Citrus Sinensis ID: 021554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccEEEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHcHEEEEccccccccccccccccccHHccccccHHHcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEcccccccHHHHHHHccccHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccEEEEEEccccEEEEEccccccccccccccccccccccccccccEEccccccccHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlmccggrvlaglypakkplipynyhggnsrfrrlnsnwrcrasepesssfapsidaesadknaagfciiegpetvQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAElgiskeeqdnelpsfpsfipflpplsaaNLKVYYATCFSLIAGVILFGgllapslelklgiggtsyADFIQsvhlpmqlsqvdpivasfsgGAVGVISALMIVEVNNVKQQEQKRCKyclgtgylacarcsntgslvliepvstvnggdqplsapktercsncsgsgkvmcptclctgmamasehdpridpfd
Flexible Loop (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASepesssfapsiDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVStvnggdqplsapKTERCSNCSGSGKVMCPTCLCTGMamasehdpridpfd
Low Complexity Region (SEG)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRasepesssfapsIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNElpsfpsfipflpplsAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Disordered region (IsUnstruct)
**MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC**********************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK*****************FPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTV********************SGKVMCPTCLCTGM**************
Disordered Region (DISOPRED)
****CGGRVLAGLYPAKKPLIPYNY*G**SRF********************************AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQ*************************IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIV**********KRCKYCLGTGYLACARCSNTGSLVL******************TERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDP**
Disordered Region (DISEMBL)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRC*************IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLS************SGKVMCPTCLCTGMAMASEHDPRIDPFD
Disordered Region (DISPRO)
MLMCCGGRVLAGLYPAKKPLIPYN***GNSR**R*****************************AAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE************PSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVN****PLSA*KTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRI****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
224114611	316	predicted protein [Populus trichocarpa]	0.990	0.974	0.785	1e-142
359490129	307	PREDICTED: uncharacterized protein LOC10	0.974	0.986	0.801	1e-141
449451844	326	PREDICTED: uncharacterized protein LOC10	0.977	0.932	0.768	1e-138
225454961	312	PREDICTED: uncharacterized protein LOC10	0.990	0.987	0.817	1e-138
255539933	313	conserved hypothetical protein [Ricinus	0.971	0.964	0.798	1e-137
356544872	301	PREDICTED: uncharacterized protein LOC10	0.958	0.990	0.798	1e-137
297793723	307	hypothetical protein ARALYDRAFT_496333 [	0.967	0.980	0.801	1e-137
345841545	311	orange protein [Nicotiana tabacum]	0.990	0.990	0.772	1e-136
363807516	293	uncharacterized protein LOC100780032 [Gl	0.906	0.962	0.822	1e-135
359302816	317	orange protein [Nicotiana tabacum]	0.990	0.971	0.757	1e-134

>gi|224114611|ref|XP_002332323.1| predicted protein [Populus trichocarpa] gi|222832570|gb|EEE71047.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/317 (78%), Positives = 275/317 (86%), Gaps = 9/317 (2%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNY---HGGNSRF-----RRLNSNWRCRASEPESSSFAPS 54
           M C  RVL    P K PL  ++        SRF      +LN  W+  ASE +SSSFA S
Sbjct: 1   MACLSRVLTVSCPVK-PLYGFSACSSQNWRSRFADASNHKLNLRWKAMASESDSSSFAAS 59

Query: 55  IDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRI 114
           +D++S D+NA GFCIIEGPETVQDFAKMEL EI DNIRSRRNKIFLHMEEVRRLRIQQRI
Sbjct: 60  VDSDSPDRNATGFCIIEGPETVQDFAKMELLEIQDNIRSRRNKIFLHMEEVRRLRIQQRI 119

Query: 115 KNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLE 174
           KNAELGIS E ++NELP+FPSFIPFLPPLSA NL++YYATCFSLIAG+I+FGGLLAP+LE
Sbjct: 120 KNAELGISNESEENELPNFPSFIPFLPPLSAENLRLYYATCFSLIAGIIIFGGLLAPALE 179

Query: 175 LKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRC 234
           LKLG+GGTSY DFI+++HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRC
Sbjct: 180 LKLGLGGTSYPDFIRTMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRC 239

Query: 235 KYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLC 294
           KYCLGTGYLACARCSNTG+LVLIEPVST++G DQPLS PKTERCSNCSGSGKVMCPTCLC
Sbjct: 240 KYCLGTGYLACARCSNTGALVLIEPVSTISGADQPLSRPKTERCSNCSGSGKVMCPTCLC 299

Query: 295 TGMAMASEHDPRIDPFD 311
           TGMAMASEHDPRIDPFD
Sbjct: 300 TGMAMASEHDPRIDPFD 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490129|ref|XP_002280857.2| PREDICTED: uncharacterized protein LOC100261377 [Vitis vinifera] gi|297744972|emb|CBI38564.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 275/313 (87%), Gaps = 10/313 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFR--RLNSN--WRCRASEPESSSFAPSIDAE 58
           M   GR+LA  Y    P   Y Y   NSRF   +L S+  WR   S PE+S+FAPS+D+E
Sbjct: 1   MVYTGRILAVSY---SPTTSYRY--SNSRFHQGKLKSDLKWRAMVSGPEASAFAPSVDSE 55

Query: 59  SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
           SADKN  GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAE
Sbjct: 56  SADKNDTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 115

Query: 119 LGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLG 178
           LGI KE Q+NEL +FPSFIPFLPPLS+ANLK+YYA CFSL+AG+I+FGGLLAP+LELKLG
Sbjct: 116 LGILKE-QENELQNFPSFIPFLPPLSSANLKLYYAACFSLLAGIIIFGGLLAPTLELKLG 174

Query: 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCL 238
           +GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVIS+LMIVE+NNVKQQE+KRCKYCL
Sbjct: 175 LGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISSLMIVEINNVKQQEKKRCKYCL 234

Query: 239 GTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMA 298
           GTGYLACARCS++G+LVL EPVSTVNGG QPLS PKTERCSNCSG+GKVMCPTCLCTGM 
Sbjct: 235 GTGYLACARCSSSGALVLSEPVSTVNGGRQPLSPPKTERCSNCSGAGKVMCPTCLCTGME 294

Query: 299 MASEHDPRIDPFD 311
           MASEHDPRIDPFD
Sbjct: 295 MASEHDPRIDPFD 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451844|ref|XP_004143670.1| PREDICTED: uncharacterized protein LOC101219412 [Cucumis sativus] gi|449488619|ref|XP_004158115.1| PREDICTED: uncharacterized protein LOC101232024 [Cucumis sativus]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/324 (76%), Positives = 277/324 (85%), Gaps = 20/324 (6%)

Query: 8   RVLAGLYPAKKPLIPYNYHGGN-------SRF------RRLNSNWRCRA-------SEPE 47
           RVL   YP    + P+++           SRF      ++L+S WR R+       S   
Sbjct: 3   RVLVASYPINHLIRPHSFRIDYCWSTCFISRFNSGKERQKLSSRWRWRSMASDSTDSSSS 62

Query: 48  SSSFAPSIDAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRR 107
           SSSFAPS++++ +DK +A FCIIEGPETVQDFAKMELQEI +NIRSRRNKIFLHMEEVRR
Sbjct: 63  SSSFAPSVESDPSDKTSASFCIIEGPETVQDFAKMELQEIQENIRSRRNKIFLHMEEVRR 122

Query: 108 LRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGG 167
           LRIQQRIKNAELGISKEE++NELP+FPSFIPFLPPLS+ANLK+YY TC+SLIAG+ILFGG
Sbjct: 123 LRIQQRIKNAELGISKEERENELPNFPSFIPFLPPLSSANLKLYYVTCYSLIAGIILFGG 182

Query: 168 LLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVK 227
           LLAP+LELKLG+GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVK
Sbjct: 183 LLAPTLELKLGLGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVK 242

Query: 228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287
           QQE KRCKYCLGTGYLACARCSNTG+LVLIEPVST+NG DQPLS PKTERC NCSGSGKV
Sbjct: 243 QQEHKRCKYCLGTGYLACARCSNTGALVLIEPVSTLNGEDQPLSLPKTERCQNCSGSGKV 302

Query: 288 MCPTCLCTGMAMASEHDPRIDPFD 311
           MCPTCLCTGMAMASEHDPRIDPFD
Sbjct: 303 MCPTCLCTGMAMASEHDPRIDPFD 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454961|ref|XP_002280630.1| PREDICTED: uncharacterized protein LOC100266582 [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/313 (81%), Positives = 279/313 (89%), Gaps = 5/313 (1%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYNYHGGNSRFRR--LNSN--WRCRASEPESSSFAPSIDAE 58
           M C GR+LA  Y         NY   NSRF +  L SN  WR  ASEPE+SSFA S+D++
Sbjct: 1   MVCTGRILAVSYSPTTSF-HRNYRYSNSRFLQGNLKSNLKWRSMASEPEASSFASSVDSD 59

Query: 59  SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
           S+DKN+ GFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+AE
Sbjct: 60  SSDKNSTGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAE 119

Query: 119 LGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLG 178
           LGI KEEQ+NELP+FPSFIPFLPPLS+ANLK+YYATCFSLIAG+I+FGGLLAP+LELKLG
Sbjct: 120 LGILKEEQENELPNFPSFIPFLPPLSSANLKLYYATCFSLIAGIIIFGGLLAPTLELKLG 179

Query: 179 IGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCL 238
           +GGTSY DFI+SVHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCL
Sbjct: 180 LGGTSYEDFIRSVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQENKRCKYCL 239

Query: 239 GTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMA 298
           GTGYLACARCS+TG+LVLIEPVSTVN G QPLS PKTERCSNCSG+GKVMCPTCLCTGM 
Sbjct: 240 GTGYLACARCSSTGALVLIEPVSTVNSGSQPLSPPKTERCSNCSGAGKVMCPTCLCTGME 299

Query: 299 MASEHDPRIDPFD 311
           MASEHDPRIDPFD
Sbjct: 300 MASEHDPRIDPFD 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539933|ref|XP_002511031.1| conserved hypothetical protein [Ricinus communis] gi|223550146|gb|EEF51633.1| conserved hypothetical protein [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/312 (79%), Positives = 275/312 (88%), Gaps = 10/312 (3%)

Query: 7   GRVLAGLYPAKKPL---IPYNYHGGNSRF----RRLNSNWRCRASEPESSSFAPSIDAES 59
           GR LA  YP K PL   + +N H    RF    R+L S WR  ASE ++SS +    +  
Sbjct: 5   GRALAVSYPVK-PLCLHVLHNPHHSTGRFIDVNRKLISKWRSMASELDASSPS--SSSFD 61

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DKNAAGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL
Sbjct: 62  SDKNAAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 121

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI +EEQ+NELP+FPSFIPFLPPLSAANL++YYATCFSLIAG+I+FGGLLAP+LELKLG+
Sbjct: 122 GILQEEQENELPNFPSFIPFLPPLSAANLRLYYATCFSLIAGIIIFGGLLAPALELKLGL 181

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSY DFI++VHLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 182 GGTSYEDFIRNVHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 241

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAM 299
           TGYLACARCS+TG+LVL+EPVSTV+ GDQPL  PKTERCSNCSG+GKVMCPTCLCTGMAM
Sbjct: 242 TGYLACARCSSTGALVLVEPVSTVSSGDQPLPVPKTERCSNCSGAGKVMCPTCLCTGMAM 301

Query: 300 ASEHDPRIDPFD 311
           ASEHDPRIDPFD
Sbjct: 302 ASEHDPRIDPFD 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544872|ref|XP_003540871.1| PREDICTED: uncharacterized protein LOC100780118 [Glycine max]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/312 (79%), Positives = 269/312 (86%), Gaps = 14/312 (4%)

Query: 3   MCCGGRVLAGL--YPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESA 60
           M C GR   G+  YP K      +Y     R       W   A++   SSFAPS+D+   
Sbjct: 1   MLCLGR-FGGVSHYPIKSGWSRRDYTNNRPR-------WCLMAAQESDSSFAPSLDS--- 49

Query: 61  DKNA-AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           DK A AGFCIIEGPETVQDFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIK+AEL
Sbjct: 50  DKTASAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAEL 109

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  EEQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+
Sbjct: 110 GILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGL 169

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFI+S+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQEQKRCKYCLG
Sbjct: 170 GGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLG 229

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAM 299
           TGYLACARCS+TG+LVLIEPVSTV GGD+PLS PKTERCSNCSGSGKVMCPTCLCTGMAM
Sbjct: 230 TGYLACARCSSTGALVLIEPVSTVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAM 289

Query: 300 ASEHDPRIDPFD 311
           ASEHDPRIDPFD
Sbjct: 290 ASEHDPRIDPFD 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793723|ref|XP_002864746.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata] gi|297310581|gb|EFH41005.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/307 (80%), Positives = 267/307 (86%), Gaps = 6/307 (1%)

Query: 7   GRVLAGLYPAKKPLIPYNYHGGNSRFRRLNS-NWRCRASEPESSSFAPSIDAES-ADKNA 64
           GR+L+  YP       ++ +  +S  RR  S  WR  A +PESS     +D+ES ADK A
Sbjct: 5   GRILSVSYPPDPYTPRFSQYKLSSSLRRTRSLRWRFTALDPESSP----LDSESSADKFA 60

Query: 65  AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKE 124
           AGFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  E
Sbjct: 61  AGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINE 120

Query: 125 EQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSY 184
           EQ++ELP+FPSFIPFLPPLSAANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSY
Sbjct: 121 EQEHELPNFPSFIPFLPPLSAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSY 180

Query: 185 ADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLA 244
           ADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTGYLA
Sbjct: 181 ADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLA 240

Query: 245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHD 304
           CARCS+TG+LVL EPVS V G +  LS PKTERCSNCSG+GKVMCPTCLCTGMAMASEHD
Sbjct: 241 CARCSSTGALVLTEPVSAVAGVNHSLSPPKTERCSNCSGAGKVMCPTCLCTGMAMASEHD 300

Query: 305 PRIDPFD 311
           PRIDPFD
Sbjct: 301 PRIDPFD 307

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345841545|gb|AEO17754.1| orange protein [Nicotiana tabacum]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/312 (77%), Positives = 268/312 (85%), Gaps = 4/312 (1%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 119
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQR+K+AEL
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEVRRLRIQQRLKSAEL 119

Query: 120 GISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 179
           GI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+LELKLG+
Sbjct: 120 GILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTLELKLGL 179

Query: 180 GGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLG 239
           GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KRCKYCLG
Sbjct: 180 GGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKRCKYCLG 239

Query: 240 TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAM 299
           TGYLACARCS+TG+LVLIEPVST NG D+PLS P TERC NCSG+GKVMCPTCLCTGMAM
Sbjct: 240 TGYLACARCSSTGALVLIEPVSTFNGADKPLSPPNTERCPNCSGAGKVMCPTCLCTGMAM 299

Query: 300 ASEHDPRIDPFD 311
           ASEHDPRIDPFD
Sbjct: 300 ASEHDPRIDPFD 311

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807516|ref|NP_001241887.1| uncharacterized protein LOC100780032 [Glycine max] gi|255639096|gb|ACU19848.1| unknown [Glycine max]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 259/293 (88%), Gaps = 11/293 (3%)

Query: 21  IPYNYHGGNSRFRRLNS-NWRCRASEPESSSFAPSIDAESADKNA-AGFCIIEGPETVQD 78
           + Y +     R   +N   WR  A E      +PS+D+   DK A AGFCIIEGPETVQD
Sbjct: 10  VSYGWSWNRRRDNTINRPRWRLMAQE------SPSLDS---DKTATAGFCIIEGPETVQD 60

Query: 79  FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIP 138
           FAKMELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGI  EEQ+NELP+FPSFIP
Sbjct: 61  FAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGILSEEQENELPNFPSFIP 120

Query: 139 FLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLS 198
           FLPPL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+GGTSYADFI+SVHLPMQLS
Sbjct: 121 FLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESVHLPMQLS 180

Query: 199 QVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIE 258
           QVDPIVASFSGGAVGVISALM+VE+NNVKQQ QKRCKYCLGTGYLACARCS+TG+LVLIE
Sbjct: 181 QVDPIVASFSGGAVGVISALMVVEINNVKQQGQKRCKYCLGTGYLACARCSSTGALVLIE 240

Query: 259 PVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 311
           PVSTV GGD+PLS PKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Sbjct: 241 PVSTVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359302816|gb|AEV23056.1| orange protein [Nicotiana tabacum]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/318 (75%), Positives = 268/318 (84%), Gaps = 10/318 (3%)

Query: 3   MCCGGRVLAGLYPAKKPLIPYN---YHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES 59
           M C GR+L  L  +  P         H  N R    N  WR  AS+ ++S+F  S D+ES
Sbjct: 1   MVCSGRILC-LSCSTTPFCSSTSRYLHRRNLRNNTNNIKWRSMASDADASAFTTSFDSES 59

Query: 60  ADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEE------VRRLRIQQR 113
           +DK A GFCIIEGPETV+DFAKMELQEI DNIRSRRNKIFLHMEE      VRRLRIQQR
Sbjct: 60  SDKTAPGFCIIEGPETVEDFAKMELQEIRDNIRSRRNKIFLHMEEACFSPYVRRLRIQQR 119

Query: 114 IKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 173
           +K+AELGI  +EQ+NELP+FPSFIPFLPPL++ANLK YYATCFSLIAG++LFGGLLAP+L
Sbjct: 120 LKSAELGILTDEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIMLFGGLLAPTL 179

Query: 174 ELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKR 233
           ELKLG+GGTSYADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VE+NNVKQQE KR
Sbjct: 180 ELKLGLGGTSYADFIQSMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEHKR 239

Query: 234 CKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL 293
           CKYCLGTGYLACARCS+TG+LVLIEPVST NG D+PLS P TERC NCSG+GKVMCPTCL
Sbjct: 240 CKYCLGTGYLACARCSSTGALVLIEPVSTFNGADKPLSPPNTERCPNCSGAGKVMCPTCL 299

Query: 294 CTGMAMASEHDPRIDPFD 311
           CTGMAMASEHDPRIDPFD
Sbjct: 300 CTGMAMASEHDPRIDPFD 317

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2151556	307	AT5G61670 "AT5G61670" [Arabido	0.967	0.980	0.736	3.5e-114
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.813	0.803	0.633	3.1e-83
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.315	0.636	0.295	7.9e-06

TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 226/307 (73%), Positives = 245/307 (79%)

Query:     7 GRVLAGLYPAKKPLIPYNYHGGNSRFRR-LNSNWRCRXXXXXXXXXXXXIDAES-ADKNA 64
             GR+L+  YP      PY +     +    L  N R R            +D+ES ADK A
Sbjct:     5 GRILSVSYPPD----PYTWRFSQYKLSSSLGRNRRLRWRFTALDPESSSLDSESSADKFA 60

Query:    65 AGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKE 124
             +GFCIIEGPETVQDFAKM+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  E
Sbjct:    61 SGFCIIEGPETVQDFAKMQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINE 120

Query:   125 EQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSY 184
             EQ++E               AANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSY
Sbjct:   121 EQEHELPNFPSFIPFLPPLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSY 180

Query:   185 ADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLA 244
             ADFIQS+HLPMQLSQVDPIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTGYLA
Sbjct:   181 ADFIQSLHLPMQLSQVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLA 240

Query:   245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHD 304
             CARCS+TG+LVL EPVS + GG+  LS PKTERCSNCSG+GKVMCPTCLCTGMAMASEHD
Sbjct:   241 CARCSSTGALVLTEPVSAIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGMAMASEHD 300

Query:   305 PRIDPFD 311
             PRIDPFD
Sbjct:   301 PRIDPFD 307

GO:0009536 "plastid" evidence=ISS

GO:0009661 "chromoplast organization" evidence=ISS

GO:0016120 "carotene biosynthetic process" evidence=ISS

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 161/254 (63%), Positives = 191/254 (75%)

Query:    59 SADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 118
             S D     FCIIEG ETVQDF +M+LQEI DNIRSRRNKIFL MEEVRRLR+QQRIK+ +
Sbjct:    62 SGDTVPNNFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVK 121

Query:   119 -LGISKEEQDNEXXXXXXXXXXXXXXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKL 177
              +    E +  E                  LK  Y+T  +LI+G+I FGGL+AP+LELK+
Sbjct:   122 AINEDSELEATEMPEITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKV 181

Query:   178 GIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYC 237
             G+GGTSY DFI+S+HLP+QLSQVDPIVASFSGGAVGVIS LM++EVNNVKQQE+KRCKYC
Sbjct:   182 GLGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYC 241

Query:   238 LGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGM 297
             LGTGYL CARCS +G  + I+P++     +Q +    T+RC NCSG+GKVMCPTCLCTGM
Sbjct:   242 LGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVMCPTCLCTGM 301

Query:   298 AMASEHDPRIDPFD 311
               ASEHDPR DPFD
Sbjct:   302 VTASEHDPRFDPFD 315

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 34/115 (29%), Positives = 57/115 (49%)

Query:   190 SVHLPMQLSQVDP-IVASFSGG----AVGV-ISALMIVEVNNVKQQEQKR-CKYCLGTGY 242
             S   P   +++DP  V + S G    A+G+ I      +++N  ++E  + C  C GTG 
Sbjct:    36 STSYPRIKAELDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGA 95

Query:   243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGM 297
               C  C  +G+ V +E    + GG++ +S      C NC G+G + C TC  +G+
Sbjct:    96 QKCRLCVGSGN-VTVE----LGGGEKEVS-----NCINCDGAGSLTCTTCQGSGV 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       284   0.00085  115 3  11 22  0.49    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.66u 0.11s 23.77t   Elapsed:  00:00:01
  Total cpu time:  23.66u 0.11s 23.77t   Elapsed:  00:00:01
  Start:  Mon May 20 21:11:20 2013   End:  Mon May 20 21:11:21 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	4e-05

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 224 NNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSG 283
           N  K++  + C  C GTG   C  C  +G++ +      + GG++ +S     +C NC G
Sbjct: 34  NAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVE-----LGGGEKEVS-----KCINCDG 83

Query: 284 SGKVMCPTCLCTGM 297
           +G + C TC  +G+
Sbjct: 84  AGSLTCTTCQGSGI 97

Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.42
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.24
PRK14296	372	chaperone protein DnaJ; Provisional	99.14
PRK14282	369	chaperone protein DnaJ; Provisional	99.1
PRK14298	377	chaperone protein DnaJ; Provisional	99.09
PRK14278	378	chaperone protein DnaJ; Provisional	99.06
PRK14281	397	chaperone protein DnaJ; Provisional	99.02
PRK14276	380	chaperone protein DnaJ; Provisional	99.02
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.02
PRK14277	386	chaperone protein DnaJ; Provisional	99.01
PRK14286	372	chaperone protein DnaJ; Provisional	99.01
PRK14279	392	chaperone protein DnaJ; Provisional	99.01
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.0
PRK14280	376	chaperone protein DnaJ; Provisional	99.0
PRK14290	365	chaperone protein DnaJ; Provisional	98.98
PRK14301	373	chaperone protein DnaJ; Provisional	98.98
PRK10767	371	chaperone protein DnaJ; Provisional	98.98
PRK14293	374	chaperone protein DnaJ; Provisional	98.97
PRK14297	380	chaperone protein DnaJ; Provisional	98.97
PRK14285	365	chaperone protein DnaJ; Provisional	98.96
PRK14284	391	chaperone protein DnaJ; Provisional	98.96
PRK14288	369	chaperone protein DnaJ; Provisional	98.95
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.94
PRK14300	372	chaperone protein DnaJ; Provisional	98.94
PRK14287	371	chaperone protein DnaJ; Provisional	98.93
PRK14294	366	chaperone protein DnaJ; Provisional	98.93
PRK14295	389	chaperone protein DnaJ; Provisional	98.93
PRK14289	386	chaperone protein DnaJ; Provisional	98.93
PRK14283	378	chaperone protein DnaJ; Provisional	98.87
PRK14292	371	chaperone protein DnaJ; Provisional	98.87
PRK14291	382	chaperone protein DnaJ; Provisional	98.85
KOG2813	406	consensus Predicted molecular chaperone, contains	98.43
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.28
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.13
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.73
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.66
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.34
PRK14279	392	chaperone protein DnaJ; Provisional	96.9
PRK14284	391	chaperone protein DnaJ; Provisional	96.77
PRK14296	372	chaperone protein DnaJ; Provisional	96.72
PRK14300	372	chaperone protein DnaJ; Provisional	96.63
PRK14301	373	chaperone protein DnaJ; Provisional	96.61
PRK14282	369	chaperone protein DnaJ; Provisional	96.6
PRK10767	371	chaperone protein DnaJ; Provisional	96.59
PRK14295	389	chaperone protein DnaJ; Provisional	96.58
PRK14286	372	chaperone protein DnaJ; Provisional	96.58
PRK14278	378	chaperone protein DnaJ; Provisional	96.56
PRK14298	377	chaperone protein DnaJ; Provisional	96.54
PRK14297	380	chaperone protein DnaJ; Provisional	96.53
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.51
PRK14285	365	chaperone protein DnaJ; Provisional	96.51
PRK14276	380	chaperone protein DnaJ; Provisional	96.49
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.48
PRK14288	369	chaperone protein DnaJ; Provisional	96.47
PRK14280	376	chaperone protein DnaJ; Provisional	96.45
PRK14287	371	chaperone protein DnaJ; Provisional	96.38
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.38
PRK14289	386	chaperone protein DnaJ; Provisional	96.37
PRK14294	366	chaperone protein DnaJ; Provisional	96.32
PRK14277	386	chaperone protein DnaJ; Provisional	96.32
PRK14281	397	chaperone protein DnaJ; Provisional	96.25
KOG2813	406	consensus Predicted molecular chaperone, contains	96.22
PRK14290	365	chaperone protein DnaJ; Provisional	96.19
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.19
PRK14291	382	chaperone protein DnaJ; Provisional	96.04
PRK14293	374	chaperone protein DnaJ; Provisional	96.04
PRK14283	378	chaperone protein DnaJ; Provisional	95.88
PRK14292	371	chaperone protein DnaJ; Provisional	95.82
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	95.68
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.4
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.3
PLN03165	111	chaperone protein dnaJ-related; Provisional	94.06
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	88.26
PRK03564	309	formate dehydrogenase accessory protein FdhE; Prov	85.36
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	81.92
TIGR00595	505	priA primosomal protein N'. All proteins in this f	80.44
COG1198	730	PriA Primosomal protein N' (replication factor Y)	80.24

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.5e-13  Score=134.74  Aligned_cols=70  Identities=23%  Similarity=0.646  Sum_probs=59.7

Q ss_pred             eeEeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCC
Q 021554          224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLC  294 (311)
Q Consensus       224 nnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~G  294 (311)
                      +++++.+...|+.|+|+|+      .+|+.|+|+|++...+++    |     .++.+++|++|+|+|++   +|++|+|
T Consensus       135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~----g-----~~~~~~~C~~C~G~G~~i~~pC~~C~G  205 (371)
T COG0484         135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT----G-----FFSFQQTCPTCNGTGKIIKDPCGKCKG  205 (371)
T ss_pred             eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee----e-----EEEEEEECCCCccceeECCCCCCCCCC
Confidence            7788899999999999986      699999999999876543    2     34678999999999998   8999999


Q ss_pred             eeEEecee
Q 021554          295 TGMAMASE  302 (311)
Q Consensus       295 tG~v~a~E  302 (311)
                      .|.+.+.+
T Consensus       206 ~G~v~~~~  213 (371)
T COG0484         206 KGRVKKKK  213 (371)
T ss_pred             CCeEeeee
Confidence            99977543

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.24  E-value=8.3e-12  Score=104.59  Aligned_cols=77  Identities=27%  Similarity=0.667  Sum_probs=62.5

Q ss_pred             eeeeEEEEeeeE-eecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCC
Q 021554          215 ISALMIVEVNNV-KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL  293 (311)
Q Consensus       215 isal~vvEinnV-k~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~  293 (311)
                      |..+|+..+++. +.+....|..|+|+|..+|..|+|+|.+....  .   +     .++.+++|+.|.|+|+..|+.|+
T Consensus        24 ~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~---g-----~~q~~~~C~~C~G~Gk~~C~~C~   93 (111)
T PLN03165         24 IPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--G---G-----GEKEVSKCINCDGAGSLTCTTCQ   93 (111)
T ss_pred             CcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--C---C-----cEEEEEECCCCCCcceeeCCCCC
Confidence            456666666665 57778899999999999999999999987532  1   1     23567899999999999999999


Q ss_pred             CeeEEece
Q 021554          294 CTGMAMAS  301 (311)
Q Consensus       294 GtG~v~a~  301 (311)
                      |+|.+.+.
T Consensus        94 G~G~~~~~  101 (111)
T PLN03165         94 GSGIQPRY  101 (111)
T ss_pred             CCEEEeee
Confidence            99998764

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=2.7e-11  Score=118.12  Aligned_cols=97  Identities=23%  Similarity=0.513  Sum_probs=72.5

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....+.   
T Consensus       124 di~~~l~ltlee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~---  184 (372)
T PRK14296        124 SVSLDIYLTFKE----LLFGVDK------------IIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNM---  184 (372)
T ss_pred             CeEEEeeccHHH----hhCCeeE------------EEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEec---
Confidence            455666666666    6666643            666678889999999996      579999999998776543   


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                          +++.++...+|+.|.|+|++   .|+.|+|.|.+... +-...|+|
T Consensus       185 ----g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  230 (372)
T PRK14296        185 ----GFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPK  230 (372)
T ss_pred             ----cceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECC
Confidence                23445667899999999998   79999999987653 44444544

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=5.2e-11  Score=115.76  Aligned_cols=98  Identities=22%  Similarity=0.521  Sum_probs=75.1

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+.+++.|++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....++. 
T Consensus       126 ~di~~~l~~slee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-  188 (369)
T PRK14282        126 EDIRYEIEVTLSD----LINGAEI------------PVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSF-  188 (369)
T ss_pred             CCeEEEEEEEHHH----hcCCeEE------------EEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEcc-
Confidence            3566777777777    7777744            666778889999999996      5899999999987765542 


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       +|     .++...+|+.|+|+|++   .|++|+|.|.+... .-+..|+|
T Consensus       189 -~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  233 (369)
T PRK14282        189 -FG-----VFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA  233 (369)
T ss_pred             -Cc-----ceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence             34     24457899999999987   79999999988763 44445544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=7.2e-11  Score=115.38  Aligned_cols=97  Identities=25%  Similarity=0.526  Sum_probs=73.7

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..+            ++...+...|..|+|+|.      .+|+.|+|+|.+....+.  .
T Consensus       116 di~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~  177 (377)
T PRK14298        116 DLRYDLYITLEE----AAFGVRK------------DIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRST--P  177 (377)
T ss_pred             CEEEEEEEEHHH----hhCCeEE------------EEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEec--C
Confidence            455666666666    6777644            666778889999999996      689999999998765543  2


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      .|     .++...+|+.|.|+|++   .|+.|+|.|.+... +-+..|.|
T Consensus       178 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ipp  222 (377)
T PRK14298        178 LG-----QFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPA  222 (377)
T ss_pred             ce-----eEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCC
Confidence            22     34678899999999987   89999999998753 44555555

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=8e-11  Score=114.98  Aligned_cols=98  Identities=24%  Similarity=0.503  Sum_probs=73.6

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++.+.|++.|    .|.|..+            +++..+...|..|+|+|.      .+|..|+|+|.+....+.  
T Consensus       113 ~d~~~~l~vtLee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--  174 (378)
T PRK14278        113 SDSLLRMRLDLEE----CATGVTK------------QVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRS--  174 (378)
T ss_pred             CCeEEEEEEEHHH----hcCCeEE------------EEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEec--
Confidence            3456677777777    7777644            666678889999999996      589999999998765432  


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      .+|     .++...+|+.|+|+|++   +|+.|+|.|.+... .-+..|+|
T Consensus       175 ~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  220 (378)
T PRK14278        175 FLG-----QVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPA  220 (378)
T ss_pred             cce-----eEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECC
Confidence            233     23457799999999987   79999999998763 34445544

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=1.6e-10  Score=113.55  Aligned_cols=97  Identities=24%  Similarity=0.543  Sum_probs=72.8

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccccC
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN  264 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c~  264 (311)
                      .+++.+.|++.|    .|.|..+            +++..+...|..|+|+|.     ..|..|+|+|.++...+.  .+
T Consensus       138 di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~--~~  199 (397)
T PRK14281        138 DLKIRLKLTLEE----IAKGVEK------------TLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKT--MF  199 (397)
T ss_pred             CEEEEEEeEHHH----HhCCeEE------------EEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEec--cc
Confidence            345555666666    6666643            667778889999999996     579999999998765543  12


Q ss_pred             CCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          265 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       265 G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      |     .++...+|+.|.|+|++   +|+.|+|.|.+... +.+..|+|
T Consensus       200 g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  243 (397)
T PRK14281        200 G-----QFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPA  243 (397)
T ss_pred             c-----eEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCC
Confidence            3     23457799999999987   89999999999764 55666665

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=1.9e-10  Score=112.39  Aligned_cols=97  Identities=23%  Similarity=0.512  Sum_probs=71.8

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....+.  .
T Consensus       121 di~~~l~vtLee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~  182 (380)
T PRK14276        121 DLQYRVNLDFEE----AIFGKEK------------EVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQT--P  182 (380)
T ss_pred             CEEEEEEEEHHH----hcCCeEE------------EEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEec--C
Confidence            455666666666    6777643            667778899999999996      579999999998765443  2


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      +|     .++.+.+|+.|.|+|++   +|+.|+|.|.+... .-+..|+|
T Consensus       183 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  227 (380)
T PRK14276        183 LG-----MMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPA  227 (380)
T ss_pred             Cc-----eEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCC
Confidence            33     23457899999999987   79999999997653 33444444

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.02  E-value=1.9e-10  Score=110.70  Aligned_cols=98  Identities=22%  Similarity=0.504  Sum_probs=74.4

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|..|+|+|.+......  
T Consensus       117 ~d~~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--  178 (354)
T TIGR02349       117 EDLRYDLELTFEE----AVFGVEK------------EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGT--  178 (354)
T ss_pred             CCeEEEEEEEHHH----HhCCeeE------------EEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEec--
Confidence            3567777888887    7888754            666778889999999995      579999999998765543  


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      .+|     .++.+.+|+.|.|+|+.   +|+.|+|.|.+... ..+..|+|
T Consensus       179 ~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  224 (354)
T TIGR02349       179 PFG-----FFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPA  224 (354)
T ss_pred             cCC-----ceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECC
Confidence            233     23457899999999997   79999999998763 33344433

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=1.9e-10  Score=112.61  Aligned_cols=97  Identities=22%  Similarity=0.501  Sum_probs=72.9

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++.+.+++.|    .|.|..+            +++..+...|..|+|+|.      .+|..|+|+|.+....+..  
T Consensus       130 di~~~l~vtLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--  191 (386)
T PRK14277        130 DIRYDLELTFEE----AAFGTEK------------EIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP--  191 (386)
T ss_pred             CEEEEEEEEHHH----HhCCeEE------------EEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEecc--
Confidence            456666777777    7777744            666778889999999995      5799999999987655442  


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      +|     .++...+|+.|.|+|++   .|+.|+|.|.+... +....|+|
T Consensus       192 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  236 (386)
T PRK14277        192 FG-----RIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPA  236 (386)
T ss_pred             Cc-----eEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCC
Confidence            33     23455799999999998   79999999998653 33455554

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=1.7e-10  Score=112.55  Aligned_cols=93  Identities=24%  Similarity=0.536  Sum_probs=72.8

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      .+|..|+|+|.+....     
T Consensus       125 di~~~l~vtLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-----  183 (372)
T PRK14286        125 DLRYNLEVSLED----AALGREY------------KIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ-----  183 (372)
T ss_pred             CeeEEEEEEHHH----HhCCeeE------------EEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe-----
Confidence            466677777777    7778754            666778889999999996      6899999999986542     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp  309 (311)
                       |     .++...+|+.|.|+|++   .|+.|+|.|.+.. .+-+..|+|
T Consensus       184 -G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  227 (372)
T PRK14286        184 -G-----FFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP  227 (372)
T ss_pred             -c-----eEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence             2     22467899999999987   8999999999886 345555555

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=2e-10  Score=112.87  Aligned_cols=93  Identities=25%  Similarity=0.587  Sum_probs=69.6

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....     
T Consensus       148 di~~~l~ltLee----~~~G~~~------------~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----  206 (392)
T PRK14279        148 DLETETTLDFVE----AAKGVTM------------PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ-----  206 (392)
T ss_pred             CeEEEEEEEHHH----HhCCeEE------------EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe-----
Confidence            345555566655    6666543            667778889999999996      5799999999987542     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |     .++.+.+|+.|.|+|++   .|+.|+|.|.+... +....|+|
T Consensus       207 -g-----~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~  250 (392)
T PRK14279        207 -G-----AFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPP  250 (392)
T ss_pred             -c-----ceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCC
Confidence             2     12456899999999998   89999999998763 44555554

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.00  E-value=2.3e-10  Score=113.77  Aligned_cols=98  Identities=21%  Similarity=0.528  Sum_probs=73.4

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      ..+.+++.+++.|    .|.|..+            +++..+...|..|+|+|.     .+|..|+|+|.+......   
T Consensus       124 ~di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~---  184 (421)
T PTZ00037        124 EDIVSHLKVTLEQ----IYNGAMR------------KLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQM---  184 (421)
T ss_pred             CCEEEEeeeeHHH----HhCCCce------------EEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEee---
Confidence            3456667777777    7777754            566678889999999996     589999999987654433   


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |   ++.++.+.+|+.|+|+|++     +|++|+|.|.+... +-+..|+|
T Consensus       185 -g---~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~  232 (421)
T PTZ00037        185 -G---SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDK  232 (421)
T ss_pred             -c---ceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCC
Confidence             2   2445677899999999987     69999999998764 34444444

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=2.6e-10  Score=111.28  Aligned_cols=97  Identities=22%  Similarity=0.563  Sum_probs=71.6

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+.+.+.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|..|+|+|.+....+.  .
T Consensus       118 di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~  179 (376)
T PRK14280        118 DLQYTMTLTFEE----AVFGKEK------------EIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNT--P  179 (376)
T ss_pred             CEEEEEEEEHHH----HhCCcee------------EEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeec--C
Confidence            455666666666    6777644            677778889999999995      579999999998765443  2


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      +|     .++.+.+|+.|+|+|++   .|+.|+|.|.+... +.+..|+|
T Consensus       180 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~  224 (376)
T PRK14280        180 FG-----RVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPA  224 (376)
T ss_pred             Cc-----eEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCC
Confidence            23     23457899999999987   79999999998653 33444444

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.98  E-value=3.6e-10  Score=109.78  Aligned_cols=89  Identities=26%  Similarity=0.641  Sum_probs=69.1

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccccC
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN  264 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c~  264 (311)
                      .+++.+.|++.|    .|.|..+            +++..+...|..|+|+|.     ..|+.|+|+|.+.....    +
T Consensus       124 di~~~l~lsLee----~~~G~~~------------~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~----~  183 (365)
T PRK14290        124 DIYTNLDISLED----AYYGTEK------------RIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG----Q  183 (365)
T ss_pred             CEEEEEEecHHH----hcCCEEE------------EEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEec----c
Confidence            455666677776    7777744            677778889999999996     58999999998866542    2


Q ss_pred             CCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece
Q 021554          265 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS  301 (311)
Q Consensus       265 G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~  301 (311)
                      |   .+.++...+|+.|.|.|++   .|+.|+|.|.+...
T Consensus       184 g---~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  220 (365)
T PRK14290        184 G---FFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVN  220 (365)
T ss_pred             C---eEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEe
Confidence            2   2334556899999999987   89999999998763

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.98  E-value=2.5e-10  Score=111.32  Aligned_cols=94  Identities=24%  Similarity=0.546  Sum_probs=73.4

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++.+.|++.|    .|.|..+            +++..+...|..|+|+|.      ..|+.|+|+|.+....    
T Consensus       118 ~di~~~l~vtLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----  177 (373)
T PRK14301        118 SDLRYNLTVSFRQ----AAKGDEV------------TLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----  177 (373)
T ss_pred             CCEEEEEeccHHH----HhCCceE------------EEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----
Confidence            4567777788877    8888854            666678889999999996      5799999999986532    


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp  309 (311)
                        |     .++...+|+.|+|+|++   .|+.|+|.|.+.. .+.+..|+|
T Consensus       178 --G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  221 (373)
T PRK14301        178 --G-----FFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA  221 (373)
T ss_pred             --e-----eEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence              2     13458999999999997   8999999999876 345555554

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.98  E-value=3.6e-10  Score=109.74  Aligned_cols=94  Identities=20%  Similarity=0.517  Sum_probs=72.9

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|+.|+|+|.+....    
T Consensus       116 ~di~~~l~vsLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----  175 (371)
T PRK10767        116 ADLRYNMEITLEE----AVRGVTK------------EIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----  175 (371)
T ss_pred             CCeEEEEEeehHH----hhCCeeE------------EEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----
Confidence            4567777888887    7888754            666778889999999996      4899999999886532    


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp  309 (311)
                        |     .++...+|+.|+|+|+.   .|+.|+|.|.+.. .+-+..|+|
T Consensus       176 --g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  219 (371)
T PRK10767        176 --G-----FFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPA  219 (371)
T ss_pred             --c-----eEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCC
Confidence              2     12456799999999998   8999999999876 334555554

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.97  E-value=2.9e-10  Score=110.68  Aligned_cols=97  Identities=22%  Similarity=0.545  Sum_probs=73.3

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+.+++.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|..|+|+|.+....+.  .
T Consensus       118 di~~~l~vsLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~  179 (374)
T PRK14293        118 DLRYDLKLDFRE----AIFGGEK------------EIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRT--P  179 (374)
T ss_pred             CeEEEEEeeHHH----HhCCceE------------EEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEec--C
Confidence            455666677776    7777743            666778889999999996      579999999998765443  1


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEeceee-CCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASEH-DPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~Eh-dprIdp  309 (311)
                      +|     .++...+|+.|.|.|++   .|+.|.|.|.+...+. +..|.|
T Consensus       180 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp  224 (374)
T PRK14293        180 FG-----SFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA  224 (374)
T ss_pred             cc-----eEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence            23     23446899999999998   8999999999877544 556655

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.97  E-value=4.9e-10  Score=109.38  Aligned_cols=89  Identities=27%  Similarity=0.567  Sum_probs=69.6

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....+.  
T Consensus       122 ~di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--  183 (380)
T PRK14297        122 ADIEYTINLTFEE----AVFGVEK------------EISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNT--  183 (380)
T ss_pred             CCEEEEEEEEHHH----hcCCeEE------------EEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEc--
Confidence            3566777777777    7777744            666778889999999996      579999999998765443  


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA  300 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a  300 (311)
                      .+|     .++.+.+|+.|.|+|++   +|+.|+|.|.+..
T Consensus       184 ~~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  219 (380)
T PRK14297        184 PLG-----SFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRK  219 (380)
T ss_pred             CCc-----eeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEe
Confidence            233     33567899999999987   8999999997654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=3.3e-10  Score=110.23  Aligned_cols=94  Identities=24%  Similarity=0.516  Sum_probs=71.3

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      +.+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|..|+|+|.+...     
T Consensus       120 ~di~~~l~vtlee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----  178 (365)
T PRK14285        120 QDLTYQIEISLED----AYLGYKN------------NINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG-----  178 (365)
T ss_pred             CCEEEEEEEEHHH----hhCCeEE------------EEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec-----
Confidence            3456666677766    6676643            667778889999999995      579999999988641     


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       .|     .++.+.+|+.|.|+|++   .|+.|+|.|.+... +.+..|+|
T Consensus       179 -~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  223 (365)
T PRK14285        179 -GG-----FFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPA  223 (365)
T ss_pred             -Cc-----eeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECC
Confidence             23     23568899999999987   89999999998753 44555555

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=3.2e-10  Score=111.16  Aligned_cols=93  Identities=26%  Similarity=0.512  Sum_probs=69.0

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      ..|+.|+|+|.+....     
T Consensus       133 d~~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-----  191 (391)
T PRK14284        133 SKKVHITLSFEE----AAKGVEK------------ELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR-----  191 (391)
T ss_pred             CeEEEEEEEHHH----HhCCeeE------------EEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe-----
Confidence            345555666665    6666643            666778889999999996      5799999999987532     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |     .++...+|+.|+|+|++   +|+.|+|.|.+... +-+..|+|
T Consensus       192 -G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  235 (391)
T PRK14284        192 -G-----FFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPA  235 (391)
T ss_pred             -c-----eEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECC
Confidence             2     13467899999999987   89999999998653 44455554

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=4.7e-10  Score=109.30  Aligned_cols=94  Identities=27%  Similarity=0.523  Sum_probs=71.0

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      ..+.+++.+++.|    .|.|..+            ++++++...|..|+|+|.     .+|..|+|+|.+....     
T Consensus       114 ~di~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~-----  172 (369)
T PRK14288        114 PDYLQTIELSFKE----AVFGCKK------------TIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ-----  172 (369)
T ss_pred             CCeeEeccccHHH----HhCCeEE------------EEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe-----
Confidence            3456667777777    7777754            666677889999999996     5799999999986532     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |     .++..++|+.|.|+|++   .|+.|+|.|.+... .-+..|.|
T Consensus       173 -g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~  216 (369)
T PRK14288        173 -G-----FMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPE  216 (369)
T ss_pred             -c-----eEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCC
Confidence             2     12456799999999987   89999999998763 33444444

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.94  E-value=7.1e-10  Score=83.93  Aligned_cols=56  Identities=30%  Similarity=0.746  Sum_probs=43.3

Q ss_pred             cccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee----eCCCCCCee
Q 021554          234 CKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLCTG  296 (311)
Q Consensus       234 C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv----~CptC~GtG  296 (311)
                      |+.|+|+|.      .+|+.|+|+|++....+.  .+     +.++...+|+.|+|+|++    +|++|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~~-----~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQT--PG-----GVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEES--SS-----TTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeC--CC-----eEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            889999997      689999999999876542  22     356778999999999998    599999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=5.9e-10  Score=108.66  Aligned_cols=94  Identities=21%  Similarity=0.528  Sum_probs=71.7

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++++.+++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....    
T Consensus       119 ~di~~~l~~sLee----~~~G~~k------------~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~----  178 (372)
T PRK14300        119 SDLKYNLTINLEE----AFHGIEK------------NISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ----  178 (372)
T ss_pred             CCeeEEEEEEHHH----HhCCceE------------EEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee----
Confidence            4667777778777    7778754            666678889999999995      6899999999987531    


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                        |     .++...+|+.|.|+|++   +|++|+|.|.+... +-+..|+|
T Consensus       179 --g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  222 (372)
T PRK14300        179 --G-----FFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPA  222 (372)
T ss_pred             --c-----eEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECC
Confidence              2     12356799999999988   89999999998653 33444443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.93  E-value=6.8e-10  Score=108.27  Aligned_cols=89  Identities=24%  Similarity=0.561  Sum_probs=69.1

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      +.+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      .+|+.|+|+|.+....+.  
T Consensus       112 ~d~~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--  173 (371)
T PRK14287        112 ADLQYTMTLEFKE----AVFGKET------------EIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT--  173 (371)
T ss_pred             CCEEEEEEEEHHH----hcCCeEE------------EEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEec--
Confidence            3556667777777    7777644            677778889999999995      579999999998765544  


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA  300 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a  300 (311)
                      .+|     .++...+|+.|.|+|++   .|+.|.|.|.+..
T Consensus       174 ~~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  209 (371)
T PRK14287        174 PFG-----RVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRK  209 (371)
T ss_pred             CCc-----eEEEEEeCCCCCCCCccccccCCCCCCeeEEee
Confidence            233     23347799999999987   7999999998864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.93  E-value=6.3e-10  Score=108.13  Aligned_cols=94  Identities=24%  Similarity=0.550  Sum_probs=72.4

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      ..|+.|+|+|.+....    
T Consensus       118 ~d~~~~l~lslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----  177 (366)
T PRK14294        118 ADLRYDLTLPFLE----AAFGTEK------------EIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ----  177 (366)
T ss_pred             CCceEEEEeeHHH----hcCCeEE------------EEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe----
Confidence            4567777777777    7788754            666678889999999996      4799999999986431    


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                        |     .++.+.+|+.|.|+|+.   .|+.|+|.|.+... .-+..|+|
T Consensus       178 --G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  221 (366)
T PRK14294        178 --G-----FFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPA  221 (366)
T ss_pred             --e-----eEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCC
Confidence              2     12467899999999998   89999999998753 44445554

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.93  E-value=6.2e-10  Score=109.26  Aligned_cols=93  Identities=30%  Similarity=0.573  Sum_probs=68.9

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..            ++++..+...|..|+|+|.      ..|..|+|+|.+....     
T Consensus       141 di~~~l~lsLee----~~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----  199 (389)
T PRK14295        141 DVESEVTLSFTE----AIDGAT------------VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-----  199 (389)
T ss_pred             CEEEEEEEEHHH----HhCCce------------EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-----
Confidence            345555555555    566653            3677778899999999996      6799999999987542     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |     .++.+.+|+.|.|+|++   .|+.|.|.|.+... ..+..|+|
T Consensus       200 -g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  243 (389)
T PRK14295        200 -G-----GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA  243 (389)
T ss_pred             -c-----ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence             2     12457799999999998   79999999998763 34444544

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.93  E-value=6.6e-10  Score=108.53  Aligned_cols=97  Identities=23%  Similarity=0.518  Sum_probs=73.1

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++.+.|++.|    +|.|...            +++..+.+.|..|+|+|.      ..|+.|+|+|.+....+..  
T Consensus       129 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--  190 (386)
T PRK14289        129 DLRVKVKLNLKE----ISTGVEK------------KFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTI--  190 (386)
T ss_pred             CeEEEEEEEHHH----hhCCeEE------------EEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecc--
Confidence            456666777777    7777643            666778889999999996      6899999999987755432  


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp  309 (311)
                      +|     .++...+|+.|.|+|++   .|+.|.|.|.+... .....|+|
T Consensus       191 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  235 (386)
T PRK14289        191 LG-----TMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA  235 (386)
T ss_pred             cc-----eEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence            23     22457899999999987   89999999998764 33444443

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=1.1e-09  Score=106.82  Aligned_cols=88  Identities=23%  Similarity=0.565  Sum_probs=68.7

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++.+.+++.|    .|.|..+            +++..+...|..|+|+|.      ..|..|+|+|.+....+..  
T Consensus       121 di~~~l~vsLed----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--  182 (378)
T PRK14283        121 DIYTEVEITLEE----AASGVEK------------DIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI--  182 (378)
T ss_pred             CeEEEeeeeHHH----HhCCcce------------EEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc--
Confidence            456677777777    7777744            666667889999999986      5799999999987655442  


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA  300 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a  300 (311)
                      +|     .++...+|++|.|+|+.   .|..|+|.|.+..
T Consensus       183 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  217 (378)
T PRK14283        183 LG-----QMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRE  217 (378)
T ss_pred             Cc-----eEEEEEECCCCCccceecCCCCCCCCCceeecc
Confidence            23     22456799999999987   8999999999876

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=1.3e-09  Score=105.89  Aligned_cols=98  Identities=18%  Similarity=0.495  Sum_probs=72.8

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-------ecCCCCcccceEEeeeccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-------LACARCSNTGSLVLIEPVS  261 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-------~~C~~C~GSG~v~~~~~~s  261 (311)
                      ..+++.+.+++.|    +|.|..+            +++..+...|..|+|+|.       ..|..|+|+|.+....+. 
T Consensus       113 ~d~~~~l~~sLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~-  175 (371)
T PRK14292        113 DDLETEARITLEQ----ARAGEEV------------EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQART-  175 (371)
T ss_pred             CCeEEEEeccHHH----HcCCeEE------------EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEec-
Confidence            3566777777777    7888754            556667789999999995       579999999998765443 


Q ss_pred             ccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEecee-eCCCCCC
Q 021554          262 TVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASE-HDPRIDP  309 (311)
Q Consensus       262 ~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~E-hdprIdp  309 (311)
                       .+|     .++...+|+.|.|.|+.   .|+.|+|.|.+...+ .+..|+|
T Consensus       176 -~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~  221 (371)
T PRK14292        176 -IFG-----VVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPR  221 (371)
T ss_pred             -cCc-----eEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECC
Confidence             123     23457899999999988   899999999987532 3444443

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.85  E-value=1.6e-09  Score=105.89  Aligned_cols=93  Identities=25%  Similarity=0.610  Sum_probs=70.3

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      .+++++.|++.|    .|.|..+            +++..+...|..|+|+|.      ..|+.|+|+|.+....     
T Consensus       131 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----  189 (382)
T PRK14291        131 DIYQTVEISLEE----AYTGTTV------------SLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG-----  189 (382)
T ss_pred             CEEEEEEEEHHH----hhCCEEE------------EEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec-----
Confidence            456677777777    7777744            666678889999999995      6899999999986531     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee--eCCCCCCeeEEece-eeCCCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCTGMAMAS-EHDPRIDP  309 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~GtG~v~a~-EhdprIdp  309 (311)
                       |     .++.+.+|+.|+|+|.+  .|+.|+|.|.+... .-...|+|
T Consensus       190 -g-----~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~  232 (382)
T PRK14291        190 -G-----FFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPP  232 (382)
T ss_pred             -c-----eEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCC
Confidence             1     23467899999999976  89999999998763 33344443

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=9e-08  Score=93.23  Aligned_cols=64  Identities=33%  Similarity=0.721  Sum_probs=46.3

Q ss_pred             ceeeccccccceeecCCCCcccce--------EEee-------------ecccccCCCCCCCCCCCceeCCCCCCCceee
Q 021554          230 EQKRCKYCLGTGYLACARCSNTGS--------LVLI-------------EPVSTVNGGDQPLSAPKTERCSNCSGSGKVM  288 (311)
Q Consensus       230 ~~k~C~~C~GTG~~~C~~C~GSG~--------v~~~-------------~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~  288 (311)
                      -.+.|+.|+|.|...|..|+|+|.        ..+.             +.+..|+|       ....+|++|+|+|+.+
T Consensus       186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G-------~G~~~C~tC~grG~k~  258 (406)
T KOG2813|consen  186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG-------RGIKECHTCKGRGKKP  258 (406)
T ss_pred             hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC-------CCcccCCcccCCCCcc
Confidence            456899999999999999999993        2211             11122333       2456788888888889


Q ss_pred             CCCCCCeeEEec
Q 021554          289 CPTCLCTGMAMA  300 (311)
Q Consensus       289 CptC~GtG~v~a  300 (311)
                      |.+|.|+|.++.
T Consensus       259 C~TC~gtgsll~  270 (406)
T KOG2813|consen  259 CTTCSGTGSLLN  270 (406)
T ss_pred             cccccCccceee
Confidence            999999887753

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=4e-07  Score=88.98  Aligned_cols=91  Identities=20%  Similarity=0.446  Sum_probs=72.9

Q ss_pred             hhhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccc
Q 021554          188 IQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVST  262 (311)
Q Consensus       188 i~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~  262 (311)
                      ..++.+++.+++-|    .|.|++.            ....+....|+.|+|+|-     ..|..|.|+|......... 
T Consensus       100 g~~~~~~~~~~Le~----~y~G~s~------------kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~g-  162 (337)
T KOG0712|consen  100 GKDVVHQLKVTLEE----LYMGKSK------------KLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMG-  162 (337)
T ss_pred             CCCceEEEEEEHHH----hhcCCcc------------ceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEecc-
Confidence            66777788888887    8888654            445567789999999985     5799999999987765552 


Q ss_pred             cCCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEec
Q 021554          263 VNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMA  300 (311)
Q Consensus       263 c~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a  300 (311)
                       .|    |..+.+.+|..|.|+|..     .|+.|.|++.+..
T Consensus       163 -Pg----~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~  200 (337)
T KOG0712|consen  163 -PG----MVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVRE  200 (337)
T ss_pred             -cc----ccccceeEeccCCCccccccccccCcccccchhhhh
Confidence             22    556778999999999997     8999999998765

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.13  E-value=1.6e-06  Score=89.80  Aligned_cols=70  Identities=31%  Similarity=0.624  Sum_probs=49.5

Q ss_pred             eecccccccee-----ecCCCCcccceEEeeecc--cccCCCCCCCCCCCceeCCCCCCCcee----eCCCCCCeeEEec
Q 021554          232 KRCKYCLGTGY-----LACARCSNTGSLVLIEPV--STVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLCTGMAMA  300 (311)
Q Consensus       232 k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~--s~c~G~~g~~~~q~~~rCp~C~G~GKv----~CptC~GtG~v~a  300 (311)
                      +.|+.|+|+|+     ..|+.|+|+|.....++.  +...-.+--+....-.+|+.|.|.|++    .|+.|.|+|++++
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            58999999998     569999999998544321  000000001122335689999999998    7999999999987


Q ss_pred             e
Q 021554          301 S  301 (311)
Q Consensus       301 ~  301 (311)
                      -
T Consensus        83 c   83 (715)
T COG1107          83 C   83 (715)
T ss_pred             e
Confidence            3

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2.1e-05  Score=77.90  Aligned_cols=75  Identities=23%  Similarity=0.589  Sum_probs=49.8

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeec------ceeecccccccee-------------ecCCCCc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQ------EQKRCKYCLGTGY-------------LACARCS  249 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q------~~k~C~~C~GTG~-------------~~C~~C~  249 (311)
                      ..+.+.+.|++.+    .|+|.... |..-....+..++..      ..++|+.|+|+|.             .+|+.|+
T Consensus       116 ~Dl~~~l~isleE----a~~G~~~~-i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~  190 (371)
T COG0484         116 ADLRYNLEITLEE----AVFGVKKE-IRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN  190 (371)
T ss_pred             CceEEEEEeEhhh----hccCceee-EecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc
Confidence            3344444555554    55555432 222223445566554      6789999999994             4799999


Q ss_pred             ccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          250 NTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       250 GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      |+|.+.                   ..+|++|+|.|++
T Consensus       191 G~G~~i-------------------~~pC~~C~G~G~v  209 (371)
T COG0484         191 GTGKII-------------------KDPCGKCKGKGRV  209 (371)
T ss_pred             cceeEC-------------------CCCCCCCCCCCeE
Confidence            999884                   3479999999985

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.66  E-value=4.7e-05  Score=57.63  Aligned_cols=39  Identities=41%  Similarity=0.951  Sum_probs=27.9

Q ss_pred             CCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEe
Q 021554          245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAM  299 (311)
Q Consensus       245 C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~  299 (311)
                      |+.|+|+|....                ....+|+.|+|+|++               .|+.|+|+|++.
T Consensus         1 C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPG----------------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-ST----------------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCC----------------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            889999997621                145789999999976               599999999997

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.34  E-value=0.00015  Score=75.73  Aligned_cols=45  Identities=36%  Similarity=1.121  Sum_probs=35.8

Q ss_pred             ceeecccccccee------------------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCc
Q 021554          230 EQKRCKYCLGTGY------------------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG  285 (311)
Q Consensus       230 ~~k~C~~C~GTG~------------------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~G  285 (311)
                      ..+.|+.|+|+|.                        .+|+.|.|+|.+..                  ..+|+.|.|+|
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------------~~~c~~c~G~g   78 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------------YDTCPECGGTG   78 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------------EeecccCCCce
Confidence            3457999999984                        48999999999864                  34688999998


Q ss_pred             ee-eCCCC
Q 021554          286 KV-MCPTC  292 (311)
Q Consensus       286 Kv-~CptC  292 (311)
                      ++ .|..|
T Consensus        79 kv~~c~~c   86 (715)
T COG1107          79 KVLTCDIC   86 (715)
T ss_pred             eEEeeccc
Confidence            87 67776

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.90  E-value=0.00061  Score=67.43  Aligned_cols=43  Identities=28%  Similarity=0.678  Sum_probs=34.8

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|+|+|++..
T Consensus       173 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~  226 (392)
T PRK14279        173 PAPCTTCHGSGARPG----------------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE  226 (392)
T ss_pred             cccCCCCccccccCC----------------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence            368999999997632                124679999999975           6999999999864

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.77  E-value=0.00075  Score=66.67  Aligned_cols=43  Identities=35%  Similarity=0.834  Sum_probs=34.6

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       158 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  211 (391)
T PRK14284        158 YKSCDACSGSGANSS----------------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT  211 (391)
T ss_pred             eccCCCCcccccCCC----------------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence            468999999997521                134689999999983           7999999999763

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.72  E-value=0.001  Score=65.52  Aligned_cols=42  Identities=29%  Similarity=0.739  Sum_probs=33.9

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|+|+|.+               .|+.|.|+|++..
T Consensus       150 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~  206 (372)
T PRK14296        150 TNCSKCFGSGAESN----------------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK  206 (372)
T ss_pred             eccCCCCCCccCCC----------------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec
Confidence            68999999997531                124679999999964               6999999999863

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.63  E-value=0.0013  Score=64.53  Aligned_cols=39  Identities=31%  Similarity=0.880  Sum_probs=29.3

Q ss_pred             ceeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ....|..|+|+|.           .+|+.|+|+|.+..                   .+|+.|.|+|.+
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v  210 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-------------------NPCKKCHGMGRY  210 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-------------------CCCCCCCCceEE
Confidence            3457999999885           36888888887732                   359999998875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.61  E-value=0.0013  Score=64.71  Aligned_cols=42  Identities=33%  Similarity=0.855  Sum_probs=33.9

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       145 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  197 (373)
T PRK14301        145 VTCDDCGGSGAAPG----------------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT  197 (373)
T ss_pred             ccCCCCCCcccCCC----------------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence            68999999997632                123579999999964           6999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.60  E-value=0.0014  Score=64.32  Aligned_cols=42  Identities=29%  Similarity=0.649  Sum_probs=33.8

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|+|+|.+               .|+.|.|+|++..
T Consensus       153 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  209 (369)
T PRK14282        153 ETCPHCGGTGVEPG----------------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG  209 (369)
T ss_pred             ccCCCCCccCCCCC----------------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence            68999999997521                134679999999964               5999999999864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.59  E-value=0.0014  Score=64.10  Aligned_cols=43  Identities=30%  Similarity=0.814  Sum_probs=34.2

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|+...
T Consensus       142 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK10767        142 LVTCDTCHGSGAKPG----------------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK  195 (371)
T ss_pred             cccCCCCCCcccCCC----------------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence            368999999997531                123579999999976           4999999999864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.58  E-value=0.0015  Score=64.75  Aligned_cols=43  Identities=35%  Similarity=0.776  Sum_probs=34.5

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+           .|+.|.|+|++..
T Consensus       166 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  219 (389)
T PRK14295        166 QAPCPACSGTGAKNG----------------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD  219 (389)
T ss_pred             cccCCCCcccccCCC----------------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence            368999999997632                124679999999974           7999999999864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.58  E-value=0.0015  Score=64.20  Aligned_cols=42  Identities=31%  Similarity=0.855  Sum_probs=33.9

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       151 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  203 (372)
T PRK14286        151 ESCVDCNGSGASKG----------------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS  203 (372)
T ss_pred             ccCCCCcCCCcCCC----------------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence            68999999997521                123579999999965           6999999999864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.56  E-value=0.0016  Score=64.15  Aligned_cols=38  Identities=32%  Similarity=0.899  Sum_probs=29.8

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|.               .+|+.|+|+|.+..                   .+|+.|.|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------------DPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------------CCCCCCCCceeE
Confidence            457999999985               36999999998742                   249999999865

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.54  E-value=0.0014  Score=64.56  Aligned_cols=38  Identities=45%  Similarity=1.022  Sum_probs=28.7

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      .+.|..|+|+|.               .+|+.|+|+|.+.                   ..+|+.|.|+|.+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  210 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------------ESPCPVCSGTGKV  210 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------------CCCCCCCCCccEE
Confidence            457999999885               3688888888763                   2359999998865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.53  E-value=0.0015  Score=64.24  Aligned_cols=42  Identities=26%  Similarity=0.737  Sum_probs=33.8

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|.|+|++               .|+.|.|+|++..
T Consensus       149 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  205 (380)
T PRK14297        149 ENCETCNGTGAKPG----------------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE  205 (380)
T ss_pred             ccCCCcccccccCC----------------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence            68999999998621                124679999999854               6999999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.51  E-value=0.0015  Score=65.60  Aligned_cols=41  Identities=27%  Similarity=0.665  Sum_probs=32.8

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce---------------eeCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK---------------VMCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK---------------v~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|...         +        ...+|+.|+|+|.               ..|+.|.|+|++..
T Consensus       151 ~~C~~C~G~G~~~---------~--------~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~  206 (421)
T PTZ00037        151 VICANCEGHGGPK---------D--------AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP  206 (421)
T ss_pred             ccccccCCCCCCC---------C--------CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence            6899999999531         1        2357999999994               27999999999875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.51  E-value=0.0017  Score=63.77  Aligned_cols=38  Identities=29%  Similarity=0.953  Sum_probs=29.8

Q ss_pred             eeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|.           .+|+.|+|+|.+.                   ..+|+.|.|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence            457999999985           3799999998773                   2359999999964

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.49  E-value=0.0014  Score=64.57  Aligned_cols=43  Identities=28%  Similarity=0.679  Sum_probs=34.0

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+               .|+.|.|+|++..
T Consensus       146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  203 (380)
T PRK14276        146 EATCHTCNGSGAKPG----------------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK  203 (380)
T ss_pred             cccCCCCcCcccCCC----------------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence            368999999996521                124579999999864               5999999999864

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0026  Score=61.25  Aligned_cols=55  Identities=25%  Similarity=0.607  Sum_probs=44.2

Q ss_pred             ecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCC
Q 021554          228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL  293 (311)
Q Consensus       228 ~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~  293 (311)
                      ....-.|..|.|.+.++|..|+||=.+... +.  -.        -...+|+.|+=.|-+.|+.|.
T Consensus       226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-~~--~~--------~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE-EE--DD--------GGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCCCCcCCCcCCcceEecCCCCCceeeeee-cc--CC--------CcEEECcccCCCCceeCCccC
Confidence            344578999999999999999999988653 11  01        135799999999999999995

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.47  E-value=0.0018  Score=63.53  Aligned_cols=41  Identities=32%  Similarity=0.763  Sum_probs=33.1

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                 ...+|+.|+|+|.+           .|+.|.|+|++..
T Consensus       141 ~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  192 (369)
T PRK14288        141 SVCESCDGTGAKDK-----------------ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK  192 (369)
T ss_pred             ccCCCCCCcccCCC-----------------CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence            58999999996421                 23579999999965           5999999999863

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0019  Score=63.54  Aligned_cols=38  Identities=39%  Similarity=0.996  Sum_probs=26.0

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|.               .+|+.|+|+|.+..                   .+|+.|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v  212 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK-------------------EKCPTCHGKGKV  212 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec-------------------CCCCCCCCceEE
Confidence            456888888774               25888888887631                   248888887754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.38  E-value=0.0018  Score=63.69  Aligned_cols=42  Identities=36%  Similarity=0.808  Sum_probs=33.5

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|+|+|.+               .|+.|.|+|++..
T Consensus       139 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK14287        139 ETCGTCHGSGAKPG----------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK  195 (371)
T ss_pred             ccCCCCCCcccCCC----------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence            68999999997521                134679999999963               5999999999854

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.38  E-value=0.0023  Score=58.26  Aligned_cols=14  Identities=36%  Similarity=0.778  Sum_probs=9.3

Q ss_pred             eecCCCCcccceEE
Q 021554          242 YLACARCSNTGSLV  255 (311)
Q Consensus       242 ~~~C~~C~GSG~v~  255 (311)
                      ...|+.|+|+|.+.
T Consensus        99 ~~~C~~C~G~G~~i  112 (186)
T TIGR02642        99 SCKCPRCRGTGLIQ  112 (186)
T ss_pred             CCcCCCCCCeeEEe
Confidence            56677777777664

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.37  E-value=0.0021  Score=63.22  Aligned_cols=39  Identities=31%  Similarity=0.973  Sum_probs=27.7

Q ss_pred             ceeeccccccceee---------------cCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GTG~~---------------~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ....|+.|+|+|.+               +|+.|+|+|.+.                   ...|+.|.|+|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEE
Confidence            34578888888752               588888888663                   1358888888854

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.32  E-value=0.0025  Score=62.38  Aligned_cols=42  Identities=31%  Similarity=0.780  Sum_probs=33.9

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ..|..|+|+|....                ....+|+.|.|.|.+           .|+.|.|+|++..
T Consensus       145 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~  197 (366)
T PRK14294        145 ETCEECHGSGCEPG----------------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV  197 (366)
T ss_pred             ccCCCCCCccccCC----------------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence            68999999998632                124679999999964           6999999999863

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.32  E-value=0.0025  Score=62.91  Aligned_cols=43  Identities=28%  Similarity=0.707  Sum_probs=34.2

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+               .|+.|.|+|++..
T Consensus       155 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  212 (386)
T PRK14277        155 FEKCDVCKGSGAKPG----------------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT  212 (386)
T ss_pred             eccCCCCCCCCcCCC----------------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence            368999999997521                134679999999864               5999999999864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.003  Score=62.62  Aligned_cols=42  Identities=43%  Similarity=0.879  Sum_probs=33.5

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      ...|..|+|+|....                 ...+|+.|.|+|.+               .|+.|.|+|++..
T Consensus       163 ~~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  219 (397)
T PRK14281        163 QVPCKECNGTGSKTG-----------------ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK  219 (397)
T ss_pred             eecCCCCCCcccCCC-----------------CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC
Confidence            368999999997521                 23579999999964               5999999999864

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0028  Score=62.49  Aligned_cols=53  Identities=26%  Similarity=0.574  Sum_probs=33.6

Q ss_pred             ecCCCCcccceEEeeecccccCCCCC-------CCCC-----------CCceeCCCCCCCceeeCCCCCCeeEEe
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQ-------PLSA-----------PKTERCSNCSGSGKVMCPTCLCTGMAM  299 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g-------~~~~-----------q~~~rCp~C~G~GKv~CptC~GtG~v~  299 (311)
                      ..|..|.|.|..++.    .|+|++.       +|.-           -+...|..|+|+|+..|++|+|.|.+.
T Consensus       188 ~~ch~c~gRG~~vc~----gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~  258 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCH----GCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKP  258 (406)
T ss_pred             hhhhcccCCCceecc----CcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcc
Confidence            468888888877652    3444320       1111           123557778888888888888888764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.19  E-value=0.0034  Score=61.45  Aligned_cols=38  Identities=37%  Similarity=0.940  Sum_probs=28.1

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|+.|+|+|.               .+|+.|.|.|.+.                   ..+|+.|.|+|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence            457888888884               3688888888762                   2358888888864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.19  E-value=0.0035  Score=60.85  Aligned_cols=38  Identities=42%  Similarity=1.000  Sum_probs=28.9

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|.               .+|+.|+|+|.+..                   ..|+.|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v  212 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------------EPCSTCKGKGRV  212 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------------CCCCCCCCCcEe
Confidence            457999999884               36889998887631                   249999998865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0042  Score=61.25  Aligned_cols=41  Identities=37%  Similarity=0.857  Sum_probs=32.7

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEE
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMA  298 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v  298 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+           .|+.|.|+|.+
T Consensus       156 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        156 YVPCEACGGTGYDPG----------------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             eccCCCCccccCCCC----------------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            368999999997531                134679999999975           69999999964

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0042  Score=61.03  Aligned_cols=38  Identities=32%  Similarity=0.857  Sum_probs=27.8

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|.               .+|..|.|+|.+..                   .+|..|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE-------------------DPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec-------------------cCCCCCCCCccc
Confidence            457888888885               25888888887632                   248888888854

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.88  E-value=0.0054  Score=60.36  Aligned_cols=42  Identities=26%  Similarity=0.711  Sum_probs=33.4

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEe
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAM  299 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~  299 (311)
                      ...|..|+|+|....                ....+|+.|.|+|.+               .|++|.|+|+..
T Consensus       146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  202 (378)
T PRK14283        146 TKKCPVCNGSRAEPG----------------SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV  202 (378)
T ss_pred             eccCCCCCccccCCC----------------CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence            368999999996521                134579999999874               599999999985

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.82  E-value=0.0064  Score=59.52  Aligned_cols=38  Identities=34%  Similarity=0.989  Sum_probs=27.0

Q ss_pred             eeeccccccceee---------------cCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~~---------------~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|..|+|+|..               +|..|+|+|...                   ..+|+.|.|+|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence            4578888888752               588888888763                   2358888888754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.0039  Score=59.81  Aligned_cols=66  Identities=26%  Similarity=0.524  Sum_probs=48.1

Q ss_pred             Eeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCee
Q 021554          226 VKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTG  296 (311)
Q Consensus       226 Vk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG  296 (311)
                      +.......|..|.|.|.      ..|..|+|+|.+......  .+      ..   .+|..|.|.|++   .|..|.|.|
T Consensus       159 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f------~~---~~~~~c~~~~~~~~~~c~~~~g~~  227 (288)
T KOG0715|consen  159 ISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKED--PF------IL---YTCSYCLGRGLVLRDNCQACSGAG  227 (288)
T ss_pred             eEEEeecccccccCcCcccccccccchhhhCcccccccccC--Cc------ce---eecccccccceeccchHHHhhcch
Confidence            33445569999999996      689999999976442221  11      11   289999999998   599999999


Q ss_pred             EEecee
Q 021554          297 MAMASE  302 (311)
Q Consensus       297 ~v~a~E  302 (311)
                      ++...+
T Consensus       228 ~v~~~k  233 (288)
T KOG0715|consen  228 QVRRAK  233 (288)
T ss_pred             hhhhhe
Confidence            665443

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.40  E-value=0.011  Score=53.99  Aligned_cols=26  Identities=35%  Similarity=0.866  Sum_probs=21.7

Q ss_pred             eeeccccccceee-----cCCCCcccceEEe
Q 021554          231 QKRCKYCLGTGYL-----ACARCSNTGSLVL  256 (311)
Q Consensus       231 ~k~C~~C~GTG~~-----~C~~C~GSG~v~~  256 (311)
                      ...|+.|+|+|..     +|+.|+|+|.+..
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            4589999999973     5999999999854

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.30  E-value=0.019  Score=50.31  Aligned_cols=50  Identities=24%  Similarity=0.612  Sum_probs=37.6

Q ss_pred             ceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeC
Q 021554          230 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMC  289 (311)
Q Consensus       230 ~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~C  289 (311)
                      ....|..|.|.+.++|..|+||=.+...+..    +      .....+|+.|+=.|-++|
T Consensus        98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----~------~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----A------AGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCCcCeEECCCCCCcceEEeccCc----c------cccEEECCCCCccccccC
Confidence            3457999999999999999999998653211    0      113578888888887776

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=94.06  E-value=0.041  Score=46.59  Aligned_cols=24  Identities=33%  Similarity=0.861  Sum_probs=13.0

Q ss_pred             eeeccccccceeecCCCCcccceE
Q 021554          231 QKRCKYCLGTGYLACARCSNTGSL  254 (311)
Q Consensus       231 ~k~C~~C~GTG~~~C~~C~GSG~v  254 (311)
                      ...|+.|+|+|...|..|+|+|.+
T Consensus        75 ~~~C~~C~G~Gk~~C~~C~G~G~~   98 (111)
T PLN03165         75 VSKCINCDGAGSLTCTTCQGSGIQ   98 (111)
T ss_pred             EEECCCCCCcceeeCCCCCCCEEE
Confidence            345555555555555555555554

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.26  E-value=0.25  Score=49.02  Aligned_cols=73  Identities=26%  Similarity=0.589  Sum_probs=47.1

Q ss_pred             hhhhhhhhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee----------------ecCC
Q 021554          183 SYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY----------------LACA  246 (311)
Q Consensus       183 ~y~~fi~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~----------------~~C~  246 (311)
                      +++|+....+.|+.|+.-.  +++-+=|.-+          +.   -....|..|.|+|.                ..|.
T Consensus       110 ~Le~~y~G~s~kl~l~~~~--iCs~C~GsGg----------ks---g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~  174 (337)
T KOG0712|consen  110 TLEELYMGKSKKLFLSRNF--ICSKCSGSGG----------KS---GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD  174 (337)
T ss_pred             EHHHhhcCCccceecccCc--cCCcCCCCCC----------CC---CCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence            4778877778888777542  4444433221          01   12337999999985                4677


Q ss_pred             CCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          247 RCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       247 ~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      .|.|+|...                 ....+|+.|.|++.+
T Consensus       175 ~C~G~G~~~-----------------~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  175 SCNGSGETI-----------------SLKDRCKTCSGAKVV  198 (337)
T ss_pred             cCCCccccc-----------------cccccCcccccchhh
Confidence            777777652                 135679999999865

>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional

Probab=85.36  E-value=0.98  Score=44.32  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             eCCCCCCeeEEeceeeCCCCCCC
Q 021554          288 MCPTCLCTGMAMASEHDPRIDPF  310 (311)
Q Consensus       288 ~CptC~GtG~v~a~EhdprIdpf  310 (311)
                      .|.+|++.=++.-.+.|+.+||+
T Consensus       254 ~C~~C~~YlK~~~~~~d~~~~p~  276 (309)
T PRK03564        254 SCGDCGTYLKILYQEKDPKVEAV  276 (309)
T ss_pred             ecccccccceecccccCCCCCcc
Confidence            69999998888888999999997

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=81.92  E-value=1.3  Score=38.81  Aligned_cols=13  Identities=15%  Similarity=0.337  Sum_probs=8.5

Q ss_pred             eecCCCCcccceE
Q 021554          242 YLACARCSNTGSL  254 (311)
Q Consensus       242 ~~~C~~C~GSG~v  254 (311)
                      ...|..|.|.+++
T Consensus        99 ~~~C~~Cgg~rfv  111 (147)
T cd03031          99 GGVCEGCGGARFV  111 (147)
T ss_pred             CCCCCCCCCcCeE
Confidence            3457777776666

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR00595 priA primosomal protein N'

Probab=80.44  E-value=1.6  Score=44.90  Aligned_cols=56  Identities=21%  Similarity=0.466  Sum_probs=38.5

Q ss_pred             eeeEeecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCCCCe
Q 021554          223 VNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT  295 (311)
Q Consensus       223 innVk~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~Gt  295 (311)
                      +|.........|..|.-  ...|++|+++=.....               ...-.|+.|+-.-..  .||.|.+.
T Consensus       205 lnrrGya~~~~C~~Cg~--~~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~C~s~  262 (505)
T TIGR00595       205 LNRRGYSKNLLCRSCGY--ILCCPNCDVSLTYHKK---------------EGKLRCHYCGYQEPIPKTCPQCGSE  262 (505)
T ss_pred             EeCCcCCCeeEhhhCcC--ccCCCCCCCceEEecC---------------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence            45555556678999942  2689999876544321               245679999987765  79999764

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=80.24  E-value=1.6  Score=47.29  Aligned_cols=55  Identities=25%  Similarity=0.590  Sum_probs=39.0

Q ss_pred             eeeEeecceeecccccccee-ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCCCCe
Q 021554          223 VNNVKQQEQKRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT  295 (311)
Q Consensus       223 innVk~q~~k~C~~C~GTG~-~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~Gt  295 (311)
                      +|..-......|+.|   |+ ..|++|...=.....               ...-.|+.|+-...+  .||.|.++
T Consensus       427 lnRRGys~~l~C~~C---g~v~~Cp~Cd~~lt~H~~---------------~~~L~CH~Cg~~~~~p~~Cp~Cgs~  484 (730)
T COG1198         427 LNRRGYAPLLLCRDC---GYIAECPNCDSPLTLHKA---------------TGQLRCHYCGYQEPIPQSCPECGSE  484 (730)
T ss_pred             EccCCccceeecccC---CCcccCCCCCcceEEecC---------------CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence            344334456679999   45 689999987544321               246789999988666  79999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 31/97 (31%)

Query: 42  RASEPES-----SSFAPSI---DAESADKNAAGFCIIEGPETVQDFAKMELQEIHDNIRS 93
              EPES           +   DA S           E        AK +L+E +     
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVMEQE---WREK-------AKKDLEEWNQ---- 125

Query: 94  RRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNEL 130
           R++      E+V + +I  RI +       ++ D ++
Sbjct: 126 RQS------EQVEKNKINNRIADKAF---YQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.38
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.19
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.08
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.82
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.5
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.25
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	96.95
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.87
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.12
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.05
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	85.8

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.8e-13  Score=108.52  Aligned_cols=90  Identities=22%  Similarity=0.425  Sum_probs=72.4

Q ss_pred             hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554          190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      +.++++.|++.|    .|+|..+            ++++++...|+.|+|+|.      .+|+.|+|+|++....     
T Consensus         3 ~~~~~l~vslee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-----   61 (104)
T 2ctt_A            3 SGSSGMELTFNQ----AAKGVNK------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-----   61 (104)
T ss_dssp             CCCCCCCCCCSS----CCSSSCT------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-----
T ss_pred             ceEEEEEEEHHH----HcCCCEE------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-----
Confidence            467888999999    8899865            566778899999999994      6899999999986542     


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEeceeeCCCC
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASEHDPRI  307 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~EhdprI  307 (311)
                       |     .++...+|+.|+|+|++   +|+.|+|.|.+.. +....|
T Consensus        62 -G-----~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~-~k~l~V  101 (104)
T 2ctt_A           62 -G-----PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ-KKRSGP  101 (104)
T ss_dssp             -T-----TEEEEEECSSSSSSSEECSSCCSSSSSCSEECC-CCSSCC
T ss_pred             -C-----CEEEEEECCcCCCcceECCCcCCCCCCeeEEEE-EEEEEE
Confidence             2     13457899999999998   7999999999864 344444

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.19  E-value=4.8e-12  Score=115.62  Aligned_cols=90  Identities=21%  Similarity=0.520  Sum_probs=70.6

Q ss_pred             hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554          189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV  263 (311)
Q Consensus       189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c  263 (311)
                      ..+.+.+.|++.|    .|+|..+            ++++.+...|..|+|+|+     .+|+.|+|+|++....+.   
T Consensus        12 ~d~~~~l~vslee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~---   72 (248)
T 1nlt_A           12 KDIKHEISASLEE----LYKGRTA------------KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM---   72 (248)
T ss_dssp             CCEEEEEEECTTH----HHHCEEE------------EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEES---
T ss_pred             CCEEEEEEecHHH----hcCCceE------------EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEec---
Confidence            3556777788887    7888754            566677889999999995     689999999998765443   


Q ss_pred             CCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEece
Q 021554          264 NGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMAS  301 (311)
Q Consensus       264 ~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a~  301 (311)
                       |   ++.++.+.+|+.|+|+|++     +|++|+|.|.+...
T Consensus        73 -g---~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~  111 (248)
T 1nlt_A           73 -G---PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENER  111 (248)
T ss_dssp             -S---SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEE
T ss_pred             -C---ceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeee
Confidence             2   2334567899999999964     79999999998764

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.08  E-value=5.5e-11  Score=90.05  Aligned_cols=65  Identities=23%  Similarity=0.666  Sum_probs=53.3

Q ss_pred             eEeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCe
Q 021554          225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT  295 (311)
Q Consensus       225 nVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~Gt  295 (311)
                      ++++.+...|+.|+|+|.      .+|+.|+|+|.+...+      |     .++...+|+.|+|+|++   +|+.|+|.
T Consensus         5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~   73 (79)
T 1exk_A            5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ------G-----FFAVQQTCPHCQGRGTLIKDPCNKCHGH   73 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE------T-----TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred             EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc------C-----CCEEeeECcCCCCccEECCCcCCCCCCe
Confidence            456678889999999995      5899999999986532      2     12356799999999998   89999999


Q ss_pred             eEEec
Q 021554          296 GMAMA  300 (311)
Q Consensus       296 G~v~a  300 (311)
                      |.+..
T Consensus        74 G~~~~   78 (79)
T 1exk_A           74 GRVER   78 (79)
T ss_dssp             SEEEC
T ss_pred             EEEee
Confidence            99863

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.82  E-value=1.2e-05  Score=60.48  Aligned_cols=43  Identities=33%  Similarity=0.852  Sum_probs=34.7

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      ...|+.|+|+|...         +       ....+|+.|+|+|++           .|+.|+|+|.+..
T Consensus        11 ~~~C~~C~G~G~~~---------~-------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~   64 (79)
T 1exk_A           11 LEECDVCHGSGAKP---------G-------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK   64 (79)
T ss_dssp             EEECGGGTTTSBCS---------S-------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred             ceECCCCcccccCC---------C-------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC
Confidence            47899999999742         1       134689999999965           7999999999863

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=6.7e-05  Score=59.67  Aligned_cols=39  Identities=36%  Similarity=1.011  Sum_probs=32.0

Q ss_pred             ceeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       230 ~~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ....|+.|+|+|.           .+|+.|+|+|.+.                   ..+|+.|.|.|++
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v   93 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQA   93 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEE
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEE
Confidence            3568999999995           3799999999873                   2469999999986

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.25  E-value=0.00013  Score=52.90  Aligned_cols=28  Identities=39%  Similarity=1.000  Sum_probs=23.9

Q ss_pred             CceeCCCCCCCcee---eCCCCCCeeEEece
Q 021554          274 KTERCSNCSGSGKV---MCPTCLCTGMAMAS  301 (311)
Q Consensus       274 ~~~rCp~C~G~GKv---~CptC~GtG~v~a~  301 (311)
                      ...+|+.|+|+|++   +|+.|+|+|.+...
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            35789999999996   89999999988754

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=96.95  E-value=0.00027  Score=64.34  Aligned_cols=40  Identities=33%  Similarity=0.833  Sum_probs=29.9

Q ss_pred             eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      ...|+.|+|+|.               .+|+.|+|+|.+..                 ...+|+.|.|.|.+
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence            368999999884               36888888886631                 24579999998865

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.87  E-value=0.00061  Score=49.34  Aligned_cols=26  Identities=27%  Similarity=0.876  Sum_probs=18.8

Q ss_pred             ceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554          275 TERCSNCSGSGKV---MCPTCLCTGMAMA  300 (311)
Q Consensus       275 ~~rCp~C~G~GKv---~CptC~GtG~v~a  300 (311)
                      ..+|+.|+|+|++   +|+.|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            3567777777765   6888888887764

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.12  E-value=0.0022  Score=46.38  Aligned_cols=27  Identities=26%  Similarity=0.747  Sum_probs=20.4

Q ss_pred             ceeecccccccee---ecCCCCcccceEEe
Q 021554          230 EQKRCKYCLGTGY---LACARCSNTGSLVL  256 (311)
Q Consensus       230 ~~k~C~~C~GTG~---~~C~~C~GSG~v~~  256 (311)
                      -...|+.|+|+|.   .+|+.|+|+|.+..
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            3457888888887   57888888887754

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.05  E-value=0.0032  Score=45.54  Aligned_cols=26  Identities=27%  Similarity=0.689  Sum_probs=17.3

Q ss_pred             eeecccccccee---ecCCCCcccceEEe
Q 021554          231 QKRCKYCLGTGY---LACARCSNTGSLVL  256 (311)
Q Consensus       231 ~k~C~~C~GTG~---~~C~~C~GSG~v~~  256 (311)
                      ...|+.|+|+|.   .+|+.|+|+|.+..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            346777777775   46777777776654

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=85.80  E-value=0.029  Score=58.24  Aligned_cols=69  Identities=13%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             eeEeecceeecccccccee---------ecCCCCcccceEEeee-----ccccc-CCCCCCCCCCCceeCCCCCCCce--
Q 021554          224 NNVKQQEQKRCKYCLGTGY---------LACARCSNTGSLVLIE-----PVSTV-NGGDQPLSAPKTERCSNCSGSGK--  286 (311)
Q Consensus       224 nnVk~q~~k~C~~C~GTG~---------~~C~~C~GSG~v~~~~-----~~s~c-~G~~g~~~~q~~~rCp~C~G~GK--  286 (311)
                      +++++.+...|..|+|+|.         .+|..|+|+.......     ..... .|  +  ..+....|..|+..+.  
T Consensus       184 k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G--~--fP~~~~~C~~CH~~~~~l  259 (669)
T 3pmq_A          184 YTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLT--G--FPQSISNCQTCHADNPDL  259 (669)
T ss_dssp             CCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTS--S--CSSCTTCCTTTSCCCTTC
T ss_pred             eEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeecc--C--CCCccCcchhhcCCcccc
Confidence            4566778889999999873         5799999994221000     00000 11  0  1133567999998764  


Q ss_pred             ------------eeCCCCCCee
Q 021554          287 ------------VMCPTCLCTG  296 (311)
Q Consensus       287 ------------v~CptC~GtG  296 (311)
                                  ..|..||...
T Consensus       260 a~~~~w~~~ps~~aC~sCH~~~  281 (669)
T 3pmq_A          260 ADRQNWYRVPTMEACGACHTQI  281 (669)
T ss_dssp             CSCSCTTTCCCHHHHHHHCCSC
T ss_pred             ccccccccCCchhhhhhccCCc
Confidence                        1599998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.17
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.1
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.57
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.5
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.75
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	84.88
d1guqa1	176	Galactose-1-phosphate uridylyltransferase {Escheri	80.11

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.9e-12  Score=95.22  Aligned_cols=66  Identities=24%  Similarity=0.667  Sum_probs=54.2

Q ss_pred             eEeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCe
Q 021554          225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT  295 (311)
Q Consensus       225 nVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~Gt  295 (311)
                      +|++++...|+.|+|+|+      ..|+.|+|+|++....      |     .++..++|+.|+|+|++   +|+.|.|+
T Consensus         5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~------g-----~~~~~~~C~~C~G~G~~i~~~C~~C~G~   73 (79)
T d1exka_           5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ------G-----FFAVQQTCPHCQGRGTLIKDPCNKCHGH   73 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE------T-----TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred             EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec------c-----cceeeEECcccCcceeECCCCCCCCCCc
Confidence            566778899999999985      5799999999886432      1     23456799999999998   89999999


Q ss_pred             eEEece
Q 021554          296 GMAMAS  301 (311)
Q Consensus       296 G~v~a~  301 (311)
                      |.+.++
T Consensus        74 G~v~kt   79 (79)
T d1exka_          74 GRVERS   79 (79)
T ss_dssp             SEEECC
T ss_pred             eEeecC
Confidence            998763

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.7e-11  Score=91.91  Aligned_cols=62  Identities=26%  Similarity=0.624  Sum_probs=51.0

Q ss_pred             eeecccccccee-----ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEe
Q 021554          231 QKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAM  299 (311)
Q Consensus       231 ~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~  299 (311)
                      ...|+.|+|+|+     .+|..|+|+|++.......       ++.++...+|+.|.|+|++     +|+.|+|+|++.
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG-------PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-------SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEec-------CcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            568999999995     5799999999998765442       2345567899999999986     699999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.5e-05  Score=59.20  Aligned_cols=43  Identities=33%  Similarity=0.852  Sum_probs=34.8

Q ss_pred             eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554          242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA  300 (311)
Q Consensus       242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a  300 (311)
                      +..|+.|+|+|...         |       ....+|+.|+|+|++           .|+.|+|+|++..
T Consensus        11 ~~~C~~C~G~G~~~---------g-------~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~   64 (79)
T d1exka_          11 LEECDVCHGSGAKP---------G-------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK   64 (79)
T ss_dssp             EEECGGGTTTSBCS---------S-------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred             eccCCCCcCcccCC---------C-------ccceeCCCccceeEEEEecccceeeEECcccCcceeECC
Confidence            47899999999652         1       135689999999976           6999999999873

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=8.3e-06  Score=60.20  Aligned_cols=41  Identities=29%  Similarity=0.797  Sum_probs=32.6

Q ss_pred             ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554          243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA  300 (311)
Q Consensus       243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a  300 (311)
                      +.|+.|+|+|...         +        ...+|+.|+|+|++               .|+.|.|+|++..
T Consensus         3 v~C~~C~G~G~~~---------~--------~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~   58 (74)
T d1nlta3           3 ILCKECEGRGGKK---------G--------AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID   58 (74)
T ss_dssp             EECTTTTTCSBST---------T--------TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC
T ss_pred             cCCcCCcccccCC---------C--------CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC
Confidence            6899999999541         1        23469999999964               5999999998764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.75  E-value=4.5e-05  Score=56.66  Aligned_cols=61  Identities=18%  Similarity=0.308  Sum_probs=44.6

Q ss_pred             ecccccccee---------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554          233 RCKYCLGTGY---------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA  300 (311)
Q Consensus       233 ~C~~C~GTG~---------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a  300 (311)
                      .|..|+|+|.         ..|..|+|+|........  ..+     ....-..|+.|.|.|+.   .|..|++.|+..+
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~--~h~-----~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~~   85 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHK--PHD-----GNLVCADCHAVHDMNVGQKPTCESCHDDGRTSA   85 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTG--GGT-----TTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCHH
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccc--ccc-----CccccccCccccCCCCcCCCccccccCCCcccc
Confidence            6999999874         369999999976432211  122     23456789999998875   7999999997654

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=84.88  E-value=0.097  Score=37.84  Aligned_cols=37  Identities=19%  Similarity=0.558  Sum_probs=25.8

Q ss_pred             eecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554          232 KRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV  287 (311)
Q Consensus       232 k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv  287 (311)
                      +.|..|+|+|.               ..|..|+|.|..                   ....|..|.+.|+.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~-------------------~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG-------------------QKPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT-------------------CCCCSTTTCSSCCC
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCc-------------------CCCccccccCCCcc
Confidence            47999999884               346666665421                   23569999999874

>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=80.11  E-value=1.4  Score=36.05  Aligned_cols=36  Identities=11%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             CCceE--EeeCchhHHHHHhhhHHHHHHHHHhhhhhhh
Q 021554           64 AAGFC--IIEGPETVQDFAKMELQEIHDNIRSRRNKIF   99 (311)
Q Consensus        64 ~~~~~--~~~~~~~~~d~~~m~~~ei~~ni~~r~~ki~   99 (311)
                      ..|+|  |||+|+--.+|+.|..++|++=|+.=|+++.
T Consensus       101 ~~G~heVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~  138 (176)
T d1guqa1         101 ARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTA  138 (176)
T ss_dssp             CCEEEEEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEECcccccChhhCCHHHHHHHHHHHHHHHH
Confidence            45554  9999999999999999999998877666543