Citrus Sinensis ID: 021571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMMP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msasghrssmstssssssssvpareidPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDeknsslkeHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMMP
Flexible Loop (DISEMBL)
msasghrssmstssssssssvparEIDPLLKDLNEKKQSFRKNVVSLAAELKEVrtrlasqeqcfvkETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAkagvnkdcELRKLldevspknferinkllvvkdeeihKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEaraqtrklqRVMLYISYHSGMMP
Low Complexity Region (SEG)
MsasghrssmstssssssssVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRsqlaatkatadasaasaqsaqlqclalVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMMP
Disordered region (IsUnstruct)
**********************************************L****************CFV*************************************ACTAEKYLMQLDG*************************CLAL*********************************************VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLK********************RVLKLEFCLQEARAQTRKLQRVMLYISYH*****
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************VMLYISYHSGMM*
Disordered Region (DISEMBL)
***********************REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL****************AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL*********LKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHSGMMP
Disordered Region (DISPRO)
******************SSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYISYHS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASGHRSSMSTSSSSSSSSVPAREIDPLxxxxxxxxxxxxxxxxxxxxxLKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKxxxxxxxxxxxxxxxxxxxxxVLKLEFCLQEARAQTRKLQRVMLYISYHSGMMP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
224124546	344	predicted protein [Populus trichocarpa]	0.932	0.840	0.837	1e-119
224122832	344	predicted protein [Populus trichocarpa]	0.932	0.840	0.802	1e-118
359487694	355	PREDICTED: uncharacterized protein LOC10	0.890	0.777	0.840	1e-117
255543022	340	conserved hypothetical protein [Ricinus	0.870	0.794	0.845	1e-116
356534981	346	PREDICTED: uncharacterized protein LOC10	0.919	0.823	0.807	1e-114
356575301	345	PREDICTED: uncharacterized protein LOC10	0.932	0.837	0.799	1e-114
296089842	349	unnamed protein product [Vitis vinifera]	0.861	0.765	0.838	1e-113
449453990	347	PREDICTED: uncharacterized protein LOC10	0.890	0.795	0.789	1e-109
297812883	1147	hypothetical protein ARALYDRAFT_326902 [	0.877	0.237	0.724	1e-106
147780245	444	hypothetical protein VITISV_037754 [Viti	0.825	0.576	0.786	1e-106

>gi|224124546|ref|XP_002330050.1| predicted protein [Populus trichocarpa] gi|222871475|gb|EEF08606.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/289 (83%), Positives = 263/289 (91%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS    SSS+S P REIDPLLKDLNEKK SFRKNVVSLAAELK VR RLASQEQ F KET
Sbjct: 1   MSVLERSSSTSTPVREIDPLLKDLNEKKLSFRKNVVSLAAELKGVRNRLASQEQSFAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
            TRQEAE KAK ME+EI +LQ+ +EERNG+L ASA TA+KYL +LD LRSQLAAT+ATAD
Sbjct: 61  ETRQEAENKAKIMEEEISRLQERMEERNGQLLASASTADKYLTELDRLRSQLAATQATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQSAQLQCLAL+KELD KNSSLKEHE+RVTRLG+QLDNLQKDLQARESSQKQLKD
Sbjct: 121 ASAASAQSAQLQCLALIKELDAKNSSLKEHEERVTRLGEQLDNLQKDLQARESSQKQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+ I++AG +KDCELRKLLDEVSPKNFE++NKLLVVKDEEI KLKDEI++M
Sbjct: 181 EVTRIEHDIMKAISQAGDSKDCELRKLLDEVSPKNFEKMNKLLVVKDEEITKLKDEIRVM 240

Query: 250 SAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           SAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR+
Sbjct: 241 SAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRM 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122832|ref|XP_002318927.1| predicted protein [Populus trichocarpa] gi|222857303|gb|EEE94850.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/289 (80%), Positives = 257/289 (88%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS     SS S   RE DPLLKDLNEKKQ FRKNVVSLAAELKE R RLASQEQ F KET
Sbjct: 1   MSVLEKPSSISSSVRETDPLLKDLNEKKQGFRKNVVSLAAELKEARNRLASQEQSFAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
           +TRQEAE KAK ME EI +LQ+ LEE+NG+LQ +A TAEKYL +LDGLRSQLAAT+ATAD
Sbjct: 61  VTRQEAENKAKTMEVEISRLQERLEEKNGQLQVTASTAEKYLTELDGLRSQLAATRATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQS QLQCLAL+KE+D KNSSLKEHE+RV+RLG QLDNLQKDLQARESSQ+QLKD
Sbjct: 121 ASAASAQSVQLQCLALIKEIDAKNSSLKEHEERVSRLGDQLDNLQKDLQARESSQRQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+ I++AG +KDCELRKLLDEVSPKNF+++NK+LVVKDEEI KLKDEI++M
Sbjct: 181 EVMRIEHDIMRAISQAGDSKDCELRKLLDEVSPKNFDKMNKILVVKDEEIAKLKDEIRVM 240

Query: 250 SAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           S HWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTR+LQR+
Sbjct: 241 STHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRRLQRM 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487694|ref|XP_002276639.2| PREDICTED: uncharacterized protein LOC100259639 [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/276 (84%), Positives = 253/276 (91%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            R+IDPLLKDLNEKKQSFRKNVVSLAAELKEVR RLASQEQ F KETL R+ AE KAK+M
Sbjct: 26  VRDIDPLLKDLNEKKQSFRKNVVSLAAELKEVRGRLASQEQSFAKETLNRKVAETKAKSM 85

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E+EI +LQK+LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQC
Sbjct: 86  EEEIGRLQKSLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQC 145

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           LAL+KELDEKN SLKEH DRV RLG+QLDNLQKDLQARE SQKQLKDEV RIE DIMQ +
Sbjct: 146 LALIKELDEKNISLKEHGDRVNRLGEQLDNLQKDLQAREYSQKQLKDEVLRIEHDIMQAV 205

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AKAG N+DCELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ES
Sbjct: 206 AKAGANRDCELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMES 265

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           QLEK RRADQELKKRVLKLEFCLQEARAQTRKLQR+
Sbjct: 266 QLEKHRRADQELKKRVLKLEFCLQEARAQTRKLQRM 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543022|ref|XP_002512574.1| conserved hypothetical protein [Ricinus communis] gi|223548535|gb|EEF50026.1| conserved hypothetical protein [Ricinus communis]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/278 (84%), Positives = 255/278 (91%), Gaps = 8/278 (2%)

Query: 21  VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAK 80
           VP RE+DPLLKDLNEKKQSFR+NVVSLAAELKEVR+RLASQEQ F        EAE KAK
Sbjct: 16  VPVRELDPLLKDLNEKKQSFRRNVVSLAAELKEVRSRLASQEQSF--------EAENKAK 67

Query: 81  NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQL 140
            ME+EIC LQ+ LEERNG+LQ SA TAEKYL +LDGLRSQLAAT+ATADASAASAQSAQL
Sbjct: 68  TMEEEICILQRRLEERNGQLQTSASTAEKYLDELDGLRSQLAATQATADASAASAQSAQL 127

Query: 141 QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
           QCLAL+KELD KNSSLKEHEDRVTRLG+QLDNLQKDLQARESSQ+QLKD+V RIEQDIM+
Sbjct: 128 QCLALLKELDMKNSSLKEHEDRVTRLGEQLDNLQKDLQARESSQRQLKDDVLRIEQDIME 187

Query: 201 TIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260
            IAKAG  KDCELRKLLDEVSPKNFE+IN+LLVVKDEEI KLKDEI+IMSAHWKLKTK+L
Sbjct: 188 AIAKAGTGKDCELRKLLDEVSPKNFEKINRLLVVKDEEIAKLKDEIRIMSAHWKLKTKDL 247

Query: 261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           E+QLEKQRRADQELKKRVLKLEFCLQEAR+QTRKLQR+
Sbjct: 248 ETQLEKQRRADQELKKRVLKLEFCLQEARSQTRKLQRM 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534981|ref|XP_003536028.1| PREDICTED: uncharacterized protein LOC100777398 isoform 1 [Glycine max]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/285 (80%), Positives = 259/285 (90%)

Query: 14  SSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQ 73
           SSS +S+V ARE+DPLL+DLNEKKQSFR+NVVSLA ELKE+R+RLASQEQ + KET TRQ
Sbjct: 6   SSSLTSTVAAREVDPLLQDLNEKKQSFRRNVVSLAVELKELRSRLASQEQSYAKETQTRQ 65

Query: 74  EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA 133
           EAE  AKNME +I +LQK LEERN +LQASA +AEKYL +LD LR+QL  T+ATADASAA
Sbjct: 66  EAETNAKNMELQIGRLQKNLEERNEQLQASASSAEKYLKELDDLRTQLVTTRATADASAA 125

Query: 134 SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFR 193
           SAQSAQLQCL LVKEL+EKN SL+EHEDRV RLG+QLDNLQKDLQARESSQKQLKDEV R
Sbjct: 126 SAQSAQLQCLELVKELNEKNGSLREHEDRVLRLGEQLDNLQKDLQARESSQKQLKDEVLR 185

Query: 194 IEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW 253
           IE DIM+ +AKAG NK+CELRK+LDEVSPKNFE++NK+L VKD+EI KLKDEIKIMSAHW
Sbjct: 186 IEHDIMEALAKAGENKNCELRKILDEVSPKNFEKMNKILGVKDDEIAKLKDEIKIMSAHW 245

Query: 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           KLKTKELESQLEKQRRADQELKK+VLKLEFCLQEAR+QTRKLQR+
Sbjct: 246 KLKTKELESQLEKQRRADQELKKKVLKLEFCLQEARSQTRKLQRM 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575301|ref|XP_003555780.1| PREDICTED: uncharacterized protein LOC100798343 [Glycine max]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/289 (79%), Positives = 257/289 (88%)

Query: 10  MSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69
           MS   SSS +S+ ARE DP+L+DLNEKKQSFR+NVVSLA ELKE+R+RLASQEQ + KET
Sbjct: 1   MSEKPSSSLTSIAAREADPVLQDLNEKKQSFRRNVVSLAVELKELRSRLASQEQSYAKET 60

Query: 70  LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD 129
           LTRQEAE  AKNME +I +LQK LEE+N +LQAS  +AEKYL +LD LR+QL AT+ATAD
Sbjct: 61  LTRQEAETNAKNMELQIGRLQKNLEEKNEQLQASTSSAEKYLKELDELRTQLVATRATAD 120

Query: 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           ASAASAQSAQLQCL LVKELDEKN SL+EHEDRV RLG+QLDNLQKDLQARESSQKQLKD
Sbjct: 121 ASAASAQSAQLQCLELVKELDEKNGSLREHEDRVLRLGEQLDNLQKDLQARESSQKQLKD 180

Query: 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249
           EV RIE DIM+  AKAG NK+CELRK+LDEVSPKNFE++NKLL VKDEEI KLKDEIKIM
Sbjct: 181 EVLRIEHDIMEAFAKAGENKNCELRKILDEVSPKNFEKMNKLLGVKDEEIAKLKDEIKIM 240

Query: 250 SAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           SA WKLKTK LESQLEKQRRADQELKK+VLKLEFCLQEAR+QTRKLQR+
Sbjct: 241 SAQWKLKTKGLESQLEKQRRADQELKKKVLKLEFCLQEARSQTRKLQRM 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089842|emb|CBI39661.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/267 (83%), Positives = 245/267 (91%)

Query: 32  DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQK 91
           DLNEKKQSFRKNVVSLAAELKEVR RLASQEQ F KETL R+ +E KAK+ME+EI +LQK
Sbjct: 29  DLNEKKQSFRKNVVSLAAELKEVRGRLASQEQSFAKETLNRKASETKAKSMEEEIGRLQK 88

Query: 92  TLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE 151
           +LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQCLAL+KELDE
Sbjct: 89  SLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQCLALIKELDE 148

Query: 152 KNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDC 211
           KN SLKEH DRV RLG+QLDNLQKDLQARE SQKQLKDEV RIE DIMQ +AKAG N+DC
Sbjct: 149 KNISLKEHGDRVNRLGEQLDNLQKDLQAREYSQKQLKDEVLRIEHDIMQAVAKAGANRDC 208

Query: 212 ELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRAD 271
           ELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ESQLEK RRAD
Sbjct: 209 ELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMESQLEKHRRAD 268

Query: 272 QELKKRVLKLEFCLQEARAQTRKLQRV 298
           QELKKRVLKLEFCLQEARAQTRKLQR+
Sbjct: 269 QELKKRVLKLEFCLQEARAQTRKLQRM 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453990|ref|XP_004144739.1| PREDICTED: uncharacterized protein LOC101221548 [Cucumis sativus] gi|449490792|ref|XP_004158708.1| PREDICTED: uncharacterized LOC101221548 [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/276 (78%), Positives = 248/276 (89%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
           ARE+DPLLKDLNE+KQSFR+NVVSLAAELKE R+RL+SQEQ F KET TRQ +E KA  M
Sbjct: 16  AREVDPLLKDLNERKQSFRRNVVSLAAELKEARSRLSSQEQSFAKETQTRQASETKANIM 75

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E EI +L   LEER+G+L+ASA TA KYL +LDGLR QL AT+ATADASAASAQSAQ QC
Sbjct: 76  EQEIGRLHAELEERDGQLKASATTATKYLHELDGLRLQLVATQATADASAASAQSAQNQC 135

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           L L+KELDEKN+S+KE+EDRV RLG+QLDNLQKDLQARESSQKQLKDEV R+E DI++ +
Sbjct: 136 LVLLKELDEKNTSIKEYEDRVKRLGEQLDNLQKDLQARESSQKQLKDEVMRVEHDILEAL 195

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AK+GV+KDCELRK+LDEVSP+N E+INKLL+ KDEEI KLK+EIK+MSAHWKLKTKELES
Sbjct: 196 AKSGVSKDCELRKILDEVSPRNLEKINKLLIAKDEEIAKLKNEIKMMSAHWKLKTKELES 255

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           QLEKQRRADQELKKRVLKLEFCLQEAR QTRKLQR+
Sbjct: 256 QLEKQRRADQELKKRVLKLEFCLQEARTQTRKLQRI 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812883|ref|XP_002874325.1| hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata] gi|297320162|gb|EFH50584.1| hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/272 (72%), Positives = 234/272 (86%)

Query: 26  IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85
           +DPLLKDL+ KK+SFR+NVVS+AAELK+VR RL  QEQ FVKE+  R+EAE KAKNME E
Sbjct: 9   VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVPQEQFFVKESFCRKEAEKKAKNMEME 68

Query: 86  ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLAL 145
           ICKLQK LE+RN  L+AS   AEK+L ++D LRSQLA TK  A+ S ASAQSAQLQC  L
Sbjct: 69  ICKLQKKLEDRNCELEASTSAAEKFLEEVDDLRSQLALTKEIAETSTASAQSAQLQCSVL 128

Query: 146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205
            ++LD+K  SL+EHEDRVT+LG QLDNLQ+DL+ RE SQKQL++EV RIE++I + +AK+
Sbjct: 129 TEQLDDKTRSLREHEDRVTQLGHQLDNLQRDLRTRECSQKQLREEVMRIEREITEAVAKS 188

Query: 206 GVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE 265
           G   +CELRKLL+EVSPKNFER+NKLL VKDEEI KLKD++K+MSAHWKLKTKELESQLE
Sbjct: 189 GKGTECELRKLLEEVSPKNFERMNKLLAVKDEEIAKLKDDVKLMSAHWKLKTKELESQLE 248

Query: 266 KQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
           +QRRADQELKK+VLKLEFCLQEAR+QTRKLQR
Sbjct: 249 RQRRADQELKKKVLKLEFCLQEARSQTRKLQR 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780245|emb|CAN65738.1| hypothetical protein VITISV_037754 [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/276 (78%), Positives = 238/276 (86%), Gaps = 20/276 (7%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            R+IDPLLKDLNEKKQSFRKNVVSLAAELKEV                    AE KAK+M
Sbjct: 135 VRDIDPLLKDLNEKKQSFRKNVVSLAAELKEV--------------------AETKAKSM 174

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E+EI +LQK+LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQC
Sbjct: 175 EEEIGRLQKSLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQC 234

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           LAL+KELDEKN SLKEH DRV RLG+QLD+LQKDLQARE SQKQLKDEV RIE DIMQ +
Sbjct: 235 LALIKELDEKNISLKEHGDRVNRLGEQLDHLQKDLQAREYSQKQLKDEVLRIEHDIMQAV 294

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AKAG N+DCELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ES
Sbjct: 295 AKAGANRDCELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMES 354

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
           QLEK RRADQELKKRVLKLEFCLQEARAQTRKLQR+
Sbjct: 355 QLEKHRRADQELKKRVLKLEFCLQEARAQTRKLQRM 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2148448	335	AT5G26770 "AT5G26770" [Arabido	0.877	0.811	0.654	1.4e-89
TAIR|locus:2012370	336	AT1G09470 "AT1G09470" [Arabido	0.896	0.827	0.539	4.5e-75
TAIR|locus:504956315	112	AT1G09483 "AT1G09483" [Arabido	0.161	0.446	0.76	4.7e-16
ZFIN|ZDB-GENE-081104-2	1926	tpra "translocated promoter re	0.780	0.125	0.212	5.4e-06
RGD|67404	1320	Clip1 "CAP-GLY domain containi	0.835	0.196	0.215	2.5e-07
UNIPROTKB|F1MAH8	1320	Clip1 "Protein Clip1" [Rattus	0.835	0.196	0.215	2.5e-07
UNIPROTKB|F1P4A8	1431	GOLGA3 "Uncharacterized protei	0.8	0.173	0.208	2.7e-07
UNIPROTKB|E1BXY6	1519	GOLGA3 "Uncharacterized protei	0.8	0.163	0.208	2.9e-07
SGD|S000002366	538	GLE1 "Cytoplasmic nucleoporin	0.403	0.232	0.304	3.7e-07
UNIPROTKB|F1NRD8	1088	MYH15 "Uncharacterized protein	0.425	0.121	0.310	7.2e-07

TAIR|locus:2148448 AT5G26770 "AT5G26770" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 178/272 (65%), Positives = 212/272 (77%)

Query:    26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85
             +DPLLKDL+ KK+SFR+NVVS+AAELK+VR RL SQEQ FVKE+  R+EAE KAKNME E
Sbjct:     9 VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVSQEQFFVKESFCRKEAEKKAKNMEME 68

Query:    86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
             ICKLQK LE+RN  L AS   AEK+L ++D LR                           
Sbjct:    69 ICKLQKKLEDRNCELVASTSAAEKFLEEVDDLRSQLALTKDIAETSAASAQSAQLQCSVL 128

Query:   146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205
              ++LD+K  SL+EHEDRVT LG QLDNLQ+DL+ RE SQKQL++EV RIE++I + +AK+
Sbjct:   129 TEQLDDKTRSLREHEDRVTHLGHQLDNLQRDLKTRECSQKQLREEVMRIEREITEAVAKS 188

Query:   206 GVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE 265
             G   +CELRKLL+EVSPKNFER+N LL VKDEEI KLKD++K+MSAHWKLKTKELESQLE
Sbjct:   189 GKGTECELRKLLEEVSPKNFERMNMLLAVKDEEIAKLKDDVKLMSAHWKLKTKELESQLE 248

Query:   266 KQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
             +QRRADQELKK+VLKLEFCLQEAR+QTRKLQR
Sbjct:   249 RQRRADQELKKKVLKLEFCLQEARSQTRKLQR 280

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012370 AT1G09470 "AT1G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 150/278 (53%), Positives = 199/278 (71%)

Query:    21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAK 80
             V  RE DPLLKDL+EKKQSFR+NVVSLA ELKE RTRLA QE+   KE ++RQEAE + K
Sbjct:     5 VSLREDDPLLKDLSEKKQSFRRNVVSLATELKEARTRLAEQERSCSKEAMSRQEAETRVK 64

Query:    81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXX 140
              MEDE+ +L K L E+  +++AS    EK++ +L  ++                      
Sbjct:    65 RMEDEMHELAKELNEKVEQIRASDVATEKFVKELADIKSQLAATHATAEASALSAESAHS 124

Query:   141 XXXXXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
                   K+L E+  SLKEHED+VTRLG+QL+NL+K+L+ RESSQKQL+DE+ ++E DIM+
Sbjct:   125 HCRVLSKQLHERTGSLKEHEDQVTRLGEQLENLRKELRVRESSQKQLRDELLKVEGDIMR 184

Query:   201 TIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260
              ++     ++ E+R +L+E +PKN ERINKLL  KD+EI +L+DE+KI+SAHW+ KTKEL
Sbjct:   185 AVSVVKTKENSEVRNMLNEDTPKNSERINKLLTAKDDEIARLRDELKIISAHWRFKTKEL 244

Query:   261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
             E Q+E QRR DQELKK+VLKLEFCL+E R QTRKLQ++
Sbjct:   245 EDQVENQRRIDQELKKKVLKLEFCLRETRIQTRKLQKM 282

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:504956315 AT1G09483 "AT1G09483" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query:   249 MSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRV 298
             MSAHW  KTKELE Q+E QRR DQELKK+VLKLEFCL+E R QTRKLQ++
Sbjct:     1 MSAHWTFKTKELEDQVENQRRIDQELKKKVLKLEFCLRETRIQTRKLQKM 50

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-081104-2 tpra "translocated promoter region a (to activated MET oncogene)" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 56/263 (21%), Positives = 116/263 (44%)

Query:    31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQ 90
             K L+ ++++  K +  L  E  +++  +A  +          Q  +     +  E   L+
Sbjct:   913 KKLHSERETHLKRIQQLTEETGKLKNEVARSQASITTAQSQVQNLQDSLGKVTTERDSLK 972

Query:    91 KTLEERNGRLQASACT-------AEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXX 143
             K LE +   +Q    T         +Y  Q + L+                         
Sbjct:   973 KELEAKTLDIQEKVKTITQVKKIGRRYKTQYEELKEQHDKMVAEAASKPAQEQEDRQAS- 1031

Query:   144 XXVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203
               V+E+    SSL + ++R + L  QLD +QK LQ RE+  K L++++ +++ ++ +  A
Sbjct:  1032 --VQEIQNLKSSLSQTQNRTSELETQLDCIQKTLQEREAEVKSLQEQLTQVQPELSRLKA 1089

Query:   204 KAGVNKDCE--LRKLL---DEVSPKNF----ERINKLLVVKDEEIHKLKDEIKIMSAHWK 254
             +       E  LR+ +   +E + K F    +++N+L   K E++ K  +E+K+     +
Sbjct:  1090 ELQEKGKLEEQLRQQIADKEEKTKKAFLGAKQKLNQLNSAK-EQLAKENEELKLQREELE 1148

Query:   255 LKTKELESQLE-KQRRADQELKK 276
             ++   L+SQ E +  R ++EL++
Sbjct:  1149 VRMSALKSQYEGRLSRQERELRE 1171

GO:0005643 "nuclear pore" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

RGD|67404 Clip1 "CAP-GLY domain containing linker protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 60/279 (21%), Positives = 125/279 (44%)

Query:    33 LNEKKQSFRKNVVSLAAELKEVRT---RLASQEQCFVKETLTRQEAEMKA--KNMEDEIC 87
             + E K SF K + + +AE  E++T   RL    Q  ++   ++Q++E  A  K ME    
Sbjct:   626 MEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMESMKA 685

Query:    88 KLQKTLEERNGRLQASAC---TAE-KYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXX 143
             KL K ++E+   L+A      TAE ++L++++ +                          
Sbjct:   686 KLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIKKEKFASASEEAVSTQT 745

Query:   144 X---XVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
                  V +L +K          + +L + L +++   + ++  + QL     ++E DI +
Sbjct:   746 SMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDEREDQLVKAKEKLENDIAE 805

Query:   201 TIAKAGVNKDCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK 258
              +  +G N   +L K+ DE+  K  + E +   L   +E    L+  I  ++    LK +
Sbjct:   806 IMKMSGDNSS-QLTKMNDELRLKERSVEELQLKLTKANENASLLQKSIGEVT----LKAE 860

Query:   259 ELESQLEKQRRADQ-ELKKRVLKLEFCLQEARAQTRKLQ 296
             + + +  K+   ++ EL+ ++L+LE  ++ +  Q + L+
Sbjct:   861 QSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLK 899

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO;TAS

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0015631 "tubulin binding" evidence=ISO

GO:0031116 "positive regulation of microtubule polymerization" evidence=ISO

GO:0035371 "microtubule plus end" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0044354 "macropinosome" evidence=ISO

UNIPROTKB|F1MAH8 Clip1 "Protein Clip1" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 60/279 (21%), Positives = 125/279 (44%)

Query:    33 LNEKKQSFRKNVVSLAAELKEVRT---RLASQEQCFVKETLTRQEAEMKA--KNMEDEIC 87
             + E K SF K + + +AE  E++T   RL    Q  ++   ++Q++E  A  K ME    
Sbjct:   626 MEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMESMKA 685

Query:    88 KLQKTLEERNGRLQASAC---TAE-KYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXX 143
             KL K ++E+   L+A      TAE ++L++++ +                          
Sbjct:   686 KLMKIIKEKEDSLEAVKARLDTAEDQHLVEMEEMLSKLQEAEIKKEKFASASEEAVSTQT 745

Query:   144 X---XVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200
                  V +L +K          + +L + L +++   + ++  + QL     ++E DI +
Sbjct:   746 SMQDTVNKLHQKEEQFNMLSSELEKLRENLTDMEAKFKEKDEREDQLVKAKEKLENDIAE 805

Query:   201 TIAKAGVNKDCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK 258
              +  +G N   +L K+ DE+  K  + E +   L   +E    L+  I  ++    LK +
Sbjct:   806 IMKMSGDNSS-QLTKMNDELRLKERSVEELQLKLTKANENASLLQKSIGEVT----LKAE 860

Query:   259 ELESQLEKQRRADQ-ELKKRVLKLEFCLQEARAQTRKLQ 296
             + + +  K+   ++ EL+ ++L+LE  ++ +  Q + L+
Sbjct:   861 QSQQEAAKKHEEEKKELENKLLELEKKMETSHYQCQDLK 899

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P4A8 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 55/264 (20%), Positives = 124/264 (46%)

Query:    38 QSFRKNVVS---LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94
             +++R++  S   L +ELK  + RL S+ +   +E L   + +++ +++E E  KLQK + 
Sbjct:   823 EAYRRDASSKDQLISELKATKKRLDSEMKELKRELL---QIQVEKQSLETEHSKLQKEVT 879

Query:    95 ERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXVKELDEKNS 154
             E + ++       +    + D +                             +  +E   
Sbjct:   880 EVHQQMVEIENHLQSVQKERDEMETRLQSLQFDKEQMASLAEANQTLKLQVEQMQEEAKK 939

Query:   155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELR 214
             ++ E + ++ RLG  L + QK+++A+    K  ++ V  + + + +++  A  + + EL 
Sbjct:   940 AITEQKQKMKRLGSDLTSAQKEMKAKH---KAYENAVSILSRRLQESLT-AKESAEAELS 995

Query:   215 KLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQEL 274
             KL  +++     +I +      E I  L+ E++ + +   +  KEL+  +    +  +E 
Sbjct:   996 KLKAQITDGGSNQIAQ------ERIQALETELQAVRSSKLMLEKELQEVISLTSQELEEY 1049

Query:   275 KKRVLKLEFCLQEARAQTRKLQRV 298
             +++VL+LE  LQE+R   RK++R+
Sbjct:  1050 REKVLELEDELQESRGFRRKIKRL 1073

GO:0000139 "Golgi membrane" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|E1BXY6 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 55/264 (20%), Positives = 124/264 (46%)

Query:    38 QSFRKNVVS---LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94
             +++R++  S   L +ELK  + RL S+ +   +E L   + +++ +++E E  KLQK + 
Sbjct:   868 EAYRRDASSKDQLISELKATKKRLDSEMKELKRELL---QIQVEKQSLETEHSKLQKEVT 924

Query:    95 ERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXVKELDEKNS 154
             E + ++       +    + D +                             +  +E   
Sbjct:   925 EVHQQMVEIENHLQSVQKERDEMETRLQSLQFDKEQMASLAEANQTLKLQVEQMQEEAKK 984

Query:   155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELR 214
             ++ E + ++ RLG  L + QK+++A+    K  ++ V  + + + +++  A  + + EL 
Sbjct:   985 AITEQKQKMKRLGSDLTSAQKEMKAKH---KAYENAVSILSRRLQESLT-AKESAEAELS 1040

Query:   215 KLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQEL 274
             KL  +++     +I +      E I  L+ E++ + +   +  KEL+  +    +  +E 
Sbjct:  1041 KLKAQITDGGSNQIAQ------ERIQALETELQAVRSSKLMLEKELQEVISLTSQELEEY 1094

Query:   275 KKRVLKLEFCLQEARAQTRKLQRV 298
             +++VL+LE  LQE+R   RK++R+
Sbjct:  1095 REKVLELEDELQESRGFRRKIKRL 1118

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0017119 "Golgi transport complex" evidence=IEA

SGD|S000002366 GLE1 "Cytoplasmic nucleoporin required for polyadenylated RNA export" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 105 (42.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 42/138 (30%), Positives = 66/138 (47%)

Query:   146 VKELDEKNSSLK-EHEDRVTRLGQQLDNLQKDLQARESSQKQL---KDEVFRIEQDIMQT 201
             ++E +EK   LK EHE    +L QQ D L K +   +   K     KD++ +I+QDI+  
Sbjct:   214 IEEQNEKERQLKKEHE---AKLLQQKDKLGKAVTNFDKISKMFWHYKDKIAQIKQDIVLP 270

Query:   202 IAKAGVNKDCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIK--IMSAHWKLK- 256
             I KA VN    L +   +++PK       N+ L     E+ +L ++ K   ++ HW L  
Sbjct:   271 IKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNF 330

Query:   257 -TKELESQLEKQRRADQE 273
               K +  Q E + R   E
Sbjct:   331 IAKAVVHQAETEVRVKPE 348

GO:0016021 "integral to membrane" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA;IDA

GO:0006406 "mRNA export from nucleus" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IMP

GO:0006449 "regulation of translational termination" evidence=IMP

GO:0044614 "nuclear pore cytoplasmic filaments" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IGI;IMP;IDA

GO:0031369 "translation initiation factor binding" evidence=IPI

GO:0000822 "inositol hexakisphosphate binding" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA;IMP

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1NRD8 MYH15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
 Identities = 45/145 (31%), Positives = 71/145 (48%)

Query:   157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI-AKAGVNKDC---- 211
             K+H D V  +G+QLDNLQ+  Q  E  + +LK EV  +  ++ QT+  KA   K C    
Sbjct:   346 KKHADSVAEMGEQLDNLQRVKQKLEKEKSELKMEVDDLTSNMEQTVKGKANAEKLCRTYE 405

Query:   212 ----ELRKLLDEVSPKNFE---RINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQL 264
                 E +  LDE++    +   +  KL     E + +L+++  ++S   + KT     Q+
Sbjct:   406 DHLNETKTKLDEMTRLMNDLTTQKTKLQSENGEFVRQLEEKESLISQLSRGKTS-FTQQI 464

Query:   265 EKQRRADQELKKRVLKLEFCLQEAR 289
             E+ RR  +E  K    L   LQ AR
Sbjct:   465 EELRRQLEEETKSKNALAHALQAAR 489

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 58/277 (20%), Positives = 120/277 (43%), Gaps = 19/277 (6%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKA-------KNM 82
           L++L E+ +  ++ +     EL+E+   L   E+   +  L   E E +          +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
            +EI +L++  +    RL       E+   QL+ L S+L              +  + + 
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            +L  EL+E  + L+E E R+  L +QL+ L+  +   E     L +E+ R+E  + + +
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-L 412

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
                    E+ +LL ++     + +   L   +EE+ +L++E+           + LE 
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-----------ERLEE 461

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVM 299
            LE+ R   +E ++ +   E  L + +A+   L+R+ 
Sbjct: 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 56/269 (20%), Positives = 125/269 (46%), Gaps = 20/269 (7%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
           L++L E+ +   K +  L +EL+E+R  L   ++  ++     +E E +   + + + +L
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314

Query: 90  QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
           +  LEE   RL+      E    +L+   + L   +        + +  + +  AL++EL
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Query: 150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNK 209
           +E   +L+E    +  L  +L  ++ +L+  +   + L++ + R+ + +           
Sbjct: 375 EELFEALRE---ELAELEAELAEIRNELEELKREIESLEERLERLSERLE---------- 421

Query: 210 DCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRR 269
             +L++ L E+  +  E +   L   +EE+ +L+++++ +      + KELE +L + + 
Sbjct: 422 --DLKEELKELEAE-LEELQTELEELNEELEELEEQLEELRD----RLKELERELAELQE 474

Query: 270 ADQELKKRVLKLEFCLQEARAQTRKLQRV 298
             Q L+K +  LE  L    A+ R  Q V
Sbjct: 475 ELQRLEKELSSLEARLDRLEAEQRASQGV 503

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 62/295 (21%), Positives = 139/295 (47%), Gaps = 19/295 (6%)

Query: 9   SMSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK- 67
            ++  S+ ++SS+  R  +  +++L EK +   + +  L   L E+R  L   E+   + 
Sbjct: 660 VITGGSAKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717

Query: 68  ----ETLTRQ--EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121
               E L+RQ          +E E+ +L++ + + +  L       E+   +L+    +L
Sbjct: 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

Query: 122 AATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARE 181
           A  +A  +   A  +  + +  AL + LDE  + L    +    L ++L++L++ + A E
Sbjct: 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 182 SSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK 241
              + L++++  + +DI +++A      +  + +L  E+     E +       +E +  
Sbjct: 838 RRLEDLEEQIEELSEDI-ESLAAEIEELEELIEELESEL-----EALLNERASLEEALAL 891

Query: 242 LKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296
           L+ E++ +S     + +ELES+  + RR  +EL++++ +LE  L+    +   LQ
Sbjct: 892 LRSELEELSE----ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 65/285 (22%), Positives = 138/285 (48%), Gaps = 12/285 (4%)

Query: 12  TSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLT 71
           T  S +  S  A++ +  LK+L E+       +  L  ELK ++  L S E    +    
Sbjct: 653 TGGSRNKRSSLAQKRE--LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710

Query: 72  RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADAS 131
            +E E + + ++ E+  L++ LE+   RL+      E+   +L+ L+ +L   +   ++ 
Sbjct: 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 132 AASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEV 191
             +    + +   L ++       L+E E+ +    ++LD L+++L++ E  +++L+ E+
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 192 FRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA 251
             +E++I +   K       EL + L+E+  +  E + + L   + E  +L+DE+K    
Sbjct: 831 EELEEEIEELEEKLD-----ELEEELEELEKE-LEELKEELEELEAEKEELEDELK---- 880

Query: 252 HWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296
             + + +ELE +L +      ELK+ + KL   L+E  A+  +L+
Sbjct: 881 ELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 46/259 (17%), Positives = 122/259 (47%), Gaps = 6/259 (2%)

Query: 24  REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNME 83
            E+   L++L  + +  ++ + +L  EL+++++RL   E+   +     +E + + + +E
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 84  DEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCL 143
           +E+  L++ L +    ++      +    +L+ L  +L   +   DA     +S + +  
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203
            L +E++E    ++E E+++  L ++L+ L+K+L+  +   ++L+ E   +E ++ +   
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 204 KAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263
           +       EL + L E+       + + +    E + +L+ +++ +        +ELE +
Sbjct: 885 EKE-----ELEEELRELE-SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 264 LEKQRRADQELKKRVLKLE 282
            E     + E +   L+ E
Sbjct: 939 YEDTLETELEREIERLEEE 957

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 55/273 (20%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 25   EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
            ++   L++L E+ +   + +  L   L+E+   L S E+   K     +E E K + +++
Sbjct: 734  QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793

Query: 85   EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
            E+ +L++ LEE   RL A     E    + + L  ++   +   +         + +   
Sbjct: 794  ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853

Query: 145  LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204
            L KEL+E    L+E E     L  +L  L+++ +  E   ++L+ E+  ++++I +   +
Sbjct: 854  LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913

Query: 205  AGVNKDCELRKLLDEVSPKNFERINKLLVVKDE-----EIHKLKDEIKIMSA-------- 251
                +     + L+   P+  E + +      E     EI +L++EI+ +          
Sbjct: 914  L--EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEE 971

Query: 252  --HWKLKTKELESQLEKQRRADQELKKRVLKLE 282
                + + +EL+SQ E    A ++L + + +L+
Sbjct: 972  YEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 51/276 (18%), Positives = 115/276 (41%), Gaps = 18/276 (6%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
             E+   +  L +        V  L   + ++   L   E    +     +EAE +    
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E EI +L+  +E+    L+A           LD LR++L      A       +S + + 
Sbjct: 781 EAEIEELEAQIEQLKEELKALR-------EALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            A  + L++    ++E  + +  L  +++ L++ ++  ES  + L +E   +E+  +  +
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA-LALL 892

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
                    ELR+L  + S      + + L    E++ +L+  ++ +    +++   L+ 
Sbjct: 893 RSELEELSEELRELESKRS-----ELRRELEELREKLAQLELRLEGL----EVRIDNLQE 943

Query: 263 QL-EKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
           +L E+     +E +    K+E   +EAR + ++L+ 
Sbjct: 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 53/255 (20%), Positives = 115/255 (45%), Gaps = 14/255 (5%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTR---LASQEQCFVKETLTRQEAEMKAKNMEDEI 86
           L+ L E+     K +  +   L+E+  +   L  +EQ  VKE +   EAE+   ++E  I
Sbjct: 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA--SLERSI 310

Query: 87  CKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALV 146
            + ++ LE+   RL       +K L +++ L  ++   +   D         + +   L 
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

Query: 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-----T 201
            EL+E +    E  D +    ++L+ L++++   +    +L++E+ R+ +++        
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 202 IAKAGVNK-DCELRKLLDEVSPK--NFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK 258
             +A +N+ + E      E+  +    E++   L   ++E++ LK+E   +        +
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

Query: 259 ELESQLEKQRRADQE 273
           EL ++ E Q RA +E
Sbjct: 491 EL-AEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 49/260 (18%), Positives = 103/260 (39%), Gaps = 30/260 (11%)

Query: 43  NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERN---GR 99
           +++    E++E+  ++   E+   +      E   + + +E+E+ +L+K LEE +     
Sbjct: 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 100 LQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159
           L+      E  + QL+   +QL+      +A     +            L+E    L E 
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE----------RLEEAEEELAEA 780

Query: 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDE 219
           E  +  L  Q++ L+++L+A   +  +L+ E+  + ++      +    +  E R    E
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL---ESLERRIAATE 837

Query: 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVL 279
                 E + + +    E+I  L  EI+           ELE  +E+     + L     
Sbjct: 838 RR---LEDLEEQIEELSEDIESLAAEIE-----------ELEELIEELESELEALLNERA 883

Query: 280 KLEFCLQEARAQTRKLQRVM 299
            LE  L   R++  +L   +
Sbjct: 884 SLEEALALLRSELEELSEEL 903

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 48/257 (18%), Positives = 123/257 (47%), Gaps = 17/257 (6%)

Query: 41  RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100
           +++ ++   ELKE+   LA  E    K     +  + + +++ED + +L++ LEE   +L
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE 160
           +           +L+ L+S+L   +          +  + +   L + L+E    L+  E
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEE-------ELEELEEELEELQERLEELEEELESLE 771

Query: 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV 220
           + + +L ++++ L++  QA +   ++L++E+   E+ +     +    +     +L  E+
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ-RRERLEQEI 830

Query: 221 SPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLK 280
                E + + +   +E++ +L++E++ +      + +EL+ +LE+     +EL+  + +
Sbjct: 831 -----EELEEEIEELEEKLDELEEELEELEK----ELEELKEELEELEAEKEELEDELKE 881

Query: 281 LEFCLQEARAQTRKLQR 297
           LE   +E   + R+L+ 
Sbjct: 882 LEEEKEELEEELRELES 898

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 37/223 (16%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 25  EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
           E +  L +   + +     +  L  ELK +R  L                   + +++E 
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831

Query: 85  EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
            I   ++ LE+   +++  +   E    +++ L   +   ++  +A      S +     
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

Query: 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204
           L  EL+E +  L+E E + + L ++L+ L++          QL+  +  +E  I     +
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELRE-------KLAQLELRLEGLEVRIDNLQER 944

Query: 205 AGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247
                  E   L  E +     +I          + +L+++IK
Sbjct: 945 LS-----EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 18/282 (6%)

Query: 13  SSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR 72
           S +     + +R     L+ L E+ +  ++ + SL +EL+ +  RL    Q     +   
Sbjct: 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718

Query: 73  QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASA 132
            E E + + +E E  KL++ LEE    L +     E    +L  L +++       D   
Sbjct: 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL--EEDLHK 776

Query: 133 ASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVF 192
                  L+       + E  + L + E+ V+R+  +L  +++ L      ++ L+ E+ 
Sbjct: 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836

Query: 193 RIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA- 251
            +++             D + +    E   K  E +N      +EE+ +L+  ++ + + 
Sbjct: 837 ELQEQR----------IDLKEQIKSIE---KEIENLNGKKEELEEELEELEAALRDLESR 883

Query: 252 --HWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291
               K +  ELE+QL +  R  +EL+ ++ K    L E +A+
Sbjct: 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 41  RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100
           R+ V  L AEL+++   +       V+E L R E        ED I +L++  E+    +
Sbjct: 474 RERVEELEAELEDLEEEVEE-----VEERLERAED---LVEAEDRIERLEERREDLEELI 525

Query: 101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ---CLALVKELDEKNSSLK 157
                T E+   + + LR + A  +A A+    +A  A+ +       V EL+ K + LK
Sbjct: 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585

Query: 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189
           E  + + R+   L  +       E  +++ + 
Sbjct: 586 ERIESLERIRTLLAAIADAEDEIERLREKREA 617

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 35/251 (13%)

Query: 72  RQEAEMKAKNMEDEICKLQKTLEERNG---RLQASACTAEKYLM---------------- 112
           R+E E K +   + + +L+  L E       L+  A  AE+Y                  
Sbjct: 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR 233

Query: 113 ------QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRL 166
                 +L+ L+ +L   +   +   A  Q  + +   L  E+ E    ++E +  +  L
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 167 GQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFE 226
             ++  L++  Q        L+ ++  +E  + +  +K       EL + L E+  K  E
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD-----ELAEELAELEEK-LE 347

Query: 227 RINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQ 286
            + + L   + E+ +L+ E++ + +      +ELE QLE  R    +L+ ++  L   ++
Sbjct: 348 ELKEELESLEAELEELEAELEELESRL----EELEEQLETLRSKVAQLELQIASLNNEIE 403

Query: 287 EARAQTRKLQR 297
              A+  +L+ 
Sbjct: 404 RLEARLERLED 414

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 38/194 (19%), Positives = 89/194 (45%), Gaps = 12/194 (6%)

Query: 29  LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-----ETLTRQEAEMKAKNME 83
            L++L E   S  + + ++ +ELKE+  R+   E+   K       L  + +  +   ++
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797

Query: 84  DEICKLQKTLEERNGRLQA-----SACTAEKYLMQ--LDGLRSQLAATKATADASAASAQ 136
            E+ KL++ +     RL+      +  T EK  ++  +  L+ Q    K    +     +
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 137 SAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ 196
           +   +   L +EL+E  ++L++ E R+  L ++ D L+  L+  E   ++L+ ++ +  +
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

Query: 197 DIMQTIAKAGVNKD 210
            + +  AK    ++
Sbjct: 918 RLSELKAKLEALEE 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 62/283 (21%), Positives = 140/283 (49%), Gaps = 25/283 (8%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQ----EAEMKAKNMED- 84
           LK + ++ +   +    L  EL+E+   L  + +    + L  Q    E ++K  N+E+ 
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520

Query: 85  -EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCL 143
            +  +  + L+E+  +L+    + +K L +L+ L+ +LA  +   D         + +  
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD-------ELEEELA 573

Query: 144 ALVKELDEKN-SSLKEHEDRVTRLGQ------QLDNLQKDLQARESSQKQLKDEVFRIEQ 196
            L+KEL+E    S++E E+R+  L        +L + +K+L+  E   K+L++E+ +  +
Sbjct: 574 ELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633

Query: 197 DIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW--- 253
           ++ +T  +    +  EL +L  + S + +E + +  +    E+  L+ E++ +       
Sbjct: 634 ELAETEKRLEELRK-ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEI 692

Query: 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296
           K   ++L+ +LE++ +A +EL+K    LE  ++E R + +K +
Sbjct: 693 KKTLEKLKEELEEREKAKKELEKLEKALER-VEELREKVKKYK 734

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 61/280 (21%), Positives = 130/280 (46%), Gaps = 16/280 (5%)

Query: 25  EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNME 83
           + + L + L E  +  +  +  L  +L E+   +    +   +E     +  E++ +  E
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE 227

Query: 84  DEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCL 143
           +E+ +  + LEER   L+      E+       L+++L   ++    +    +    +  
Sbjct: 228 EELEQEIEALEERLAELEEEKERLEE-------LKARLLEIESLELEALKIREEELRELE 280

Query: 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIE------QD 197
            L++EL+EK   L+E E  +  L ++L+ L+  L+  E   ++LK    R+E      + 
Sbjct: 281 RLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340

Query: 198 IMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKT 257
           +   + +    K+ EL KLL+E   +  ER+ +L    ++ + +LK   + +    K + 
Sbjct: 341 LESELEELAEEKN-ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE-LKEEL 398

Query: 258 KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
            EL + LE+ +   +EL+K + +LE  L+E   + +KL+ 
Sbjct: 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438

Length = 908

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 43  NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102
            V+ L AE+  +R    SQ      + L   E     + ++ +    +        +L+ 
Sbjct: 89  QVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLEL 148

Query: 103 SACTAEKYLMQLDGLRSQLAATKATADASAASAQS----------AQLQCLALVKELDEK 152
                ++   +L GL++QL A +   +  +   ++          ++L+ L L +E  E 
Sbjct: 149 ILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEA 208

Query: 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQ 186
              L   E  +  L +Q+D LQ + Q  E + ++
Sbjct: 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFRE 242

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
PRK02224	880	chromosome segregation protein; Provisional	97.99
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.84
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.33
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.96
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.93
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.92
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.58
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.38
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.88
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	95.84
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.78
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.44
PRK02224	880	chromosome segregation protein; Provisional	95.3
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.23
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.7
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.47
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.24
PRK04778	569	septation ring formation regulator EzrA; Provision	94.23
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.04
PRK04778	569	septation ring formation regulator EzrA; Provision	92.36
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.89
PRK04863	1486	mukB cell division protein MukB; Provisional	91.64
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.56
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	91.51
PRK11637	428	AmiB activator; Provisional	91.46
PRK09039	343	hypothetical protein; Validated	91.43
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.15
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.65
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.93
PRK11637	428	AmiB activator; Provisional	89.66
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	89.62
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.43
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.41
PF15294	278	Leu_zip: Leucine zipper	89.4
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.11
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.38
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.03
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	88.01
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	86.66
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	86.6
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	85.69
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.06
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	83.19
PRK04863	1486	mukB cell division protein MukB; Provisional	82.94
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.53
KOG0996	1293	consensus Structural maintenance of chromosome pro	82.2
KOG0933	1174	consensus Structural maintenance of chromosome pro	81.82
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	81.18
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.1
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	80.76

>PRK02224 chromosome segregation protein; Provisional

Probab=97.99  E-value=0.014  Score=58.73  Aligned_cols=132  Identities=18%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             CCccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571           21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL  100 (310)
Q Consensus        21 ~~~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL  100 (310)
                      +...++-.++.++.++.......+-.|..++.+++.++...+.....        +.....++.....+...+++..+++
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------~~~l~~l~~~~~~l~~~~~~~~e~l  532 (880)
T PRK02224        461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------EDRIERLEERREDLEELIAERRETI  532 (880)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444457888888988888888899999999999888876665322        3333445555555555677777777


Q ss_pred             hhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhh
Q 021571          101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE  160 (310)
Q Consensus       101 ~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE  160 (310)
                      ..-....+.+-.++..|++.+.-....++.--..+..+.--+..+-+++++-++-+++.+
T Consensus       533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le  592 (880)
T PRK02224        533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE  592 (880)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777888888998888777665554444444444456666666666555555555

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.88  E-value=0.0044  Score=70.08  Aligned_cols=192  Identities=26%  Similarity=0.378  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571           43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA  122 (310)
Q Consensus        43 NVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs  122 (310)
                      .|.-+-..+++...+++.-++.+..|=-+|..+|..-+-++.|+..|++.|++..+...+-....-+.-.|+..||..|.
T Consensus      1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445556666666667778888888899999999999999999999999988888888888888889999998887


Q ss_pred             HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHH-H
Q 021571          123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-T  201 (310)
Q Consensus       123 ~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~-A  201 (310)
                      -..-+-++..+...                    +.|.+.|..+++|+++++++.+-.+--...|.-|+..++..+=. .
T Consensus      1171 ee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~ 1230 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLS 1230 (1930)
T ss_pred             HHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65544443333222                    88999999999999999999988887777777777777665542 2


Q ss_pred             HHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHH
Q 021571          202 IAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE  265 (310)
Q Consensus       202 vakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQle  265 (310)
                      .++++..+-|           +-+|.-+.-|..|++++.++..++..-..--.+...+|.+|+|
T Consensus      1231 ~~k~~~e~~~-----------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~le 1283 (1930)
T KOG0161|consen 1231 SEKKDLEKKD-----------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLE 1283 (1930)
T ss_pred             hhhccHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhH
Confidence            2222222222           3333444455666666666655543333333333334444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.84  E-value=0.041  Score=54.86  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=12.4

Q ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 021571           30 LKDLNEKKQSFRKNVVSLAAELKEVRTRL   58 (310)
Q Consensus        30 LkDL~EKK~sfRRNVvsLaaELKd~R~rL   58 (310)
                      +.+|......++..+..+-.+++.+...+
T Consensus       679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  707 (1179)
T TIGR02168       679 IEELEEKIEELEEKIAELEKALAELRKEL  707 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.33  E-value=0.21  Score=49.94  Aligned_cols=75  Identities=17%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL  100 (310)
Q Consensus        26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL  100 (310)
                      +..-+.++..+-..+...+..+.+++.+++..+...+.....-.......+.....++.++..+...+..-..++
T Consensus       682 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777888888888888877776555544433322233344444555555555554444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.18  E-value=0.33  Score=49.10  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=10.1

Q ss_pred             HHHHhHhhHHHHHHhhHHHHHHHHHH
Q 021571          263 QLEKQRRADQELKKRVLKLEFCLQEA  288 (310)
Q Consensus       263 QlekqRR~dQElKkrVlkLEfclqEa  288 (310)
                      ++++.+..-.++..++-+++-.+...
T Consensus       904 ~~~~l~~~~~~~~~~~~~l~~~~~~~  929 (1164)
T TIGR02169       904 KIEELEAQIEKKRKRLSELKAKLEAL  929 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.96  E-value=0.53  Score=47.64  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=9.1

Q ss_pred             HHHHHHHHhHhhHHHHHHhhHH
Q 021571          259 ELESQLEKQRRADQELKKRVLK  280 (310)
Q Consensus       259 ELEsQlekqRR~dQElKkrVlk  280 (310)
                      +++.++.+.+..-++++.++-.
T Consensus       466 ~~~~~l~~~~~~l~~l~~~l~~  487 (1164)
T TIGR02169       466 KYEQELYDLKEEYDRVEKELSK  487 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=96.93  E-value=0.62  Score=50.38  Aligned_cols=89  Identities=11%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC  105 (310)
Q Consensus        26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~  105 (310)
                      ++.++++|..+-.++-.+.-.+.+++++.+.++..-...-..-..-+...+.....++.++..+...+++...+|...-.
T Consensus       693 ~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~  772 (1311)
T TIGR00606       693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET  772 (1311)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888888888777655677777888888877776655432222222333333444444444444444444433333333


Q ss_pred             hHHHHHHHH
Q 021571          106 TAEKYLMQL  114 (310)
Q Consensus       106 stekyl~eL  114 (310)
                      .-++...++
T Consensus       773 ~l~~~~~~~  781 (1311)
T TIGR00606       773 LLGTIMPEE  781 (1311)
T ss_pred             HHHHHHHhH
Confidence            333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.92  E-value=0.54  Score=50.29  Aligned_cols=15  Identities=20%  Similarity=0.366  Sum_probs=8.4

Q ss_pred             hcccchhHHHHHHHH
Q 021571          252 HWKLKTKELESQLEK  266 (310)
Q Consensus       252 HW~~ktKELEsQlek  266 (310)
                      -|+.+.+.++.+++.
T Consensus       946 ~~~~~i~~le~~i~~  960 (1163)
T COG1196         946 ELEREIERLEEEIEA  960 (1163)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            456666666655443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.58  E-value=1.4  Score=47.25  Aligned_cols=76  Identities=25%  Similarity=0.351  Sum_probs=53.4

Q ss_pred             hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhh
Q 021571           28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS  103 (310)
Q Consensus        28 PLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as  103 (310)
                      +-|..|.++-......+..+-.+++++.+.+.+-+.....-......++........++..+...+++-..++...
T Consensus       667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  742 (1163)
T COG1196         667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEEL  742 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556788888888999999999999999988888887777776666666665555555555544444444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.38  E-value=0.98  Score=46.40  Aligned_cols=127  Identities=22%  Similarity=0.231  Sum_probs=88.2

Q ss_pred             CCCCCCccccChhhhhh---HHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHH-
Q 021571           17 SSSSVPAREIDPLLKDL---NEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKT-   92 (310)
Q Consensus        17 ~sss~~~~elDPLLkDL---~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~-   92 (310)
                      ....+|..|+--+.+.|   .-.+-.|..++--|-.|++++|.++...++.....=..-...+.+.-+.|.|++-+.-. 
T Consensus        85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~  164 (546)
T KOG0977|consen   85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI  164 (546)
T ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence            34455666665554444   44788899999999999999999999998877654444455667777777777766533 


Q ss_pred             --HhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 021571           93 --LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN  153 (310)
Q Consensus        93 --Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~  153 (310)
                        |+|...-|          ..|.+.||.+|..++.--|+-...-.-.|.+|-.|+.+|+-..
T Consensus       165 ~~le~e~~~L----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  165 KALEDELKRL----------KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              33333333          3566667777777766666666666778889999998887644

>TIGR00606 rad50 rad50

Probab=95.88  E-value=3.4  Score=44.90  Aligned_cols=88  Identities=11%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhch------HHHHHHHHHHHhhhhhhhhhhhh--hHHHH
Q 021571           39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM------EDEICKLQKTLEERNGRLQASAC--TAEKY  110 (310)
Q Consensus        39 sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~M------E~Ei~kLqK~Leek~~QL~as~~--steky  110 (310)
                      .++..+..+-.++.++...|...+..+.+-......++.-.+.|      ..||..+++.+++-...+..+.+  +.+..
T Consensus       748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el  827 (1311)
T TIGR00606       748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV  827 (1311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence            34555555555555666556555555555444444443333333      55666666666655444443332  23334


Q ss_pred             HHHHhhHhhhHhHHHH
Q 021571          111 LMQLDGLRSQLAATKA  126 (310)
Q Consensus       111 l~eLD~lRSQLs~tqA  126 (310)
                      -.+++.+..++..+..
T Consensus       828 e~ei~~~~~el~~l~~  843 (1311)
T TIGR00606       828 NQEKQEKQHELDTVVS  843 (1311)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=95.84  E-value=0.065  Score=50.72  Aligned_cols=87  Identities=26%  Similarity=0.394  Sum_probs=61.1

Q ss_pred             ccccChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571           23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA  102 (310)
Q Consensus        23 ~~elDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a  102 (310)
                      .+++=+-|+++-|   .||+.+|+-| -|-.=++.|.-|=..+-          .+.-.||+.+..+++.+.+|...+..
T Consensus        79 ~r~lk~~l~evEe---kyrkAMv~na-QLDNek~~l~yqvd~Lk----------d~lee~eE~~~~~~re~~eK~~elEr  144 (302)
T PF09738_consen   79 LRDLKDSLAEVEE---KYRKAMVSNA-QLDNEKSALMYQVDLLK----------DKLEELEETLAQLQREYREKIRELER  144 (302)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHh-hhchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444   5999999876 36555666655544443          23446999999999999999988877


Q ss_pred             hhhhHHHHHHHHhhHhhhHhH
Q 021571          103 SACTAEKYLMQLDGLRSQLAA  123 (310)
Q Consensus       103 s~~stekyl~eLD~lRSQLs~  123 (310)
                      ---.....-.|+|.||.+|..
T Consensus       145 ~K~~~d~L~~e~~~Lre~L~~  165 (302)
T PF09738_consen  145 QKRAHDSLREELDELREQLKQ  165 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            766666677888888888863

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.78  E-value=1.3  Score=39.47  Aligned_cols=76  Identities=24%  Similarity=0.370  Sum_probs=42.2

Q ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhh--------------hhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571           29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLA--------------SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE   94 (310)
Q Consensus        29 LLkDL~EKK~sfRRNVvsLaaELKd~R~rLa--------------sQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Le   94 (310)
                      .+.+++.-|-.+--.+-.+-.|+.+.|.++.              .--..+-.++..|-..+.+..++.+|+.-+.+--+
T Consensus        62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he  141 (312)
T PF00038_consen   62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence            3444544444444444455555555555443              33345556666667777777777777776666555


Q ss_pred             hhhhhhhhhh
Q 021571           95 ERNGRLQASA  104 (310)
Q Consensus        95 ek~~QL~as~  104 (310)
                      +.-..|++.+
T Consensus       142 eEi~~L~~~~  151 (312)
T PF00038_consen  142 EEIEELREQI  151 (312)
T ss_dssp             HHHHTTSTT-
T ss_pred             hhhhhhhhcc
Confidence            5555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.44  E-value=3.3  Score=41.63  Aligned_cols=97  Identities=22%  Similarity=0.297  Sum_probs=58.3

Q ss_pred             cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC  105 (310)
Q Consensus        26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~  105 (310)
                      +.--++++..+...+......+-++++++..++..-++.|..+.-.+  ++. -..+|.++..+...+.+...++.--++
T Consensus       214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~--~~~-r~~Le~ei~~le~e~~e~~~~l~~l~~  290 (650)
T TIGR03185       214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDL--FEE-REQLERQLKEIEAARKANRAQLRELAA  290 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445556666666666777777777777777777777776655432  222 235677777777777777777764443


Q ss_pred             hHH--HHH-HHHhhHhhhHhHHH
Q 021571          106 TAE--KYL-MQLDGLRSQLAATK  125 (310)
Q Consensus       106 ste--kyl-~eLD~lRSQLs~tq  125 (310)
                      ..=  -|+ +-++.++.|+..-+
T Consensus       291 ~~~p~~l~~~ll~~~~~q~~~e~  313 (650)
T TIGR03185       291 DPLPLLLIPNLLDSTKAQLQKEE  313 (650)
T ss_pred             ccCCHhhhHHHHHHHHHHHHHHH
Confidence            221  122 45556666665544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK02224 chromosome segregation protein; Provisional

Probab=95.30  E-value=3.9  Score=41.61  Aligned_cols=18  Identities=33%  Similarity=0.647  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHhhhhhhhh
Q 021571           46 SLAAELKEVRTRLASQEQ   63 (310)
Q Consensus        46 sLaaELKd~R~rLasQEq   63 (310)
                      .+..+++....++...+.
T Consensus       255 ~l~~~~~~l~~~i~~~e~  272 (880)
T PRK02224        255 TLEAEIEDLRETIAETER  272 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.23  E-value=2.1  Score=38.21  Aligned_cols=137  Identities=18%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 021571           30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK  109 (310)
Q Consensus        30 LkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek  109 (310)
                      |.+||.+=.+|=--|-.|=++=+.....+..-......++     .. -....|.||..|.+.+.+-..+-..-..-...
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~-----~~-~~~~ye~el~~lr~~id~~~~eka~l~~e~~~   79 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEV-----SR-IKEMYEEELRELRRQIDDLSKEKARLELEIDN   79 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccC-----cc-cccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence            4455655555555555554444444333332222221111     11 11224555555555554444333333333444


Q ss_pred             HHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571          110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA  179 (310)
Q Consensus       110 yl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqa  179 (310)
                      +..+++++|.++....       +-=..+.-....|-+.+++-+..-..=+-++..|.++|+-+.+.++.
T Consensus        80 l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee  142 (312)
T PF00038_consen   80 LKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE  142 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence            5555555555554431       11123333444455666666665566666666666666666655543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.70  E-value=9.6  Score=43.04  Aligned_cols=202  Identities=25%  Similarity=0.287  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHH-----hhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-------HHH
Q 021571           47 LAAELKEVRTRLASQEQCFVKET-----LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL-------MQL  114 (310)
Q Consensus        47 LaaELKd~R~rLasQEq~~akEt-----~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl-------~eL  114 (310)
                      +.+||.++..+|.++++.+-++=     ..-++++.++.--|++..+|...+.++-++|.    .+.++.       .++
T Consensus       466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele----~~q~~~~~~~~~~~kv  541 (1317)
T KOG0612|consen  466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE----DAQKKNDNAADSLEKV  541 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Confidence            78899999999999888887521     11234444444434333333333333333322    123332       334


Q ss_pred             hhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHH---H
Q 021571          115 DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE---V  191 (310)
Q Consensus       115 D~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDe---V  191 (310)
                      ..+|-+|..+..  ++.|.++...  .|....+++...-.++.+   .+.-+++-+..|+.+...-.=-.++++.+   .
T Consensus       542 ~~~rk~le~~~~--d~~~e~~~~~--kl~~~~~e~~~~iq~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~  614 (1317)
T KOG0612|consen  542 NSLRKQLEEAEL--DMRAESEDAG--KLRKHSKELSKQIQQELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKE  614 (1317)
T ss_pred             HHHHHHHHHhhh--hhhhhHHHHh--hHhhhhhhhhHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555544332  3333333222  233333333333333332   45555666666665544333333444443   2


Q ss_pred             HHHHHHHHHHHHHhc----------CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHH
Q 021571          192 FRIEQDIMQTIAKAG----------VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE  261 (310)
Q Consensus       192 lRIE~dIm~Avakag----------~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELE  261 (310)
                      .+-.++|-+.++-+.          ....++++|+.+ .---|-|.           |.-.-.+  -+-+||..+-|.++
T Consensus       615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~-----------~~~~ek~--~~e~~~e~~lk~~q  680 (1317)
T KOG0612|consen  615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQER-----------ISDSEKE--ALEIKLERKLKMLQ  680 (1317)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH-----------HHHHHHH--HHHHHHHHHHHHHH
Confidence            233333333332221          233455555443 22222222           2222222  56788999988888


Q ss_pred             HHHHHhHhhHHH
Q 021571          262 SQLEKQRRADQE  273 (310)
Q Consensus       262 sQlekqRR~dQE  273 (310)
                      .+++.-+-.-+.
T Consensus       681 ~~~eq~~~E~~~  692 (1317)
T KOG0612|consen  681 NELEQENAEHHR  692 (1317)
T ss_pred             HHHHHHHHHHHH
Confidence            888765544333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.47  E-value=6.9  Score=40.45  Aligned_cols=53  Identities=26%  Similarity=0.428  Sum_probs=42.8

Q ss_pred             hhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q 021571          245 EIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR  297 (310)
Q Consensus       245 eiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr  297 (310)
                      +++-..+||..=--.|.-..|..++--++|+.++..+|=++||-|++--||+.
T Consensus       347 ~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~  399 (546)
T PF07888_consen  347 ELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEK  399 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788865444666667888888899999999999999999999888875

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.24  E-value=7.8  Score=40.10  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhh
Q 021571           91 KTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADAS  131 (310)
Q Consensus        91 K~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaS  131 (310)
                      .+|.+...++......+.++..|++.|+.||..++....||
T Consensus       262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaS  302 (546)
T PF07888_consen  262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQAS  302 (546)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444556677888888888777766555

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.23  E-value=6.6  Score=39.24  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             hhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh----------hHHHHHHHHhhHhhhHhHHH
Q 021571           56 TRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC----------TAEKYLMQLDGLRSQLAATK  125 (310)
Q Consensus        56 ~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~----------stekyl~eLD~lRSQLs~tq  125 (310)
                      .++..---.|.+|-..++.+++....+++-+..+.+...+-...+.--.-          ...++-.+|..+..++....
T Consensus       289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~  368 (569)
T PRK04778        289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT  368 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445678888888888888888888877776654433333322222          24445566666666666433


Q ss_pred             H
Q 021571          126 A  126 (310)
Q Consensus       126 A  126 (310)
                      .
T Consensus       369 ~  369 (569)
T PRK04778        369 E  369 (569)
T ss_pred             H
Confidence            3

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.04  E-value=6.6  Score=41.14  Aligned_cols=71  Identities=24%  Similarity=0.382  Sum_probs=41.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHH----------------------HhhhchHHHHHHHHHHHh
Q 021571           37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAE----------------------MKAKNMEDEICKLQKTLE   94 (310)
Q Consensus        37 K~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE----------------------~kak~ME~Ei~kLqK~Le   94 (310)
                      ++.=|.++.+|---|++-|..-++-|..+..|--.|+.+|                      .|.+.||.|+.+|+..|.
T Consensus       483 Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk  562 (697)
T PF09726_consen  483 RQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK  562 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666665566555555555555555555544332                      345567777777777777


Q ss_pred             hhhhhhhhhhhhH
Q 021571           95 ERNGRLQASACTA  107 (310)
Q Consensus        95 ek~~QL~as~~st  107 (310)
                      .+.+|++.--...
T Consensus       563 ~kee~~~~~e~~~  575 (697)
T PF09726_consen  563 QKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766544433

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.36  E-value=13  Score=37.18  Aligned_cols=241  Identities=20%  Similarity=0.236  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571           45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT  124 (310)
Q Consensus        45 vsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~t  124 (310)
                      +.+..++++.+.++..=......  ..=+.|+.+...+++.|..|...|+--..--...-....++-..|+.++.+...+
T Consensus       252 ~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l  329 (569)
T PRK04778        252 LDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL  329 (569)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45667777777766553332221  1225567777777777777766665433222222222222222233333333222


Q ss_pred             HHhhHhhHHh----------HHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHH
Q 021571          125 KATADASAAS----------AQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI  194 (310)
Q Consensus       125 qATAeaSaaS----------AqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRI  194 (310)
                      ..--+--..|          ....+=+.-.+-+.+.+-...+.++......+.++++.+.+.+..=+-.|..+++.+-.+
T Consensus       330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L  409 (569)
T PRK04778        330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL  409 (569)
T ss_pred             HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221222          344444455555555555555666666667777777777777777777788888888888


Q ss_pred             HHHHHHHHHHhcC--CchhHHHHhhhc-cCcchHHhhhhhhccchhHhhhhhhhhHhhhhhc---ccchhHHHHHHHHhH
Q 021571          195 EQDIMQTIAKAGV--NKDCELRKLLDE-VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW---KLKTKELESQLEKQR  268 (310)
Q Consensus       195 E~dIm~Avakag~--~~~~El~kil~e-vspkn~e~inkll~~kD~eIakLrdeiri~SaHW---~~ktKELEsQlekqR  268 (310)
                      ..+..+|-.+...  .+-.++...+.. --|.--+..-..+..-.++|.+|..+|.=-.-+-   ...-.+.+..++.-.
T Consensus       410 rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~  489 (569)
T PRK04778        410 RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE  489 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888888766542  222223222222 1343334444444444566666666554200000   001233344444444


Q ss_pred             hhHHHHHHhhHHHHHHHHH
Q 021571          269 RADQELKKRVLKLEFCLQE  287 (310)
Q Consensus       269 R~dQElKkrVlkLEfclqE  287 (310)
                      ..-.+|-.-+..+|-.+|.
T Consensus       490 ~q~~dL~~~a~~lE~~Iqy  508 (569)
T PRK04778        490 EETEELVENATLTEQLIQY  508 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555666667777777777

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.89  E-value=0.047  Score=57.05  Aligned_cols=222  Identities=27%  Similarity=0.359  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHh
Q 021571           43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA  122 (310)
Q Consensus        43 NVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs  122 (310)
                      .+..|-..+|+..+++..-+.-+.-|-..|.-||..-+.|..|+-.|...|++..+.-.|..-.--+.=.||..||.+|.
T Consensus        33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LE  112 (859)
T PF01576_consen   33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLE  112 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45556678889999999988999999999999999999999999999999988777655444444445589999999997


Q ss_pred             HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcch-hhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571          123 ATKATADASAASAQSAQLQCLALVKELDEKNSSL-KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT  201 (310)
Q Consensus       123 ~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sL-kEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A  201 (310)
                      -+....++..+                     .| +-|-+.|..|.+|+|++++.-..=+-.-.+|..||-.+-.++ +.
T Consensus       113 e~~~~~e~~~~---------------------~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~  170 (859)
T PF01576_consen  113 EANLQHEATLA---------------------ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS  170 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence            65554444332                     12 568999999999999999998887777778888887777766 44


Q ss_pred             HHHhcCCchhHHHHh---hhccCcchHHhhhhhhccchhHhhhhhhhh----------HhhhhhcccchhHHHHHHHHhH
Q 021571          202 IAKAGVNKDCELRKL---LDEVSPKNFERINKLLVVKDEEIHKLKDEI----------KIMSAHWKLKTKELESQLEKQR  268 (310)
Q Consensus       202 vakag~~~~~El~ki---l~evspkn~e~inkll~~kD~eIakLrdei----------ri~SaHW~~ktKELEsQlekqR  268 (310)
                      +.++..+.+--..++   |.++.-+ ++.+++.++-=....++|..||          .--...+...-.-|++||+--+
T Consensus       171 ~~k~k~~~Ek~~K~lE~qL~El~~k-lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk  249 (859)
T PF01576_consen  171 LQKAKQEAEKKRKQLEAQLNELQAK-LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELK  249 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            445543332222111   1122111 2222222221112222333332          2223333333445788888766


Q ss_pred             hhHHHHHHhhHHHHHHHHH
Q 021571          269 RADQELKKRVLKLEFCLQE  287 (310)
Q Consensus       269 R~dQElKkrVlkLEfclqE  287 (310)
                      +.-++-.+....|+--++.
T Consensus       250 ~~leeEtr~k~~L~~~l~~  268 (859)
T PF01576_consen  250 RQLEEETRAKQALEKQLRQ  268 (859)
T ss_dssp             -------------------
T ss_pred             HHHHhHhhhhhhhHHHHHH
Confidence            6655555554455444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.64  E-value=29  Score=39.58  Aligned_cols=81  Identities=23%  Similarity=0.352  Sum_probs=49.4

Q ss_pred             HhHhHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh--hhHhhh---hhcccch
Q 021571          185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD--EIKIMS---AHWKLKT  257 (310)
Q Consensus       185 kQLKDeVlRIE~dIm~Avakag--~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrd--eiri~S---aHW~~kt  257 (310)
                      .++..++...|+...++=+...  ......+..+...|+|.+--+--+         ..|++  +.+++.   +-|+.+-
T Consensus       452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  522 (1486)
T PRK04863        452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVAR---------ELLRRLREQRHLAEQLQQLRMRL  522 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH---------HHHHHhHHHHHHHHhhHHHHHHH
Confidence            4455556666665555444433  345667777888888877543222         22221  233333   4688999


Q ss_pred             hHHHHHHHHhHhhHHHH
Q 021571          258 KELESQLEKQRRADQEL  274 (310)
Q Consensus       258 KELEsQlekqRR~dQEl  274 (310)
                      .+||..++.|+++.+=+
T Consensus       523 ~~l~~~~~~q~~~~~~~  539 (1486)
T PRK04863        523 SELEQRLRQQQRAERLL  539 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998876533

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.56  E-value=3  Score=39.51  Aligned_cols=72  Identities=25%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhH
Q 021571           83 EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR  162 (310)
Q Consensus        83 E~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~r  162 (310)
                      ..||....+.+++...||.......+..-.+...++++++.++.                      .-+++.....+|  
T Consensus       217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~----------------------~~~~~r~~t~~E--  272 (312)
T smart00787      217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK----------------------KLEQCRGFTFKE--  272 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhcCCCCHHH--
Confidence            33444444445555555555444444444444444444433222                      112233344333  


Q ss_pred             hhhhHHHHHhHHHHHh
Q 021571          163 VTRLGQQLDNLQKDLQ  178 (310)
Q Consensus       163 V~~LgEQLD~LQKdLq  178 (310)
                      |++|..+++.||+-+-
T Consensus       273 i~~Lk~~~~~Le~l~g  288 (312)
T smart00787      273 IEKLKEQLKLLQSLTG  288 (312)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            6778888888877543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=91.51  E-value=3.4  Score=37.07  Aligned_cols=93  Identities=28%  Similarity=0.406  Sum_probs=74.4

Q ss_pred             hchHHHHHHHHHHHhhhhhhhhhhhhhHH-------HHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 021571           80 KNMEDEICKLQKTLEERNGRLQASACTAE-------KYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK  152 (310)
Q Consensus        80 k~ME~Ei~kLqK~Leek~~QL~as~~ste-------kyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK  152 (310)
                      ..+|.||+..+.-+++-..+|..+-+...       +-..++..|+.-|..++.+.+..-..+..+|       .+|.+|
T Consensus        70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ-------~el~eK  142 (188)
T PF05335_consen   70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ-------QELAEK  142 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            46788888888888888888877655444       3557777777777777777776666666665       578999


Q ss_pred             hcchhhhhhHhhhhHHHHHhHHHHHhh
Q 021571          153 NSSLKEHEDRVTRLGQQLDNLQKDLQA  179 (310)
Q Consensus       153 ~~sLkEhE~rV~~LgEQLD~LQKdLqa  179 (310)
                      +..|..=..||..|..||.....|++.
T Consensus       143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~  169 (188)
T PF05335_consen  143 TQLLEAAKRRVEELQRQLQAARADYEK  169 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999874

>PRK11637 AmiB activator; Provisional

Probab=91.46  E-value=13  Score=35.41  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=13.8

Q ss_pred             HHHHHHhcCCchhHHHHhhhccCcchHHh
Q 021571          199 MQTIAKAGVNKDCELRKLLDEVSPKNFER  227 (310)
Q Consensus       199 m~Avakag~~~~~El~kil~evspkn~e~  227 (310)
                      +.+..+.|.. + -|.=|++.-+|..|.+
T Consensus       130 lra~Y~~g~~-~-~l~vLl~a~~~~~~~r  156 (428)
T PRK11637        130 LDAAFRQGEH-T-GLQLILSGEESQRGER  156 (428)
T ss_pred             HHHHHHcCCC-c-HHHHHhcCCChhHHHH
Confidence            5566666632 2 2444555555545543

>PRK09039 hypothetical protein; Validated

Probab=91.43  E-value=13  Score=35.33  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=18.2

Q ss_pred             hhhhhhhcchhhhhhHhhhhHHHHHhHHHH
Q 021571          147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKD  176 (310)
Q Consensus       147 keL~eK~~sLkEhE~rV~~LgEQLD~LQKd  176 (310)
                      .+|.+......|---.|..|..|+..|...
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            556665555555555666666666666554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.15  E-value=0.063  Score=56.15  Aligned_cols=223  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHH
Q 021571           65 FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA  144 (310)
Q Consensus        65 ~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~  144 (310)
                      +-..+.++..+|.+.|.+|.++..|+..+++-+.++........++-.|+++|..+|.-...+.....-.-.+...|.--
T Consensus       168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee  247 (859)
T PF01576_consen  168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE  247 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566778889999999999999999999999999999999999999999999999987766655444433444445445


Q ss_pred             HHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcch
Q 021571          145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKN  224 (310)
Q Consensus       145 L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn  224 (310)
                      +-..|++-+..-.-=.-.+..+...++.|...+..=.-+-..|...|-+...+|.++-.|....... ...-|.+.-   
T Consensus       248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~-~~EelEeaK---  323 (859)
T PF01576_consen  248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ-RTEELEEAK---  323 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh-hHHHHHHHH---
Confidence            5555555443333333344455555555544443222233333333444555555544443221111 000000000   


Q ss_pred             HHhhhhhhccchhHhhhhhhhhHhhhhhcccch-------hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHH
Q 021571          225 FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKT-------KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ  296 (310)
Q Consensus       225 ~e~inkll~~kD~eIakLrdeiri~SaHW~~kt-------KELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKlQ  296 (310)
                       .++++-|.--.+.+.    +...-.+-|+-.-       ..+-.+|++++..-.+|-|+.-+++=+|.+.+.....++
T Consensus       324 -KkL~~~L~el~e~le----~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~  397 (859)
T PF01576_consen  324 -KKLERKLQELQEQLE----EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ  397 (859)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             -HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             011111111111111    1111122232221       234467888888888999999999999998887766554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.65  E-value=19  Score=35.73  Aligned_cols=94  Identities=18%  Similarity=0.327  Sum_probs=52.4

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhhh----hhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh-------hhhhhH
Q 021571           39 SFRKNVVSLAAELKEVRTRLASQ----EQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ-------ASACTA  107 (310)
Q Consensus        39 sfRRNVvsLaaELKd~R~rLasQ----Eq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~-------as~~st  107 (310)
                      -++--+..+.+|++.-|.+|..-    ...|.-++..+..-.-+.++|.+-+..|...+...++-..       ..+...
T Consensus       113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~  192 (511)
T PF09787_consen  113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            34444555788888888877765    4445555554444444446666666655554443333221       112222


Q ss_pred             H-----------------HHHHHHhhHhhhHhHHHHhhHhhH
Q 021571          108 E-----------------KYLMQLDGLRSQLAATKATADASA  132 (310)
Q Consensus       108 e-----------------kyl~eLD~lRSQLs~tqATAeaSa  132 (310)
                      +                 .|+.+..++-.++...++..+..-
T Consensus       193 e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~  234 (511)
T PF09787_consen  193 EIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEE  234 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            2                 366667777778877777766543

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.93  E-value=34  Score=37.44  Aligned_cols=41  Identities=22%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             hhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc
Q 021571          163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG  206 (310)
Q Consensus       163 V~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag  206 (310)
                      ...+-.|++.++..++++.-   +++.+.-.++.+.-..++..|
T Consensus       727 ~~~~d~~i~~i~~~i~~~~~---~~~~~~~~le~~~~~eL~~~G  767 (1201)
T PF12128_consen  727 EAELDEQIEQIKQEIAAAKQ---EAKEQLKELEQQYNQELAGKG  767 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCC
Confidence            34455566666666666543   566677778888877775544

>PRK11637 AmiB activator; Provisional

Probab=89.66  E-value=19  Score=34.34  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 021571           46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA  102 (310)
Q Consensus        46 sLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~a  102 (310)
                      .+..+|+.+...|..-++.+..=...-...+.+....+.+|..+++.++....+|..
T Consensus        72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444333333333222223445556666666666666666666555533

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=89.62  E-value=2.2  Score=42.34  Aligned_cols=203  Identities=24%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhh--hhhhhh----h
Q 021571           31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERN--GRLQAS----A  104 (310)
Q Consensus        31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~--~QL~as----~  104 (310)
                      .+|++-|..+-..+.+|..++++++..|..|.....+.--.+          ..++..--....---  .--.++    .
T Consensus        74 ~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~  143 (424)
T PF03915_consen   74 EPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKER----------QQSAAKPVARPAAAPPPSSAPSSSSSPQ  143 (424)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhcccccccccCCCCCcccccccCcC
Confidence            346777888888999999999999999998877663221111          111110000000000  000000    0


Q ss_pred             hhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-------------hhcchhhhhhHhhhhHHHHH
Q 021571          105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-------------KNSSLKEHEDRVTRLGQQLD  171 (310)
Q Consensus       105 ~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~e-------------K~~sLkEhE~rV~~LgEQLD  171 (310)
                      ......++|+.+||.+|++.+.+-.+.........--|..-++.+..             =+++-++......+|-.++|
T Consensus       144 ~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVd  223 (424)
T PF03915_consen  144 STSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVD  223 (424)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            01111478999999999999888777666665555544443333222             01122233333444444444


Q ss_pred             hHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhh
Q 021571          172 NLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA  251 (310)
Q Consensus       172 ~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~Sa  251 (310)
                      .||--.+       +||..|           +.-|           --++|+.++.+.+.+.--..++.++.+-|..+-+
T Consensus       224 DLQD~VE-------~LRkDV-----------~~Rg-----------vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp  274 (424)
T PF03915_consen  224 DLQDLVE-------DLRKDV-----------VQRG-----------VRPSPKQLETVAKDISRASKELKKMKEYIKTEKP  274 (424)
T ss_dssp             HHHHHHH-------HHHHHH-----------HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------HHHHHH-----------HHcC-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            4443332       222222           1111           1367889999999999999999999999999999


Q ss_pred             hcccchhHHHHHHHHhHhhHHHHH
Q 021571          252 HWKLKTKELESQLEKQRRADQELK  275 (310)
Q Consensus       252 HW~~ktKELEsQlekqRR~dQElK  275 (310)
                      +|+   |-.|+.|++--+-.|.|+
T Consensus       275 ~Wk---KiWE~EL~~V~eEQqfL~  295 (424)
T PF03915_consen  275 IWK---KIWESELQKVCEEQQFLK  295 (424)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHHHHHHHH
Confidence            996   566777776655555443

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.43  E-value=25  Score=35.20  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=19.1

Q ss_pred             hhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHH
Q 021571          159 HEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVF  192 (310)
Q Consensus       159 hE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVl  192 (310)
                      -.--|..|..+|+.++..|++-.--....++..-
T Consensus       335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~  368 (522)
T PF05701_consen  335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMS  368 (522)
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHH
Confidence            3345666777777777777654444444444333

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.41  E-value=37  Score=37.16  Aligned_cols=92  Identities=25%  Similarity=0.425  Sum_probs=52.2

Q ss_pred             hhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccc
Q 021571          158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVK  235 (310)
Q Consensus       158 EhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag--~~~~~El~kil~evspkn~e~inkll~~k  235 (310)
                      --..++..+..++..|.+.|+.-+    +-+.+|.+-+.+.-.-+.+.-  .+...++..-+.++               
T Consensus       768 vD~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------  828 (1201)
T PF12128_consen  768 VDPERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDL---------------  828 (1201)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---------------
Confidence            334456666666666666655433    345556665555554444311  12222333222222               


Q ss_pred             hhHhhhhhhhhHhhhhhcccchhHHHHHHHHhH
Q 021571          236 DEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR  268 (310)
Q Consensus       236 D~eIakLrdeiri~SaHW~~ktKELEsQlekqR  268 (310)
                      ..++..|+.++....+.++.+-+++|.++...+
T Consensus       829 ~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~  861 (1201)
T PF12128_consen  829 EQELQELEQELNQLQKEVKQRRKELEEELKALE  861 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888888888888888888876654433

>PF15294 Leu_zip: Leucine zipper

Probab=89.40  E-value=4.6  Score=38.60  Aligned_cols=74  Identities=23%  Similarity=0.426  Sum_probs=57.3

Q ss_pred             HhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 021571          171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK  247 (310)
Q Consensus       171 D~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeir  247 (310)
                      +.+.+-+...+.+++-|++.|..-=|++...=.. ..-...||.+.+..  ...|-||-.+|.-|.++|.-||..+.
T Consensus       204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aekeLekKfqq--T~ay~NMk~~ltkKn~QiKeLRkrl~  277 (278)
T PF15294_consen  204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQIKELRKRLA  277 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhhHHHHhCc--cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence            4456667777888888888888777776654433 45667788888875  56799999999999999999998763

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.11  E-value=27  Score=35.19  Aligned_cols=213  Identities=19%  Similarity=0.285  Sum_probs=119.5

Q ss_pred             ccChhhhhhHHHHHHHHHhHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhh---
Q 021571           25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER---   96 (310)
Q Consensus        25 elDPLLkDL~EKK~sfRRNVvsL-----aaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek---   96 (310)
                      +++.-+.++.++-.....++..|     ...+.+.-.++-.-=..|.+|-..|+..+.....+.+-|..+.+.-..-   
T Consensus       249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e  328 (560)
T PF06160_consen  249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE  328 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677777766666665544     2333444444444456788899999988888888777776665433222   


Q ss_pred             hhhhhhhhh-------hHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHH
Q 021571           97 NGRLQASAC-------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ  169 (310)
Q Consensus        97 ~~QL~as~~-------stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQ  169 (310)
                      -..+.-|-.       ....|-.+|..|..+......       .-..-+.--+.+...+.+=...|.+.+.....+.+.
T Consensus       329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~-------~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~  401 (560)
T PF06160_consen  329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEE-------RIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINES  401 (560)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222211       122233444444444433322       222222233455666677777788888888888888


Q ss_pred             HHhHHHHHh-hhhhhHHhHhHHHHHHHHHHHHHHHHhc-CCchhHHHHhhhcc-------------CcchHHhhhhhhcc
Q 021571          170 LDNLQKDLQ-ARESSQKQLKDEVFRIEQDIMQTIAKAG-VNKDCELRKLLDEV-------------SPKNFERINKLLVV  234 (310)
Q Consensus       170 LD~LQKdLq-aRE~SQkQLKDeVlRIE~dIm~Avakag-~~~~~El~kil~ev-------------spkn~e~inkll~~  234 (310)
                      |+.|.++-. ||+ .-..|+-.+.    +|-+-|.+.+ .|...+....+..|             .|=|.+.||+.|..
T Consensus       402 l~~L~~dE~~Ar~-~l~~~~~~l~----~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~  476 (560)
T PF06160_consen  402 LQSLRKDEKEARE-KLQKLKQKLR----EIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEE  476 (560)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence            888887643 332 2223333332    3333444444 23333333333222             47889999998888


Q ss_pred             chhHhhhhhhhhHhh
Q 021571          235 KDEEIHKLKDEIKIM  249 (310)
Q Consensus       235 kD~eIakLrdeiri~  249 (310)
                      --+.|.+|.++..-|
T Consensus       477 a~~~v~~L~~~t~~l  491 (560)
T PF06160_consen  477 AEDDVETLEEKTEEL  491 (560)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888776544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.38  E-value=31  Score=34.94  Aligned_cols=93  Identities=16%  Similarity=0.253  Sum_probs=48.6

Q ss_pred             cChhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 021571           26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC  105 (310)
Q Consensus        26 lDPLLkDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~  105 (310)
                      +|-|-.||..-....++++.     ..++-.++..-|.-+..-.......+.....++.++..+++.+++-...++....
T Consensus       184 ~~~L~~dl~~~~~~~~~~~~-----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG  258 (650)
T TIGR03185       184 IDRLAGDLTNVLRRRKKSEL-----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG  258 (650)
T ss_pred             HHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44466777764444444431     2233333333333333333333445556667777777777777777666666443


Q ss_pred             hHHHHHHHHhhHhhhHhHHHH
Q 021571          106 TAEKYLMQLDGLRSQLAATKA  126 (310)
Q Consensus       106 stekyl~eLD~lRSQLs~tqA  126 (310)
                         .+..+.+.|..++....+
T Consensus       259 ---~~~~~r~~Le~ei~~le~  276 (650)
T TIGR03185       259 ---DLFEEREQLERQLKEIEA  276 (650)
T ss_pred             ---hHHHHHHHHHHHHHHHHH
Confidence               344444555555544433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.03  E-value=2.2  Score=36.89  Aligned_cols=98  Identities=24%  Similarity=0.361  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCccccChhhhhhH-------HHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHH
Q 021571           13 SSSSSSSSVPAREIDPLLKDLN-------EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE   85 (310)
Q Consensus        13 ~~~~~sss~~~~elDPLLkDL~-------EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~E   85 (310)
                      +.++|+++.+..++++.+-.|.       -.+-.+-..|+.+-.+|...+..+...+...              ..++.|
T Consensus        59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l--------------~~l~~~  124 (194)
T PF08614_consen   59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL--------------AELEAE  124 (194)
T ss_dssp             -------------------------------------------------------HHHHH--------------HHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH--------------HHHHHH
Confidence            3334445555666677654443       3344455566666666666666665555444              345555


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHH
Q 021571           86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT  124 (310)
Q Consensus        86 i~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~t  124 (310)
                      +..|+..+.+..+.|..-....+-.-.|+.-|.-++...
T Consensus       125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~  163 (194)
T PF08614_consen  125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML  163 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555566667777776655443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=88.01  E-value=64  Score=38.18  Aligned_cols=47  Identities=32%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             hHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhHHHHHHhhHHHHHHHHH
Q 021571          237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQE  287 (310)
Q Consensus       237 ~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~dQElKkrVlkLEfclqE  287 (310)
                      .+++.+...|+=++++    -++|+..||..|.+-.+++|..-.|+=-+.+
T Consensus      1090 ~~~~~l~k~i~eL~~~----i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEAR----IKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777778777775    4788888898888888888877666544433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=86.66  E-value=50  Score=35.53  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             hHHhhhhhhccchhHhhhh-------hhhhHhhhhhcccch---hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHh
Q 021571          224 NFERINKLLVVKDEEIHKL-------KDEIKIMSAHWKLKT---KELESQLEKQRRADQELKKRVLKLEFCLQEARAQ  291 (310)
Q Consensus       224 n~e~inkll~~kD~eIakL-------rdeiri~SaHW~~kt---KELEsQlekqRR~dQElKkrVlkLEfclqEaRsq  291 (310)
                      +-+.+.+++..||..|+.|       .+||.-|-..-..=+   -.+.++++-++-..--+|-++=.++.=|...-+.
T Consensus       225 ~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E  302 (775)
T PF10174_consen  225 ETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSE  302 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777664       666666643332222   2455667767666666776666655555544433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=86.60  E-value=75  Score=37.51  Aligned_cols=217  Identities=24%  Similarity=0.297  Sum_probs=120.9

Q ss_pred             HhHHHHHHHHHHHHhhhh----hhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH----HHHH
Q 021571           42 KNVVSLAAELKEVRTRLA----SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK----YLMQ  113 (310)
Q Consensus        42 RNVvsLaaELKd~R~rLa----sQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stek----yl~e  113 (310)
                      ..+-+|-+|....+..|.    .++.+---++.+|+--|.+.+.++.++.+|.+.|+++..+++.....-++    |..-
T Consensus       766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~  845 (1822)
T KOG4674|consen  766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL  845 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            344455555555555543    23333444667888888999999999999999999999999998877665    4445


Q ss_pred             HhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhh----------h--hcchhhhhhHhhhhHHHHHhHHHHHhhhh
Q 021571          114 LDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE----------K--NSSLKEHEDRVTRLGQQLDNLQKDLQARE  181 (310)
Q Consensus       114 LD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~e----------K--~~sLkEhE~rV~~LgEQLD~LQKdLqaRE  181 (310)
                      +|.+-+-+.-+..--..----......+-..|-|+|-.          +  +.-..--++-+....+|...|...|....
T Consensus       846 i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~  925 (1822)
T KOG4674|consen  846 VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDAL  925 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443322211000000011222233333333322          1  11111112334444556666666666666


Q ss_pred             hhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHH
Q 021571          182 SSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE  261 (310)
Q Consensus       182 ~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELE  261 (310)
                      .--.|+++++...|.-+..-.        +++-+...++..+=-...+++-.+ -++|..|+++|-.++.--.+-+|..|
T Consensus       926 s~i~~yqe~~~s~eqsl~~~k--------s~lde~~~~~ea~ie~~~~k~tsl-E~~ls~L~~~~~~l~~e~~~~~k~~e  996 (1822)
T KOG4674|consen  926 SQIREYQEEYSSLEQSLESVK--------SELDETRLELEAKIESLHKKITSL-EEELSELEKEIENLREELELSTKGKE  996 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccchh
Confidence            666677777777766554433        333333333333322333333333 35677888888888877777777777


Q ss_pred             HHHHHh
Q 021571          262 SQLEKQ  267 (310)
Q Consensus       262 sQlekq  267 (310)
                      .++.-.
T Consensus       997 ~~~~~~ 1002 (1822)
T KOG4674|consen  997 DKLLDL 1002 (1822)
T ss_pred             hhHHHH
Confidence            765543

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.69  E-value=51  Score=34.71  Aligned_cols=57  Identities=25%  Similarity=0.442  Sum_probs=44.4

Q ss_pred             HHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHH
Q 021571          145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT  201 (310)
Q Consensus       145 L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~A  201 (310)
                      +.+.+.....-+.+-..++..+.++++.+.+.+..=.-...++++.+.-++..|...
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  443 (908)
T COG0419         387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL  443 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566667777888889999999999877776666678888899999999883

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.06  E-value=40  Score=32.96  Aligned_cols=157  Identities=24%  Similarity=0.319  Sum_probs=93.6

Q ss_pred             CCCCCCCCCCccccChhhhhhHHHHH-------HHHHhHHHHHHHHHHHHhh------hhhhhhHHHHHHhhHH------
Q 021571           13 SSSSSSSSVPAREIDPLLKDLNEKKQ-------SFRKNVVSLAAELKEVRTR------LASQEQCFVKETLTRQ------   73 (310)
Q Consensus        13 ~~~~~sss~~~~elDPLLkDL~EKK~-------sfRRNVvsLaaELKd~R~r------LasQEq~~akEt~tRk------   73 (310)
                      +..+|||+++.-.+=+.+.-|..+--       .+|.-+..|..|++.+|.-      =|.||.-|.-=+.-++      
T Consensus        12 ~~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~k   91 (310)
T PF09755_consen   12 AGMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKK   91 (310)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555544333       3566677888888888853      3556666655555443      


Q ss_pred             HHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-----HHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhh
Q 021571           74 EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM-----QLDGLRSQLAATKATADASAASAQSAQLQCLALVKE  148 (310)
Q Consensus        74 ~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~-----eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~ke  148 (310)
                      +-|.=|.++|-|=.-|-..|.-|-.||+.--+..|.-|.     .++.|+.+|....  ++..+-....-+|.+    ..
T Consensus        92 eKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le--~e~~~~q~~le~Lr~----EK  165 (310)
T PF09755_consen   92 EKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE--KEKSAKQEELERLRR----EK  165 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH----HH
Confidence            344556677777777777788888888877776666552     2566666665432  222222212222222    22


Q ss_pred             hhhhhcchhhhhhHhhhhHHHHHhHHH
Q 021571          149 LDEKNSSLKEHEDRVTRLGQQLDNLQK  175 (310)
Q Consensus       149 L~eK~~sLkEhE~rV~~LgEQLD~LQK  175 (310)
                      .+=.|-.=.|-|.=||+|+-|.|.|-.
T Consensus       166 VdlEn~LE~EQE~lvN~L~Kqm~~l~~  192 (310)
T PF09755_consen  166 VDLENTLEQEQEALVNRLWKQMDKLEA  192 (310)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233455557888999999999998754

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=83.19  E-value=41  Score=31.56  Aligned_cols=38  Identities=11%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CchhHHHHhhhccCcchHHhhhhhhccc-hhHhhhhhhh
Q 021571          208 NKDCELRKLLDEVSPKNFERINKLLVVK-DEEIHKLKDE  245 (310)
Q Consensus       208 ~~~~El~kil~evspkn~e~inkll~~k-D~eIakLrde  245 (310)
                      ..-.+-..+-.+.+|.=|...-++..-+ +-.|+.++.+
T Consensus       160 ~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~  198 (239)
T COG1579         160 ELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGR  198 (239)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCC
Confidence            3344455666777777777776666665 7777776664

>PRK04863 mukB cell division protein MukB; Provisional

Probab=82.94  E-value=95  Score=35.65  Aligned_cols=49  Identities=16%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             hhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHH
Q 021571          150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI  198 (310)
Q Consensus       150 ~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dI  198 (310)
                      .+...-+.+.+..+..+.++++.+++.+..-.....++..++...+..|
T Consensus       372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i  420 (1486)
T PRK04863        372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV  420 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555666666666666665554444455555666665555

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.53  E-value=35  Score=30.41  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             HHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhh
Q 021571          112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED  161 (310)
Q Consensus       112 ~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~  161 (310)
                      ..++..-..|.++..--+-+-.-+..+.-.|-.|=.+|+.-.++|+..|-
T Consensus       113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen  113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            34445555555555544444444555555666666666665555554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.20  E-value=1e+02  Score=35.39  Aligned_cols=246  Identities=22%  Similarity=0.295  Sum_probs=113.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHH-HHHhhHHHHHHhhhchHHHHHHHHHHHhh-------hhhhhhhhhhh
Q 021571           35 EKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-KETLTRQEAEMKAKNMEDEICKLQKTLEE-------RNGRLQASACT  106 (310)
Q Consensus        35 EKK~sfRRNVvsLaaELKd~R~rLasQEq~~a-kEt~tRk~AE~kak~ME~Ei~kLqK~Lee-------k~~QL~as~~s  106 (310)
                      -|.-.+..-.-++..+||+-.-+...-....+ ++..-++..+.+++........+++.+.+       +-++|.--..-
T Consensus       334 ~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k  413 (1293)
T KOG0996|consen  334 AKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSK  413 (1293)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666655542222221 12222234445554444444444444433       22333344444


Q ss_pred             HHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhH----hhhhHHHHHhHHHHHhhhhh
Q 021571          107 AEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR----VTRLGQQLDNLQKDLQARES  182 (310)
Q Consensus       107 tekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~r----V~~LgEQLD~LQKdLqaRE~  182 (310)
                      ..|.-++++..|...+.....-+-+--.-+--|.---.|.+.+..-+..|.+.-+-    -..+.+..+-+++.|.--..
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~  493 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK  493 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            45555666666666655443332222211111211112222222222223222221    12233344444444444444


Q ss_pred             hHHhHhHH--HHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHH
Q 021571          183 SQKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL  260 (310)
Q Consensus       183 SQkQLKDe--VlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKEL  260 (310)
                      .-.+.+-|  |.+-|-|||---.-.|..+.-++.+-|...+-.+-|+-+.+..++ .+|..           |+.+-++.
T Consensus       494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k-~~l~~-----------~k~e~~~~  561 (1293)
T KOG0996|consen  494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLK-EELPS-----------LKQELKEK  561 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh-----------HHHHHHHH
Confidence            44445555  566667777766666777777777766666655555544333332 33444           44445555


Q ss_pred             HHHHHHhHhhHHHHHH-------hhHHHHHHHHHHHHhh
Q 021571          261 ESQLEKQRRADQELKK-------RVLKLEFCLQEARAQT  292 (310)
Q Consensus       261 EsQlekqRR~dQElKk-------rVlkLEfclqEaRsqt  292 (310)
                      +..|++-|-+.+.|+.       ||--+-=.+|..||+-
T Consensus       562 ~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~  600 (1293)
T KOG0996|consen  562 EKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN  600 (1293)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            5555555555554333       3333334456666653

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.82  E-value=86  Score=35.50  Aligned_cols=186  Identities=22%  Similarity=0.321  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhh
Q 021571           82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED  161 (310)
Q Consensus        82 ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~  161 (310)
                      .+.|+.-.|+.|++-..||..--.+..+|    ++|+.||...+               +=++|.+. +-..++-.---+
T Consensus       682 ~~~~~~~~q~el~~le~eL~~le~~~~kf----~~l~~ql~l~~---------------~~l~l~~~-r~~~~e~~~~~~  741 (1174)
T KOG0933|consen  682 AQKELRAIQKELEALERELKSLEAQSQKF----RDLKQQLELKL---------------HELALLEK-RLEQNEFHKLLD  741 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---------------HHHHHHHH-HHhcChHhhHHH
Confidence            34455555666666666666555555555    45666664322               22222222 111222111222


Q ss_pred             HhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc------CcchHHhhhhhhccc
Q 021571          162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV------SPKNFERINKLLVVK  235 (310)
Q Consensus       162 rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev------spkn~e~inkll~~k  235 (310)
                      .+..+.+-+..++..+...+-.+++--|+|--||.++-+|.+--| .+-.++-|-+...      +.++.++=-.....=
T Consensus       742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re-~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l  820 (1174)
T KOG0933|consen  742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE-RRLKDLEKEIKTAKQRAEESSKELEKRENEYERL  820 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444455556677777888889999988874333 3444444444322      223322211111111


Q ss_pred             hhHhhhhhhhhHhhhhhccc----------------------------chhHHHHHHHHhHhhHHHHHHhhHHHHHHHHH
Q 021571          236 DEEIHKLKDEIKIMSAHWKL----------------------------KTKELESQLEKQRRADQELKKRVLKLEFCLQE  287 (310)
Q Consensus       236 D~eIakLrdeiri~SaHW~~----------------------------ktKELEsQlekqRR~dQElKkrVlkLEfclqE  287 (310)
                      --|+.-|.+||+-.-.+|..                            ...+|..|-.++|-.|-|+..-+.+-|-|++|
T Consensus       821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e  900 (1174)
T KOG0933|consen  821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE  900 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence            12344444555544445533                            23455566667788888888888888888887


Q ss_pred             H
Q 021571          288 A  288 (310)
Q Consensus       288 a  288 (310)
                      -
T Consensus       901 ~  901 (1174)
T KOG0933|consen  901 K  901 (1174)
T ss_pred             h
Confidence            4

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=81.18  E-value=29  Score=37.09  Aligned_cols=162  Identities=22%  Similarity=0.326  Sum_probs=85.5

Q ss_pred             HHHhhHhhhHhHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhcchhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHH
Q 021571          112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEV  191 (310)
Q Consensus       112 ~eLD~lRSQLs~tqATAeaSaaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeV  191 (310)
                      .|+..|..||.-.  -.|-++   -.+.|+++  -.+|+--.+-|.++..+|++|.++|+.|.+--...+.  ....   
T Consensus       265 ~EiqKL~qQL~qv--e~EK~~---L~~~L~e~--Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~--~~~~---  332 (717)
T PF09730_consen  265 SEIQKLKQQLLQV--EREKSS---LLSNLQES--QKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQ--QSAE---  332 (717)
T ss_pred             HHHHHHHHHHHHH--hhHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh--hhhh---
Confidence            5566666666543  233222   33444443  3456666778889999999999999999882211111  0001   


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHhhhhhcccchhHHHHHHHHhHhhH
Q 021571          192 FRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRAD  271 (310)
Q Consensus       192 lRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eIakLrdeiri~SaHW~~ktKELEsQlekqRR~d  271 (310)
                              +-..-.+.+.+    .-.-+|.-+.++.+..-+.+--.|+..|+.||+.+-+-...--.--+.+...-+..-
T Consensus       333 --------d~~~~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~  400 (717)
T PF09730_consen  333 --------DSEKERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEV  400 (717)
T ss_pred             --------hcccccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    11111112222    111222223344445555566688999999998773322111111112222334445


Q ss_pred             HHHHHhhHHHHHHHHHHHHhhHHHHH
Q 021571          272 QELKKRVLKLEFCLQEARAQTRKLQR  297 (310)
Q Consensus       272 QElKkrVlkLEfclqEaRsqtrKlQr  297 (310)
                      |.|+.++..+|=|..+.+.++..|+.
T Consensus       401 q~L~ekl~~lek~~re~qeri~~LE~  426 (717)
T PF09730_consen  401 QNLKEKLMSLEKSSREDQERISELEK  426 (717)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            77777777777777666666655543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=81.10  E-value=32  Score=28.92  Aligned_cols=72  Identities=18%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHh
Q 021571           47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR  118 (310)
Q Consensus        47 LaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~lR  118 (310)
                      +-.|+.+...+|+..++-+.++..-=...+.....+++....+++-+++..+.+.+....-..+..++-+++
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555544444443333333333334444444444444444444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=80.76  E-value=50  Score=30.98  Aligned_cols=66  Identities=24%  Similarity=0.401  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhhhhhcc----hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHh
Q 021571          140 LQCLALVKELDEKNSS----LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA  205 (310)
Q Consensus       140 lqCl~L~keL~eK~~s----LkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avaka  205 (310)
                      ++=+..+-.||..+.+    .++|..-+..+-.+++-+.+++.+.+.--..|+.+|.++|.||-++-.+-
T Consensus         6 ~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~   75 (239)
T COG1579           6 LKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI   75 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455554443    46888889999999999999999999999999999999999998765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 7e-13
 Identities = 40/265 (15%), Positives = 101/265 (38%), Gaps = 14/265 (5%)

Query: 29   LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK 88
            L  +  E +         L   L E+  R+  +E+         Q+ + + K M+ ++  
Sbjct: 907  LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE-------RSQQLQAEKKKMQQQMLD 959

Query: 89   LQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKE 148
            L++ LEE     Q           ++  +   +   +   +      +  + +   L   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 149  LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN 208
            L E+    K       +    +  L+  L+  E S+++L+    ++E +      +    
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 209  KDCELRKLLDEVSPKNFERINKLLVVKDE--EIHKLKDEIKIMSAHWKLKTKELESQLEK 266
            +  ++ +L  +++ K  E    L  ++DE  + +    +I+ + +H      +L+  LE 
Sbjct: 1080 QA-QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH----ISDLQEDLES 1134

Query: 267  QRRADQELKKRVLKLEFCLQEARAQ 291
            ++ A  + +K+   L   L+  + +
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTE 1159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 31/268 (11%)

Query: 30   LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
            LK+L +K     +    L  +L+      A  E+  V+    +QE E     ME  I   
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI--- 936

Query: 90   QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
             +  EER+ +LQA     ++   Q+  L  QL   +A          +A  +   +  ++
Sbjct: 937  -EEEEERSQQLQAEKKKMQQ---QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 150  DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNK 209
                    +       L +++ +L  +L   E   K L     + E  I           
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS---------- 1042

Query: 210  DCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRR 269
              EL   L        ++  K     ++   KL+ E   +         ++     +  +
Sbjct: 1043 --ELEVRL--------KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 270  ADQELKKRVLKLEFCLQEARAQTRKLQR 297
             ++EL+  + +LE    +  +Q     +
Sbjct: 1093 KEEELQAALARLE----DETSQKNNALK 1116

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 40/264 (15%), Positives = 101/264 (38%), Gaps = 7/264 (2%)

Query: 36   KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95
            K     + + +   EL+  + R    E    +      +   +   +++++    +   E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 96   RNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSS 155
                    A   ++    L  + +++   +  +    A  +  Q Q L L ++L+E+ ++
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 156  LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK--AGVNKDCEL 213
             ++ +        ++  ++ D+   E    +L  E   +E+ +            K   L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 214  RKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQE 273
             KL ++      E +   L V+ ++  K + E++ +    + ++ +L  Q+ + +    E
Sbjct: 1031 TKLKNK-----HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 274  LKKRVLKLEFCLQEARAQTRKLQR 297
            LK ++ K E  LQ A A+      
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETS 1109

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/169 (14%), Positives = 65/169 (38%)

Query: 30   LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
            + DL        +   +L     +  + ++  E    KE  +RQE E   + +E E   L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 90   QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
             + + E   ++        K   +L    ++L    +  + +    +  +     L ++L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 150  DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198
            + + ++  + E +   L ++L+ L+ +L+    +    ++      +D 
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 25   EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMED 84
            E++  LK   + +Q   K    L  E  ++  ++A  +           E + +    E+
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA-------QIAELKAQLAKKEE 1095

Query: 85   EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144
            E+      LE+   +   +     +    +  L+  L + KA  + +    +    +  A
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 145  LVKELDEKNSSLKEHEDRVTRLGQQLD 171
            L  EL++   +    ++      +  D
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-10
 Identities = 54/369 (14%), Positives = 120/369 (32%), Gaps = 101/369 (27%)

Query: 20  SVPAREIDPLLKDLNEKKQSFR--KNVV----------SLAAEL---KEVRTRLASQ--- 61
           +V  R        L +     R  KNV+           +A ++    +V+ ++  +   
Sbjct: 130 NVS-RL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 62  ---EQCFVKETLTRQ------EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKY-- 110
              + C   ET+         + +    +  D    ++  +      L+     ++ Y  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYEN 245

Query: 111 -LMQLD-----------GLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKE 158
            L+ L             L  ++  T  T         SA          LD  + +L  
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTT---HISLDHHSMTLTP 300

Query: 159 HEDRVTRLGQQLDNLQKDL--QARESS-------QKQLKDEVFRIEQ------DIMQTIA 203
            E + + L + LD   +DL  +   ++        + ++D +   +       D + TI 
Sbjct: 301 DEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 204 KAGVN--KDCELRKLLDEVS--PKNFERI-NKLLVV-----KDEEIHKLKDEIKIMSA-- 251
           ++ +N  +  E RK+ D +S  P +   I   LL +        ++  + +++   S   
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 252 -HWKLKTKELES---QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVML------- 300
              K  T  + S   +L+ +   +  L + ++       +     +      L       
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIV-------DHYNIPKTFDSDDLIPPYLDQ 471

Query: 301 ----YISYH 305
               +I +H
Sbjct: 472 YFYSHIGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 54/315 (17%), Positives = 106/315 (33%), Gaps = 97/315 (30%)

Query: 24  REIDPLLKDLNEKKQSFR---------KNVV-----------------SLAAELK----- 52
            EID ++   +    + R         + +V                  +  E +     
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 53  -----EVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107
                E R RL +  Q F K  ++R +             KL++ L E    L+      
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQ----------PYLKLRQALLE----LR-----P 149

Query: 108 EKYLMQLDGL----RSQLAATKATADASAASAQSAQLQCLAL-------VKELDEKNSSL 156
            K ++ +DG+    ++ +A              S ++QC          +K  +   + L
Sbjct: 150 AKNVL-IDGVLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216
           +     + +L  Q+D    +  +R      +K  +  I+ ++ + +      ++C L  +
Sbjct: 200 E----MLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLL--V 249

Query: 217 LDEV-SPKNFERIN---KLLV------VKDEEIHKLKDEIKIMSAHWKLKTKELESQLEK 266
           L  V + K +   N   K+L+      V D         I +      L   E++S L K
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 267 Q-RRADQELKKRVLK 280
                 Q+L + VL 
Sbjct: 310 YLDCRPQDLPREVLT 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 51/164 (31%)

Query: 181 ESSQKQLKDEVFRIEQDIMQTIAKAGV-NKDC-----ELRKLL-----DEV--SPKNFER 227
           E+ + Q +       +DI+     A V N DC       + +L     D +  S      
Sbjct: 10  ETGEHQYQY------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 228 INKL---LVVKDEEIHK------LKDEIKIMSAHWK-------LKTKELESQLEKQRRAD 271
             +L   L+ K EE+ +      L+   K + +  K       + T+    Q ++    +
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 272 QELKKR-------VLKLEFCLQEARAQTRKLQRVMLYISYHSGM 308
           Q   K         LKL   L E R      + V++      G+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPA----KNVLID-----GV 158

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 5/176 (2%)

Query: 23   AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            A+     LK      + ++K  + L  ++ +++ ++  Q + +          E+     
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 83   EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
             +++    + L       + +         ++  LR +L  T+         A   + + 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 143  LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198
              LV EL E+N+ LK  ++    L +++ +  K++   E+ +K+L +E  ++E D+
Sbjct: 1022 EQLVSELKEQNTLLKTEKE---ELNRRIHDQAKEIT--ETMEKKLVEETKQLELDL 1072

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 33/275 (12%), Positives = 81/275 (29%), Gaps = 40/275 (14%)

Query: 23   AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
             R+    ++D     Q+  +  +        +R   +   Q  V+  L R       K +
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890

Query: 83   EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
                  LQ        + +            L  L+ +           A S +  +   
Sbjct: 891  V----YLQCCYRRMMAKRE------------LKKLKIE-----------ARSVERYKKLH 923

Query: 143  LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            + L  ++ +    + E       L ++++NL+          +   +         ++  
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER--------LRMS 975

Query: 203  AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
             +   N    +  L +E+      ++ K L     E   +++         +    EL+ 
Sbjct: 976  EEEAKNATNRVLSLQEEI-----AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 263  QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
            Q    +   +EL +R+      + E   +    + 
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 32/238 (13%), Positives = 89/238 (37%), Gaps = 35/238 (14%)

Query: 35   EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94
              +  + + + ++       R  +A +E   +K      E   K          L+  + 
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI------GLENKIM 931

Query: 95   ERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNS 154
            +   ++       +  L +++ L                S ++ +L+  + V+ L     
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITY------------STETEKLR--SDVERLRMSEE 977

Query: 155  SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELR 214
              K   +RV  L +++  L+K+L   ++ +K +++   + + +  Q ++        EL+
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS--------ELK 1029

Query: 215  KLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQ 272
            +    +  +  E   ++     ++  ++ + ++        +TK+LE  L  +R   Q
Sbjct: 1030 EQNTLLKTEKEELNRRI----HDQAKEITETME---KKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 32/230 (13%), Positives = 74/230 (32%), Gaps = 17/230 (7%)

Query: 72   RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATAD-- 129
                  + + M D    LQ  L     R +      E   + +        A        
Sbjct: 828  MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 130  ASAASAQSAQLQCLA--LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187
             +    Q    + +A   +K+L  +  S++ ++     L  ++  LQ+ +  +    K L
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 188  KDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247
             +++  +E        K        LR  ++ +         +        +  L++EI 
Sbjct: 948  LEKMNNLEITYSTETEK--------LRSDVERL-----RMSEEEAKNATNRVLSLQEEIA 994

Query: 248  IMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297
             +         E ++  E   +   E ++ V +L+      + +  +L R
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.22
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.66
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.23
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	90.17
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	88.42
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.26
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.96
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.67
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.46
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.58

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.22  E-value=0.048  Score=42.53  Aligned_cols=31  Identities=10%  Similarity=0.179  Sum_probs=12.4

Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHH
Q 021571          260 LESQLEKQRRADQELKKRVLKLEFCLQEARA  290 (310)
Q Consensus       260 LEsQlekqRR~dQElKkrVlkLEfclqEaRs  290 (310)
                      ++.++...++.-..+...+-.++.-++..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (284)
T 1c1g_A          242 AERSVTKLEKSIDDLEDELYAQKLKYKAISE  272 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.66  E-value=0.16  Score=39.56  Aligned_cols=25  Identities=12%  Similarity=0.072  Sum_probs=9.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhh
Q 021571           36 KKQSFRKNVVSLAAELKEVRTRLAS   60 (310)
Q Consensus        36 KK~sfRRNVvsLaaELKd~R~rLas   60 (310)
                      |-.+++..+..+..++.++...++.
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~   31 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKA   31 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.23  E-value=0.013  Score=60.47  Aligned_cols=38  Identities=29%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             hHHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHH
Q 021571          258 KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL  295 (310)
Q Consensus       258 KELEsQlekqRR~dQElKkrVlkLEfclqEaRsqtrKl  295 (310)
                      ++++.+++..+..-++++.++-.+|.=+++.+.+...+
T Consensus      1070 ~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l 1107 (1184)
T 1i84_S         1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107 (1184)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555444555555555555665555555544443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=90.17  E-value=6  Score=31.49  Aligned_cols=28  Identities=29%  Similarity=0.276  Sum_probs=14.1

Q ss_pred             HHHhhHHHHHHhhhchHHHHHHHHHHHh
Q 021571           67 KETLTRQEAEMKAKNMEDEICKLQKTLE   94 (310)
Q Consensus        67 kEt~tRk~AE~kak~ME~Ei~kLqK~Le   94 (310)
                      ++...|++.|.+...+..|+..|+..|+
T Consensus        31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~   58 (129)
T 2fxo_A           31 KSEARRKELEEKMVSLLQEKNDLQLQVQ   58 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=88.42  E-value=11  Score=32.35  Aligned_cols=70  Identities=6%  Similarity=0.141  Sum_probs=44.0

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 021571           31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL  100 (310)
Q Consensus        31 kDL~EKK~sfRRNVvsLaaELKd~R~rLasQEq~~akEt~tRk~AE~kak~ME~Ei~kLqK~Leek~~QL  100 (310)
                      .+++-+-..++.-.-.|-+||.++...++.-...+..=.......+...+..|.+|..+...+..-..+|
T Consensus        14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555556667777777777666666655555555666666677777777766666655555

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.26  E-value=36  Score=40.06  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             HhhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhH
Q 021571           77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGL  117 (310)
Q Consensus        77 ~kak~ME~Ei~kLqK~Leek~~QL~as~~stekyl~eLD~l  117 (310)
                      .|...-.+.|..||+.|.++..+|......|++.+.++..=
T Consensus      1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A         1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555567888888888888888888888888888776543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.96  E-value=12  Score=32.17  Aligned_cols=87  Identities=21%  Similarity=0.228  Sum_probs=56.3

Q ss_pred             chhhhhhHhhhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc-CcchHHhhhhhhc
Q 021571          155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV-SPKNFERINKLLV  233 (310)
Q Consensus       155 sLkEhE~rV~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~~~~El~kil~ev-spkn~e~inkll~  233 (310)
                      -++++-..|..+..++..++..+.+-.---..++.++.++|.||-+.-++.....     +-++.| +||=++.+.+=+.
T Consensus        26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~-----~~l~~v~~~kE~~aL~kEie  100 (256)
T 3na7_A           26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ-----KKMSEIKSERELRSLNIEED  100 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCSSSSHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHccCCHHHHHHHHHHHH
Confidence            3444556677777777777777777777777888888888888888776663222     222333 5666666666555


Q ss_pred             cchhHhhhhhhhh
Q 021571          234 VKDEEIHKLKDEI  246 (310)
Q Consensus       234 ~kD~eIakLrdei  246 (310)
                      .-..+|..|.++|
T Consensus       101 ~~~~~i~~lE~ei  113 (256)
T 3na7_A          101 IAKERSNQANREI  113 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.18  E-value=14  Score=38.69  Aligned_cols=47  Identities=21%  Similarity=0.339  Sum_probs=10.6

Q ss_pred             hchHHHHHHHHHHHhhh---hhhhhhhhhhH-HHHHHHHhhHhhhHhHHHH
Q 021571           80 KNMEDEICKLQKTLEER---NGRLQASACTA-EKYLMQLDGLRSQLAATKA  126 (310)
Q Consensus        80 k~ME~Ei~kLqK~Leek---~~QL~as~~st-ekyl~eLD~lRSQLs~tqA  126 (310)
                      ..||.+|..|+.+|++.   +..|++..... ++...|...|+.++...+.
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~  974 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM  974 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777653   33444433222 3344566666555544433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.67  E-value=26  Score=32.04  Aligned_cols=45  Identities=29%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             hhhHHHHHhHHHHHhhhhhhHHhHhHHHHHHHHHHHHHHHHhcCC
Q 021571          164 TRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN  208 (310)
Q Consensus       164 ~~LgEQLD~LQKdLqaRE~SQkQLKDeVlRIE~dIm~Avakag~~  208 (310)
                      .++..+.+.+++.++...-...++++|+-.+..+|.+-..+...|
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~  584 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN  584 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344555666666666666667788888888888887777666443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.46  E-value=5  Score=40.37  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             HhHhHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHh-hhhhhhhHhhhhhcccchhHHHHH
Q 021571          185 KQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEI-HKLKDEIKIMSAHWKLKTKELESQ  263 (310)
Q Consensus       185 kQLKDeVlRIE~dIm~Avakag~~~~~El~kil~evspkn~e~inkll~~kD~eI-akLrdeiri~SaHW~~ktKELEsQ  263 (310)
                      =+|+.-+.+.|+|++..|        ++|++-++++ -+|+..++.....+-+++ .++.+.. -+.....--+.|||.+
T Consensus        49 CrLQglLdkqErDltkrI--------NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRr  118 (562)
T 3ghg_A           49 CRMKGLIDEVNQDFTNRI--------NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSR  118 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred             cchhhhHHhhcCcHHHHH--------HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHH
Confidence            368888999999999988        6789999999 899999988877666655 2232222 2222223334455555


Q ss_pred             HHHhHhhHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhh
Q 021571          264 LEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRVMLYI  302 (310)
Q Consensus       264 lekqRR~dQElKkrVlkLEfclqEaRsqtrKlQr~~~~~  302 (310)
                      ++--++.=+.-..++-.|+=-|.+-|   -|+||+-.-|
T Consensus       119 IqyLKekVdnQlsnIrvLQsnLedq~---~kIQRLEvDI  154 (562)
T 3ghg_A          119 IEVLKRKVIEKVQHIQLLQKNVRAQL---VDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            55444444443344445554444433   4455544433

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.58  E-value=0.44  Score=33.01  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=18.2

Q ss_pred             HhhhhhhccchhHhhhhhhhh
Q 021571          226 ERINKLLVVKDEEIHKLKDEI  246 (310)
Q Consensus       226 e~inkll~~kD~eIakLrdei  246 (310)
                      +++-+-+..||+|||+||.|=
T Consensus        10 ekLhk~ie~KdeeIa~Lk~eN   30 (37)
T 1t6f_A           10 EKLHKEIEQKDNEIARLKKEN   30 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            577888999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00