 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHH---TCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 46789988877653 33334444 4677776 455566666665555544 23888889987511 1000
Q ss_pred -CCCCccEEEecCCC------------hh------------hHHHHHHhcccCCcEEEEecCC
Q 021550 178 -FSGLADSIFLDLPQ------------PW------------LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 -~~~~~D~V~~d~~~------------~~------------~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+.+|++|.+... .| .+++.+.+.++.+|.++..+..
T Consensus 101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 01468998865421 01 2456677778888998877553
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.28 E-value=8.9 Score=32.98 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=61.1
Q ss_pred CEEEEEcccc-cHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|..||+|. |... ..+++. +..|+++|.+++.++.+.+ .|.. ....+.. ... ...|+||+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~---G~~V~~~dr~~~~~~~~~~----~g~~----~~~~~~~-e~~-----~~aDvvi~ 70 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA---GLSTWGADLNPQACANLLA----EGAC----GAAASAR-EFA-----GVVDALVI 70 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHH----TTCS----EEESSST-TTT-----TTCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHH----cCCc----cccCCHH-HHH-----hcCCEEEE
Confidence 5799999886 5433 333332 4689999999988776654 2421 1123332 112 35799999
Q ss_pred cCCChhh---HH---HHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 188 DLPQPWL---AI---PSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~~~~~---~l---~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
..|.+.. ++ +.+...+++|..++-.+.. .....++.+.+.+
T Consensus 71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~ 118 (303)
T 3g0o_A 71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTA 118 (303)
T ss_dssp CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH
Confidence 9987642 22 3445678888877755433 2334455555554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=14 Score=32.44 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=58.9
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CC-CCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GV-SSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~-~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+..+|..+|+|. |......+...+-...++.+|++++.++.....+... .. ...+.+...|.. .+ ...|+
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~--a~-----~~aDv 76 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE--DC-----KDADI 76 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG--GG-----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH--Hh-----CCCCE
Confidence 457899999876 5444333333222348999999988766533323221 11 112454444432 22 45799
Q ss_pred EEecCCChh--------------hHHHHHHhc---ccCCcEEEEecCCHHHHHHHHH
Q 021550 185 IFLDLPQPW--------------LAIPSAKKM---LKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 185 V~~d~~~~~--------------~~l~~~~~~---LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
||+..+.+. ..+..+.+. ..|++.+++++-..+.+.....
T Consensus 77 Vvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~ 133 (326)
T 3pqe_A 77 VCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATW 133 (326)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHH
T ss_pred EEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHH
Confidence 987543211 122222222 3689998887765554444443
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.26 E-value=6 Score=33.32 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=44.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc-CCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE-FSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~-~~~~~D~ 184 (311)
.|+++|.-|.++|. +..+++.+ ..+++|+..|.+.. +.+.+.+...+. .+.....|+.+.. .... ..+.+|+
T Consensus 8 ~GKvalVTGas~GI-G~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 8 EGRKALVTGANTGL-GQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 47788888877754 33333222 23588999998753 233334444443 3788889987621 1110 1267999
Q ss_pred EEecC
Q 021550 185 IFLDL 189 (311)
Q Consensus 185 V~~d~ 189 (311)
++.+.
T Consensus 83 LVNNA 87 (247)
T 4hp8_A 83 LVNNA 87 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.18 E-value=2.7 Score=35.86 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE------ 177 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~-~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~------ 177 (311)
..+.++|..|++.| ++.++++.+ ..+.+|+.++. +++.++...+.+...+ ..+.++..|+.+.. +...
T Consensus 27 ~~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 27 KARPVAIVTGGRRG-IGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp CCCCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCCH-HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35678898887654 333444333 12578999985 6777666666665544 34888999997521 1100
Q ss_pred CCCCccEEEecC
Q 021550 178 FSGLADSIFLDL 189 (311)
Q Consensus 178 ~~~~~D~V~~d~ 189 (311)
..+.+|++|.+.
T Consensus 104 ~~g~iD~lvnnA 115 (280)
T 4da9_A 104 EFGRIDCLVNNA 115 (280)
T ss_dssp HHSCCCEEEEEC
T ss_pred HcCCCCEEEECC
Confidence 013689988654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=11 Score=32.69 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=54.4
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh----cCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
+|..+|+|. |......+..-+....|+.+|++++.++.....+.. .... ..+.. .|.. . + ...|+
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~--~~i~~t~d~~-~-l-----~~aDv 72 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFD--TKVTGSNDYA-D-T-----ANSDI 72 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCC--CEEEEESCGG-G-G-----TTCSE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCC--cEEEECCCHH-H-H-----CCCCE
Confidence 688899987 443333333211246899999998877643322211 1112 22222 3332 1 2 45899
Q ss_pred EEecCCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 185 IFLDLPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 185 V~~d~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
||+..+.|. .+.+.+.+. .|++.+++++-.........
T Consensus 73 Viiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~~~~~~~ 128 (310)
T 1guz_A 73 VIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLDIMTHVA 128 (310)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHHHHHHHH
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchHHHHHHH
Confidence 998665331 223333333 58999887755544444333
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=3.9 Score=37.59 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH------------HhcCCCCcEEEEEecCCCCC
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF------------ERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~------------~~~g~~~~v~~~~~D~~~~~ 173 (311)
..|.+.-.+|.|. |..+...+... +..|+++|++++.++..++.- ...-...++.+. .|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td~---- 81 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TTP---- 81 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SSC----
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cch----
Confidence 4678899999997 66444333332 479999999999888765420 000001113222 121
Q ss_pred CCCcCCCCccEEEecCCChh--------------hHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHH
Q 021550 174 FPDEFSGLADSIFLDLPQPW--------------LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESL 226 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~--------------~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l 226 (311)
...|+||+..|.|. ...+.+.+.|++|..++.-+... ....++.+.+
T Consensus 82 ------~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i 143 (431)
T 3ojo_A 82 ------EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV 143 (431)
T ss_dssp ------CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred ------hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence 24799998877653 33567778888887666544322 2334444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 311 | ||||
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-82 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 5e-76 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 8e-67 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 1e-57 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 9e-20 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-10 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 4e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-07 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 5e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-05 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 8e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 9e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 6e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 9e-04 | |
| d2cl5a1 | 214 | c.66.1.1 (A:3-216) Catechol O-methyltransferase, C | 0.003 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.003 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.004 |
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 249 bits (637), Expect = 3e-82
Identities = 67/323 (20%), Positives = 130/323 (40%), Gaps = 31/323 (9%)
Query: 14 RCIKEGDLVIVYE---RHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF 70
R + G+L++ K ++ + +GA +GK G ++ S+ G
Sbjct: 1 RPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQ 60
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
L P E + +++ T I + DI+ ++ +++ PG VLE+G+GSG ++ L++AV
Sbjct: 61 YMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAV 120
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVS----------SFVTVGVRDIQGQGFPDEFSG 180
G V +F+ + A+++++ S V +DI G D S
Sbjct: 121 GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSL 179
Query: 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR---LNFTDIRTFE 237
D++ LD+ P + +P LK G+ + I QV + +R L + + E
Sbjct: 180 TFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISE 239
Query: 238 ILLRTYEIR-------------QWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNN 284
+++R + + + + + ++ + Q + P
Sbjct: 240 VIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYG 299
Query: 285 S-TVMARPNGEARGHTGYLTFAR 306
S +ARP GHT +L R
Sbjct: 300 SFPYVARPVHWQPGHTAFLVKLR 322
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 231 bits (591), Expect = 5e-76
Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 46/295 (15%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
G+ V + + + + + F G+ H IG GS+V S+ G +L
Sbjct: 4 FSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLR 63
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
P + + + Q++Y D + ++ ++ PG VLE+G GSG+LT SL RAV P G
Sbjct: 64 PLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQ 123
Query: 136 VYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
V +++ A AR + + V D+ PD D LD+ PW
Sbjct: 124 VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS---VDRAVLDMLAPW 180
Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEIRQWRAD 251
+ + ++L G+L + + Q+ R E+LR +T+ R +E L R + +
Sbjct: 181 EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVV----- 235
Query: 252 CGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
G RP RGHT +L R
Sbjct: 236 -GLAV---------------------------------RPQHSMRGHTAFLVATR 256
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 208 bits (529), Expect = 8e-67
Identities = 74/296 (25%), Positives = 122/296 (41%), Gaps = 44/296 (14%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV 71
+K GD V++ + V + ++ G ++ K G ++ ++ G
Sbjct: 7 VADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKG 66
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
Y+L P+ + + RTQI+Y D SF+ M L++ G ++++G GSG++ LARAV
Sbjct: 67 YILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG 126
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ 191
+G V+ ++ E+ A A + + G+ VT+ VRDI + D++FLD+P
Sbjct: 127 SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV----DALFLDVPD 182
Query: 192 PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWRA 250
PW I + LK G + P QVQ + + L+ L F I +E L R Y+
Sbjct: 183 PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPV---- 238
Query: 251 DCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
RP HT Y+ FA
Sbjct: 239 -----------------------------------PERLRPVDRMVAHTAYMIFAT 259
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 184 bits (467), Expect = 1e-57
Identities = 49/261 (18%), Positives = 86/261 (32%), Gaps = 44/261 (16%)
Query: 47 GAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLEL 106
G H G + +P + V+ TQI+ D S++IM L
Sbjct: 24 GKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGL 83
Query: 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166
PG +LE G GSG++++ + A+ G + + E A ++ V
Sbjct: 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 143
Query: 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
DI + + D+P PW + M+K + + P +Q +++ SL
Sbjct: 144 SDIADFISDQMYDA----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSL 199
Query: 227 R-LNFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNS 285
+ T E++ R +R+
Sbjct: 200 SASGMHHLETVELMKRRILVREGA------------------------------------ 223
Query: 286 TVMARPNGEARGHTGYLTFAR 306
RP + HT ++TFA
Sbjct: 224 ---TRPASDDLTHTAFITFAI 241
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 84.0 bits (207), Expect = 9e-20
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154
A I + + PG VL G SG+ + ++ V G ++ +F + E
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ + + Q + I +A+ LK+ G ++
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179
Query: 213 SPCI------EQVQRSCESLRL-NFTDIRTFEIL 239
S I EQV R E F I +
Sbjct: 180 SRSIDVTKEPEQVFREVERELSEYFEVIERLNLE 213
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 65.9 bits (160), Expect = 2e-13
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153
+A + L+L VL G SG+ + LA V G +Y ++ + E
Sbjct: 42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELV 100
Query: 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW---LAIPSAKKMLKQDG--I 208
+ D I+ D+ Q + +A+ LK+ G +
Sbjct: 101 RERNNIIPLLFDASKPW---KYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157
Query: 209 LCSFSPCI------EQVQRSCES-LRLNFTDIRTFEIL 239
+ + I E+V +S + +F ++ ++
Sbjct: 158 IMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLM 195
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159
++ E + ++ G G+G +T VY D + + ++ + +R G+
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG 81
Query: 160 SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQV 219
VT+ D +A + + K LK G + + +E
Sbjct: 82 DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI-LRIIKDKLKPGGRIIVTAILLETK 140
Query: 220 QRSCESLR 227
+ E LR
Sbjct: 141 FEAMECLR 148
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 4e-08
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 2/159 (1%)
Query: 83 LVLSHRTQILYIADISFVIMY--LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFD 140
+ + I ++ + +L G L+ G+GSG LT AR V TG V D
Sbjct: 49 QSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGID 108
Query: 141 FHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAK 200
++ + + + + + V+ + G G + +
Sbjct: 109 HIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI 168
Query: 201 KMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEIL 239
LK G L Q + +L I+ ++
Sbjct: 169 DQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLM 207
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
+ + +L G +G+ + +A G VY ++ + + +
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPIL 128
Query: 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212
Q E + Q + I +AK LK+ G
Sbjct: 129 GDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 44.5 bits (104), Expect = 5e-06
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG-----HVYTFDFHEQRAASAREDF 153
+ L PG +L+ G+GSG LT R + G + + + ++ +
Sbjct: 71 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 130
Query: 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL------DLPQPWLAIPSAKKMLKQDG 207
S + + ++G G + D P + L G
Sbjct: 131 NTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELI------NQLASGG 184
Query: 208 IL 209
L
Sbjct: 185 RL 186
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (99), Expect = 3e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+ +I +L +VL+ G G+G L+ A+ A HV D A+E E G
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEM-AKELVELNG 84
Query: 158 VSSFVTVGVRDIQGQGFPDE-----FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211
S +T+ ++ P S L + + L + G++
Sbjct: 85 FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (95), Expect = 8e-05
Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 33/206 (16%)
Query: 19 GDLVIV-----YERH---------DCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF 64
GD++++ E + + + V + + G ++
Sbjct: 16 GDVLLLPLRPELEPYKHRIAEVYAEVLGVKTVLRKGHIHGETRKPDYELLYGSDTVTVHV 75
Query: 65 SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTT 124
N G Y L +++ + + +A + P LV++ G G L
Sbjct: 76 EN--GIKYKLDVAKIMFSPAN--VKERVRMAKV--------AKPDELVVDMFAGIGHL-- 121
Query: 125 SLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184
SL AV V + E+ V ++ +AD
Sbjct: 122 SLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSA----YNMDNRDFPGENIADR 177
Query: 185 IFL-DLPQPWLAIPSAKKMLKQDGIL 209
I + + + IP A + K I+
Sbjct: 178 ILMGYVVRTHEFIPKALSIAKDGAII 203
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 9e-05
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 7/159 (4%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR--EDFE 154
+ + L + PG +L+ G+GSG + + AR TG A R E
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 81
Query: 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214
V + + A I + + LK GI+ P
Sbjct: 82 SERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELL---AQSLKPGGIMLIGEP 138
Query: 215 CIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQWRADCG 253
Q+ + E + + + L + D G
Sbjct: 139 YWRQLPATEEIAQ--ACGVSSTSDFLTLPGLVGAFDDLG 175
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
F+ + +VL+ G G+G L+ A+A A V D E A +
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEI-LYQAMDIIRLNK 81
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPS-----AKKMLKQDGILC 210
+ +T+ I+ P E + S ++ + ++ K L + G +
Sbjct: 82 LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.9 bits (87), Expect = 9e-04
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)
Query: 89 TQILYIAD--ISFVI-MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR 145
T+ LY D +SF++ ++ +++ G G G L L + D E
Sbjct: 5 TRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET- 63
Query: 146 AASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFLDLPQPWLAIPSAKKMLK 204
A + D D++ + + L + P + +K
Sbjct: 64 -LLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVK 122
Query: 205 QDGILCSFSP 214
+ G + F P
Sbjct: 123 KGGKIICFEP 132
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.003
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 11/136 (8%)
Query: 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171
VLE G G +AR + P + T + + AA ++ G+ VT+ Q
Sbjct: 60 VLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 119
Query: 172 QGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS----FSPCIEQVQ 220
+ D++ + D P + +L++ +L + + +
Sbjct: 120 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLA 179
Query: 221 RSCESLRLNFTDIRTF 236
S T ++
Sbjct: 180 YVRGSSSFECTHYSSY 195
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.1 bits (82), Expect = 0.003
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 13/135 (9%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
++++ L VL+ G+G + L V D + A R + +
Sbjct: 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP 105
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------------DLPQPWLAIPSAKKMLK 204
+ + D++ D + LA+ + M++
Sbjct: 106 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR 165
Query: 205 QDGILCSFSPCIEQV 219
G+L + +
Sbjct: 166 PGGLLVIDHRNYDYI 180
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 35.7 bits (81), Expect = 0.004
Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 9/130 (6%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
I ++ L G VL+ G G G RA G Y D E AR
Sbjct: 13 IKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNM 70
Query: 157 GVSSFVTVGVRDIQGQGFPDEFS-------GLADSIFLDLPQPWLAIPSAKKMLKQDGIL 209
V +D G+ F +A + + L+ G
Sbjct: 71 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 130
Query: 210 CSFSPCIEQV 219
P + +
Sbjct: 131 IMTVPSRDVI 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 100.0 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 100.0 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 100.0 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 100.0 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.8 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.73 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.72 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.7 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.66 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.65 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.63 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.62 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.6 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.6 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.6 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.59 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.58 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.57 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.57 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.56 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.56 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.54 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.54 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.48 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.48 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.46 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.45 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.44 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.44 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.42 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.41 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.39 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.39 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.39 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.39 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.37 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.36 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.35 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.33 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.33 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.33 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.32 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.31 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.28 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.27 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.25 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.25 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.22 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.19 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.12 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.07 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.0 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.0 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.99 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.97 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.97 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.95 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.94 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.92 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.91 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.9 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.86 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.82 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.81 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.81 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.77 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.74 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.71 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.54 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.5 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.47 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.47 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.44 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.44 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.43 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 98.38 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.37 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.35 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 98.3 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.27 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 98.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 98.25 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.24 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 98.21 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 98.19 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 98.16 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 98.03 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 98.0 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.89 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.84 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.77 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.7 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 97.61 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.59 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.41 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.38 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.25 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.25 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.12 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.69 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.52 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.48 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.45 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.42 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.41 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.41 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.92 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.8 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.55 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.27 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.85 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.56 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.36 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.11 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.08 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.88 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.69 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.63 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.03 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.91 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.78 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.67 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.49 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.37 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.8 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.64 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 91.6 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.37 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.24 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 91.21 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.2 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.67 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.53 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.51 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.04 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.01 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.8 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.79 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 89.58 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 89.53 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.42 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.33 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 89.22 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 89.18 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.65 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.55 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.53 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 88.46 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 88.02 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 87.75 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 87.61 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.46 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 87.27 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 86.97 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.61 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 86.43 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 85.85 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.85 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.77 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.71 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.36 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 85.28 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 85.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.93 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 84.54 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.49 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 84.47 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 84.46 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 84.37 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 83.74 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 83.24 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 82.28 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 81.81 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.72 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 81.26 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 81.2 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.07 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 80.98 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 80.97 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 80.88 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 80.43 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 80.36 |
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.3e-57 Score=394.21 Aligned_cols=255 Identities=28% Similarity=0.472 Sum_probs=241.6
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceee
Q 021550 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQIL 92 (311)
Q Consensus 13 ~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 92 (311)
+++|++||+|++...+++++.+.+.+|+.++|++|.++|+++||+++|+.+.++.|..+++++|++++|...+++++|++
T Consensus 1 ~g~f~~Gd~Vll~~~~~~~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~t~~g~~~~v~~pt~~~~~~~~~r~tqii 80 (264)
T d1i9ga_ 1 TGPFSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVI 80 (264)
T ss_dssp CCSCCTTCEEEEEETTCCEEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCCEEEEECCCHHHHHTTSCSCSCCC
T ss_pred CCCCCCCCEEEEEECCCCEEEEEECCCCEEEcCCeeEeHHHhcCCCCCeEEEeCCCCEEEEeCCCHHHHHhhccCCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GVSSFVTVGVRDIQ 170 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~v~~~~~D~~ 170 (311)
||+|+++|+.++++.||++|||+|||+|.++++||+.++|.++|+++|+++++++.|++|++.. +...++.+.++|+.
T Consensus 81 ypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~ 160 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 160 (264)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred chHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999865 33455999999998
Q ss_pred CCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeeceeeEEeee
Q 021550 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRTYEIRQW 248 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~~~v~~~ 248 (311)
+..+++ +.||+||+|+|+||.++.++.++|||||++++|+|+.+|+.++.+.|+. +|.+++++|.+.|+|++...
T Consensus 161 ~~~~~~---~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l~R~~~v~~~ 237 (264)
T d1i9ga_ 161 DSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGL 237 (264)
T ss_dssp GCCCCT---TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCCCCCEEEETT
T ss_pred cccccC---CCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEEEEEEEeccC
Confidence 767777 8999999999999999999999999999999999999999999999975 59999999999999999976
Q ss_pred eccCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 249 RADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
. +||.++|+||||||+||||.+
T Consensus 238 ~---------------------------------------~RP~~~~vgHTgfl~~ark~~ 259 (264)
T d1i9ga_ 238 A---------------------------------------VRPQHSMRGHTAFLVATRRLA 259 (264)
T ss_dssp E---------------------------------------EEECSCCCCCSCEEEEEEBCC
T ss_pred e---------------------------------------eCCCCCCccchHHHhhhhhcc
Confidence 5 799999999999999999975
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-54 Score=378.44 Aligned_cols=255 Identities=30% Similarity=0.506 Sum_probs=241.8
Q ss_pred cCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCcee
Q 021550 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI 91 (311)
Q Consensus 12 ~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 91 (311)
..+.|++||+|++...+++++.+.+.+|+.++|++|.++|+++||+++|+.+.++.|..+++++|++++|...+++++|+
T Consensus 7 ~~~~~~~gd~v~l~~~~~~~~~~~l~~~~~~~t~~G~~~~~~iig~~~G~~v~~~~g~~~~~~~p~~~d~~~~~~r~~qi 86 (266)
T d1o54a_ 7 VADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQI 86 (266)
T ss_dssp GGGCCCTTCEEEEEETTSCEEEEECCTTCEEEETTEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCC
T ss_pred ccCcCCCCCEEEEEeCCCCEEEEEECCCCEEECCCeEEeHHHhcCCCCCeEEEecCCCeEEEECCCHHHHHhhccCCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+||+|+++|+.+++++||++|||+|||+|.++..+|+.+++.++|+++|+++++++.|+++++..++.+++.+...|+.
T Consensus 87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~- 165 (266)
T d1o54a_ 87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS- 165 (266)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-
T ss_pred cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-
Confidence 9999999999999999999999999999999999999998899999999999999999999999998777999999986
Q ss_pred CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeec
Q 021550 172 QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRA 250 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~ 250 (311)
..++. ..+|.|++|+|+||.+++++.++|||||++++|+|+.+|+.++.+.|++ +|.+++++|.+.|+|++.+..
T Consensus 166 ~~~~~---~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E~l~R~~~~~~~~- 241 (266)
T d1o54a_ 166 EGFDE---KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVPER- 241 (266)
T ss_dssp GCCSC---CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCCEECCTTS-
T ss_pred ccccc---cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEEEEEEEEEecCCc-
Confidence 45555 7899999999999999999999999999999999999999999999998 799999999999999998765
Q ss_pred cCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 251 DCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
+||.++|.||||||+||||.+
T Consensus 242 --------------------------------------vRP~~~~vgHTgfl~~ark~~ 262 (266)
T d1o54a_ 242 --------------------------------------LRPVDRMVAHTAYMIFATKVC 262 (266)
T ss_dssp --------------------------------------CEECSCCCCCSCEEEEEEECS
T ss_pred --------------------------------------cCCCCCCcchHHHHHHheecc
Confidence 699999999999999999986
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-54 Score=387.97 Aligned_cols=291 Identities=21% Similarity=0.299 Sum_probs=223.6
Q ss_pred CCCCCCEEEEEEcCCc---EEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCcee
Q 021550 15 CIKEGDLVIVYERHDC---MKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQI 91 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~---~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 91 (311)
+|++||+|+++..+++ ++.+++.+|+.++|++|.++|+++||+++|+.+.++.|..|++++|++++|...+++++|+
T Consensus 2 ~f~~Gd~vl~~~~~~~~~~~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~~~~g~~~~v~~Pt~~d~~~~~~r~tqi 81 (324)
T d2b25a1 2 PFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAI 81 (324)
T ss_dssp CCCTTCEEEEEC----CCCEEEEECCSSCBCC-----CBHHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCC
T ss_pred CCCCCCEEEEEecCCceEEEEEEEecCCcEEecCceeeeHHHhcCCCCCcEEEeCCCCEEEEeCCCHHHHhhccCCCCcc
Confidence 6999999999987775 5778999999999999999999999999999999999998899999999999999999999
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc----------CCCCc
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT----------GVSSF 161 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------g~~~~ 161 (311)
+||+|+++|+.++++.||++|||+|||+|.++++||+.+++.++|+++|+++++++.|++|++.+ +..++
T Consensus 82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999864 23456
Q ss_pred EEEEEecCCCCC--CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh---cCceeeEE
Q 021550 162 VTVGVRDIQGQG--FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL---NFTDIRTF 236 (311)
Q Consensus 162 v~~~~~D~~~~~--~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~f~~~~~~ 236 (311)
+.+.++|+.... ++. ..||.||+|+|+||.++.++.++|||||+|++|+|+.+|+.++++.|+. +|.+++++
T Consensus 162 v~~~~~di~~~~~~~~~---~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 162 VDFIHKDISGATEDIKS---LTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKIS 238 (324)
T ss_dssp EEEEESCTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred eeEEecchhhcccccCC---CCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEE
Confidence 999999987532 233 6899999999999999999999999999999999999999999999985 59999999
Q ss_pred EeeceeeEEeeeeccCCCCCCCC-CCCcccccccccc----------ccCCC---CCCCCCCcceeecCCCCccccceee
Q 021550 237 EILLRTYEIRQWRADCGQGTGGG-SAGSIRHKRKQHL----------IEGSG---EKENPNNSTVMARPNGEARGHTGYL 302 (311)
Q Consensus 237 e~~~r~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~p~~~~~~htgyl 302 (311)
|.+.|.|++.+............ .......+..+.+ +.++. ...+..+..+.+||..+|+||||||
T Consensus 239 E~~~R~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RP~~~~~gHTgyL 318 (324)
T d2b25a1 239 EVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFL 318 (324)
T ss_dssp CCCCCCEEECC------------------------------------------------------CEEECSSCCCCCCEE
T ss_pred EEEeeeeEEecccccccccccccccccccccccccccccccccccccccccccccccCCccCccceeccCCcCcCcceee
Confidence 99999999987654333221100 0000000000000 00000 1112234456689999999999999
Q ss_pred EeEEee
Q 021550 303 TFARLK 308 (311)
Q Consensus 303 ~~a~~~ 308 (311)
|||||+
T Consensus 319 t~aRk~ 324 (324)
T d2b25a1 319 VKLRKV 324 (324)
T ss_dssp EEEEEC
T ss_pred eeeecC
Confidence 999985
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1.1e-45 Score=318.67 Aligned_cols=241 Identities=23% Similarity=0.340 Sum_probs=191.7
Q ss_pred EEEEEcCCcEEEEEecCCCeeecccceeeCcccccC-CCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHH
Q 021550 22 VIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV 100 (311)
Q Consensus 22 V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~-~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i 100 (311)
|+|..+....++ ...+..-+-+|.+.|.++++. +.|..+.++ |..+++++|++++|...+++++|++||+|+++|
T Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~~~~~e~g~~~~~~-g~~~~i~~p~~~~~~~~~~r~~qiiypkD~~~I 77 (250)
T d1yb2a1 2 VILVSEDEYGKF---DESTNSILVKGKMHHLGISRVIEPGDELIVS-GKSFIVSDFSPMYFGRVIRRNTQIISEIDASYI 77 (250)
T ss_dssp CEEECSSCCEEE---ETTTTEEEC-CCEEECC-CCCCCTTCEEEET-TEEEEEECCCGGGHHHHC---------------
T ss_pred eEEEccccccee---ecccceeeecCceeecceecccCCccEEEEC-CeEEEEECCCHHHHHhhCCCCCcccCHHHHHHH
Confidence 456555554443 233323334678888887664 456666554 788899999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
+.+++++||++|||+|||+|.++..+++.+++.++|+++|+++++++.|++|++.++...++++..+|+. ..+++ +
T Consensus 78 i~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~-~~~~~---~ 153 (250)
T d1yb2a1 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA-DFISD---Q 153 (250)
T ss_dssp ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT-TCCCS---C
T ss_pred HHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee-ccccc---c
Confidence 9999999999999999999999999999998899999999999999999999998766566999999997 44565 7
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeeccCCCCCCCC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRADCGQGTGGG 259 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~~~~~~~~~~ 259 (311)
.||.|++|+|+||.+++++.+.|||||++++|+|+.+|+.++.+.|++ +|.+++++|.+.|+|++...+
T Consensus 154 ~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~~~---------- 223 (250)
T d1yb2a1 154 MYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGA---------- 223 (250)
T ss_dssp CEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTC----------
T ss_pred eeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEEeEEEEEcCCc----------
Confidence 899999999999999999999999999999999999999999999998 799999999999999998655
Q ss_pred CCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeec
Q 021550 260 SAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKC 309 (311)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~ 309 (311)
+||.++|.||||||+||||+.
T Consensus 224 -----------------------------~RP~~~mvgHTgfl~~arK~~ 244 (250)
T d1yb2a1 224 -----------------------------TRPASDDLTHTAFITFAIKKS 244 (250)
T ss_dssp -----------------------------CCCGGGGSCEEEEEEEEEECC
T ss_pred -----------------------------cCCCCCCccchhhhhhhcccC
Confidence 699999999999999999964
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=3.6e-19 Score=146.25 Aligned_cols=136 Identities=19% Similarity=0.167 Sum_probs=114.2
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
-.+++..+++.+|++|||+|||+|.+++.+++. .++|+++|+++++++.|++|++.+++.++++++++|+.+...+.
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 356888999999999999999999999998875 47999999999999999999999999777999999987533343
Q ss_pred cCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEe
Q 021550 177 EFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 177 ~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
..||.|+++.+ ....+++.+.+.|+|||++++.....++.....+.++....+.+..+.
T Consensus 99 ---~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~~~~ 159 (186)
T d1l3ia_ 99 ---PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNITEL 159 (186)
T ss_dssp ---CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ---CCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEEEEE
Confidence 68999998764 456789999999999999999888888888888888873223444443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=1.5e-17 Score=140.12 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=103.2
Q ss_pred CCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHH---HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcE
Q 021550 59 FGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVI---MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135 (311)
Q Consensus 59 ~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~ 135 (311)
||+.+....+..++.+.|. +.+..+.++ +.+.++||++|||+|||+|..+.++++.+++.++
T Consensus 36 yge~~~~~~~~e~R~w~p~---------------rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~ 100 (227)
T d1g8aa_ 36 YGERVIKWEGEEYRIWNPN---------------RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGK 100 (227)
T ss_dssp TTCCEEEETTEEEEECCTT---------------TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSE
T ss_pred cCceEEEcCCeeEEEECCC---------------ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCE
Confidence 6776666566666665553 234444454 4456899999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEe
Q 021550 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 136 v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+++|+++.+++.++++++..+ + +..+..|+............+|+|+.+.+.+ +.++.++.+.|||||.+++.
T Consensus 101 V~aVD~s~~~l~~a~~~a~~~~--~-~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 101 IFGIEFSPRVLRELVPIVEERR--N-IVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEESCHHHHHHHHHHHSSCT--T-EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhcC--C-ceEEEEECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence 9999999999999998876543 3 7778888764211111126799999887654 56899999999999998864
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=1.4e-18 Score=147.64 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=98.5
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
...++++.++++||.+|||+|||+|.++..+++. .++|+++|+|+.+++.|++++...+..+ +.+.++|+.+.+++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSC
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccccc-cccccccccccccc
Confidence 3456889999999999999999999999999987 3789999999999999999999888876 99999999887777
Q ss_pred CcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 176 DEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 176 ~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+ ++||+|++ +.+++..+++++.++|+|||++++.
T Consensus 80 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 80 D---DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 7 89999985 5678899999999999999998873
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=2.9e-18 Score=145.05 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=98.0
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
++..+++.++++++++|||+|||+|.++..+++. ..+|+++|+|+++++.|++++...+..+ +++.++|+.+.+++
T Consensus 3 ~~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 3 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFT 78 (231)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSC
T ss_pred hHHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccc-cccccccccccccc
Confidence 5567899999999999999999999999999877 3699999999999999999999888876 99999999877777
Q ss_pred CcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 176 DEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 176 ~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. ++||+|++ +.+++..++.++.++|+|||++++.
T Consensus 79 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 79 D---ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp T---TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 6 89999985 5678999999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1e-17 Score=143.27 Aligned_cols=115 Identities=23% Similarity=0.138 Sum_probs=101.5
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
..+..+..+...+++.||++|||||||+|.++..+++.. +++|+++|+|+.+++.|+++....|+.+++++..+|+.+
T Consensus 17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence 455566678899999999999999999999999999874 479999999999999999999999998889999999985
Q ss_pred CCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. +++ ++||+|++ +.+++..+++++.+.|||||++++.
T Consensus 95 ~-~~~---~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 95 Y-VAN---EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp C-CCS---SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred c-ccc---CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence 3 454 78999985 5678889999999999999999985
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=8.8e-18 Score=140.67 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=100.1
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
.+..|...+.+++.+++++|++|||+|||+|.++..+++.+++.++|+++|+++++++.|+++++..++.+ +.+..+|.
T Consensus 57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~ 135 (213)
T d1dl5a1 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDG 135 (213)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG
T ss_pred eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCch
Confidence 35567888889999999999999999999999999999999888999999999999999999999988877 88889998
Q ss_pred CCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....... +.||+|+++..-. .+.+.+.+.|+|||++++..
T Consensus 136 ~~~~~~~---~~fD~I~~~~~~~-~~p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 136 YYGVPEF---SPYDVIFVTVGVD-EVPETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCGGG---CCEEEEEECSBBS-CCCHHHHHHEEEEEEEEEEB
T ss_pred HHccccc---cchhhhhhhccHH-HhHHHHHHhcCCCcEEEEEE
Confidence 7433333 6899998764322 24466788899999998743
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.72 E-value=2.8e-17 Score=143.49 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=98.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+.....+.++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++....|+.+++++..+|+.+.++++
T Consensus 58 ~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~-- 133 (282)
T d2o57a1 58 ELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED-- 133 (282)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT--
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc--
Confidence 35556688999999999999999999999885 47999999999999999999999999888999999998877776
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++||+|++ +.+++..++.++.++|||||++++..
T Consensus 134 -~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 134 -NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp -TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence 89999974 67888999999999999999998853
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.7e-17 Score=137.75 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=102.3
Q ss_pred cCCceeeecccHHHHHHhc--CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC----
Q 021550 86 SHRTQILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---- 159 (311)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---- 159 (311)
..+..+..|...+.+++.+ +++||++|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++.+.++.
T Consensus 52 ~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~ 131 (224)
T d1i1na_ 52 GFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS 131 (224)
T ss_dssp ETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred cchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccc
Confidence 3455677788888999988 7899999999999999999999999988999999999999999999999876642
Q ss_pred CcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 160 SFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 160 ~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+++.+..+|......+. +.||+|+++...+ ...+.+.+.|||||++++..
T Consensus 132 ~~~~~~~gD~~~~~~~~---~~fD~I~~~~~~~-~ip~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 132 GRVQLVVGDGRMGYAEE---APYDAIHVGAAAP-VVPQALIDQLKPGGRLILPV 181 (224)
T ss_dssp SSEEEEESCGGGCCGGG---CCEEEEEECSBBS-SCCHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEeecccccchh---hhhhhhhhhcchh-hcCHHHHhhcCCCcEEEEEE
Confidence 34889999987433333 6899999865433 24567889999999999754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=2e-16 Score=130.46 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=108.4
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~~~ 177 (311)
.+++.+.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++..+++.+ ++++..+|+.+ .+++
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~- 117 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD- 117 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT-
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc-
Confidence 4778889999999999999999999998876 4689999999999999999999888764 58999999874 5555
Q ss_pred CCCCccEEEecCCCh------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 178 FSGLADSIFLDLPQP------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|++++|-. ..+++.+.+.|+|||.+++..........+...+.+.|.+++.+.. ...|.+.
T Consensus 118 --~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~-~~gf~vl 189 (194)
T d1dusa_ 118 --RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTI-KGGYRVL 189 (194)
T ss_dssp --SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEE-ETTEEEE
T ss_pred --CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEe-cCCcEEE
Confidence 7899999987722 3578999999999999877655554445555556555555554332 2345544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.67 E-value=5.8e-16 Score=128.90 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=97.4
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.++++||++|||+|||+|..+.++++.+ +.++|+++|+++.+++.|++++...+ + +.++..|+............+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~--n-i~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERN--N-IIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCS--S-EEEECSCTTCGGGTTTTCCCE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccC--C-ceEEEeeccCccccccccceE
Confidence 4678999999999999999999999997 56899999999999999999887653 4 899999987533332222468
Q ss_pred cEEEecCCCh---hhHHHHHHhcccCCcEEEEec---------CCHHHHHHHHHHHhhcCceeeEE
Q 021550 183 DSIFLDLPQP---WLAIPSAKKMLKQDGILCSFS---------PCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 183 D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~---------~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
|+|+.+.+.+ ..++.++.++|||||.+++.. +...........+.++|..++.+
T Consensus 127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i 192 (209)
T d1nt2a_ 127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG 192 (209)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 8887776544 357899999999999998742 11233444445555567655543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=3e-15 Score=126.26 Aligned_cols=159 Identities=15% Similarity=0.192 Sum_probs=110.9
Q ss_pred CCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHH---HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcE
Q 021550 59 FGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVI---MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135 (311)
Q Consensus 59 ~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~ 135 (311)
||+.+....+..++...|... +.++.++ +.+.++||++|||+|||+|..+.++++.. +.+.
T Consensus 37 y~e~~~~~~~~e~r~w~p~rs---------------klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~ 100 (230)
T d1g8sa_ 37 YDEKIIKIGDEEYRIWNPNKS---------------KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGI 100 (230)
T ss_dssp SSCCEEEETTEEEEECCTTTC---------------HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSE
T ss_pred cCceeeecCCceeeeECCCcc---------------HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCE
Confidence 677666555555665555432 3333343 35568999999999999999999999974 7899
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecC---CChhhHHHHHHhcccCCcEEEE
Q 021550 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDL---PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 136 v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~---~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
|+++|+|+.+++.|++++... .+ +.++..|..... +.. ....+|+++.+. .++..++.++.+.|||||.+++
T Consensus 101 V~aVDiS~~~i~~a~~~a~~~--~n-i~~i~~d~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 101 VYAIEYAPRIMRELLDACAER--EN-IIPILGDANKPQEYAN-IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEEESCHHHHHHHHHHTTTC--TT-EEEEECCTTCGGGGTT-TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHhhh--cc-cceEEEeeccCccccc-ccceeEEeeccccchHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999876543 33 778888887522 222 113355555544 3456679999999999999887
Q ss_pred e---------cCCHHHHHHHHHHHhh-cCceeeEEE
Q 021550 212 F---------SPCIEQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 212 ~---------~~~~~~~~~~~~~l~~-~f~~~~~~e 237 (311)
. .+......+..+.|++ +|..++..+
T Consensus 177 ~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~id 212 (230)
T d1g8sa_ 177 AIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD 212 (230)
T ss_dssp EEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 5 2223445666677776 787766554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.1e-16 Score=135.26 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=98.9
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.++|++|||+|||+|.+++.+++. +.+|+++|+++.+++.|++|++.+++. +.+..+|+.. .++. ++||+|
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~-~~~~---~~fD~V 188 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA-ALPF---GPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH-HGGG---CCEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccc-cccc---cccchh
Confidence 578999999999999999887764 478999999999999999999999885 5678888763 3444 789999
Q ss_pred EecCCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEE
Q 021550 186 FLDLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 186 ~~d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~ 236 (311)
+.+... ...+++.+.+.|||||++++.....++...+.+.+++ +|..++..
T Consensus 189 ~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 189 VANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred hhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence 987642 3467789999999999999765556777788888877 67665544
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=7.6e-16 Score=128.32 Aligned_cols=121 Identities=26% Similarity=0.322 Sum_probs=101.1
Q ss_pred cCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 86 SHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
..+..+..|...+.+++.++++++++|||||||+|+.+..+++.+ +++|+++|.+++.++.|++++...++.+ +.+.
T Consensus 56 ~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~ 132 (215)
T d1jg1a_ 56 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKN-VHVI 132 (215)
T ss_dssp STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEE
T ss_pred chhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCce-eEEE
Confidence 345567788888999999999999999999999999999999886 3689999999999999999999999887 9999
Q ss_pred EecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+|.. ..++.. +.||.|++....+ ..-..+.+.|+|||++++..
T Consensus 133 ~gd~~-~g~~~~--~pfD~Iiv~~a~~-~ip~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 133 LGDGS-KGFPPK--APYDVIIVTAGAP-KIPEPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp ESCGG-GCCGGG--CCEEEEEECSBBS-SCCHHHHHTEEEEEEEEEEE
T ss_pred ECccc-cCCccc--CcceeEEeecccc-cCCHHHHHhcCCCCEEEEEE
Confidence 99997 455542 7899999754432 23355778899999998743
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=2.3e-15 Score=124.63 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=100.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V 185 (311)
++..|||||||+|..+..+|+. .|+..++|+|+++.++..|.+++...++.| +.++.+|+... .++. +++|.|
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~---~~~d~v 103 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEP---GEVKRV 103 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCT---TSCCEE
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCc---hhhhcc
Confidence 4568999999999999999998 488999999999999999999999999987 99999998752 2555 789999
Q ss_pred EecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 186 FLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++..|+|| .+++.+.++|||||.|++.+........+.+.+.+
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~ 159 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 159 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence 98888775 58999999999999999888777777777777766
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=1.5e-15 Score=127.93 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+|+.+|||+|||+|..+..+++.+. ++.+|+|+|+|++|++.|+++++..+...++.+...|+.+ ++. ..+|+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~~~---~~~d~ 111 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--VEI---KNASM 111 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--CCC---CSEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--ccc---cccee
Confidence 57889999999999999999998653 5789999999999999999999887777778888888764 444 56788
Q ss_pred EEec-------CCChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLD-------LPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d-------~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|++. ..++..+|+++.+.|+|||.+++..
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence 7752 2356689999999999999999853
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.4e-15 Score=127.43 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+.. +.++..|+.+.+++. ++||+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~~~---~~fD~I 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFED---KTFDYV 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCSCT---TCEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccc--ccccccccccccccC---cCceEE
Confidence 468899999999999999999876 579999999999999999998876643 678889998777776 789999
Q ss_pred Eec-----CC--ChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 186 FLD-----LP--QPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 186 ~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
++. .+ +...+|.++.++|||||++++..++.
T Consensus 107 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 107 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 852 23 44568999999999999998876654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.60 E-value=1.8e-14 Score=119.09 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=100.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V 185 (311)
....|||||||+|.++..+|+.. |+..++|+|+++.++..|.+++...++.| +.+..+|+.. ..++. .++|.|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~---~~~~~i 105 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFED---GEIDRL 105 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCT---TCCSEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccC---Cceehh
Confidence 34589999999999999999985 78999999999999999999999999987 9999999875 23454 789999
Q ss_pred EecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 186 FLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++..|+|| .+|+.+.+.|+|||.|.+.+...+......+.+..
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~ 161 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ 161 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHH
Confidence 99999886 57999999999999999888777777666666655
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.60 E-value=1.8e-15 Score=126.83 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=93.9
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+..+..|...+.+++.+++++|++|||+|||+|+++..+++. .++|+++|+++++++.|++++.. .. ++.++.+
T Consensus 50 g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~--~~-nv~~~~~ 123 (224)
T d1vbfa_ 50 GINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSY--YN-NIKLILG 123 (224)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTT--CS-SEEEEES
T ss_pred CCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhc--cc-ccccccC
Confidence 345667777788999999999999999999999999998887 47999999999999999998764 33 4999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|.. ..+++. ++||+|++....+ ...+.+.+.|+|||+|++.
T Consensus 124 d~~-~g~~~~--~pfD~Iiv~~a~~-~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 124 DGT-LGYEEE--KPYDRVVVWATAP-TLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp CGG-GCCGGG--CCEEEEEESSBBS-SCCHHHHHTEEEEEEEEEE
T ss_pred chh-hcchhh--hhHHHHHhhcchh-hhhHHHHHhcCCCCEEEEE
Confidence 987 455542 6899999865422 3456678899999999874
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=6.2e-15 Score=128.02 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..+++.++++||++|||||||.|.++..+++.. +.+|+++|+|+++++.|++++...++...+.+...|... ++
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--~~- 115 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FA- 115 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CC-
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh--hc-
Confidence 3458889999999999999999999999999886 479999999999999999999999998778888888753 33
Q ss_pred cCCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||.|++ +++.. ..+++++.++|||||.+++-
T Consensus 116 ---~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 116 ---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp ---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred ---cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence 68999974 34433 46899999999999999873
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=4.5e-15 Score=129.19 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred HHHHhc-CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYL-ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~-~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.++..+ .+..+.+|||+|||+|.++..+++.++.+.+|+++|+++.+++.|++++...+. ++++...|+....++
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-- 92 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-- 92 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS--
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc--
Confidence 344433 567788999999999999999998875568999999999999999999887665 389999999864443
Q ss_pred CCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++ +.+++..+++++.+.|||||.++++.|.
T Consensus 93 --~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 93 --DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp --SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 57999985 4678899999999999999999987764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1.2e-14 Score=126.73 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..+++.+++++|++|||||||.|.++..+++.. +++|+++++|++.++.|++++...++.+++.+...|.. ..+
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~ 124 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFD 124 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccc
Confidence 3458899999999999999999999999999886 47999999999999999999999999988999888875 233
Q ss_pred cCCCCccEEEe-----cCCCh---------hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFL-----DLPQP---------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~---------~~~l~~~~~~LkpgG~lv~~ 212 (311)
++||.|++ +++++ ..+++.+.++|||||++++-
T Consensus 125 ---~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 125 ---EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp ---CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ---cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 78999984 44432 46899999999999999863
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=3.3e-15 Score=127.50 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++......++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.|++++...+. ++++.++|+.+..++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~---- 103 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK---- 103 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC----
T ss_pred HHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc----
Confidence 455557778889999999999999999986 46899999999999999999888765 389999999875554
Q ss_pred CCccEEEecC--------CChhhHHHHHHhcccCCcEEEEecCC
Q 021550 180 GLADSIFLDL--------PQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 180 ~~~D~V~~d~--------~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+.||+|++.. ++...+|+++.+.|+|||++++-.++
T Consensus 104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 5799988532 23447899999999999999875443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=2.2e-14 Score=124.61 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...+++.+++.||++|||||||.|.++..+++.. +++|+++++|++.++.|++++...|+.+++++...|... ++
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~--~~- 125 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--FD- 125 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--CC-
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc--cc-
Confidence 3468889999999999999999999999999987 489999999999999999999999998889999999864 33
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.||.|++ ++. ....+++++.++|+|||.+++
T Consensus 126 ---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 126 ---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp ---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred ---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence 67999874 343 235789999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.4e-14 Score=124.88 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=104.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+.+|||+|||+|..++.++... |..+|+++|+|+.+++.|++|+..+++.+ +++.++|... .++. .+||+|+
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~-v~~~~~d~~~-~~~~---~~fDlIv 180 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFS-ALAG---QQFAMIV 180 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCSTTG-GGTT---CCEEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCccc-ceeeeccccc-ccCC---CceeEEE
Confidence 345789999999999999999885 78999999999999999999999999865 9999999873 4554 6899999
Q ss_pred ecCCCh------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 187 LDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 187 ~d~~~~------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
+|+|-- ..++..+.+.|+|||.+++-.. ..|...+.+.+.+ +|.++++
T Consensus 181 sNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig-~~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 181 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-WQQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-SSCHHHHHHHHHHTTCTTCCE
T ss_pred ecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC-chHHHHHHHHHHHCCCCeEEE
Confidence 998721 1367888999999999987443 3556677777776 7988877
Q ss_pred EEeecee
Q 021550 236 FEILLRT 242 (311)
Q Consensus 236 ~e~~~r~ 242 (311)
+.-+...
T Consensus 260 ~kDl~g~ 266 (274)
T d2b3ta1 260 CRDYGDN 266 (274)
T ss_dssp EECTTSS
T ss_pred EECCCCC
Confidence 7655433
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=3.3e-15 Score=125.29 Aligned_cols=122 Identities=19% Similarity=0.289 Sum_probs=96.8
Q ss_pred CCceeeecccHHHHHHhc--CCCCCCEEEEEcccccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHhc---
Q 021550 87 HRTQILYIADISFVIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASAREDFERT--- 156 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~--- 156 (311)
.+..+..|...+.+++.+ +++|+++|||+|||+|+.+..+++.+++. .+|+++|+++++++.|++++...
T Consensus 57 ~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~ 136 (223)
T d1r18a_ 57 GGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 136 (223)
T ss_dssp TTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence 345566788888899988 79999999999999999999999987543 48999999999999999987543
Q ss_pred --CCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 157 --GVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 157 --g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+..+ +.+..+|... .+++. +.||.|++....+ ..-+.+.+.|+|||++++..
T Consensus 137 ~~~~~n-v~~~~~d~~~-~~~~~--~~fD~Iiv~~a~~-~~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 137 MLDSGQ-LLIVEGDGRK-GYPPN--APYNAIHVGAAAP-DTPTELINQLASGGRLIVPV 190 (223)
T ss_dssp HHHHTS-EEEEESCGGG-CCGGG--CSEEEEEECSCBS-SCCHHHHHTEEEEEEEEEEE
T ss_pred hcCccE-EEEEeccccc-ccccc--cceeeEEEEeech-hchHHHHHhcCCCcEEEEEE
Confidence 3344 9999999974 44432 6899999865432 23456788999999998743
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.56 E-value=2.2e-14 Score=122.76 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++++|||+|||+|..+..+++. +.++|+|+|+|+++++.|++++...+...++.+.++|+....+.. .+.||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~--~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc--cccceEE
Confidence 568899999999999999888887 357899999999999999999887777767999999997544432 1689999
Q ss_pred EecCC-----Ch----hhHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 186 FLDLP-----QP----WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 186 ~~d~~-----~~----~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
++... .+ ..++.++.+.|+|||.+++..|..+.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~ 141 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 141 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHH
Confidence 86322 22 2578999999999999998777765543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.4e-15 Score=124.16 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..++... ..+|+++|+|+++++.|++++...+..+ +++.++|+.+..++. ++||+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~~---~~fD~ 130 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEP---DSYDV 130 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCCS---SCEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccccc-ccccccccccccccc---ccccc
Confidence 45677899999999999998887653 4689999999999999999988777655 899999998766655 79999
Q ss_pred EEe-----cCCCh--hhHHHHHHhcccCCcEEEEecCCH--------------HHHHHHHHHHhh-cCceeeE
Q 021550 185 IFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSPCI--------------EQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 185 V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~~~~~~~l~~-~f~~~~~ 235 (311)
|++ +.+++ ..++.++.+.|+|||.+++..+.. -....+.+.+.+ +|..++.
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 985 34444 368999999999999999853211 124455566665 7866553
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=8.5e-15 Score=121.47 Aligned_cols=91 Identities=24% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.|+.+|||+|||+|.++..+ .+++++|+|+.+++.|+++ .+.+.++|+.+.++++ ++||+|
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~---~~fD~I 95 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKD---ESFDFA 95 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCT---TCEEEE
T ss_pred hCCCCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc--------cccccccccccccccc---cccccc
Confidence 356779999999999887654 3468999999999998863 2889999998776766 789999
Q ss_pred Ee-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++ +.+++..+++++.++|+|||.+++..+
T Consensus 96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 96 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccchhhhhhcCCCCceEEEEec
Confidence 85 567888999999999999999988654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.54 E-value=2.8e-14 Score=117.55 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=86.0
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|..+..++++ ..+|+++|+|+.+++.|+++....++++ +.+...|+....+ +
T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~--- 93 (198)
T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTF-D--- 93 (198)
T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCC-C---
T ss_pred HHHHcccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccc-c---
Confidence 344444444559999999999999999987 4799999999999999999999888876 9999999985444 3
Q ss_pred CCccEEEec-----CCC--hhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLD-----LPQ--PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d-----~~~--~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++. .+. ...++.++.+.|+|||++++..
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 789999852 232 2468999999999999988753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=9.9e-15 Score=123.76 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .. .++.+|+.+.++++ ++||+|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l~~~~---~~fD~i 106 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDLPFPS---GAFEAV 106 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSCCSCT---TCEEEE
T ss_pred cCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---cccccccccccccc---ccccce
Confidence 347789999999999999999876 479999999999999999762 22 25678888766766 899998
Q ss_pred Ee------cCCChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 186 FL------DLPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 186 ~~------d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
++ +.+++..+|+++.++|+|||.+++..++..
T Consensus 107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~~ 144 (246)
T d2avna1 107 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 144 (246)
T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred eeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCHH
Confidence 74 357888999999999999999998776543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=6.6e-14 Score=120.02 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.+|||+|||+|.+++.+|+. +.++|+++|+++.+++.+++|++.+++.+++++.++|+.+ ...+ +.||.|
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~-~~~~---~~~D~I 178 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD-FPGE---NIADRI 178 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT-CCCC---SCEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH-hccC---CCCCEE
Confidence 468999999999999999999987 4579999999999999999999999999889999999974 2333 689999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
++++| ....++..+.+.|++||.+.++.
T Consensus 179 i~~~p~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 179 LMGYVVRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence 99765 56778999999999999987653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=3.2e-14 Score=121.10 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=82.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...+.. +++.++|+....++ ++||+|+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~~--v~~~~~d~~~~~~~----~~fD~i~ 106 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNIN----RKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCC--CEEECCCGGGCCCS----CCEEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCcc--ceeeccchhhhccc----ccccccc
Confidence 44579999999999999999987 468999999999999999998877753 89999999864433 6899988
Q ss_pred ec------CC---ChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 187 LD------LP---QPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 187 ~d------~~---~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+- .+ +...+++++.+.|+|||.|++-....
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred eeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 52 22 33458999999999999999744443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=2.2e-14 Score=127.20 Aligned_cols=105 Identities=23% Similarity=0.226 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
+.+|.+|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+..+|+.+++++..+|+.+. .+.. ....||
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~-~~~~fD 219 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK-KGEKFD 219 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-TTCCEE
T ss_pred cCCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh-ccCCCC
Confidence 578999999999999999998876 45799999999999999999999999987799999998641 0110 116899
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+|++|+|.. ..++..+.++|+|||.|++++
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999999843 347888999999999998754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=4.2e-14 Score=122.13 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..+++.. ++..++++|+|+.+++.|+++. .+ +.+.++|+.+.++++ ++||+
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~-----~~-~~~~~~d~~~l~~~~---~sfD~ 150 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQ-VTFCVASSHRLPFSD---TSMDA 150 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TT-SEEEECCTTSCSBCT---TCEEE
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc-----cc-ccceeeehhhccCCC---CCEEE
Confidence 34567899999999999999999885 6789999999999999998752 23 889999998877777 89999
Q ss_pred EEec-CCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 185 IFLD-LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 185 V~~d-~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
|++. .+. .++++.++|||||.+++..|....+.++...+
T Consensus 151 v~~~~~~~---~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~ 190 (268)
T d1p91a_ 151 IIRIYAPC---KAEELARVVKPGGWVITATPGPRHLMELKGLI 190 (268)
T ss_dssp EEEESCCC---CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTT
T ss_pred EeecCCHH---HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHh
Confidence 9853 333 47889999999999999988776666555444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.48 E-value=3.6e-14 Score=116.10 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC-----------CCcEEEEEe
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-----------SSFVTVGVR 167 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~ 167 (311)
.....+.+.||.+|||+|||+|..+..||++ +.+|+++|+|+.+++.|+++....+. ...+++..+
T Consensus 11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 3566678999999999999999999999988 58999999999999999998755432 122567777
Q ss_pred cCCCCCCCCcCCCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 168 DIQGQGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+....... ...||+|+.. ++ ....+++++.+.|||||.+++.
T Consensus 88 d~~~l~~~~--~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 88 DFFALTARD--IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp CCSSSTHHH--HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccccccccc--ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 776422211 1579998742 22 2346889999999999987653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.46 E-value=2.6e-13 Score=115.99 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=92.3
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++...+..+..+|||+|||+|.++..++++. |..+++++|+ +++++.+++++...++.++++++.+|+.+ ..+
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~- 144 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP- 144 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-
Confidence 3457788888888999999999999999999985 7899999998 67899999999999988889999999863 333
Q ss_pred cCCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+||+|++ +.++. ..+|+++.+.|+|||+|++..
T Consensus 145 ---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 145 ---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 56999985 34433 367999999999999999853
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.45 E-value=1.8e-13 Score=114.89 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=81.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
....+.+|||+|||+|.++..+++. ..+|+++|+|+++++.|+++.. +++.+..+|+.+..+ + ++||+
T Consensus 17 ~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-~---~~fD~ 84 (225)
T d2p7ia1 17 PFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-P---RRYDN 84 (225)
T ss_dssp GGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-S---SCEEE
T ss_pred hhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-c---ccccc
Confidence 3345779999999999999988876 3689999999999999987632 348999999875433 3 68999
Q ss_pred EEe-----cCCChhhHHHHHH-hcccCCcEEEEecCC
Q 021550 185 IFL-----DLPQPWLAIPSAK-KMLKQDGILCSFSPC 215 (311)
Q Consensus 185 V~~-----d~~~~~~~l~~~~-~~LkpgG~lv~~~~~ 215 (311)
|++ +.+++..++.++. ++|+|||.+++..|.
T Consensus 85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 985 5678889999998 789999999987664
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.6e-14 Score=119.05 Aligned_cols=100 Identities=23% Similarity=0.212 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D 183 (311)
..+|.+|||||||+|..+..+++. ...+|+++|+|+.+++.|++++...+ ..+.+...|+.. ..++. ++||
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~fD 123 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD---GHFD 123 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT---TCEE
T ss_pred ccCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccccc---cccc
Confidence 367899999999999999999876 24689999999999999999977654 337777776643 33555 7899
Q ss_pred EEEecCC----------ChhhHHHHHHhcccCCcEEEEe
Q 021550 184 SIFLDLP----------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~----------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.|++|.. ++..++.++.++|||||.|+++
T Consensus 124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9987653 3346889999999999999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.8e-13 Score=114.16 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=98.6
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.|....++..++.....++|||+|||+|+.++++++.+.++++|+++|.+++..+.|++++...|+.++++++.+|+.
T Consensus 42 ~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~ 121 (219)
T d2avda1 42 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 121 (219)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence 35565555555666667789999999999999999999987789999999999999999999999999999999999975
Q ss_pred CC---CCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 171 GQ---GFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 171 ~~---~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+. .+.....+.||+||+|.. .....++.+.+.|+|||.+++
T Consensus 122 e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 122 ETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp HHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred hcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 41 011111268999999864 344678999999999999997
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.44 E-value=2.3e-13 Score=116.41 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=86.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..++... ...|+++|+++.+++.|++++.. . +++++.++|+.+..++.
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~--~-~~~~~~~~d~~~~~~~~-- 156 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG--M-PVGKFILASMETATLPP-- 156 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT--S-SEEEEEESCGGGCCCCS--
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhccccc--c-ccceeEEccccccccCC--
Confidence 46677777788899999999999999988764 36899999999999999987643 2 34899999998766665
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++ +++++ ..+|.++.+.|+|||.|++.
T Consensus 157 -~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 157 -NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 78999985 34444 36799999999999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=2.7e-13 Score=119.63 Aligned_cols=104 Identities=24% Similarity=0.178 Sum_probs=84.5
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCc
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~ 182 (311)
...+|++|||++||+|.++++++.. +.+|+++|+|+.+++.|++|+..+|+.+ ++++.+|+.+. .+.. ..+.|
T Consensus 142 ~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~-~~~~f 216 (318)
T d1wxxa2 142 ERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEK-EGERF 216 (318)
T ss_dssp GGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHH-TTCCE
T ss_pred HHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHh-hhcCC
Confidence 3457899999999999999988764 5799999999999999999999999976 99999998641 0111 11689
Q ss_pred cEEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 183 DSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 183 D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+|++|+|.. ..++..+.++|+|||.|++.+
T Consensus 217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999842 246788899999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=114.87 Aligned_cols=132 Identities=13% Similarity=-0.052 Sum_probs=93.1
Q ss_pred CCHHHHhhhhcCC-ce----eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 021550 76 PTPELWTLVLSHR-TQ----ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150 (311)
Q Consensus 76 p~~~~~~~~~~~~-~~----~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 150 (311)
.+.+.|...+..+ +. -..|.....+.+.+.+.++.+|||+|||+|..+..|++. +.+|+++|+|+.+++.|+
T Consensus 8 ~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~ 84 (229)
T d2bzga1 8 LTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFF 84 (229)
T ss_dssp CCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHH
Confidence 3556666554322 11 122333345557778889999999999999999999987 579999999999999998
Q ss_pred HHHHhcC----------------CCCcEEEEEecCCCCCCCCcCCCCccEEEec-----C--CChhhHHHHHHhcccCCc
Q 021550 151 EDFERTG----------------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----L--PQPWLAIPSAKKMLKQDG 207 (311)
Q Consensus 151 ~~~~~~g----------------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG 207 (311)
++..... ....+++.++|+....... .+.||+|+.. . .....++..+.++|+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~--~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG 162 (229)
T d2bzga1 85 TEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTN--IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162 (229)
T ss_dssp HHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEE
T ss_pred HHhhccccccchhcccccceeeecCCcEEEEEcchhhccccc--cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcc
Confidence 8754321 1234888999987532221 2689998732 1 234568899999999999
Q ss_pred EEEEe
Q 021550 208 ILCSF 212 (311)
Q Consensus 208 ~lv~~ 212 (311)
.+++.
T Consensus 163 ~~~l~ 167 (229)
T d2bzga1 163 QYLLC 167 (229)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.41 E-value=1.2e-13 Score=108.91 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=81.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V 185 (311)
-.|.+|||+|||+|.+++.++.+ +..+|+++|.++.+++.+++|+...++.++++++++|+... .... .+||+|
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~---~~fDiI 87 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLV 87 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc---ccccee
Confidence 36899999999999999988776 45799999999999999999999999988899999998641 1222 689999
Q ss_pred EecCCChh----hHHHHH--HhcccCCcEEEE
Q 021550 186 FLDLPQPW----LAIPSA--KKMLKQDGILCS 211 (311)
Q Consensus 186 ~~d~~~~~----~~l~~~--~~~LkpgG~lv~ 211 (311)
|+|+|-.. ..+..+ .++|+|+|.+++
T Consensus 88 f~DPPy~~~~~~~~l~~i~~~~~L~~~g~iii 119 (152)
T d2esra1 88 FLDPPYAKETIVATIEALAAKNLLSEQVMVVC 119 (152)
T ss_dssp EECCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EechhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence 99998433 344444 356899999986
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=1.6e-12 Score=105.97 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=101.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.|-.+..++.++++.++..+||++||+|+.+..+++.+ |.++|+++|.++++++.|++++...+ +++.+.++++.+.
T Consensus 8 ~pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 8 IPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREA 84 (192)
T ss_dssp CCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGH
T ss_pred CchHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhH
Confidence 34555568899999999999999999999999999997 68999999999999999999987654 4599999987641
Q ss_pred -----CCCCcCCCCccEEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 173 -----GFPDEFSGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 173 -----~~~~~~~~~~D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
.+.. ++||.|++|.+.. ...|..+.++|+|||.+++.+.....-..+...++
T Consensus 85 ~~~~~~~~~---~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~ 155 (192)
T d1m6ya2 85 DFLLKTLGI---EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR 155 (192)
T ss_dssp HHHHHHTTC---SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence 2222 6899999987631 25788999999999999987766544333333343
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.39 E-value=2.6e-13 Score=113.71 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=95.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|....++..++......+|||+|+++|+.++.+++.+.++++++++|.+++..+.|++++++.|+.++++++.+|+.+ .
T Consensus 45 ~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~-~ 123 (227)
T d1susa1 45 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP-V 123 (227)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH-H
T ss_pred HHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH-H
Confidence 333334444555566789999999999999999999977899999999999999999999999999999999999864 2
Q ss_pred CCCc-----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 174 FPDE-----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ~~~~-----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++.. ..+.||+||+|.. .....++.+.+.|+|||.+++
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred HHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEE
Confidence 2110 1267999999865 445788999999999999997
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.39 E-value=1.9e-12 Score=110.72 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++...+..+..+|||||||+|.++..++++. |..+++++|+ +++++.|++++...+..+++.+..+|+. ..++
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~-~~~p- 145 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF-KPLP- 145 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCS-
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecc-cccc-
Confidence 3457777788888999999999999999999996 7899999997 8899999999999999888999999987 3444
Q ss_pred cCCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++|+|++ +.++. ..+|+++.+.|+|||++++...
T Consensus 146 ---~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 146 ---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ---ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 46999875 34433 3579999999999999998654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=8e-13 Score=117.23 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=85.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
|.......+|++|||+|||+|.+++.++++ ++.+|+++|.++ +++.|+++...++..+++.++.+|+.+..++.
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~--- 103 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF--- 103 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS---
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc---
Confidence 444445568999999999999999988876 467999999986 67889999999998888999999998766666
Q ss_pred CCccEEEecCC--------ChhhHHHHHHhcccCCcEEE
Q 021550 180 GLADSIFLDLP--------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~~--------~~~~~l~~~~~~LkpgG~lv 210 (311)
.+||+|++.+. ....++....++|||||.++
T Consensus 104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 78999986432 33456777789999999884
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=5.8e-13 Score=118.08 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=92.1
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-CCcEEE
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-SSFVTV 164 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~-~~~v~~ 164 (311)
.+..+..++..+++.++++|||+|||+|.++..+|... +..+++|+|+++.+++.|+++.... |. ...+++
T Consensus 136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~ 214 (328)
T d1nw3a_ 136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214 (328)
T ss_dssp CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 34445678899999999999999999999999999885 4678999999999999998876542 22 234999
Q ss_pred EEecCCCCCCCCcCCCCccEEEecC----CChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDL----PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~----~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++|+.+..+.+.. ..+|+|+++. ++....|.++.+.|||||++++..+
T Consensus 215 ~~gd~~~~~~~~~~-~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 215 ERGDFLSEEWRERI-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp EECCTTSHHHHHHH-HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EECccccccccccc-CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 99999764443310 1257777642 3455789999999999999997543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=2.9e-13 Score=112.71 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=93.4
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+.|.....+..++......+|||+|||+|..++.+++.+.++++|+++|+++++.+.|++++...|+.++++++.+|+.+
T Consensus 40 i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e 119 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 119 (214)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence 34544444555555566689999999999999999998877899999999999999999999999998889999999864
Q ss_pred CCCCCc----CCCCccEEEecCCCh----hhHHHHHHhcccCCcEEEE
Q 021550 172 QGFPDE----FSGLADSIFLDLPQP----WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 172 ~~~~~~----~~~~~D~V~~d~~~~----~~~l~~~~~~LkpgG~lv~ 211 (311)
.++.. ..+.||+||+|.... ...+.++.+.|+|||.+++
T Consensus 120 -~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 120 -LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp -HGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -cccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 12110 115799999985422 2246677889999999875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=1e-12 Score=115.97 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.+|++|||+|||+|.+++.++++ ++.+|+++|.++. ...+++++..+++.+++.++.+|+.+..++. ++||
T Consensus 29 ~~~~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~---~~~D 102 (316)
T d1oria_ 29 RHLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPV---EKVD 102 (316)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSS---SCEE
T ss_pred cccCCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccccc---ceeE
Confidence 34558999999999999999988886 4578999999975 5777788888898888999999998766665 7899
Q ss_pred EEEecCC--------ChhhHHHHHHhcccCCcEEE
Q 021550 184 SIFLDLP--------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 184 ~V~~d~~--------~~~~~l~~~~~~LkpgG~lv 210 (311)
+|++... ....++..+.++|+|||.++
T Consensus 103 ~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 103 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 9986433 23467788899999999886
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.7e-12 Score=112.96 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
|.......++++|||+|||+|.+++.+|++ ++.+|+++|.++.+. .+++....++..+++.++.+|+.+..++.
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~--- 100 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPV--- 100 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSC---
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCcc---
Confidence 445556778999999999999999988886 457999999999875 45666677777778999999998766665
Q ss_pred CCccEEEecCCC--------hhhHHHHHHhcccCCcEEE
Q 021550 180 GLADSIFLDLPQ--------PWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~~~--------~~~~l~~~~~~LkpgG~lv 210 (311)
.+||+|+++... ...++....++|+|||.++
T Consensus 101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 789999975431 2244555678999999886
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.34 E-value=2e-12 Score=113.71 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCC--CcCCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFP--DEFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~--~~~~~~ 181 (311)
.+.+|.+|||++||+|.++++++.. +...|+++|+++.+++.|++|+..+++. .+++++.+|+.+ .+. ......
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~-~l~~~~~~~~~ 217 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD-YFKYARRHHLT 217 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH-HHHHHHHTTCC
T ss_pred HhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH-HHHHHHhhcCC
Confidence 4568999999999999999887764 5678999999999999999999999985 469999999863 111 001157
Q ss_pred ccEEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 182 ADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 182 ~D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
||+||+|+|.. ..++..+.++|+|||.|++.+
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999999832 247788999999999998653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.4e-12 Score=117.73 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=86.6
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-------CC-CcEE
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VS-SFVT 163 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-------~~-~~v~ 163 (311)
+.+..+..+++.+++.||++|||+|||+|.++..+|... +.++++|+|+++.+++.|+++....+ .. ..+.
T Consensus 200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~ 278 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence 345567779999999999999999999999999999987 35799999999999999999876532 11 1123
Q ss_pred E-EEecCCCCCCCCcCCCCccEEEec----CCChhhHHHHHHhcccCCcEEEEe
Q 021550 164 V-GVRDIQGQGFPDEFSGLADSIFLD----LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 164 ~-~~~D~~~~~~~~~~~~~~D~V~~d----~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+ ..++.............+|+|+++ .++....|.++.+.|||||+|++.
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 2 223333211111011357888764 234457899999999999999874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.7e-11 Score=104.11 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=102.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---CCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF---PDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~---~~~~~~~~D~ 184 (311)
+..++||+|||+|..++.++... ++.+++++|+++++++.|++|++.+++.+++.+.+.+.....+ .....+.||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 44689999999999999999887 6799999999999999999999999999989998876543211 1111267999
Q ss_pred EEecCCCh----------------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 185 IFLDLPQP----------------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 185 V~~d~~~~----------------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
|++|+|-. ...+.+....++..|.+.+.....+++.++..
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~ 219 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKE 219 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHH
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHH
Confidence 99998811 01345566778888988766666677888888
Q ss_pred HHhh-cCceeeEEEee
Q 021550 225 SLRL-NFTDIRTFEIL 239 (311)
Q Consensus 225 ~l~~-~f~~~~~~e~~ 239 (311)
.|++ ++.++++.|..
T Consensus 220 ~L~~~g~~~i~~ie~~ 235 (250)
T d2h00a1 220 ELRIQGVPKVTYTEFC 235 (250)
T ss_dssp HHHHTTCSEEEEEEEE
T ss_pred HHHHcCCCeEEEEEec
Confidence 8877 78888877764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.33 E-value=3.1e-12 Score=103.63 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--cCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~~~~~D 183 (311)
...|.+|||++||+|.+++.++.+ ++.+|+.+|.++++++.+++|+...+..+++++...|+.. .+.. .....||
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~-~l~~~~~~~~~fD 115 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR-ALEQFYEEKLQFD 115 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH-HHHHHHHTTCCEE
T ss_pred hcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh-hhhhhcccCCCcc
Confidence 357899999999999999998887 5679999999999999999999998888779999999864 1110 0115799
Q ss_pred EEEecCCCh----hhHHHHHH--hcccCCcEEEEe
Q 021550 184 SIFLDLPQP----WLAIPSAK--KMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~~~----~~~l~~~~--~~LkpgG~lv~~ 212 (311)
+||+|+|-. ...+..+. .+|+++|.+++-
T Consensus 116 lIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 116 LVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp EEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred eEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 999999832 34566664 469999988863
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=5.3e-13 Score=107.24 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCcc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D 183 (311)
+..|.+|||+|||+|.+++.++.+ +++++++|.++.+++.+++|++..++.+++.....|... ..... .+||
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~---~~fD 112 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQG---ERFT 112 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTT---CCEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccC---Cccc
Confidence 467889999999999999987776 468999999999999999999999987655554444321 11222 6799
Q ss_pred EEEecCC---ChhhHHHHHH--hcccCCcEEEEe
Q 021550 184 SIFLDLP---QPWLAIPSAK--KMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~---~~~~~l~~~~--~~LkpgG~lv~~ 212 (311)
+||+|+| +..+.+..+. .+|+|||.+++-
T Consensus 113 ~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred eeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence 9999998 2233444443 479999998863
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.5e-12 Score=113.59 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=83.3
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC---cEEEEEecCCC--C
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS---FVTVGVRDIQG--Q 172 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~---~v~~~~~D~~~--~ 172 (311)
..+...+...++.+|||+|||+|.++..|++. +.+|+++|+|++|++.|+++....+... ...+...|+.. .
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 122 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence 34666677777889999999999999999987 4699999999999999999887665431 13344455432 1
Q ss_pred CCCCcCCCCccEEEe------cCCC-------hhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 173 GFPDEFSGLADSIFL------DLPQ-------PWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~------d~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
.++. .+.||.|++ ++++ ...+|+++.++|||||.|++-..+.+
T Consensus 123 ~~~~--~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 178 (292)
T d1xvaa_ 123 DVPA--GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 178 (292)
T ss_dssp HSCC--TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred ccCC--CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHH
Confidence 1221 167999875 2232 23589999999999999997555443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.8e-11 Score=106.48 Aligned_cols=129 Identities=23% Similarity=0.289 Sum_probs=98.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
....+..+++.+|++|||+++|+|+-+.+++..+++.++|+++|+++..++.+++++.+.|+.+ +.+...|........
T Consensus 83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~ 161 (293)
T d2b9ea1 83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSD 161 (293)
T ss_dssp GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTC
T ss_pred ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccc
Confidence 3356778899999999999999999999999999888999999999999999999999999987 899998886522221
Q ss_pred cCCCCccEEEecCCCh-----------------------------hhHHHHHHhcccCCcEEEEecCCH---HHHHHHHH
Q 021550 177 EFSGLADSIFLDLPQP-----------------------------WLAIPSAKKMLKQDGILCSFSPCI---EQVQRSCE 224 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~-----------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~ 224 (311)
...+.||.|++|+|+. ...+..+. .|+|||.|| |+.|. ++.+..++
T Consensus 162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lv-YsTCSl~~~ENe~vV~ 239 (293)
T d2b9ea1 162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLV-YSTCSLCQEENEDVVR 239 (293)
T ss_dssp GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEE-EEESCCCGGGTHHHHH
T ss_pred cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEE-EeeccCChhHhHHHHH
Confidence 1125799999998832 02344455 478999876 76654 44444444
Q ss_pred HHhh
Q 021550 225 SLRL 228 (311)
Q Consensus 225 ~l~~ 228 (311)
.+-+
T Consensus 240 ~~L~ 243 (293)
T d2b9ea1 240 DALQ 243 (293)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=8e-12 Score=109.65 Aligned_cols=123 Identities=27% Similarity=0.366 Sum_probs=99.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+....+++.+|++|||+++|+|+-+.+++..+...+.+++.|.++..+...++++.+.++.+ +.+...|........
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~-- 183 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELN-- 183 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGC--
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccccccccc--
Confidence 46677899999999999999999999999999888999999999999999999999999977 767767765432222
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---HHHHHHHHHH
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---EQVQRSCESL 226 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l 226 (311)
..||.|++|+|+. .++|.++.+.|||||++| |+.|. ++-+..++.+
T Consensus 184 -~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV-YsTCSl~~eENE~VV~~~ 259 (313)
T d1ixka_ 184 -VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV-YSTCSLEPEENEFVIQWA 259 (313)
T ss_dssp -CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EEESCCCGGGTHHHHHHH
T ss_pred -ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE-EeeccCChHhHHHHHHHH
Confidence 6899999998843 257889999999999987 76654 3334444444
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.2e-12 Score=108.32 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=78.5
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhC---C--CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE--ecCCC------
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVA---P--TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV--RDIQG------ 171 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~---~--~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~D~~~------ 171 (311)
+.++..+|||+|||+|.++..++..+. + ...++++|+|+.+++.|++++........+.+.. .++..
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 445556899999999999988876541 1 2468999999999999999886543323354433 22211
Q ss_pred CCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 172 QGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+. ++||+|++ +.+++..+++++.++|+|||.+++..+
T Consensus 117 ~~~~~---~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 117 EKKEL---QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp TSSSC---CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCC---CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 22333 78999985 567889999999999999999887643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.9e-11 Score=104.64 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=95.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~ 177 (311)
..+..+++.+|.+|||+++|+|+-+.+++... ..++|+++|+++..++..++++++.|+.+ +.....|..... ...
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~- 169 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGE- 169 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTT-
T ss_pred ccccccCccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhccc-
Confidence 36678899999999999999999999999875 56899999999999999999999999876 555544443211 122
Q ss_pred CCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---HHHHHHHHHHh
Q 021550 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---EQVQRSCESLR 227 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~ 227 (311)
+.||.|++|+|+. ..+|.++.+.|+|||+|| |+.|. ++-+..++.+-
T Consensus 170 --~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv-YsTCS~~~~ENE~vv~~~l 246 (284)
T d1sqga2 170 --QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV-YATCSVLPEENSLQIKAFL 246 (284)
T ss_dssp --CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE-EEESCCCGGGTHHHHHHHH
T ss_pred --ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE-EeeecCchhhCHHHHHHHH
Confidence 6799999999843 257889999999999988 76654 33444444433
Q ss_pred h
Q 021550 228 L 228 (311)
Q Consensus 228 ~ 228 (311)
+
T Consensus 247 ~ 247 (284)
T d1sqga2 247 Q 247 (284)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.25 E-value=1.6e-11 Score=106.83 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCCCC--cCCCCc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPD--EFSGLA 182 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~~~--~~~~~~ 182 (311)
...+.+|||++||+|.++++++.. +++|+++|.|+.+++.|++|+..+++.+ .++++.+|+.+ .+.. .....|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~-~l~~~~~~~~~f 205 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK-FIQREERRGSTY 205 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH-HHHHHHHHTCCB
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH-hHHHHhhcCCCC
Confidence 456889999999999999988865 4689999999999999999999998864 58999999864 1110 011579
Q ss_pred cEEEecCCCh---------------hhHHHHHHhcccCCcEEEEe
Q 021550 183 DSIFLDLPQP---------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 183 D~V~~d~~~~---------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+||+|+|.. ...+..+..+|+|||.+++.
T Consensus 206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999832 13456778899999875543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=9.3e-11 Score=96.27 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=79.1
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
...+--.|.+|||+|||+|.+++.++.+ +..+|+++|+++.+++.|++|+...+.. .++...|+.. +. ++
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~--~~----~~ 109 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSE--FN----SR 109 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGG--CC----CC
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhh--hC----Cc
Confidence 3344456899999999999999887765 4579999999999999999999887753 7888888864 33 67
Q ss_pred ccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 182 ADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 182 ~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
||+||+|+|-.. .....+...+.+++.++.............+.+
T Consensus 110 fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~~~v~~ih~~~~~~~~~i~~~ 158 (201)
T d1wy7a1 110 VDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKF 158 (201)
T ss_dssp CSEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEEEEECCHHHHHHHHHH
T ss_pred CcEEEEcCccccccccccHHHHHHHHhhcccchhcccchHHHHHHHHHH
Confidence 999999998321 111222233444555544433334444444444
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.6e-11 Score=104.50 Aligned_cols=124 Identities=14% Similarity=0.027 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc------------------------
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF------------------------ 161 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~------------------------ 161 (311)
..+|.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 456889999999999988766654 245799999999999999999876543210
Q ss_pred -----EEEEEecCCC----CCCCCcCCCCccEEEec-----CC----ChhhHHHHHHhcccCCcEEEEecCCH-------
Q 021550 162 -----VTVGVRDIQG----QGFPDEFSGLADSIFLD-----LP----QPWLAIPSAKKMLKQDGILCSFSPCI------- 216 (311)
Q Consensus 162 -----v~~~~~D~~~----~~~~~~~~~~~D~V~~d-----~~----~~~~~l~~~~~~LkpgG~lv~~~~~~------- 216 (311)
......+... ..++. +.||+|++. .+ +...+++++.+.|||||.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~---~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~ 203 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVL---PLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG 203 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCC---CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred HhhhhhcccccccccccccccccC---CcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec
Confidence 1122222221 22333 789999752 22 34468999999999999998753211
Q ss_pred --------HHHHHHHHHHhh-cCceee
Q 021550 217 --------EQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 217 --------~~~~~~~~~l~~-~f~~~~ 234 (311)
-....+.+.|.+ ||..++
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 204 KREFSCVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccccccCCCHHHHHHHHHHCCCEEEE
Confidence 124566666766 776443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.2e-11 Score=100.15 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+.+|||++||+|.+++.++.+ +..+|+.+|.++.+++.+++|+...+..+ +.++..|+... +. .....||+||+
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~-l~-~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSF-LA-QKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHH-HS-SCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccc-eeeeeeccccc-cc-ccccccCEEEE
Confidence 5789999999999999998887 46799999999999999999999888766 88999988641 11 11268999999
Q ss_pred cCCChh----hHHHHHH--hcccCCcEEEEe
Q 021550 188 DLPQPW----LAIPSAK--KMLKQDGILCSF 212 (311)
Q Consensus 188 d~~~~~----~~l~~~~--~~LkpgG~lv~~ 212 (311)
|+|-.. ..+..+. .+|+++|.+++-
T Consensus 118 DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 118 DPPFRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp CCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 998332 3445443 358999988863
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=7.4e-11 Score=105.49 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=106.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-- 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-- 176 (311)
.++++++..++++|||+.||+|.+++.|++. ..+|+++|.++++++.|++|+..+++.+ +.+..+|+.+ .+..
T Consensus 203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~-~~~~~~ 277 (358)
T d1uwva2 203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEE-DVTKQP 277 (358)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTS-CCSSSG
T ss_pred HHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhh-hhhhhh
Confidence 4677888889999999999999999999886 5899999999999999999999999987 9999999874 2221
Q ss_pred cCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceeeEEee
Q 021550 177 EFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~~v~~ 247 (311)
.....+|+|++|+|-. ...+..+.+ ++|.-++++.+.......++...+..+ ...+..++.+...+|++.
T Consensus 278 ~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~ 351 (358)
T d1uwva2 278 WAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 351 (358)
T ss_dssp GGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEE
T ss_pred hhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeEEEEEecCCCCccEEE
Confidence 1125699999999833 245566555 366666665554444444444444554 466677777777777664
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=2.4e-11 Score=104.00 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=86.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
+..+|+|+|||+|..+..+++. ++.+|+++|+|+++++.|++|++.+++.+++.+...|... .++. ..+.||+|++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~-~~~~-~~~~fDlIVs 185 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFKE-KFASIEMILS 185 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGGG-GTTTCCEEEE
T ss_pred cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc-cccc-ccCcccEEEE
Confidence 4568999999999999998865 6899999999999999999999999998889999988864 3322 1168999999
Q ss_pred cCC--------------Chh----------hHHH-HHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 188 DLP--------------QPW----------LAIP-SAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 188 d~~--------------~~~----------~~l~-~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
|+| +|. .++. -+.++|+|||.+++-.. ..|...+.+.+.
T Consensus 186 NPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig-~~Q~~~v~~l~~ 249 (271)
T d1nv8a_ 186 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG-EDQVEELKKIVS 249 (271)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC-TTCHHHHTTTST
T ss_pred cccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC-HHHHHHHHHHHH
Confidence 988 121 1222 24678999999886443 355555544443
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.5e-11 Score=102.42 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=72.2
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-------------------------
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS------------------------- 159 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~------------------------- 159 (311)
+...|.+|||+|||+|.+++..+... ..+|+++|+++.+++.+++++......
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 44568899999999998776555442 468999999999999999877543211
Q ss_pred ----CcEEEEEecCCCCC-CC--CcCCCCccEEEec-----C-C---ChhhHHHHHHhcccCCcEEEEe
Q 021550 160 ----SFVTVGVRDIQGQG-FP--DEFSGLADSIFLD-----L-P---QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 160 ----~~v~~~~~D~~~~~-~~--~~~~~~~D~V~~d-----~-~---~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
....+...|+.... +. ....++||+|++. + + +...+++++.++|||||.|++.
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01234445665321 11 1112579999752 1 2 3456899999999999999873
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.12 E-value=8e-11 Score=95.95 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+--.|++|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+. + +++..+|+.. ++ +.||+
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~-~~~~~~D~~~--l~----~~fD~ 110 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----G-VNFMVADVSE--IS----GKYDT 110 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----T-SEEEECCGGG--CC----CCEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----c-ccEEEEehhh--cC----CcceE
Confidence 3346899999999999999877765 45789999999999999998842 3 7899999864 33 68999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
||+|+|
T Consensus 111 Vi~NPP 116 (197)
T d1ne2a_ 111 WIMNPP 116 (197)
T ss_dssp EEECCC
T ss_pred EEeCcc
Confidence 999988
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.11 E-value=1.4e-10 Score=93.80 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=77.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCC-CCCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQG-QGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~-~~~~~~~~~~~D~V 185 (311)
.+.+|||+.||||.+++.++.+ ++.+|+.+|.+...++..++|++..+..+ ...+...|+.. ..... ....||+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~-~~~~fDlI 119 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ-NQPHFDVV 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-SSCCEEEE
T ss_pred ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc-cCCcccEE
Confidence 6789999999999999999988 57899999999999999999999888754 46666666543 11111 11579999
Q ss_pred EecCCChh----hHHHHHH--hcccCCcEEEEe
Q 021550 186 FLDLPQPW----LAIPSAK--KMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~----~~l~~~~--~~LkpgG~lv~~ 212 (311)
|+|+|-.. ..+..+. .+|+++|.+++-
T Consensus 120 FlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 120 FLDPPFHFNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp EECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 99999533 3455553 468999988863
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=2.9e-10 Score=98.26 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=99.3
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..++.. ..+||.+|.|.|..+..+++.. +..+|+.+|++++.++.|++.+.... -+++++++.+|+.. .+. ..
T Consensus 84 l~~~~~-pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~-~l~-~~ 159 (295)
T d1inla_ 84 MFLHPN-PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE-YVR-KF 159 (295)
T ss_dssp HHHSSS-CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-HGG-GC
T ss_pred HhhCCC-CceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH-HHh-cC
Confidence 334444 4799999999999998888763 46799999999999999999765431 14579999999874 222 12
Q ss_pred CCCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEeec
Q 021550 179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEILL 240 (311)
Q Consensus 179 ~~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~~ 240 (311)
.+.||+|++|.+++ .++++.+.+.|+|||.+++.+.+ .+.+..+.+.+++-|.....+-...
T Consensus 160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~v 235 (295)
T d1inla_ 160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFM 235 (295)
T ss_dssp SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEEC
T ss_pred CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeee
Confidence 26899999987654 36899999999999999987654 2445666666666688777665543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.00 E-value=1.3e-09 Score=96.04 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=96.2
Q ss_pred eeecccHHH-HH----HhcCCCCCCEEEEEcccccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 91 ILYIADISF-VI----MYLELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 91 ~~~~~~~~~-i~----~~~~~~~g~~VLdiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
.+.|..+.. |+ .++...++.+|||.+||+|.+...+..++. ....++|+|+++.+++.|+.++...+..
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-- 172 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-- 172 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--
Confidence 345665442 22 344677888999999999999998887653 2347999999999999999998877754
Q ss_pred EEEEEecCCCCCCCCcCCCCccEEEecCCCh-----------------------hhHHHHHHhcccCCcEEEEecCCH--
Q 021550 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCI-- 216 (311)
Q Consensus 162 v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~-----------------------~~~l~~~~~~LkpgG~lv~~~~~~-- 216 (311)
..+...|... ..+. .+||+|+.++|-. ..++..+.+.|+|||+++++.|..
T Consensus 173 ~~~~~~d~~~-~~~~---~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l 248 (328)
T d2f8la1 173 MTLLHQDGLA-NLLV---DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF 248 (328)
T ss_dssp CEEEESCTTS-CCCC---CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred hhhhcccccc-cccc---ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccc
Confidence 5667777653 2333 6899999999821 136899999999999998877743
Q ss_pred --HHHHHHHHHHhhc
Q 021550 217 --EQVQRSCESLRLN 229 (311)
Q Consensus 217 --~~~~~~~~~l~~~ 229 (311)
.....+.+.|.+.
T Consensus 249 ~~~~~~~lR~~L~~~ 263 (328)
T d2f8la1 249 GTSDFAKVDKFIKKN 263 (328)
T ss_dssp GSTTHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHhC
Confidence 2334445555443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.00 E-value=4e-10 Score=96.85 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCcEEEEEecCCCCCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------g~~~~v~~~~~D~~~~~~~~~ 177 (311)
....+||.+|.|.|..+..+++. +..+|+.+|++++.++.|++.+... ..+.+++++.+|+.. .+..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~-~l~~- 146 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE-FIKN- 146 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH-HHHH-
T ss_pred CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH-HHhc-
Confidence 44589999999999999888765 4579999999999999999876432 234579999999874 1222
Q ss_pred CCCCccEEEecCCCh---------hhHHHHHHhcccCCcEEEEec--CC--HHHHHHHHHHHhhcCceeeEEEe
Q 021550 178 FSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~--~~--~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
.++||+|++|.+++ .++++.+.+.|+|+|.+++.+ |. .+.+..+...+++-|..+..+..
T Consensus 147 -~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~ 219 (276)
T d1mjfa_ 147 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSF 219 (276)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred -cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEe
Confidence 16799999987754 368999999999999998753 22 24556666667667887777654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=5.8e-10 Score=97.39 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=95.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--C--CCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--G--VSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g--~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
...++||.+|.|.|..+..+++. .+..+|+.+|++++.++.|++.+... + -+++++++.+|+.. .+.. ...+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~-~l~~-~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-YLER-TEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-HHHH-CCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH-Hhhh-cCCcc
Confidence 34579999999999999888876 35679999999999999999987542 1 24569999999974 1111 12679
Q ss_pred cEEEecCCCh------------hhHHHHHHhcccCCcEEEEecCC----HHHH-HHHHHHHhhcCceeeEEEee
Q 021550 183 DSIFLDLPQP------------WLAIPSAKKMLKQDGILCSFSPC----IEQV-QRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 183 D~V~~d~~~~------------~~~l~~~~~~LkpgG~lv~~~~~----~~~~-~~~~~~l~~~f~~~~~~e~~ 239 (311)
|+||+|.+++ .++++.+.+.|+|||.+++.+.+ ..++ ..+.+.+++.|..+..+...
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~ 226 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNH 226 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEee
Confidence 9999987543 35789999999999999875432 1223 34446666678888777653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.97 E-value=1.5e-09 Score=93.74 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=94.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...+||.+|.|.|..+..+++.. +..+++.+|++++.++.+++.+... .-+.+++++.+|+.. .+.....+.||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~-~l~~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA-FLKNAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH-HHHTSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH-HHhhccccCccE
Confidence 34799999999999999888763 4578999999999999999976432 124569999999874 121111158999
Q ss_pred EEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceee
Q 021550 185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 185 V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~ 234 (311)
|++|..++ .++++.+.+.|+|||.+++.+++ .+.+..+.+.+++-|....
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~ 220 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSV 220 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCE
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccce
Confidence 99998875 36899999999999999987654 3556666677776565543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=2.2e-09 Score=91.92 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-C--CCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G--VSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g--~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
....+||.+|.|.|..+..+++.. +..+|+.+|++++.++.|++.+... + -+.+++++.+|+.. .+.. ...+||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~-~l~~-~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM-HIAK-SENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH-HHHT-CCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH-HHhh-cCCCCC
Confidence 345799999999999999988763 4679999999999999999987432 1 24569999999874 1111 126899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEee
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+|++|.+++ .++++.+.+.|+|+|.+++.+.+ .+.+..+...+++-|..+..+...
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~ 219 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTAN 219 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEE
Confidence 999998764 36899999999999999986543 244566667777678887776654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.95 E-value=1.7e-09 Score=90.63 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=76.9
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+..+++.+++.++++|||||||+|.+|..+++. ..+|+++|+++.+++.+++++.. .. +++++++|+.+..+
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~--~~-n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HD-NFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CC-SEEEECCCGGGCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc--cc-chhhhhhhhhhccc
Confidence 34556889999999999999999999999999987 47999999999999999987643 23 49999999987666
Q ss_pred CCcCCCCccEEEecCCChh--hHHHHHH
Q 021550 175 PDEFSGLADSIFLDLPQPW--LAIPSAK 200 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~--~~l~~~~ 200 (311)
+. .....|+.+.|-.. .++..+.
T Consensus 82 ~~---~~~~~vv~NLPYnIss~il~~ll 106 (235)
T d1qama_ 82 PK---NQSYKIFGNIPYNISTDIIRKIV 106 (235)
T ss_dssp CS---SCCCEEEEECCGGGHHHHHHHHH
T ss_pred cc---cccceeeeeehhhhhHHHHHHHH
Confidence 65 44456788988543 3444443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.94 E-value=1.1e-09 Score=95.06 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...+||.+|.|.|..+..+++.- +..+|+.+|++++.++.|++.+.... -+.+++++.+|+.. .+. .....||+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~-~l~-~~~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-FLK-NHKNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-HHH-HCTTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-HHH-hCCCCCCE
Confidence 45799999999999999988762 45799999999999999999875422 13569999999874 121 11268999
Q ss_pred EEecCCChh---------hHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhhcCceeeEEEeec
Q 021550 185 IFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRLNFTDIRTFEILL 240 (311)
Q Consensus 185 V~~d~~~~~---------~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~~f~~~~~~e~~~ 240 (311)
|++|.+++. ++++.+.+.|+|||.+++.+.+. +.+..+.+.+++.|..+..+....
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~v 251 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIV 251 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeecc
Confidence 999987653 57899999999999999875543 445566666666688777666543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.7e-09 Score=93.14 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=95.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
...++||.+|.|.|..+..+++.. +..+|+.+|++++.++.|++.+... --+.+++++.+|+.. .+.. ..++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~-~l~~-~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-FMKQ-NQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-HHHT-CSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH-HHhc-CCCCCC
Confidence 345899999999999999988763 4679999999999999999987532 124579999999874 1211 126899
Q ss_pred EEEecCCChh---------hHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEe
Q 021550 184 SIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 184 ~V~~d~~~~~---------~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
+|++|..++. ++++.+.+.|+|||.+++.+.+ .+.+..+...+++.|..+..+-.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~ 221 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYC 221 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEee
Confidence 9999887553 5789999999999999986432 24445556666666887766554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=6.4e-09 Score=83.44 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=94.6
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..++..+.+.+|..++|..+|.|+.+..+++. .++|+++|.++++++.|++. ...++.+.+.++...
T Consensus 4 pVll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~ 75 (182)
T d1wg8a2 4 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLK 75 (182)
T ss_dssp CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHH
T ss_pred chHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHH
Confidence 334455788889999999999999999999999886 58999999999999988763 234589998887641
Q ss_pred -CCCCcCCCCccEEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 173 -GFPDEFSGLADSIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
.++....+.+|.|++|+.-. ...|......|++||.+++.+.....-..+...+++
T Consensus 76 ~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e 146 (182)
T d1wg8a2 76 RHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRE 146 (182)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhh
Confidence 11111116799999987521 136888899999999999887766554445555554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.90 E-value=1.1e-09 Score=90.75 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=89.0
Q ss_pred ecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 93 YIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 93 ~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
.|..++ +|+.+++..++.+|||.|||+|.++..+.+.......++++|+++..+.. .....+..+|...
T Consensus 3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~ 72 (223)
T d2ih2a1 3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL 72 (223)
T ss_dssp CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence 344444 58889999999999999999999999888887667889999999875432 2236677888764
Q ss_pred CCCCCcCCCCccEEEecCCC----------------------------------hhhHHHHHHhcccCCcEEEEecCCH-
Q 021550 172 QGFPDEFSGLADSIFLDLPQ----------------------------------PWLAIPSAKKMLKQDGILCSFSPCI- 216 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~----------------------------------~~~~l~~~~~~LkpgG~lv~~~~~~- 216 (311)
.. .. ..||+|+.++|- ...++..+.+.|++||++++..|..
T Consensus 73 ~~-~~---~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~ 148 (223)
T d2ih2a1 73 WE-PG---EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW 148 (223)
T ss_dssp CC-CS---SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred cc-cc---cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeee
Confidence 22 22 679999988771 0245788999999999998876643
Q ss_pred ---HHHHHHHHHHhh
Q 021550 217 ---EQVQRSCESLRL 228 (311)
Q Consensus 217 ---~~~~~~~~~l~~ 228 (311)
.....+.+.|.+
T Consensus 149 l~~~~~~~lR~~l~~ 163 (223)
T d2ih2a1 149 LVLEDFALLREFLAR 163 (223)
T ss_dssp GTCGGGHHHHHHHHH
T ss_pred ccCcchHHHHHHHHh
Confidence 233444555544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.4e-08 Score=82.98 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=86.2
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..-++.+|+|+|+|.|..++.+|-. .|+.+++.+|.+...+...++.....++.+ +++.+.++++. ... ..||+
T Consensus 62 ~~~~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~-~~~---~~fD~ 135 (207)
T d1jsxa_ 62 PYLQGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEF-PSE---PPFDG 135 (207)
T ss_dssp GGCCSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTS-CCC---SCEEE
T ss_pred hhhcCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhh-ccc---cccce
Confidence 3345679999999999999999876 488999999999999999999999999977 99999988742 233 57999
Q ss_pred EEecC-CChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDL-PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~-~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++-. .....++..+.+.++++|.++++-.
T Consensus 136 V~sRA~~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 136 VISRAFASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp EECSCSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ehhhhhcCHHHHHHHHHHhcCCCcEEEEECC
Confidence 98744 3455678889999999999998743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.82 E-value=2.7e-08 Score=82.93 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=92.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
...+.+++|+|+|.|..++.++-.. |+.+++.+|.+...+...+.-....++.+ +.+++..++.........+.||+|
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEE
Confidence 3457899999999999999988765 78999999999999999999888999987 888888776422211112689999
Q ss_pred Eec-CCChhhHHHHHHhcccCCcEEEEecCC--HHHHHHHHHHHhh
Q 021550 186 FLD-LPQPWLAIPSAKKMLKQDGILCSFSPC--IEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d-~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~ 228 (311)
++- ......+++.+.+.+++||.++++-.. .+.+.+....+..
T Consensus 146 ~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~ 191 (239)
T d1xdza_ 146 TARAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITT 191 (239)
T ss_dssp EEECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHH
T ss_pred EEhhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHH
Confidence 874 445556888999999999999988443 3444555555544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.3e-08 Score=81.60 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----CCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-----~~~~~~ 180 (311)
++++.+|||+||++|+++..+++..++.++++++|+.+- ..+.+ +.+.++|+..... ......
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~-~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG-VDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT-EEEEESCTTSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC-ceEeecccccchhhhhhhhhccCc
Confidence 578999999999999999999999888899999998762 23444 8899999865110 001126
Q ss_pred CccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceee
Q 021550 181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 181 ~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
.+|+|++|+... ...+.-+.+.|++||.+++=.-..+....+...|+..|..+.
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~ 157 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 157 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEE
Confidence 799999986521 145777889999999999743334456667777776776554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.4e-08 Score=86.65 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=80.2
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..+++.+++.+++.|||||+|.|.+|..|++. ..+|+++|+++.+++..++.+.......+++++.+|+....
T Consensus 7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 444556889999999999999999999999999988 47999999999999999998876655556999999998644
Q ss_pred CCCcCCCCccEEEecCCChh--hHHHHHHh
Q 021550 174 FPDEFSGLADSIFLDLPQPW--LAIPSAKK 201 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~--~~l~~~~~ 201 (311)
++ .++.||.+.|-.. .++..+..
T Consensus 84 ~~-----~~~~vV~NLPY~Iss~il~~~~~ 108 (278)
T d1zq9a1 84 LP-----FFDTCVANLPYQISSPFVFKLLL 108 (278)
T ss_dssp CC-----CCSEEEEECCGGGHHHHHHHHHH
T ss_pred hh-----hhhhhhcchHHHHHHHHHHHHHh
Confidence 43 3578899988543 34444443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.77 E-value=1.2e-08 Score=93.04 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=97.2
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC------------cEEEEEeCCHHHHHHHHHHHHh
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT------------GHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~------------~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.+.+.|..+. +|+.++++.++.+|+|.+||+|.+...+.+++... ..++++|+++.....|+.++..
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 4566777765 58888999999999999999999999888876321 3599999999999999999888
Q ss_pred cCCCC-cEEEEEecCCCCCCCCcCCCCccEEEecCCC----------------------hhhHHHHHHhcccCCcEEEEe
Q 021550 156 TGVSS-FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ----------------------PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 156 ~g~~~-~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~----------------------~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++... ...+...|... ..+. ..||+|+.++|- ...++..+.+.|++||+++++
T Consensus 222 ~g~~~~~~~i~~~d~l~-~~~~---~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 222 HGIGTDRSPIVCEDSLE-KEPS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp TTCCSSCCSEEECCTTT-SCCS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccceeecCchhh-hhcc---cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 77642 35667777763 2333 689999999882 124899999999999999988
Q ss_pred cCC
Q 021550 213 SPC 215 (311)
Q Consensus 213 ~~~ 215 (311)
.|.
T Consensus 298 ~p~ 300 (425)
T d2okca1 298 LPD 300 (425)
T ss_dssp EEH
T ss_pred ech
Confidence 774
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.74 E-value=7.8e-08 Score=80.74 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=93.0
Q ss_pred HHHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.++...+ .....+|||+|||+|.++..++++. |..+++.+|+ |+.++ ..+..+++++..+|+. ..++.
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~-~~~p~- 139 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMF-ASVPQ- 139 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTT-TCCCC-
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcc-ccccc-
Confidence 3566666 4566899999999999999999996 8899999998 44332 3444567999999987 44443
Q ss_pred CCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEecCC--------HH--------------------HHHHH
Q 021550 178 FSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFSPC--------IE--------------------QVQRS 222 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~~~--------~~--------------------~~~~~ 222 (311)
.|++++ +.++. ..+|+++.+.|+|||.+++.... .. ...++
T Consensus 140 ----~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~ 215 (244)
T d1fp1d2 140 ----GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQY 215 (244)
T ss_dssp ----EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHH
T ss_pred ----ceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHH
Confidence 498875 44433 36799999999999999885321 00 13455
Q ss_pred HHHHhh-cCceeeEEEeeceeeEE
Q 021550 223 CESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 223 ~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
.+.+++ +|..++++..-...+.|
T Consensus 216 ~~ll~~AGF~~v~v~~~~~~~~~v 239 (244)
T d1fp1d2 216 EKLSKLSGFSKFQVACRAFNSLGV 239 (244)
T ss_dssp HHHHHHTTCSEEEEEEEETTTEEE
T ss_pred HHHHHHcCCCceEEEecCCCCEEE
Confidence 566666 78888876554444443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.71 E-value=1.2e-09 Score=92.01 Aligned_cols=90 Identities=27% Similarity=0.316 Sum_probs=74.2
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..+++.+++.++++|||||||+|.+|..|++. +.+|+++|+++.+++.+++++. ...+++++++|+.+..
T Consensus 15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ 88 (245)
T ss_dssp TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhccc
Confidence 445667999999999999999999999999999998 4799999999999888876543 2235999999998766
Q ss_pred CCCcCCCCccEEEecCCCh
Q 021550 174 FPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~ 192 (311)
++. ...+.|+.+.|-.
T Consensus 89 ~~~---~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 89 FPN---KQRYKIVGNIPYH 104 (245)
T ss_dssp CCC---SSEEEEEEECCSS
T ss_pred ccc---ceeeeEeeeeehh
Confidence 665 5677888888843
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=5.3e-08 Score=90.91 Aligned_cols=124 Identities=12% Similarity=0.070 Sum_probs=90.8
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC-----------------cEEEEEeCCHHHHHHHH
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-----------------GHVYTFDFHEQRAASAR 150 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~-----------------~~v~~vD~~~~~~~~a~ 150 (311)
.+.+.|..+. +|+.++.+.++.+|+|.+||+|.+...+.+++... ..++++|+++.+...|+
T Consensus 144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~ 223 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 223 (524)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence 3455666654 58889999999999999999999998887765211 25899999999999999
Q ss_pred HHHHhcCCCCc----EEEEEecCCCCC-CCCcCCCCccEEEecCCC-------------------hhhHHHHHHhcccCC
Q 021550 151 EDFERTGVSSF----VTVGVRDIQGQG-FPDEFSGLADSIFLDLPQ-------------------PWLAIPSAKKMLKQD 206 (311)
Q Consensus 151 ~~~~~~g~~~~----v~~~~~D~~~~~-~~~~~~~~~D~V~~d~~~-------------------~~~~l~~~~~~Lkpg 206 (311)
.++..++.... -.+...+..... ... ..||+|+.|+|- .+.+++++.+.|++|
T Consensus 224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~---~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENL---PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHTTTCCCBGGGTBSEEESCTTSHHHHTS---CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHhhcccccccccchhhhhhhhhhccccc---ccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 99887775421 123333332211 111 579999999882 135899999999999
Q ss_pred cEEEEecCC
Q 021550 207 GILCSFSPC 215 (311)
Q Consensus 207 G~lv~~~~~ 215 (311)
|+++++.|.
T Consensus 301 Gr~aiIlP~ 309 (524)
T d2ar0a1 301 GRAAVVVPD 309 (524)
T ss_dssp EEEEEEEEH
T ss_pred CcEEEEEeh
Confidence 999988774
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.50 E-value=1.9e-08 Score=80.16 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE- 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~- 177 (311)
.++.++++||++||.+|||. |.++.++++.++ ..+|+++|.+++.++.|++ .|.+..++....+..+ .+.+.
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~-~v~~~t 92 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIED-QVMKLT 92 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHH-HHHHHT
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCccccccccchhHHH-HHHHHh
Confidence 56788999999999999998 889999999863 4689999999999998875 4543312111111110 00010
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+||-....+ ..++.+.+.++|+|.++++.
T Consensus 93 ~g~G~D~vid~~g~~-~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGGS-ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCCH-HHHHHHHHHHhcCCEEEEEe
Confidence 114699977555544 47899999999999999865
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.47 E-value=6.2e-08 Score=77.09 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=75.7
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~ 176 (311)
++..++++||++||.+|+|. |.++..+++.++ ...|+++|.+++.++.|++ .|... ++..+-.+ ..+.+
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~---~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATH---VINSKTQDPVAAIKE 91 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSE---EEETTTSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeE---EEeCCCcCHHHHHHH
Confidence 56678899999999999998 778888888874 5688999999999998886 35443 22222111 11111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..++.+|+||-... ....++.+.++++|+|+++++.
T Consensus 92 ~t~gg~D~vid~~G-~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTG-SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSC-CHHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCC-cHHHHHHHHhcccCceEEEEEe
Confidence 12267999775544 4457899999999999999875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.47 E-value=2.2e-07 Score=82.62 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=81.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--------------cEEEEEecCCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--------------FVTVGVRDIQGQG 173 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--------------~v~~~~~D~~~~~ 173 (311)
.+.+|||..||+|..++..+... +..+|++.|+|++.++.+++|++.++..+ .+.+...|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 56899999999999999888775 46799999999999999999999887643 2445555553211
Q ss_pred CCCcCCCCccEEEecCC-ChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDEFSGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~-~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... ...||+|.+|+. .+..+|+.+.+.++.||.|++-++
T Consensus 124 ~~~--~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AER--HRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHS--TTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred Hhh--cCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 111 157999999975 557899999999999999998433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.44 E-value=3.5e-07 Score=72.13 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=76.1
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----- 173 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----- 173 (311)
.+...++++|++||.+|+|+ |.++.++++.. +++|+++|.+++.++.|++. +.. ..+ ..+.....
T Consensus 18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~-~~~~~~~~~~~~~ 88 (170)
T d1e3ja2 18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTL-VVDPAKEEESSII 88 (170)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEE-ECCTTTSCHHHHH
T ss_pred HHHHhCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEE-eccccccccchhh
Confidence 56778899999999999997 88889999886 36999999999999998863 433 222 22211111
Q ss_pred --CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 174 --FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 174 --~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+.+.....+|+||-... ....++.+.+.|+++|+++++...
T Consensus 89 ~~~~~~~g~g~D~vid~~g-~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 89 ERIRSAIGDLPNVTIDCSG-NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp HHHHHHSSSCCSEEEECSC-CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred hhhhcccccCCceeeecCC-ChHHHHHHHHHHhcCCceEEEecC
Confidence 11111256898765444 445789999999999999988654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.5e-07 Score=74.54 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=76.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~ 176 (311)
.++.+++++|++||.+|+|+ |.++..+++..+ ..+|+++|.+++.++.|++ .|.+..+.....|... ..+..
T Consensus 18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEG 92 (171)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccc
Confidence 56778999999999999998 778888888864 4689999999999998875 4544211111111100 00011
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+..+|+||-.... ...++.+.+.+++||+++++...
T Consensus 93 ~~g~g~Dvvid~~G~-~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 93 QLGCKPEVTIECTGA-EASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp HHTSCCSEEEECSCC-HHHHHHHHHHSCTTCEEEECSCC
T ss_pred cCCCCceEEEeccCC-chhHHHHHHHhcCCCEEEEEecC
Confidence 112468997755544 45889999999999999987553
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.43 E-value=1.4e-06 Score=71.98 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=81.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+.+...+.|+.+|+|+|||+|+++..++.+. +...|.++++--+..+. -......+ .+.+.+...+-. ..++.
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~-P~~~~~~~-~ni~~~~~~~dv-~~l~~--- 130 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-PIPMSTYG-WNLVRLQSGVDV-FFIPP--- 130 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCSTT-GGGEEEECSCCT-TTSCC---
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccC-Cccccccc-cccccchhhhhH-HhcCC---
Confidence 4455567899999999999999999988763 34577777773221000 00000111 123444433322 22333
Q ss_pred CCccEEEecCCC-----------hhhHHHHHHhcccCCcEEEE--ecCCHHHHHHHHHHHhhcCc
Q 021550 180 GLADSIFLDLPQ-----------PWLAIPSAKKMLKQDGILCS--FSPCIEQVQRSCESLRLNFT 231 (311)
Q Consensus 180 ~~~D~V~~d~~~-----------~~~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l~~~f~ 231 (311)
+.+|.|++|+.. ...+|+.+.+.|+|||.|++ +.|+...+.+.++.|+..|.
T Consensus 131 ~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 131 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHG 195 (257)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhC
Confidence 789999999752 12467888899999999987 57778888888888877554
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.43 E-value=2.9e-06 Score=70.84 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred HHHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.++..... ....+|||+|||+|.++..++++. |+.+++.+|+.+. ++ .....+++.+..+|+. ..+|.
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~-~~~P~- 139 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMF-VSIPK- 139 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTT-TCCCC-
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hh-------hcccCCceEEeccccc-ccCCC-
Confidence 35555554 335789999999999999999996 8899999998543 22 2334466999999987 34553
Q ss_pred CCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.|++++ +.+ +...+|+++.+.|+|||.+++.
T Consensus 140 ----ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 140 ----ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp ----CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred ----cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344443 233 2336899999999999998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=98.38 E-value=1.2e-07 Score=75.37 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=76.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
++..+++++|++||.+|||+ |.+++++++.++ ..+|+++|.+++.++.|++ .|.+..++....|... ......
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~ 94 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITEL 94 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhh
Confidence 45678899999999999999 889999999874 5789999999999988885 4654312111111100 000111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
..+.+|+||-....+ ..++.+.+.+++| |.++++..
T Consensus 95 ~~~G~d~vie~~G~~-~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 95 TAGGVDYSLDCAGTA-QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HTSCBSEEEESSCCH-HHHHHHHHTBCTTTCEEEECCC
T ss_pred hcCCCcEEEEecccc-hHHHHHHHHhhcCCeEEEecCC
Confidence 226799987555544 4789999999996 99998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.37 E-value=1.1e-06 Score=70.91 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=64.6
Q ss_pred CCCEEEEEcccccHHH----HHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH------------------HhcCC----
Q 021550 108 PGCLVLESGTGSGSLT----TSLARAVA---PTGHVYTFDFHEQRAASAREDF------------------ERTGV---- 158 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~----~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~------------------~~~g~---- 158 (311)
+.-+|+++|||+|--. +.+.+... ...+|++.|+++.+++.|++.. ...+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 3459999999999743 33344322 1247999999999999998521 11010
Q ss_pred --------CCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 159 --------SSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 159 --------~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
...+.+...+......+. .+.||+|++ +.+....+++.+.+.|+|||.|++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCC--CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 012344444444322211 168999985 222335789999999999999884
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.36 E-value=1.5e-07 Score=78.16 Aligned_cols=114 Identities=12% Similarity=-0.005 Sum_probs=74.6
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
|.++..+-+++.-..+.+|||+|++.|+.++.++..+ ++.++|+++|+++.....+.. ...++++..+|..
T Consensus 66 p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~ 139 (232)
T d2bm8a1 66 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCS 139 (232)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSS
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccc
Confidence 6776654444443345799999999999887766543 567999999998764432221 1245999999986
Q ss_pred CCCC-CCcCCCCccEEEecCCChhh-HHH--HHHhcccCCcEEEEec
Q 021550 171 GQGF-PDEFSGLADSIFLDLPQPWL-AIP--SAKKMLKQDGILCSFS 213 (311)
Q Consensus 171 ~~~~-~~~~~~~~D~V~~d~~~~~~-~l~--~~~~~LkpgG~lv~~~ 213 (311)
.... .......+|.||+|...... .+. ...+.|++||++++-.
T Consensus 140 ~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 140 DLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED 186 (232)
T ss_dssp CSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred cHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence 5222 11112468999998653321 111 3458999999999644
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=1.1e-07 Score=75.21 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+++||++||.+|+|+ |.++..+++.+ +++|+++|.+++.++.|++ .|.+. ++...-. ..+.+..
T Consensus 19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~---~i~~~~~-~~~~~~~ 88 (168)
T d1piwa2 19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH---YIATLEE-GDWGEKY 88 (168)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE---EEEGGGT-SCHHHHS
T ss_pred HHHHhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE---Eeeccch-HHHHHhh
Confidence 45678899999999999996 88999999987 4789999999999998875 46543 2221111 1111112
Q ss_pred CCCccEEEecCCChh-hHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPW-LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~-~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|.++....... ..+..+.+.|+|+|+++++..
T Consensus 89 ~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 89 FDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCC
T ss_pred hcccceEEEEecCCccchHHHHHHHhhccceEEEecc
Confidence 257999875433322 246778999999999998753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.35 E-value=1.1e-07 Score=77.02 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=74.4
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC---
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP--- 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--- 175 (311)
.++.+++++|++||.+|||+ |.++..+++.. +..+|+++|.+++.++.|++. |.+. .. +.....+.
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~----Ga~~----~~-~~~~~~~~~~i 86 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ----GFEI----AD-LSLDTPLHEQI 86 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT----TCEE----EE-TTSSSCHHHHH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhc----cccE----EE-eCCCcCHHHHH
Confidence 56788999999999999998 77888888876 467999999999999998853 5321 11 11111110
Q ss_pred -C-cCCCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEec
Q 021550 176 -D-EFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 -~-~~~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+ .....+|++|-.... ....++.+.+.++|||+++++.
T Consensus 87 ~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 87 AALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 0 012468998854321 2358999999999999999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=2.7e-07 Score=73.73 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=73.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC-c
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD-E 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~-~ 177 (311)
+..++++|++||.+|+|+ |.++.++++.++ ..+|+++|.+++.++.|++ .|.+..++....|..+ ..+.+ .
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhh
Confidence 456789999999999997 889999999974 3589999999999998875 4543212111111110 00000 0
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+||-.... ...++.+.+.|++||+++++.
T Consensus 97 ~~~g~Dvvid~vG~-~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILEATGD-SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEECSSC-TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEeecCCc-hhHHHHHHHHhcCCCEEEEEe
Confidence 11469997755443 347899999999999998874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=98.30 E-value=3.7e-07 Score=72.45 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=72.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
+++.++++||++||.+|||. |.++.++++..+ ..+|+++|.+++.++.|++ .|.+..++....|... ......
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh
Confidence 45678899999999999998 778888888874 5799999999999999985 4655422222222110 001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhccc-CCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lk-pgG~lv~~~ 213 (311)
.++.+|.||-....+. .+......++ ++|.++++.
T Consensus 94 ~~~G~d~vid~~g~~~-~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 94 TNGGVDYAVECAGRIE-TMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp TTSCBSEEEECSCCHH-HHHHHHHTBCTTTCEEEECC
T ss_pred cCCCCcEEEEcCCCch-HHHHHHHHHHHhcCceEEEE
Confidence 2257999886666554 5566665555 568988754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.27 E-value=1.9e-06 Score=71.96 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
...+|||+|+|+|.++..++++. |..+++.+|. ++.++ ..+..++++++.+|+.+ ..+ .+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~-~~p-----~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFT-SIP-----NADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTT-CCC-----CCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHH-------hCcccCceEEEecCccc-CCC-----CCcEEEE
Confidence 44689999999999999999996 7899999998 44333 34455679999999873 333 4799875
Q ss_pred -----cCCCh--hhHHHHHHhcccCC---cEEEEe
Q 021550 188 -----DLPQP--WLAIPSAKKMLKQD---GILCSF 212 (311)
Q Consensus 188 -----d~~~~--~~~l~~~~~~Lkpg---G~lv~~ 212 (311)
|.++. ..+|+++.+.|+|| |++++.
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 44544 36899999999998 667664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.26 E-value=2.9e-07 Score=72.34 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=73.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-- 176 (311)
.++.+++++|++||.+|+|+ |.++..+++..+ .+|+++|.+++.++.+++ .|.+. ++. ..+..+.+
T Consensus 19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~----~Ga~~---~i~--~~~~~~~~~~ 87 (166)
T d1llua2 19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK----LGASL---TVN--ARQEDPVEAI 87 (166)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSE---EEE--TTTSCHHHHH
T ss_pred HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc----cCccc---ccc--ccchhHHHHH
Confidence 45678999999999999998 888999999873 799999999999988875 46543 222 21111110
Q ss_pred -cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 -EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 -~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|.++.+...+ ..++.+.+.|+|+|+++++..
T Consensus 88 ~~~~~g~~~~i~~~~~~-~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 88 QRDIGGAHGVLVTAVSN-SAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp HHHHSSEEEEEECCSCH-HHHHHHHTTEEEEEEEEECCC
T ss_pred HHhhcCCcccccccccc-hHHHHHHHHhcCCcEEEEEEe
Confidence 0013355556555554 478899999999999998753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=98.25 E-value=5.1e-07 Score=71.79 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=72.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~ 177 (311)
++...++++|++||.+|+|. |.++.++++.. +..+|+++|.+++.++.|++. |.+..++....|..... ....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~ 95 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM 95 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh
Confidence 45667899999999999998 77888888886 358999999999999999864 55432221111111000 0111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+++.....+......+...++++|.++++.
T Consensus 96 ~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 96 TGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred ccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEE
Confidence 225799988766666544444444556669998865
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=4.4e-07 Score=76.25 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=69.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..|++.+++.+++.|||||||.|.+|..|++. ..+|+++|+++.+++..++... ..++++++.+|+....
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhc
Confidence 344556889999999999999999999999999987 4789999999999998886432 2245999999998643
Q ss_pred CCCcC--CCCccEEEecCCCh
Q 021550 174 FPDEF--SGLADSIFLDLPQP 192 (311)
Q Consensus 174 ~~~~~--~~~~D~V~~d~~~~ 192 (311)
+.+.. .+.--.|+.|.|-.
T Consensus 81 ~~~~~~~~~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 81 FGELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCTT
T ss_pred ccccccccCCCeEEEecchHH
Confidence 32210 01223567888854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.21 E-value=3.6e-07 Score=72.08 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.+...+++++++||.+|+ |. |.++..+++.. +..+|+++|.+++.++.+++. |.+..+.....|..+......
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA----GADYVINASMQDPLAEIRRIT 93 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHc----CCceeeccCCcCHHHHHHHHh
Confidence 567789999999999996 54 77788888876 357999999999999988863 543212111111111001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.+|+|+-. ......++.+.+.++|||+++++.-
T Consensus 94 ~~~~~d~vid~-~g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 94 ESKGVDAVIDL-NNSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp TTSCEEEEEES-CCCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hcccchhhhcc-cccchHHHhhhhhcccCCEEEEecc
Confidence 12569986644 4445578889999999999998743
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.3e-06 Score=68.76 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=74.6
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++||++||.+|+|+ |.++.++++.+ +.+++++|.+++..+.+++ .|.+..+ |..+.......
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad~~i-----~~~~~~~~~~~ 90 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGADEVV-----NSRNADEMAAH 90 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEE-----ETTCHHHHHTT
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCcEEE-----ECchhhHHHHh
Confidence 55778999999999999998 88999999986 4678899999998887764 4654312 22110000011
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...+|++|-....+ ..+..+.+.|+++|+++++...
T Consensus 91 ~~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 91 LKSFDFILNTVAAP-HNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp TTCEEEEEECCSSC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred cCCCceeeeeeecc-hhHHHHHHHHhcCCEEEEeccC
Confidence 15799987665543 3678899999999999988643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=3.4e-07 Score=72.60 Aligned_cols=106 Identities=16% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+.+..+++||++||..|+ |+ |..++.+++.+ +.+|++++.+++..+.+++ .|.+..++....|+.+......
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV 93 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh
Confidence 445678999999999996 54 88899999987 4789999989888877764 5665422111111111000001
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+|+-... ...++.+.+.|+|+|+++.+.
T Consensus 94 ~~~g~d~v~d~~g--~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 94 GEKGIDIIIEMLA--NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CTTCEEEEEESCH--HHHHHHHHHHEEEEEEEEECC
T ss_pred ccCCceEEeeccc--HHHHHHHHhccCCCCEEEEEe
Confidence 1256999775544 247899999999999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.03 E-value=2e-06 Score=67.81 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC--CCCCCCcCCCC
Q 021550 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ--GQGFPDEFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~--~~~~~~~~~~~ 181 (311)
.++||++||.+|+|+ |.++..+++..+ ...|+++|.+++.++.+++ .+.+. ++..+-. ...........
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~~---~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGADH---VVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCSE---EEETTSCHHHHHHHHTTTCC
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccce---eecCcccHHHHHHHhhCCCC
Confidence 478999999999998 778888888874 5789999999999888875 34432 2222110 00011111246
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+||-..... ..++.+.+.|+++|+++++..
T Consensus 101 ~d~vid~~g~~-~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 101 VNVAMDFVGSQ-ATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEEEEESSCCH-HHHHHGGGGEEEEEEEEECCC
T ss_pred ceEEEEecCcc-hHHHHHHHHHhCCCEEEEEeC
Confidence 99977555543 478999999999999998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.00 E-value=1.7e-06 Score=67.74 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=72.1
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF---- 174 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~---- 174 (311)
.+...+++||++||..|+|+ |..+..+++.. +.+|++++.+++.++.+++ .|.+. . .|..+..+
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~----~-~~~~~~~~~~~~ 87 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADL----V-VNPLKEDAAKFM 87 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSE----E-ECTTTSCHHHHH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcce----e-cccccchhhhhc
Confidence 55678899999999999998 77788888885 4689999999999988875 46442 1 11111111
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.... ..+|.++.+... ...+..+.+.|+|+|.++++..
T Consensus 88 ~~~~-~~~~~~v~~~~~-~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 88 KEKV-GGVHAAVVTAVS-KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHH-SSEEEEEESSCC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred cccc-CCCceEEeecCC-HHHHHHHHHHhccCCceEeccc
Confidence 1111 235555666654 4678999999999999998643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.92 E-value=4.5e-06 Score=65.82 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
+.+.++++||++||..|+|. |.++.++++.++ ...|+++|.+++.++.+++ .|.+..++.... +.....+...
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEM 94 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHH
Confidence 45678899999999999986 778888888874 5799999999999988885 465431211100 0000001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+.+|+||-... ....++.+...+++||.++++
T Consensus 95 ~~~g~D~vid~~G-~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 95 TDGGVDYSFECIG-NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp TTSCBSEEEECSC-CHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCCCcEeeecCC-CHHHHHHHHHhhcCCceeEEE
Confidence 2257999776554 445788999999999887654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=4.2e-06 Score=66.21 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=72.1
Q ss_pred HHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
+.+..+++||++||..|+|+ |..+.++++.. +++|++++.+++..+.+++ .|.+..++....|+.+ .+.+
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~-~v~~~ 92 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVE-RLKEI 92 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHH-HHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHH-HHHHH
Confidence 34556899999999997665 77889999987 4899999999999888875 4654322211122211 1111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+..+|+|+-. ... +.+..+...|+++|+++++..
T Consensus 93 t~g~g~d~v~d~-~g~-~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 93 TGGKKVRVVYDS-VGR-DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp TTTCCEEEEEEC-SCG-GGHHHHHHTEEEEEEEEECCC
T ss_pred hCCCCeEEEEeC-ccH-HHHHHHHHHHhcCCeeeeccc
Confidence 112578986544 333 368899999999999987644
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=5.7e-06 Score=65.64 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=71.6
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
+.+.+++++|++||..|. |. |.+++++++.. +.+++++..+++..+.+++ .|.+..+.....|+.+ .+.+
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~-~v~~~ 89 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFAD-EILEL 89 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHH-HHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccccccCCccCHHH-HHHHH
Confidence 446678999999999874 54 88999999997 4788888888887777663 4654312111111111 0100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+..+|+||-.... ..++.+.+.|+++|+++.+..
T Consensus 90 t~~~g~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLAG--EAIQRGVQILAPGGRFIELGK 125 (183)
T ss_dssp TTTCCEEEEEECCCT--HHHHHHHHTEEEEEEEEECSC
T ss_pred hCCCCEEEEEecccc--hHHHHHHHHhcCCCEEEEEcc
Confidence 012579998865554 378899999999999998743
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.77 E-value=1.1e-05 Score=63.53 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=70.0
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
.+...+++||++||..|. |+ |..+.++++.. +.+|++++.+++.++.+++ .|.+..+ |..+......
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~~i-----~~~~~~~~~~ 87 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEEAA-----TYAEVPERAK 87 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSEEE-----EGGGHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccceee-----ehhhhhhhhh
Confidence 566788999999999985 55 78889999986 4799999999988887764 5655322 2211100001
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+||- ... ..+..+.+.|+|+|+++.+.
T Consensus 88 ~~~g~D~v~d-~~G--~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 88 AWGGLDLVLE-VRG--KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp HTTSEEEEEE-CSC--TTHHHHHTTEEEEEEEEEC-
T ss_pred cccccccccc-ccc--hhHHHHHHHHhcCCcEEEEe
Confidence 1257999764 333 25788999999999999874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.73 E-value=9.2e-06 Score=64.47 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=72.5
Q ss_pred HHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+.+..++++|++||..|+++ |..+.++++.. +++|+++..+++..+.+++ .|.+..+.....+..+......
T Consensus 21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh
Confidence 45678899999999998865 67888899986 5799999999988777765 4554312111111110001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+||-... .+.++.+.+.|+++|.++++.
T Consensus 95 ~~~Gvd~v~D~vG--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNVG--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESSC--HHHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEecC--chhhhhhhhhccCCCeEEeec
Confidence 2257999765443 348899999999999999875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.70 E-value=4e-05 Score=63.56 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHhcCCCCC--CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--------CCcEEEEEec
Q 021550 99 FVIMYLELVPG--CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------SSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g--~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--------~~~v~~~~~D 168 (311)
.+...++++++ .+|||+-+|.|..+..++.. +++|+++|.++......+.++..... ..+++++.+|
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 36666666655 38999999999999999987 48999999999988777776654321 2358999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCC
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQ 191 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~ 191 (311)
..+ .+.. ....||+|++|+.-
T Consensus 154 s~~-~L~~-~~~~~DvIYlDPMF 174 (250)
T d2oyra1 154 SLT-ALTD-ITPRPQVVYLDPMF 174 (250)
T ss_dssp HHH-HSTT-CSSCCSEEEECCCC
T ss_pred HHH-HHhc-cCCCCCEEEECCCC
Confidence 864 2221 12579999999864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=97.61 E-value=3.8e-05 Score=60.21 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-CCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~ 177 (311)
+...++++||++||.+|+|. |..+..+++.. ....|+++|.+++.++.|++ .|.+..++....+.. .......
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKM 94 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhh
Confidence 45678899999999999998 55556666665 46899999999999988875 565432211111100 0000001
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~ 212 (311)
..+.+|+|+-..... ..+..+...+++| |.+++.
T Consensus 95 ~~~G~d~vid~~G~~-~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 95 TNGGVDFSLECVGNV-GVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp HTSCBSEEEECSCCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred ccCCcceeeeecCCH-HHHHHHHHHhhCCCcceeEE
Confidence 125799977655543 4667777776666 544443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.59 E-value=8.1e-05 Score=58.58 Aligned_cols=106 Identities=10% Similarity=-0.051 Sum_probs=72.3
Q ss_pred HHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+.......+|++||.-|.+. |.++.++++.. +++|++.--+++..+.+++ .|.+..++... +.. ......
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~-~~~-~~~~~~ 94 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLARED-VMA-ERIRPL 94 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEECC-----------C
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeeecch-hHH-HHHHHh
Confidence 33456678899999999654 77889999986 5899999998888888774 46554232211 111 111222
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+.+|+|+-..... .+....+.|+|+|+++++.+.
T Consensus 95 ~~~gvD~vid~vgg~--~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 95 DKQRWAAAVDPVGGR--TLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CSCCEEEEEECSTTT--THHHHHHTEEEEEEEEECSCC
T ss_pred hccCcCEEEEcCCch--hHHHHHHHhCCCceEEEeecc
Confidence 236899877555544 689999999999999988654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.41 E-value=0.00021 Score=55.89 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFP 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~ 175 (311)
+....+++||++||.+|+|. |..+..+++.+ ...+|+++|.+++..+.+++. |....+. ..+..+. ...
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~--~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEV----GATECVN--PQDYKKPIQEVLT 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT----TCSEEEC--GGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHh----CCeeEEe--cCCchhHHHHHHH
Confidence 45678899999999999987 55666777775 468999999999999988763 5432111 1111110 001
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEe
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSF 212 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~ 212 (311)
....+.+|+||-....+ ..++.+...++++ |.+++.
T Consensus 93 ~~~~~G~D~vid~~G~~-~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGRL-DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHTTSCBSEEEECSCCH-HHHHHHHHHBCTTTCEEEEC
T ss_pred HHhcCCCCEEEecCCch-hHHHHHHHHHhcCCcceEEe
Confidence 11225799977554444 4677777888876 555554
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.38 E-value=0.00017 Score=62.22 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=58.3
Q ss_pred eecccHHHHHHhcCCC------CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 92 LYIADISFVIMYLELV------PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~------~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
+.+..+..+++.+++. .++.|||||+|.|.+|..+++..+ ..+|+++|+++...+..++.+. .+++.++
T Consensus 21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii 95 (322)
T d1i4wa_ 21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQIL 95 (322)
T ss_dssp CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEE
T ss_pred CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEE
Confidence 3444555677777754 467899999999999999998742 3689999999999999887643 2348899
Q ss_pred EecCCC
Q 021550 166 VRDIQG 171 (311)
Q Consensus 166 ~~D~~~ 171 (311)
++|+..
T Consensus 96 ~~D~l~ 101 (322)
T d1i4wa_ 96 KRDPYD 101 (322)
T ss_dssp CSCTTC
T ss_pred eCchhh
Confidence 999863
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.00011 Score=58.18 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHhcCCCCC--CEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 100 VIMYLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 100 i~~~~~~~~g--~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
+....++++| ++||..|+ |. |..++++++.++ ...|+++..+++....+.+ ..|.+..++....|..+ .+.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~-~~~ 94 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAE-QLR 94 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHH-HHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhhh---cccceEEeeccchhHHH-HHH
Confidence 4466678877 78999884 54 999999999974 4578887777665544332 34554322222112111 111
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
......+|+||-... . ..++...+.|+++|+++.+.
T Consensus 95 ~~~~~GvDvv~D~vG-g-~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 95 EACPGGVDVYFDNVG-G-DISNTVISQMNENSHIILCG 130 (187)
T ss_dssp HHCTTCEEEEEESSC-H-HHHHHHHTTEEEEEEEEEC-
T ss_pred HHhccCceEEEecCC-c-hhHHHHhhhccccccEEEec
Confidence 111256999764443 2 47899999999999999874
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.25 E-value=0.00064 Score=52.72 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=70.4
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
......++.+||.-|++. |..+.++|+.+ +++|++.--+++..+.+++ .|.+. + +...|...........
T Consensus 17 ~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~----lGad~-v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 17 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE-V-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HTTCCGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE-E-EEHHHHCSSCCCSSCC
T ss_pred HhcCCCCCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHh----hcccc-e-EeccchhchhhhcccC
Confidence 344455677899887533 88999999998 4799999998888777765 46553 2 1112222222222223
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+|+-..... .+....+.|+++|+++++..
T Consensus 89 ~gvd~vid~vgg~--~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 89 QQWQGAVDPVGGK--QLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp CCEEEEEESCCTH--HHHHHHTTEEEEEEEEECCC
T ss_pred CCceEEEecCcHH--HHHHHHHHhccCceEEEeec
Confidence 6799977555544 78999999999999998754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.12 E-value=0.00013 Score=57.94 Aligned_cols=110 Identities=12% Similarity=0.206 Sum_probs=67.6
Q ss_pred HHHhcCCCCCCEEEEE--ccc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CC
Q 021550 100 VIMYLELVPGCLVLES--GTG-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GF 174 (311)
Q Consensus 100 i~~~~~~~~g~~VLdi--G~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~ 174 (311)
+.+..+++||.+||.+ |.| .|..+.++++.+ +.+|+++-.+++..+...+.+...|.+..+.....|..+. ..
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 97 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence 4456789999988887 333 367888899997 4688877545444454455555677765232211222110 00
Q ss_pred CC---cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 175 PD---EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 175 ~~---~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+ ...+.+|+||-....+ .+..+.+.|+|+|+++.+.
T Consensus 98 ~~~~~~~g~~vdvv~D~vg~~--~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALNCVGGK--SSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHTCCEEEEEESSCHH--HHHHHHHTSCTTCEEEECC
T ss_pred HHHHhhccCCceEEEECCCcc--hhhhhhhhhcCCcEEEEEC
Confidence 00 0124689876444332 5688899999999999875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.69 E-value=0.0054 Score=47.04 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=62.0
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
+|+-+|||. |...+..+...+...+|+++|.+++.++.|++. +..+ ....+... ... ...|+|++..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~--~~~---~~~dlIila~ 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAK--VED---FSPDFVMLSS 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGG--GGG---TCCSEEEECS
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhh--hhc---cccccccccC
Confidence 688999987 543333333334557999999999999888763 3322 12222211 111 3579999888
Q ss_pred CC--hhhHHHHHHhcccCCcEEEEecCCHHHH
Q 021550 190 PQ--PWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 190 ~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
|. ....+..+.+.++++..++-.+......
T Consensus 71 p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~ 102 (171)
T d2g5ca2 71 PVRTFREIAKKLSYILSEDATVTDQGSVKGKL 102 (171)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEECCSCCTHH
T ss_pred CchhhhhhhhhhhccccccccccccccccHHH
Confidence 73 3457888889999988877655544433
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.52 E-value=0.001 Score=54.73 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=63.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC---------------------------------------CcEEEEEe
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAP---------------------------------------TGHVYTFD 140 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~---------------------------------------~~~v~~vD 140 (311)
.+.+..-..+..++|-.||||.+.+..+....+ ...+++.|
T Consensus 42 al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D 121 (249)
T d1o9ga_ 42 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 121 (249)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccc
Confidence 344455566678999999999999877654210 12456778
Q ss_pred CCHHHHHHH---HHHHHhcCCCCcEEEEEecCCCCC-CCC-cCCCCccEEEecCC
Q 021550 141 FHEQRAASA---REDFERTGVSSFVTVGVRDIQGQG-FPD-EFSGLADSIFLDLP 190 (311)
Q Consensus 141 ~~~~~~~~a---~~~~~~~g~~~~v~~~~~D~~~~~-~~~-~~~~~~D~V~~d~~ 190 (311)
+++.+++.| ++|+...|+...+.+...|+.+.. +.+ ......++|++|+|
T Consensus 122 ~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP 176 (249)
T d1o9ga_ 122 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP 176 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred cCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence 888888888 468889999888999999986411 100 01145789999988
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.48 E-value=0.003 Score=51.69 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=43.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (311)
.++.... .+|+.|||.-+|+|..+.++.+. +.+.+++|++++.++.|++++.
T Consensus 204 ~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 204 RIIRASS-NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHC-CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 3444443 78999999999999988766555 5899999999999999999875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.45 E-value=0.0018 Score=49.74 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++.+|+.+|+|. |..++..|..+ ++.|+.+|.+++.++..+..+... ++....+-.. +.+.. ...|+||
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~--l~~~~-~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGSR-----VELLYSNSAE--IETAV-AEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHH--HHHHH-HTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhccc-----ceeehhhhhh--HHHhh-ccCcEEE
Confidence 457999999998 88999999997 589999999999998887765431 4444332211 11100 3589998
Q ss_pred ecC-----CChhhHHHHHHhcccCCcEEE
Q 021550 187 LDL-----PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 187 ~d~-----~~~~~~l~~~~~~LkpgG~lv 210 (311)
... +.|.-+-+++.+.+|||..++
T Consensus 101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 101 GAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred EeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 532 244445688999999999988
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.00082 Score=52.94 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc---cccCCCCceEEccCCcEE-EEecCCHHHHh--hhhcC
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD---WIGKPFGSMVFSNKGGFV-YLLAPTPELWT--LVLSH 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~---~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~--~~~~~ 87 (311)
..+++||+|++.. ...|+.|..|+.|....+. ..|... ..|.+. |+..|....+. ..++.
T Consensus 83 ~~~~~GdrV~~~~--------~~~cg~c~~c~~G~~~~c~~~~~~g~~~------~~G~~aey~~~~~~~~~~lP~~~~~ 148 (185)
T d1pl8a1 83 KHLKPGDRVAIEP--------GAPRENDEFCKMGRYNLSPSIFFCATPP------DDGNLCRFYKHNAAFCYKLPDNVKP 148 (185)
T ss_dssp CSCCTTCEEEECS--------EECSSCCHHHHTTCGGGCTTCEETTBTT------BCCSCBSEEEEEGGGEEECCTTCGG
T ss_pred eeecccccceecc--------eeccccchhhccchhchhccceeeeccc------ccccceEEEEEchHHEEECCCCCCH
Confidence 3589999999876 4568889888888654432 222110 011111 22222221111 11122
Q ss_pred CceeeecccHH-HHHHhcCCCCCCEEEEEcccccH
Q 021550 88 RTQILYIADIS-FVIMYLELVPGCLVLESGTGSGS 121 (311)
Q Consensus 88 ~~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~ 121 (311)
......|-..+ ..++.+.+.+|++||. |||+|.
T Consensus 149 ~~aa~~pl~~a~~a~~~~~~~~G~~VlI-g~GP~~ 182 (185)
T d1pl8a1 149 LVTHRFPLEKALEAFETFKKGLGLKIML-KCDPSD 182 (185)
T ss_dssp GEEEEEEGGGHHHHHHHHHTTCCSEEEE-ECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEE-EeCCCC
Confidence 22333443322 3567778899999985 999873
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.41 E-value=0.015 Score=44.24 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=62.9
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|.-||+|. |. ++..+.+. +.+|+++|.+++.++.+++ .+.-+ ....+.. .+ ...|+||+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~---g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~--~~-----~~~DiIil 63 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR---GHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDLS--LL-----QTAKIIFL 63 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHH----TTSCS---EEESCGG--GG-----TTCSEEEE
T ss_pred CEEEEEeecHHHHHHHHHHHHC---CCEEEEEECCchHHHHHHH----hhccc---eeeeecc--cc-----cccccccc
Confidence 3688899986 44 44444333 5799999999998887765 33322 1112221 11 45899999
Q ss_pred cCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 188 DLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 188 d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
..|.. ..+++++...++++..++-.+............+
T Consensus 64 avp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~ 104 (165)
T d2f1ka2 64 CTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQL 104 (165)
T ss_dssp CSCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHH
T ss_pred cCcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHh
Confidence 88743 3578888888999988876655544444433333
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0024 Score=49.80 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=63.5
Q ss_pred CCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCC
Q 021550 106 LVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~ 181 (311)
..++.+||..|.. .|..++++++.+ +.+|+++..+++..+.+++ .|.+. ++.-+-.+ ..+.. ..
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad~---vi~~~~~~~~~~l~~---~~ 96 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGASR---VLPRDEFAESRPLEK---QV 96 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEEE---EEEGGGSSSCCSSCC---CC
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hcccc---ccccccHHHHHHHHh---hc
Confidence 3345588877653 377889999997 5799999999998877764 35433 22222111 22222 56
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|.|+ |.... ..+....+.|+++|+++.+..
T Consensus 97 ~~~vv-D~Vgg-~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 97 WAGAI-DTVGD-KVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp EEEEE-ESSCH-HHHHHHHHTEEEEEEEEECCC
T ss_pred CCeeE-EEcch-HHHHHHHHHhccccceEeecc
Confidence 78865 44332 378999999999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.92 E-value=0.0073 Score=49.91 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=45.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
.++... -.+|+.|||.-+|+|..+.+..+. +.+.+++|++++..+.|++++...
T Consensus 199 ~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 199 RLVRAL-SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHH-SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHhh-cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 344443 368999999999999998777666 589999999999999999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.86 E-value=0.0042 Score=52.43 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
.++... -.+|+.|||.-||+|..+.++.+. +.+.+++|++++.++.|++++...
T Consensus 242 rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 242 FFIRML-TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHH-CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred Hhhhhc-ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 455444 468999999999999988776655 689999999999999999876543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.035 Score=45.48 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
+|+.+|..|+++|. +..+++.+ ..+.+|+..+.+++.++.+.+.+...+...++.++.+|+.+.. ... ...
T Consensus 9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 57889999988754 32333322 2357999999999999998888887776666888999997511 000 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 88 g~iD~lVnnA 97 (257)
T d1xg5a_ 88 SGVDICINNA 97 (257)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEecc
Confidence 5789988654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.55 E-value=0.0064 Score=47.24 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---C--cEEEEEecCCC--CCCCCc--
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---S--FVTVGVRDIQG--QGFPDE-- 177 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~--~v~~~~~D~~~--~~~~~~-- 177 (311)
|+.+||.+|+|. |..++..|..+ ++.|+.+|.+++.++..++....+-.. . ..+...+.+.. ..+...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 457999999998 88888889887 589999999999988887643221100 0 00000000000 000000
Q ss_pred -----CCCCccEEEecC-----CChhhHHHHHHhcccCCcEEE
Q 021550 178 -----FSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 178 -----~~~~~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv 210 (311)
.-...|+||... ..|.-+-+++.+.+|||..++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 003589988532 244445688999999999988
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.27 E-value=0.072 Score=40.58 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=62.1
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-CCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~~~~~D~V~~ 187 (311)
++|..+|+|. |......+... +..|+.+|.+++.++..++.-................. .....+ .-..+|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-HhcCCCEEEE
Confidence 5789999998 54433333332 47999999999988776653110000000011100000 000010 0045899998
Q ss_pred cCCCh--hhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhh
Q 021550 188 DLPQP--WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL 228 (311)
Q Consensus 188 d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~ 228 (311)
..+.. ..+++++.+.|+++-.+++ .+.. .....+...+..
T Consensus 79 ~v~~~~~~~~~~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~ 121 (184)
T d1bg6a2 79 VVPAIHHASIAANIASYISEGQLIIL-NPGATGGALEFRKILRE 121 (184)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHhhhccCCCCEEEE-eCCCCccHHHHHHHHHH
Confidence 77644 4678889999999887664 4322 222334444544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.04 Score=45.49 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------CCCcC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FPDEF 178 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~~~~ 178 (311)
|++|.-|-.|+++++..+++.+. ++.+|+..+.+++.++.+.+.+...+. .+.++..|+.+.. +.+ .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~-~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRK-E 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHH-h
Confidence 67885554455555555554431 357999999999999998888877664 3788899987511 111 1
Q ss_pred CCCccEEEecCCC------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|++|.+..- +....+.+.+.|+++|.++..+.
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 1579998875430 11346777889999999887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.56 E-value=0.11 Score=37.43 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=55.6
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
.+|+.+|+|. |......+.. .+..|+.+|.+++.++.+.+. .+ +.++.+|..+.. +....-..+|.++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCCcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence 3688888865 4443333333 246899999999988876643 22 567889987621 11111146888887
Q ss_pred cCCChhh--HHHHHHhcccCCcEEE
Q 021550 188 DLPQPWL--AIPSAKKMLKQDGILC 210 (311)
Q Consensus 188 d~~~~~~--~l~~~~~~LkpgG~lv 210 (311)
-.++... .+....+.+.+...++
T Consensus 72 ~t~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 72 VTGKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCcHHHHHHHHHHHHHcCCceEEE
Confidence 6665543 2344455677775544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.36 E-value=0.071 Score=44.49 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=69.6
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
.+|||+-||.|++...+-++ +--.+.++|+++.+.+..+.|. . -.+..+|+.+....+. ..+|+++..+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~--~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEF--PKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGS--CCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHc--ccccEEeecc
Confidence 37999999999999887765 3445679999999888777663 2 2456788875322221 4689998777
Q ss_pred CChh---------------h---HHHHHHhcccCCcEEEEecC------CHHHHHHHHHHHhh
Q 021550 190 PQPW---------------L---AIPSAKKMLKQDGILCSFSP------CIEQVQRSCESLRL 228 (311)
Q Consensus 190 ~~~~---------------~---~l~~~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~ 228 (311)
|+.. . .+-.+...++|.-.++=-++ ....+..+...+..
T Consensus 70 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~ 132 (324)
T d1dcta_ 70 PCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDN 132 (324)
T ss_dssp CCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhh
Confidence 6431 1 23345667789755554343 22345555555554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.11 E-value=0.16 Score=41.13 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=53.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.++.+|..|+++| ++..+++.+. .+.+|+.++.+++.++.+.+.+...+. .+.+...|+.+.. + .. ...
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4677888886654 6666666553 347999999999999988888876553 3888899997511 0 00 012
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 86 g~iDilvnna 95 (251)
T d2c07a1 86 KNVDILVNNA 95 (251)
T ss_dssp SCCCEEEECC
T ss_pred CCceeeeecc
Confidence 6789888653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.08 E-value=0.11 Score=42.37 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+++|..|.++|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+...+. .+..+..|+.+.. +.. ...
T Consensus 4 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57889988877653 33333222 1257999999999999988888876653 3788899987511 000 011
Q ss_pred CCccEEEec
Q 021550 180 GLADSIFLD 188 (311)
Q Consensus 180 ~~~D~V~~d 188 (311)
+..|++|.+
T Consensus 81 g~iDilVnn 89 (260)
T d1zema1 81 GKIDFLFNN 89 (260)
T ss_dssp SCCCEEEEC
T ss_pred CCCCeehhh
Confidence 578988864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.88 E-value=0.067 Score=44.99 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=70.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+.+|||+.||.|+++..|-+. +--.+.++|+++.+++..+.|.... .++|+.+..... ...+|+++.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~--~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT--IPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG--SCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh--cceeeeeec
Confidence 5689999999999999887654 3345677999999999988886321 146776422221 146899987
Q ss_pred cCCCh------------------hhHHHHHHhcccCCcEEEEecCC------HHHHHHHHHHHhh
Q 021550 188 DLPQP------------------WLAIPSAKKMLKQDGILCSFSPC------IEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~ 228 (311)
.+|+. +..+-.+.+.++|.=.++=-++. ...+..+...|+.
T Consensus 78 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~ 142 (327)
T d2c7pa1 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNE 142 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHh
Confidence 76633 12234455667886554433332 2345666667766
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.69 E-value=0.16 Score=41.34 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCCEEEEEcccccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------c
Q 021550 108 PGCLVLESGTGSGS---LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------E 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~ 177 (311)
.|+++|.-|+++|. .+..|++. +.+|+..|.+++.++.+.+.+...+....+.....|+.+.. ... .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE---GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 47788988887754 23333333 58999999999998888777666554445888899987511 100 0
Q ss_pred CCCCccEEEec
Q 021550 178 FSGLADSIFLD 188 (311)
Q Consensus 178 ~~~~~D~V~~d 188 (311)
..+..|++|.+
T Consensus 80 ~~G~iDiLVnn 90 (258)
T d1iy8a_ 80 RFGRIDGFFNN 90 (258)
T ss_dssp HHSCCSEEEEC
T ss_pred HhCCCCEEEEC
Confidence 11578998864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.63 E-value=0.16 Score=41.39 Aligned_cols=79 Identities=18% Similarity=0.342 Sum_probs=52.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------CCCcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FPDEF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~~~~ 178 (311)
.|+++|.-|+++|. +..+++.+ ..+.+|+..|.+++.++.+.+.+...+. .+.+...|+.+.. ..+..
T Consensus 7 ~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889998987653 33333333 1257999999999999888887776653 3778889987511 11111
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+..|+++.+.
T Consensus 84 ~~~idilvnnA 94 (259)
T d2ae2a_ 84 HGKLNILVNNA 94 (259)
T ss_dssp TTCCCEEEECC
T ss_pred CCCceEEEECC
Confidence 24689988653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.03 E-value=0.14 Score=41.62 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=52.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----C---CCcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----F---PDEF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~---~~~~ 178 (311)
.|+++|..|+++|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+. .+.....|+.+.. + .+..
T Consensus 7 kgK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47889998987654 33333322 2357999999999998888887766553 3888899987511 1 1111
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+..|+++.+.
T Consensus 84 ~g~idilvnnA 94 (259)
T d1xq1a_ 84 GGKLDILINNL 94 (259)
T ss_dssp TTCCSEEEEEC
T ss_pred CCCcccccccc
Confidence 25689988653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.91 E-value=0.26 Score=40.00 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------CCCcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------FPDEF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--------~~~~~ 178 (311)
.|+++|..|+..| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. +.+...|+.+.. ..+..
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~--~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN--VEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEeecCCHHHHHHHHHHHHHHh
Confidence 5789999998765 333333222 23579999999999999888888776643 778889987511 11112
Q ss_pred CCCccEEEec
Q 021550 179 SGLADSIFLD 188 (311)
Q Consensus 179 ~~~~D~V~~d 188 (311)
.+..|+++.+
T Consensus 82 ~g~idilinn 91 (258)
T d1ae1a_ 82 DGKLNILVNN 91 (258)
T ss_dssp TSCCCEEEEC
T ss_pred CCCcEEEecc
Confidence 2567887754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.78 E-value=0.23 Score=35.66 Aligned_cols=98 Identities=6% Similarity=-0.064 Sum_probs=57.2
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~~~~D~V~~d 188 (311)
+++.+|+|. |......+.. .+..|+.+|.+++.++.++. .+ .....+|..+... ....-..+|.|++.
T Consensus 2 ~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHH--CCCeEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEEE
Confidence 467777765 4444333333 25789999999999887642 22 4566788875321 11111467888887
Q ss_pred CCChhh--HHHHHHhcccCCcEEEEecCCHHH
Q 021550 189 LPQPWL--AIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 189 ~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
.++... .+-.+...+.+...+++-....+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~ 103 (134)
T d2hmva1 72 IGANIQASTLTTLLLKELDIPNIWVKAQNYYH 103 (134)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCSHHH
T ss_pred cCchHHhHHHHHHHHHHcCCCcEEeecccHhH
Confidence 775432 233334445566677766555443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.28 Score=36.18 Aligned_cols=102 Identities=9% Similarity=-0.133 Sum_probs=60.6
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
.+|+.+|+|. |...+..+.. .+..++.+|.+++......+.....+ +.++.+|..+.. +....-...|.|++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~--~~~~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQ--RGQNVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhccccCCEEEE
Confidence 4688888875 4443333333 24688999999875543333332222 788999987621 11111146889888
Q ss_pred cCCChhhHH--HHHHhcccCCcEEEEecCCHH
Q 021550 188 DLPQPWLAI--PSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 188 d~~~~~~~l--~~~~~~LkpgG~lv~~~~~~~ 217 (311)
..++....+ -...+.+.|...+++.....+
T Consensus 78 ~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~ 109 (153)
T d1id1a_ 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred ccccHHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence 777655332 334556678877777655444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.49 E-value=0.2 Score=43.56 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
+.++..++|+|+-.|..+..++..... ..+|+++|.++...+..++++..+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 567889999999999999888776533 36999999999999999999876654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.37 E-value=0.26 Score=39.74 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH-HhcCCCCcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDF-ERTGVSSFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.|+++|.-|++.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+ +..+. .+.+...|+.+.. +.. ..
T Consensus 4 ~gK~~lITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47889999987653 33333322 12589999999998877666554 33343 3778889987511 100 01
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+.+|++|.+.
T Consensus 81 ~g~iDiLVnnA 91 (251)
T d1vl8a_ 81 FGKLDTVVNAA 91 (251)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 15789988653
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.80 E-value=1.5 Score=31.88 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=58.8
Q ss_pred EEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|.-||||. |. +...+++. +..+++.+|.+++.++...+. .+ +... .+.. .. ...|+||+.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l~~~---~~----~~~~-~~~~--~v-----~~~Div~la 64 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKE---LG----VETS-ATLP--EL-----HSDDVLILA 64 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHH---TC----CEEE-SSCC--CC-----CTTSEEEEC
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCCcEEEEeCChhHHHHhhhh---cc----cccc-cccc--cc-----cccceEEEe
Confidence 678889887 44 33445554 247999999999887765543 23 2222 2221 12 347999988
Q ss_pred CCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 189 LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 189 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.+ | ..+..+.+-+++.+.+++..........+.+.+
T Consensus 65 vk-P-~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l 100 (152)
T d1yqga2 65 VK-P-QDMEAACKNIRTNGALVLSVAAGLSVGTLSRYL 100 (152)
T ss_dssp SC-H-HHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHT
T ss_pred cC-H-HHHHHhHHHHhhcccEEeecccCCCHHHHHHHh
Confidence 76 3 356677777777777766544333444444444
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.64 E-value=0.023 Score=43.76 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=48.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhh--hhcCC-c
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLSHR-T 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~--~~~~~-~ 89 (311)
..+++||+|++.. ...|+.|..|..|....+.-.....+. ...|++. |+..|....+.. .++.. .
T Consensus 77 ~~~~~GdrV~~~~--------~~~~~~c~~c~~g~~~~c~~~~~~~~~---~~~G~~aey~~v~~~~~~~iP~~~~~~~a 145 (178)
T d1e3ja1 77 KHLKKGDRVAVEP--------GVPCRRCQFCKEGKYNLCPDLTFCATP---PDDGNLARYYVHAADFCHKLPDNCNVKQL 145 (178)
T ss_dssp CSCCTTCEEEECC--------EECCSSSHHHHTTCGGGCTTCEETTBT---TBCCSCBSEEEEEGGGEEECCTTCCCGGG
T ss_pred CCCCCCCEEEECc--------ccccCCccccccCCccccccccceecc---ccccccceeeeecccceeeCCCCCCHHHH
Confidence 3589999999966 556888888888875554311110011 0112222 344443222211 11211 1
Q ss_pred eee-ecccH-HHHHHhcCCCCCCEEEEEcc
Q 021550 90 QIL-YIADI-SFVIMYLELVPGCLVLESGT 117 (311)
Q Consensus 90 ~~~-~~~~~-~~i~~~~~~~~g~~VLdiG~ 117 (311)
..+ .+-.. -..++.+++++|++||.+|.
T Consensus 146 a~~~~~~~ta~~a~~~~~~~~g~~VlVig~ 175 (178)
T d1e3ja1 146 VTHSFKLEQTVDAFEAARKKADNTIKVMIS 175 (178)
T ss_dssp EEEEEEGGGHHHHHHHHHHCCTTCSEEEEE
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence 222 22222 23567888999999998864
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.60 E-value=0.36 Score=36.71 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=72.2
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|.-||||. |..-+..+... +...+++ +|.+++..+... ...+......+ ..|.. ..+.. ..+|+|++.
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~---~~~~~~~~~~~-~~~~~-~ll~~---~~iD~v~I~ 73 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFA---TANNYPESTKI-HGSYE-SLLED---PEIDALYVP 73 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHH---HHTTCCTTCEE-ESSHH-HHHHC---TTCCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccch---hccccccceee-cCcHH-Hhhhc---cccceeeec
Confidence 688899996 54434444443 5678886 488887655443 34454432332 23433 22222 568999987
Q ss_pred CCChhhHHHHHHhcccCCcEEEEecC---CHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 189 LPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 189 ~~~~~~~l~~~~~~LkpgG~lv~~~~---~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
.|.. .-++.+..+|+.|=.+++--| +.++..++.+..++. .........++|...
T Consensus 74 tp~~-~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~--~~~~~v~~~~r~~~~ 131 (184)
T d1ydwa1 74 LPTS-LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN--GVQIMDGTMWVHPQE 131 (184)
T ss_dssp CCGG-GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT--TCCEEECCCGGGCHH
T ss_pred ccch-hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhh--CCEEEEEEeeecChH
Confidence 6654 456778888888877766444 556666666666552 223344455555543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.37 E-value=0.36 Score=39.25 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=49.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~------~~~ 179 (311)
.|+.+|..|+++|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+.. ...+.+...|+.+. .+.. ...
T Consensus 5 ~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999977653 33444333 2357999999999988877766543 23477888998751 1100 011
Q ss_pred CCccEEEec
Q 021550 180 GLADSIFLD 188 (311)
Q Consensus 180 ~~~D~V~~d 188 (311)
+.+|++|.+
T Consensus 81 g~iD~lVnn 89 (268)
T d2bgka1 81 GKLDIMFGN 89 (268)
T ss_dssp SCCCEEEEC
T ss_pred CCcceeccc
Confidence 578998854
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.083 Score=44.49 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=49.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTG-HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|+|+.||.|++...+-+. |-.. .+.++|+++.+++..+.|.. + ..+...|+.+....+.....+|+++..
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~-----~-~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC-----C-CCcccCchhhCCHhHcCCCCccEEEee
Confidence 58999999999998877555 2122 36789999998888777632 2 345567776422211111368999877
Q ss_pred CCC
Q 021550 189 LPQ 191 (311)
Q Consensus 189 ~~~ 191 (311)
+|+
T Consensus 76 pPC 78 (343)
T d1g55a_ 76 PPC 78 (343)
T ss_dssp CC-
T ss_pred ccc
Confidence 773
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.21 E-value=1.9 Score=31.33 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=61.8
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-C-CCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-G-VSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g-~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.+|-.+|+|. |....+.+...+-..++..+|++++..+--..-+... . ....+.+...|... + ...|
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~--l-----~daD 76 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD--C-----RDAD 76 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG--T-----TTCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH--h-----ccce
Confidence 3467899999976 6544444444333468999999988754322222211 1 12224555555432 2 3479
Q ss_pred EEEecCCCh--------------hh----HHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLPQP--------------WL----AIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~~~--------------~~----~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+|++....+ .. +.+.+.+. .|.+.+++.+...+.+..+....
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd~~t~~~~k~ 136 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKF 136 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHH
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccHHHHHHHHHH
Confidence 988643211 12 23333332 58899888776666555554433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.20 E-value=0.29 Score=34.93 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=65.2
Q ss_pred EEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecCC
Q 021550 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDLP 190 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~~ 190 (311)
|+.+| .|..+..+++.+. +..++.+|.+++..+.++. .+ +.++.+|..+.. +....-..++.+++..+
T Consensus 3 ivI~G--~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 3 VVICG--WSESTLECLRELR-GSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp EEEES--CCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred EEEEC--CCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 45555 5667778888774 4568889999998776643 23 678889987511 11111146888888777
Q ss_pred Chhh--HHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 191 QPWL--AIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 191 ~~~~--~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
+... .+-...+.+.|...+++.....+....+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l 105 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEAERYENIEQL 105 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred chhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence 6553 2344566788998888776665544443
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.04 Score=42.79 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeeccccee----eCcccccCCCCceEE-ccCCcEE-EE-ecCCHHHHhhhhc
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAF----KHSDWIGKPFGSMVF-SNKGGFV-YL-LAPTPELWTLVLS 86 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~----~~~~~iG~~~G~~~~-~~~~~~~-~~-~~p~~~~~~~~~~ 86 (311)
..++.||+|++.. ...||.|..|+.|.- ....+.|..-+.... ...|++. |+ +.|....+ .++
T Consensus 83 ~~~~~Gd~V~~~~--------~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~--~ip 152 (184)
T d1vj0a1 83 ELLKPGDLIVWNR--------GITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVL--KVS 152 (184)
T ss_dssp CBCCTTCEEEECS--------EECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEE--EEC
T ss_pred ccccceeeeEecc--------ccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEE--ECC
Confidence 4589999999977 557999999988763 333455533221110 1123222 22 23322211 222
Q ss_pred CCceeeeccc-HHHHHHhcCCCCCCEEEEE
Q 021550 87 HRTQILYIAD-ISFVIMYLELVPGCLVLES 115 (311)
Q Consensus 87 ~~~~~~~~~~-~~~i~~~~~~~~g~~VLdi 115 (311)
.....-.|.. +...+..+++++|++||..
T Consensus 153 ~~l~~~~pl~~A~~a~~~~~~~~G~~VlI~ 182 (184)
T d1vj0a1 153 EKITHRLPLKEANKALELMESREALKVILY 182 (184)
T ss_dssp TTCCEEEEGGGHHHHHHHHHHTSCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCCEEEEe
Confidence 2222222322 2246677788888888753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.53 E-value=0.57 Score=37.99 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCC------cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPD------EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~------~~ 178 (311)
.|+++|..|+++|. +..+++.+ ..+.+|+..+.+ ++.++.+.+.+...+. .+.+...|+.+. .+.. ..
T Consensus 17 ~gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 47889988887653 33333332 125789998887 5567776666666654 388888998751 1100 01
Q ss_pred CCCccEEEecCC------------------------ChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLP------------------------QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~------------------------~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+..|+++.+.. .++...+.+.+.|+.+|.+++..
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 156898876432 11235677788888888877653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.51 Score=37.73 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.|+++|.-|+++|. +..+++.+ ..+.+|+..+.+++.++.+.+.+. .+......|+.+.. . .. ...
T Consensus 3 ~gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 47788888877653 33344333 235799999999998887766543 23677888987511 0 00 011
Q ss_pred CCccEEEecCC------------------------ChhhHHHHHHhcc--cCCcEEEEecC
Q 021550 180 GLADSIFLDLP------------------------QPWLAIPSAKKML--KQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~------------------------~~~~~l~~~~~~L--kpgG~lv~~~~ 214 (311)
+..|+++.+.. .+....+.+.+.| +.+|.++..+.
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS 137 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS 137 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence 57899886532 1113455666666 35788887644
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.04 E-value=0.11 Score=41.74 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=46.0
Q ss_pred EEEecCCC--CCCCCcCCCCccEEEecCCCh-------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 164 VGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 164 ~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~-------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
+.++|..+ ..+++ +++|+|+.|+|-. ...+.++.++|+|+|.++++... .....+
T Consensus 7 i~~gDcle~l~~lpd---~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~-~~~~~~ 82 (256)
T d1g60a_ 7 IHQMNCFDFLDQVEN---KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP-FNCAFI 82 (256)
T ss_dssp EEECCHHHHHHHSCT---TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH-HHHHHH
T ss_pred EEeccHHHHHhhCcC---CCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc-hhhhhh
Confidence 66788764 24565 7899999999821 13678899999999998876543 345556
Q ss_pred HHHHhh-cCceee
Q 021550 223 CESLRL-NFTDIR 234 (311)
Q Consensus 223 ~~~l~~-~f~~~~ 234 (311)
...+.. +|....
T Consensus 83 ~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 83 CQYLVSKGMIFQN 95 (256)
T ss_dssp HHHHHHTTCEEEE
T ss_pred hhhhhcccceeee
Confidence 666665 554433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.74 Score=36.71 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=47.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-----CCCCcCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-----GFPDEFSGL 181 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~~~~ 181 (311)
.|+++|..|+++| ++..+++.+ ..+.+|+.+|.+++.++.+.+.. .+ +..+..|+.+. .+... +.
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~-~~~~~~Dv~d~~~v~~~~~~~--g~ 76 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PG-IEPVCVDLGDWEATERALGSV--GP 76 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TT-CEEEECCTTCHHHHHHHHTTC--CC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEEeCCCHHHHHHHHHHh--CC
Confidence 6889999997765 333343333 22579999999998877665432 22 67778888751 12221 67
Q ss_pred ccEEEecC
Q 021550 182 ADSIFLDL 189 (311)
Q Consensus 182 ~D~V~~d~ 189 (311)
+|++|.+.
T Consensus 77 iDilVnnA 84 (244)
T d1pr9a_ 77 VDLLVNNA 84 (244)
T ss_dssp CCEEEECC
T ss_pred ceEEEecc
Confidence 99988643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.80 E-value=0.35 Score=39.07 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=64.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhC-CCcEEEE-EeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-C----CCC--c
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVA-PTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-G----FPD--E 177 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~-vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~----~~~--~ 177 (311)
-.|++||..|.+ +.++.++++.+. .+.+|+. ...+++.++.+.+.+...|. ++.++..|+.+. . +.. .
T Consensus 4 L~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence 358899988855 444555554442 2466765 46677778888888877664 378899998751 1 100 0
Q ss_pred CCCCccEEEecCCC------------------------hhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~------------------------~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..|+++.+... +....+.+.+.|+.+|.+++.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 11578988864321 113566777778887777665
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.79 E-value=0.65 Score=37.26 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=49.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.|+++|..|.++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+.. ...+.++..|+.+.. . .. ...
T Consensus 5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5788888887665 333333332 2358999999999988877776542 334888999997511 0 00 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|++|.+.
T Consensus 81 G~iDiLVnnA 90 (251)
T d1zk4a1 81 GPVSTLVNNA 90 (251)
T ss_dssp SSCCEEEECC
T ss_pred CCceEEEecc
Confidence 5789888643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=89.58 E-value=0.42 Score=33.24 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=52.5
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFD--FHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.|.+||.+|.|. |.--+..+... +++|+.++ .+++....+. . ..+.+.........+ ..+++
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~~~~~~~~~~----~----~~i~~~~~~~~~~dl-----~~~~l 75 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTFIPQFTVWAN----E----GMLTLVEGPFDETLL-----DSCWL 75 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSCCHHHHHHHT----T----TSCEEEESSCCGGGG-----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCChHHHHHHh----c----CCceeeccCCCHHHh-----CCCcE
Confidence 478999999997 44333333332 46776665 4444433322 1 236666665543222 45788
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+....++. .-..+....++.|.++-.
T Consensus 76 v~~at~d~~-~n~~i~~~a~~~~ilVNv 102 (113)
T d1pjqa1 76 AIAATDDDT-VNQRVSDAAESRRIFCNV 102 (113)
T ss_dssp EEECCSCHH-HHHHHHHHHHHTTCEEEE
T ss_pred EeecCCCHH-HHHHHHHHHHHcCCEEEe
Confidence 887766553 445677777788887743
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=89.53 E-value=1.3 Score=32.70 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=62.9
Q ss_pred EEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|.-+|||. |.. -+.+.... +...++.+|.+++..+...+. .+... ...|..+ .+ + ..+|+|++.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~---~~~~~----~~~~~~~-ll-~---~~iD~V~I~ 69 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATR---YRVSA----TCTDYRD-VL-Q---YGVDAVMIH 69 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHH---TTCCC----CCSSTTG-GG-G---GCCSEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHh---ccccc----ccccHHH-hc-c---cccceeccc
Confidence 688899986 422 23333332 466788899998877666553 33321 1233332 12 2 468999887
Q ss_pred CCChhhHHHHHHhcccCCcEEEEe---cCCHHHHHHHHHHHhh
Q 021550 189 LPQPWLAIPSAKKMLKQDGILCSF---SPCIEQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~~~l~~~~~~LkpgG~lv~~---~~~~~~~~~~~~~l~~ 228 (311)
.|.. .-.+.+..+|+.|=.+++- +.+.++..++.+..++
T Consensus 70 tp~~-~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 70 AATD-VHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp SCGG-GHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred cccc-ccccccccccccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 6643 3556677777777666663 4455677777777665
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.42 E-value=0.067 Score=43.68 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=36.7
Q ss_pred EEEEecCCC--CCCCCcCCCCccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++.+|..+ ..+++ +++|+||.|+|-. ...+.++.++|+|+|.++++..
T Consensus 6 ~~~~~D~le~l~~l~d---~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPD---DSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEEECCHHHHHHTSCT---TCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEechHHHHHhhCcC---CCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 356677764 34666 8999999999821 2457789999999999998643
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.33 Score=31.52 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=39.6
Q ss_pred HHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
+.+....+++.+||..|... |.+++++++.+ ..+|+++--+++..+.+++
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 34455678899999987644 77889999997 4799999999988888765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.22 E-value=2.8 Score=30.09 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=57.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH-HHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAR-EDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|-.+|+|. |....+.+...+-..++..+|++++.++... .............+...|... + ...|+|++.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~--~-----~~adivvit 74 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD--L-----KGSDVVIVA 74 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG--G-----TTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH--h-----cCCCEEEEe
Confidence 677889887 5554443433334568999999987655322 222211222224444444321 2 347998874
Q ss_pred CCCh-------h-------hHHHHHHh---cccCCcEEEEecCCHHHHHHHHH
Q 021550 189 LPQP-------W-------LAIPSAKK---MLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 189 ~~~~-------~-------~~l~~~~~---~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
...+ . ..+..+.+ -..|++.+++++-..+.+.....
T Consensus 75 ag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~ 127 (140)
T d1a5za1 75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFL 127 (140)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHH
T ss_pred cccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHH
Confidence 3211 1 12333322 33589998887766665554443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=89.18 E-value=2.9 Score=30.26 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+|..+|+|. |....+.+...+-...++.+|++++..+--..-+.. ........+..+|..+ + ...|+|+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~--~-----~~adivv 77 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD--C-----KDADLVV 77 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG--G-----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH--h-----ccccEEE
Confidence 46899999887 654444444433346899999998765422211211 1111123444555432 2 4579988
Q ss_pred ecCCChh--------------hHHHHHHh---cccCCcEEEEecCCHHHHHHHH
Q 021550 187 LDLPQPW--------------LAIPSAKK---MLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 187 ~d~~~~~--------------~~l~~~~~---~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
+....+. ..+..+.+ .-.|.+.+++.+...+-+....
T Consensus 78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~ 131 (146)
T d1ez4a1 78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT 131 (146)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH
Confidence 7433211 12333322 2358898887776555444443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.65 E-value=0.6 Score=37.56 Aligned_cols=101 Identities=13% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+++|..|+++| ++..+++.+ ..+.+|+..|.+++.++.+.+.+ + ....++..|+.+.. ... ...
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 5788888887665 444444333 23579999999998887766543 2 23667778887510 000 011
Q ss_pred CCccEEEecCC------------Chh------------hHHHHHHhccc-CCcEEEEecC
Q 021550 180 GLADSIFLDLP------------QPW------------LAIPSAKKMLK-QDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~------------~~~------------~~l~~~~~~Lk-pgG~lv~~~~ 214 (311)
+..|+++.+.. +.| ...+.+.+.|+ .+|.++..+.
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS 138 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS 138 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence 57899886532 011 23556666665 5788887543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.55 E-value=0.3 Score=37.49 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=60.9
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------G-VS--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g-~~--------~~v~~~~~D~~~ 171 (311)
.+|-.+|+|. |. ++..++.. +..|+.+|.+++.++.+.+++... + .. +++.. ..+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-- 78 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK---GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSY-- 78 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT---TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSS--
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccc--
Confidence 4688999997 44 23333333 579999999999988877664321 1 10 01111 1111
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCH
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+ ...|+|+-..+... +++.++-+.++++-+|...++..
T Consensus 79 ~~~-----~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 79 GDF-----GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp TTG-----GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred ccc-----cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 112 46899998777653 57888888999999888665544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.53 E-value=0.37 Score=38.97 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHh-cCCCCcEEEEEecCCCCC-CCC------c
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFH-EQRAASAREDFER-TGVSSFVTVGVRDIQGQG-FPD------E 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~-~~~------~ 177 (311)
.|+++|..|+++|. +..+++.+ ..+.+|+..+.+ ++.++.+.+.+.. .+. .+.++..|+.+.. +.. .
T Consensus 3 ~gK~alITGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGSTSGI-GLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV--KVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTS--CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHH
Confidence 57788887877654 33333332 125799999986 5667666655543 332 3888889987511 100 0
Q ss_pred CCCCccEEEecC
Q 021550 178 FSGLADSIFLDL 189 (311)
Q Consensus 178 ~~~~~D~V~~d~ 189 (311)
..+..|++|.+.
T Consensus 80 ~~G~iDiLVnnA 91 (260)
T d1x1ta1 80 QMGRIDILVNNA 91 (260)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCcEEEeec
Confidence 115789988653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.62 Score=37.40 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=47.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.|+++|.-|+++| ++..+++.+ ..+.+|+..|.+++.++.+.+.. .+ ..++.+|+.+.. . .. ...
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~-~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PG-AVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TT-EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEccCCCHHHHHHHHHHHHHhc
Confidence 5789999998765 333333333 23589999999998877665432 23 778889987511 0 00 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|++|.+.
T Consensus 78 g~iDilVnnA 87 (250)
T d1ydea1 78 GRLDCVVNNA 87 (250)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEecc
Confidence 5689988643
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.37 E-value=0.5 Score=40.30 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=39.1
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVA------PTGHVYTFDFHEQRAASAREDFE 154 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~ 154 (311)
..++..+.-.|+|+|+|+|.++..+++.+. ....++.+|.|+...+.-++++.
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 334444456899999999999998877653 23568999999987766665543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=88.02 E-value=0.6 Score=37.62 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+++|..|.++|. +..+++.+ ..+.+|+.+|.+++.++.+.+. . ...+.+...|+.+.. ... ...
T Consensus 4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 4 SGKTVIITGGARGL-GAEAARQAVAAGARVVLADVLDEEGAATARE---L--GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCSEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---T--GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---h--CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 57899999988763 33333322 1257999999999877655433 2 245888999987511 100 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|++|.+.
T Consensus 78 g~iDilVnnA 87 (254)
T d1hdca_ 78 GSVDGLVNNA 87 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCccEEEecC
Confidence 5789888643
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=87.75 E-value=4 Score=30.07 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHhcC-CCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTG-VSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
.+..+|-.+|+|. |....+.+...+-..++..+|++++..+ .|.......- ..........|.. .+ ...|
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~--~~-----~~ad 90 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS--VT-----ANSK 90 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG--GG-----TTCS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh--hc-----cccc
Confidence 3456999999987 7666665555455578999999987653 2222211111 1111222223322 12 4578
Q ss_pred EEEecCCCh-------h-------hHHHHHHhcc---cCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLPQP-------W-------LAIPSAKKML---KQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~~~-------~-------~~l~~~~~~L---kpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+|++....+ . ..++.+.+.+ .|+|.+++.+...+-+..+....
T Consensus 91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~ 150 (160)
T d1i0za1 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKL 150 (160)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHH
Confidence 888643211 1 1233332222 68899888777666555554443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.61 E-value=1 Score=34.70 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAR 150 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 150 (311)
++|..+|+|- |..++.++... +.+|+++|.+++.++...
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence 3688899997 55433333332 579999999998877654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.46 E-value=1.3 Score=35.15 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=46.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-----CCCCcCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-----GFPDEFSGL 181 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~~~~ 181 (311)
.|+++|..|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.. .+ +..+..|+.+. .+... +.
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~-~~~~~~Dv~~~~~v~~~~~~~--g~ 74 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PG-IEPVCVDLGDWDATEKALGGI--GP 74 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TT-CEEEECCTTCHHHHHHHHTTC--CC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEEeCCCHHHHHHHHHHc--CC
Confidence 5789999997765 333333332 23589999999988776655432 22 66778888751 12221 67
Q ss_pred ccEEEecC
Q 021550 182 ADSIFLDL 189 (311)
Q Consensus 182 ~D~V~~d~ 189 (311)
.|++|.+.
T Consensus 75 iDilVnnA 82 (242)
T d1cyda_ 75 VDLLVNNA 82 (242)
T ss_dssp CSEEEECC
T ss_pred CeEEEECC
Confidence 99988653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=87.27 E-value=1.2 Score=37.66 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=54.4
Q ss_pred CEEEEEcccccHHHHHHH-------HH--------hCCCcEEEEEeCCHHHHHHHHHHHHhcCC-CC--cEEEEEecCCC
Q 021550 110 CLVLESGTGSGSLTTSLA-------RA--------VAPTGHVYTFDFHEQRAASAREDFERTGV-SS--FVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la-------~~--------~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~~--~v~~~~~D~~~ 171 (311)
-+|.|+||.+|..++.+. +. -.|.-+|+.-|.-..=....=+.+....- .. -+..+.+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 468999999998874322 11 01334566666644322222122211111 11 13334566666
Q ss_pred CCCCCcCCCCccEEEecC--------C---------------Ch---------------hhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDEFSGLADSIFLDL--------P---------------QP---------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~--------~---------------~~---------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
.-+|. ++.|++++.. | .+ ..+|..=.+-|+|||++++.
T Consensus 133 rLfP~---~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 133 RLFPR---NTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCT---TCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hcCCC---CceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 66777 7888887411 1 00 13566667889999999873
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.97 E-value=4.4 Score=29.76 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=59.3
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-C-CCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-V-SSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~-~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.+|..+|+|. |....+++...+-...+..+|++++..+.-..-+.... . .........|... + ...|+|+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~--~-----~~adivv 92 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNV--S-----ANSKLVI 92 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGG--G-----TTEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhh--h-----ccccEEE
Confidence 5799999987 55555544443334589999999876542222222211 1 1223333334321 2 4578887
Q ss_pred ecCCCh--------------hhHHHHHHhcc---cCCcEEEEecCCHHHHHHHHH
Q 021550 187 LDLPQP--------------WLAIPSAKKML---KQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 187 ~d~~~~--------------~~~l~~~~~~L---kpgG~lv~~~~~~~~~~~~~~ 224 (311)
+....+ ...+..+.+.+ .|+|.+++.+...+-+..+..
T Consensus 93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~~ 147 (159)
T d2ldxa1 93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVVW 147 (159)
T ss_dssp ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHHH
T ss_pred EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHHH
Confidence 643221 12344444433 589999887776665555543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.61 E-value=1.2 Score=35.83 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHE-QRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~-~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.|+++|..|+++|. +..+++.+ ..+.+|+..+.+. +.++.+.+.+...+. .+.++..|+.+.. +.. ..
T Consensus 6 ~gK~alITGas~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 6 EGKVVVITGSSTGL-GKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888888877653 33343333 1257899999874 567777776666553 3778889997511 110 01
Q ss_pred CCCccEEEecC
Q 021550 179 SGLADSIFLDL 189 (311)
Q Consensus 179 ~~~~D~V~~d~ 189 (311)
.+..|++|.+.
T Consensus 83 ~G~iDiLVnnA 93 (261)
T d1geea_ 83 FGKLDVMINNA 93 (261)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEeeccc
Confidence 15789988653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=86.43 E-value=2.9 Score=34.53 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
-+.+|++||..|.. |.++.++++.+ ..+..|+++..+....+..+.............+..+|+.+. .+.... ..+
T Consensus 7 ~~~~gk~VlVTG~s-GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~ 84 (342)
T d1y1pa1 7 VLPEGSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI-KGA 84 (342)
T ss_dssp SSCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT-TTC
T ss_pred CCCCcCEEEEECCC-CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhc-ccc
Confidence 46789999998854 88887777654 224689998888776666555544444444455677888752 222211 457
Q ss_pred cEEEe
Q 021550 183 DSIFL 187 (311)
Q Consensus 183 D~V~~ 187 (311)
|.|+.
T Consensus 85 ~~v~~ 89 (342)
T d1y1pa1 85 AGVAH 89 (342)
T ss_dssp SEEEE
T ss_pred hhhhh
Confidence 88774
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.85 E-value=1.9 Score=35.75 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......++.-+|||. +..-+..+..+.+-.+|..++.+++..+...+.+...+.. + .. +.. ...
T Consensus 116 a~~~la~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~--~--~~-~~~-~a~---- 185 (320)
T d1omoa_ 116 AAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGIS--A--SV-QPA-EEA---- 185 (320)
T ss_dssp HHHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCC--E--EE-CCH-HHH----
T ss_pred HHHHhccCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCc--c--cc-chh-hhh----
Confidence 44566655667899999997 5544444555556789999999999887777777655432 2 21 111 111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|+|+...+....++. .+.|+||-.+...+...
T Consensus 186 -~~aDiV~taT~s~~P~~~--~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 186 -SRCDVLVTTTPSRKPVVK--AEWVEEGTHINAIGADG 220 (320)
T ss_dssp -TSSSEEEECCCCSSCCBC--GGGCCTTCEEEECSCCS
T ss_pred -ccccEEEEeccCcccccc--hhhcCCCCeEeecCCcc
Confidence 357999876654443443 24689988888765543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.85 E-value=1.4 Score=34.81 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+++|..|++.|. +..+++.+ ..+.+|+..+.+.+.++...+ ..+ ..+.+...|+.+.. +.. ...
T Consensus 4 ~gK~alItGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGI-GRAALDLFAREGASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57889998987653 33333333 236899999999987655443 333 44788889987511 100 011
Q ss_pred CCccEEEecCC----C--------h------------hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLP----Q--------P------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~----~--------~------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|++|.+.. . . ..+.+.+.+.++.++.+++.+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 56898886432 0 1 1345666778888887776544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.77 E-value=0.17 Score=41.83 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=38.6
Q ss_pred EEEEEecCCC--CCCCCcCCCCccEEEecCCCh-------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP-------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~-------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
=.+.++|..+ ..+++ +++|+|+.|+|-. ...+..+.++|+++|.+++...
T Consensus 13 ~~l~~GD~le~l~~l~~---~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~ 83 (320)
T d1booa_ 13 GSMYIGDSLELLESFPE---ESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 83 (320)
T ss_dssp EEEEESCHHHHGGGSCS---SCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEehhHHHHHhhCcc---CCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence 4678888774 34565 8999999999821 2468899999999999988644
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.71 E-value=1.8 Score=34.35 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=53.6
Q ss_pred CCCEEEEEcccccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------c
Q 021550 108 PGCLVLESGTGSGS---LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------E 177 (311)
Q Consensus 108 ~g~~VLdiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~ 177 (311)
.|+.+|.-|+++|. ++..+++. +.+|+..|.+++.++...+.+...+. ++....+|+.+.. ... .
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~---G~~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence 47888988988764 33444443 68999999999999988888876653 3888899997611 000 0
Q ss_pred CCCCccEEEecC
Q 021550 178 FSGLADSIFLDL 189 (311)
Q Consensus 178 ~~~~~D~V~~d~ 189 (311)
..+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 125789988654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.36 E-value=1.3 Score=35.32 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC--cC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
-.|+++|.-|+++| ++..+++.+ ..+.+|+..|.+++..+.+++. + ..++..|+.+.. +.. ..
T Consensus 3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~----~----~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEAI----G----GAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH----T----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence 36889999997665 333333333 2358999999998876655432 2 346678887511 100 01
Q ss_pred CCCccEEEecCC------------------------ChhhHHHHHHhcccC--CcEEEEecC
Q 021550 179 SGLADSIFLDLP------------------------QPWLAIPSAKKMLKQ--DGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~------------------------~~~~~l~~~~~~Lkp--gG~lv~~~~ 214 (311)
.+..|++|.+.. .++...+.+.+.|+. +|.++..+.
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS 135 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS 135 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccc
Confidence 157898886432 112345566677654 678876543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=85.28 E-value=5 Score=28.82 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=57.4
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|..+|+|. |....+.+...+-..++..+|++++..+--..-+.. ........+...+-. ..+ ...|+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~-----~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EIC-----RDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGG-----TTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHh-----hCCcEEEE
Confidence 4788899876 655544444433446899999999875422111221 111222344333222 112 34699886
Q ss_pred cCCCh-------h-------hHHHHHHhc---ccCCcEEEEecCCHHHHHHHHHHH
Q 021550 188 DLPQP-------W-------LAIPSAKKM---LKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 188 d~~~~-------~-------~~l~~~~~~---LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
....+ . ..+..+.+. ..|+|.+++.+-..+-+.......
T Consensus 76 taG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~ 131 (143)
T d1llda1 76 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKL 131 (143)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred ecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHH
Confidence 43321 1 223333222 358898887766655555544433
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.00 E-value=0.97 Score=34.65 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CCCC--------------cEEEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GVSS--------------FVTVGVR 167 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~~~--------------~v~~~~~ 167 (311)
.+|..+|+|. |.--..++.. .+..|+.+|.+++.++.+++++... +... ++.+. .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 4899999998 5433333333 2589999999999998888765431 2110 12111 1
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
|.. ..+ ...|+|+-..++.. +++.++.+.++++.+|..-++... ..++...+
T Consensus 82 d~~-~a~-----~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~-i~~la~~~ 137 (192)
T d1f0ya2 82 DAA-SVV-----HSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ-ITSIANAT 137 (192)
T ss_dssp CHH-HHT-----TSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC-HHHHHTTS
T ss_pred hhH-hhh-----cccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc-cchhhhhc
Confidence 211 111 45799988777643 578888889999988886555433 33333333
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.93 E-value=1.5 Score=34.91 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+.+|.-|+++|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+........+.++..|+.+.. +.. ...
T Consensus 2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 47889999977653 33344333 2358999999999988888776654433345888999997511 100 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 5789988654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.54 E-value=1.6 Score=35.18 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.|+++|.-|+++|. +..+++.+ ..+.+|+..|.+++.++.+.+.+...+.. ..+....+|+.+.. +.. ..
T Consensus 3 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888988887753 33333332 23579999999999999888888776643 35889999987511 100 01
Q ss_pred CCCccEEEec
Q 021550 179 SGLADSIFLD 188 (311)
Q Consensus 179 ~~~~D~V~~d 188 (311)
.+..|+++.+
T Consensus 82 ~G~iDilVnn 91 (274)
T d1xhla_ 82 FGKIDILVNN 91 (274)
T ss_dssp HSCCCEEEEC
T ss_pred cCCceEEEee
Confidence 1578998864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.49 E-value=2.2 Score=34.06 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+++|.-|.+.| ++..+++++ ..+++|+..+.+++.++.+.+.+...+. .+.++..|+.+.. ... ...
T Consensus 10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5788888776654 444444443 3358999999999999988888877653 3788899997511 000 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|+++.+.
T Consensus 87 g~iDilvnnA 96 (255)
T d1fmca_ 87 GKVDILVNNA 96 (255)
T ss_dssp SSCCEEEECC
T ss_pred CCCCEeeeCC
Confidence 5789888643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.47 E-value=1.5 Score=32.69 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=63.6
Q ss_pred HHHhcC-CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++..+ .-.|++|+.+|-|. |.-....++.+ +++|+.+|++|...-.|. ..|. .+. ... ...
T Consensus 14 ~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~----~dG~----~v~--~~~-~a~--- 77 (163)
T d1li4a1 14 IKRATDVMIAGKVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAA----MEGY----EVT--TMD-EAC--- 77 (163)
T ss_dssp HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTC----EEC--CHH-HHT---
T ss_pred HHHHhCceecCCEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhh----cCce----Eee--ehh-hhh---
Confidence 444444 35789999999997 66666666765 589999999986433332 1232 222 121 112
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|+++........+=.+-.+.||+|.+++-...+.
T Consensus 78 --~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 78 --QEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp --TTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred --hhccEEEecCCCccchhHHHHHhccCCeEEEEecccc
Confidence 3468888776665545567788899999998655443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=84.46 E-value=1.6 Score=34.76 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=44.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.|+.+|..|.+.| ++..+++.+ ..+.+|+..|.++.. .+.+.++..+ ..+.+...|+.+.. ... ...
T Consensus 4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 4 KDKLAVITGGANG-IGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4778888887654 333344333 235799999987642 2333344444 34888899997511 100 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+..|++|.+.
T Consensus 79 G~iDilVnnA 88 (247)
T d2ew8a1 79 GRCDILVNNA 88 (247)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 5789988653
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=84.37 E-value=0.9 Score=36.09 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=60.0
Q ss_pred EEEEcccccHHHHHHHHHhCC-Cc-------EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--
Q 021550 112 VLESGTGSGSLTTSLARAVAP-TG-------HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD-- 176 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~-~~-------~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~-- 176 (311)
||.-|+++| ++..+++.+.. +. .|+.++.+++.++.+.+.+...+. .+.++.+|+.+.. + ..
T Consensus 4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC--EEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHH
Confidence 566677665 34334333311 22 488999999999888887776553 3788889997611 0 00
Q ss_pred cCCCCccEEEecCC------------------------ChhhHHHHHHhccc--CCcEEEEecC
Q 021550 177 EFSGLADSIFLDLP------------------------QPWLAIPSAKKMLK--QDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~------------------------~~~~~l~~~~~~Lk--pgG~lv~~~~ 214 (311)
...+..|+++.+.. .+....+.+.+.|+ .+|.++..+.
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS 144 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS 144 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEec
Confidence 01257999886532 11234556666664 5788887644
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.74 E-value=2.1 Score=31.08 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=55.2
Q ss_pred CEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|..+|+ |. |....+++...+-...+..+|+++... .|... ............... ...++.. ...|+|++
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~Dl-~~~~~~~~~~~~~~~---~~~~~~~-~~aDivVi 74 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADL-SHIETRATVKGYLGP---EQLPDCL-KGCDVVVI 74 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHH-TTSSSSCEEEEEESG---GGHHHHH-TTCSEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHHH-hhhhhhcCCCeEEcC---CChHHHh-CCCCEEEE
Confidence 36889996 87 766666655433347899999986432 22221 111111111111111 1111100 35799886
Q ss_pred cCCCh------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 188 DLPQP------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 188 d~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
-...+ ....+.+.+. .|.+.+++.+...+.+..+..
T Consensus 75 tag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~ 128 (144)
T d1mlda1 75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITA 128 (144)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHH
T ss_pred CCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHH
Confidence 43211 1233444444 689999988777765554443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=83.24 E-value=2.2 Score=31.21 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=61.2
Q ss_pred EEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|--||+|. |. ++..|++. +..|+++|.+++..+.+++. +. .. ..+.. + .. ...|+|++.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~---G~~V~~~d~~~~~~~~~~~~----~~----~~-~~~~~-e-~~----~~~d~ii~~ 63 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKA---GYSLVVSDRNPEAIADVIAA----GA----ET-ASTAK-A-IA----EQCDVIITM 63 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHT----TC----EE-CSSHH-H-HH----HHCSEEEEC
T ss_pred EEEEEehhHHHHHHHHHHHHC---CCeEEEEeCCcchhHHHHHh----hh----hh-cccHH-H-HH----hCCCeEEEE
Confidence 567788887 44 44445443 57899999999887766542 21 11 11111 1 11 357999999
Q ss_pred CCChhhHH------HHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 189 LPQPWLAI------PSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~~~l------~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
.|++...- ..+...+++|..++-.+.. .+...++.+.+.+
T Consensus 64 v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~ 110 (161)
T d1vpda2 64 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA 110 (161)
T ss_dssp CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 98776432 2356677888777755443 3555666666665
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.28 E-value=2.2 Score=34.28 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=52.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCC-----CCC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-----FPD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~-----~~~--~~ 178 (311)
.|+++|..|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. ..+....+|+.+.. +.. ..
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4778888887665 333333332 12579999999999999988888776543 35888999987511 100 01
Q ss_pred CCCccEEEec
Q 021550 179 SGLADSIFLD 188 (311)
Q Consensus 179 ~~~~D~V~~d 188 (311)
.+..|++|.+
T Consensus 83 ~g~iDilvnn 92 (272)
T d1xkqa_ 83 FGKIDVLVNN 92 (272)
T ss_dssp HSCCCEEEEC
T ss_pred hCCceEEEeC
Confidence 1578998864
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.81 E-value=1.9 Score=34.26 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCCEEEEEccccc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cC
Q 021550 108 PGCLVLESGTGSG-SLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G-~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~ 178 (311)
.|+++|..|++++ +++..+++++ ..+.+|+..+.+++..+.+.+.....+ . ..+...|+.+.. ... ..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--G-ALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--C-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--c-ccccccccCCHHHHHHHHHHHHHh
Confidence 5789999997542 2333333322 125789999998877777666555443 2 567788887510 000 01
Q ss_pred CCCccEEEecCCC----------------hh------------hHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ----------------PW------------LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------------~~------------~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+..|+++.+... .| ...+.+.+.++.+|.++..+.
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS 147 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEee
Confidence 1568988754320 01 234456677888898887543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.72 E-value=2.5 Score=33.76 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCC-C----CC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQG-F----PD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~-~----~~--~~ 178 (311)
.|+.+|..|+++|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. ..+.+...|+.+.. . .. ..
T Consensus 4 ~gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888877653 33333332 23589999999999999888887766543 35888999997511 1 00 01
Q ss_pred CCCccEEEec
Q 021550 179 SGLADSIFLD 188 (311)
Q Consensus 179 ~~~~D~V~~d 188 (311)
.+..|++|.+
T Consensus 83 ~g~iDilvnn 92 (264)
T d1spxa_ 83 FGKLDILVNN 92 (264)
T ss_dssp HSCCCEEEEC
T ss_pred hCCCCEeecc
Confidence 1578988764
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=81.26 E-value=7.9 Score=28.21 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=26.3
Q ss_pred EEEEEcccc-cHHHHH--HHHHhC--CCcEEEEEeCCHHHHHHHHHH
Q 021550 111 LVLESGTGS-GSLTTS--LARAVA--PTGHVYTFDFHEQRAASARED 152 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~--la~~~~--~~~~v~~vD~~~~~~~~a~~~ 152 (311)
+|..+|+|+ |..... ++.... +...+..+|++++..+.+...
T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~ 48 (162)
T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDF 48 (162)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHH
Confidence 688899997 432221 233321 136899999999987755543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=81.20 E-value=1.1 Score=34.12 Aligned_cols=77 Identities=14% Similarity=0.039 Sum_probs=47.3
Q ss_pred CCCCEEEEEcccccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCc
Q 021550 107 VPGCLVLESGTGSGS---LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLA 182 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~ 182 (311)
-.|++||..|++.|. ++..+++. +.+|+.++.+++.++.+.+.+..... +.+...|..+. .+.. .-+..
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~-~~~~i 93 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGE---GAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAE-AVKGA 93 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHH-HTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhh---ccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHH-HhcCc
Confidence 468899999976643 22233333 58999999999988877776655321 33455565431 1111 11468
Q ss_pred cEEEecCC
Q 021550 183 DSIFLDLP 190 (311)
Q Consensus 183 D~V~~d~~ 190 (311)
|++|.+.+
T Consensus 94 Dilin~Ag 101 (191)
T d1luaa1 94 HFVFTAGA 101 (191)
T ss_dssp SEEEECCC
T ss_pred CeeeecCc
Confidence 99887643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.07 E-value=0.35 Score=35.79 Aligned_cols=92 Identities=13% Similarity=-0.034 Sum_probs=51.3
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE--EEEecCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT--VGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~--~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++|+.+|+|. |......+... +..|+.++.+++..+.. ...+...... ....+.. .. .+.+|+||
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~--~~~~D~ii 68 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDP----DF--LATSDLLL 68 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCH----HH--HHTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhh----ccccCCccccccccccchh----hh--hcccceEE
Confidence 4799999997 55444433332 46899998876422110 0011111011 1111110 00 14689999
Q ss_pred ecCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 187 LDLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 187 ~d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+..+.. ..+++.+.+.+.++..++...
T Consensus 69 i~vka~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 69 VTLKAWQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ECSCGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred EeecccchHHHHHhhccccCcccEEeecc
Confidence 876643 467888888888888887653
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=80.98 E-value=2.1 Score=32.02 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=62.1
Q ss_pred CEEEEEcccc-cHH-HHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
-+|.-+|||. |.. -+...+.......+++ +|.+++..+...+. .+.. ....|.. +.+.. ..+|+|+
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~---~~~~----~~~~~~~-ell~~---~~id~v~ 72 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM---VGNP----AVFDSYE-ELLES---GLVDAVD 72 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH---HSSC----EEESCHH-HHHHS---SCCSEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc---cccc----ceeeeee-ccccc---cccceee
Confidence 3788999986 432 2333444333356775 68888776554443 3322 1223433 22333 5689998
Q ss_pred ecCCChhhHHHHHHhcccCCcEEEEecC---CHHHHHHHHHHHhh
Q 021550 187 LDLPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL 228 (311)
Q Consensus 187 ~d~~~~~~~l~~~~~~LkpgG~lv~~~~---~~~~~~~~~~~l~~ 228 (311)
+..|... -.+.+..+|+.|=.+++--| +.++..++.+..++
T Consensus 73 I~tp~~~-h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~ 116 (181)
T d1zh8a1 73 LTLPVEL-NLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 116 (181)
T ss_dssp ECCCGGG-HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 8776543 45666777777767776444 45666666666655
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=80.97 E-value=3.4 Score=30.58 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=64.3
Q ss_pred HHHhcC-CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++..+ .-.|++++.+|=|. |.-.+.-++.+ +++|+.+|++|-..- +..+ .| .++. ... ...
T Consensus 13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~al--qA~m--dG----f~v~--~~~-~a~--- 76 (163)
T d1v8ba1 13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAI--QAVM--EG----FNVV--TLD-EIV--- 76 (163)
T ss_dssp HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHH--HHHT--TT----CEEC--CHH-HHT---
T ss_pred HHHHhCceecCCEEEEecccccchhHHHHHHhC--CCEEEEEecCchhhH--HHHh--cC----CccC--chh-Hcc---
Confidence 445545 36789999999997 66666666665 589999999995433 3222 23 2222 222 112
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|++|.......-+-.+-.+.||.|.+++-...+.
T Consensus 77 --~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 77 --DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp --TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred --ccCcEEEEcCCCCccccHHHHHHhhCCeEEEeccccc
Confidence 3469988766655544566678899999998665544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.88 E-value=3.5 Score=32.66 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCCC
Q 021550 109 GCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSG 180 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~~ 180 (311)
|+.+|.-|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+. .+.++..|+.+.. ... ...+
T Consensus 2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5566777866543 44444333 2357999999999999988888877654 3888999987511 000 0126
Q ss_pred CccEEEecC
Q 021550 181 LADSIFLDL 189 (311)
Q Consensus 181 ~~D~V~~d~ 189 (311)
..|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 789988653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.43 E-value=2.8 Score=33.07 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=59.1
Q ss_pred EEEEEcccccHHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCCCC
Q 021550 111 LVLESGTGSGSLTTSLARAVA-PTGHVYTFDF-HEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSGL 181 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~-~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~~~ 181 (311)
.||.-|+++ +++..+++.+. .+.+|+..+. +++.++.+.+.+...+. ++.+...|+.+.. ... ...+.
T Consensus 3 V~lITGas~-GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 3 VVVVTGASR-GIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp EEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred EEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 455555554 45555555442 2467877665 66777877777766653 4778889987511 100 01167
Q ss_pred ccEEEecCCC------------------------hhhHHHHHHhcc--cCCcEEEEecC
Q 021550 182 ADSIFLDLPQ------------------------PWLAIPSAKKML--KQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~------------------------~~~~l~~~~~~L--kpgG~lv~~~~ 214 (311)
.|+++.+... +....+.+.+.| +.+|.++..+.
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS 138 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS 138 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 8998864320 112445566665 46788887655
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=80.36 E-value=0.48 Score=35.67 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcc
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD 53 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~ 53 (311)
.+++||+|++.. ...||.|..|+.|...++.
T Consensus 78 ~~~~GdrV~~~~--------~~~cg~~~~c~~g~~~~c~ 108 (171)
T d1h2ba1 78 GLEKGDPVILHP--------AVTDGTCLACRAGEDMHCE 108 (171)
T ss_dssp SCCTTCEEEECS--------CBCCSCSHHHHTTCGGGCT
T ss_pred cCCCCCEEEEcC--------ccCCCCccccccccccccc
Confidence 589999999976 3458888888888755543
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