Citrus Sinensis ID: 021574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MDSAFVNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccEEcccccccccEEEEccEEEcccEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEEEEccccccEEEEEcccEEEcccccccccccccEEcccccccccccccccEEEEEEEEEEEEEcccccccccccEEEcccccEEEEcccccccccEEEcccEEEccccEEEEEEccccccccccEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccccccccccEEccEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEccHHHHHHHHccccccccEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccEEEEcccccccccHHcccHHHcccccccEEEccEEEEEEEEEEEcccccccccccccccccccEEEEEEEccHHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEcEEEcccccccccccccccHHHHccccccEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MDSAFVNKDAIarstshvspahyvVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVlypngnesknVKDHISLYLAMADTNSLNFGLEVYAVFRLFLldqnqdnyLVVQNAKERRFNGLKLEWGFDQFISHKAFkeasngylvedtCVFGAEVFVkernigkgeclsmekftysskyVWKVENFSKLdtryeesqvfgagnhkwKIVLyprgngcgdgdhLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAkdwfqspnltwgwtrfisfselnkpgtgflVNDVCVVEAEVTVLGTSEPL
Flexible Loop (DISEMBL)
MDSAFvnkdaiarstshvspahyvVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKernigkgeclsmekftysskyvWKVENFSKLDTRYEEsqvfgagnhkWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Low Complexity Region (SEG)
MDSAFVNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Disordered region (IsUnstruct)
*****************VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVL******
Disordered Region (DISOPRED)
*********************HYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLG**********DWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP*
Disordered Region (DISEMBL)
MDSAFVNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Disordered Region (DISPRO)
*******************PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSAFVNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.4	0.111	0.387	4e-21
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.406	0.113	0.358	5e-20
Q8T126	1304	Probable inactive serine/	no	no	0.845	0.200	0.232	1e-11
Q8RY18	1055	MATH domain-containing pr	no	no	0.393	0.115	0.305	6e-10
Q1EBV6	410	BTB/POZ and MATH domain-c	no	no	0.432	0.326	0.288	7e-07
P34568	451	BTB and MATH domain-conta	yes	no	0.412	0.283	0.311	2e-06
O22286	408	BTB/POZ and MATH domain-c	no	no	0.341	0.259	0.303	2e-06
Q9UTT1	1129	Ubiquitin carboxyl-termin	yes	no	0.406	0.111	0.257	3e-06
A1L4W5	415	BTB/POZ and MATH domain-c	no	no	0.438	0.327	0.259	4e-05
Q86AY4	449	TNF receptor-associated f	no	no	0.403	0.278	0.312	4e-05

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 5/129 (3%)

Query: 177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD--STVD 234
           K+ W + NFS+ +TR   S VF  G +KW+I+++P+GN     DHLS+YL + D  S   
Sbjct: 56  KFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPY 112

Query: 235 GIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
           G   YA+++L +++Q+  ++   +  +  F +    WG+T F+  SEL  P  G+LVND 
Sbjct: 113 GWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDT 172

Query: 295 CVVEAEVTV 303
            +VEAEV V
Sbjct: 173 VLVEAEVAV 181

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 80/131 (61%), Gaps = 5/131 (3%)

Query: 175 SSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-- 232
           S K+ W +  F++L+TR   S VF  G +KW+I+++P+GN     DHLS+YL + D+   
Sbjct: 53  SLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVADAANL 109

Query: 233 VDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVN 292
             G   Y++++L +++Q+  ++   +  +  F +    WG+T F+  SEL +P  G+LVN
Sbjct: 110 PYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVN 169

Query: 293 DVCVVEAEVTV 303
           D  ++EAEV V
Sbjct: 170 DTVLIEAEVAV 180

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 43/305 (14%)

Query: 14   STSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHIS 73
            +T+ ++   +++ I +FS   ++     + S  F   G  W+   Y NG ++ +    +S
Sbjct: 1019 TTNTLNQGSWIISINNFSNRKDQ-----FYSPIFSLIGSNWRCKFYSNGKDA-STSGKLS 1072

Query: 74   LYLAMAD--TNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFIS 131
            ++++  D   N     LE    ++L L++Q   N   +Q +    F+  +   G+  FI 
Sbjct: 1073 IFISNCDLLNNPFTIFLEKSISYKLTLINQKNPNE-SIQKSSSHTFSIKEFNHGYGSFIG 1131

Query: 132  HKAFKEASNGYLVEDTCVFGAEV--------FVKERNIGKGECLSMEKFTYSSKYVWKVE 183
              +    +NG+LV +T     +            + NIG  +      F+YS      V 
Sbjct: 1132 LFSLLNPNNGFLVNNTIKVRIDAAPTSPLVNTYDKYNIGLNQA-----FSYS------VP 1180

Query: 184  NFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYT 243
              SK    +  S +F +   KW I +YP G      +++S++L   D   + +     ++
Sbjct: 1181 MMSKKSEPFI-SPIFMSCGRKWIIKIYPMGQP--SSNYMSVFLEYRDEGEENV----HFS 1233

Query: 244  LRILDQLGAKHKSLQAAKDW----FQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEA 299
            L ++ QL  +    Q+ K W    F S + ++G+ +FI  S L  P  GFLVND  ++  
Sbjct: 1234 LELISQLYPE----QSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNV 1289

Query: 300  EVTVL 304
             +  L
Sbjct: 1290 SILQL 1294

Dictyostelium discoideum (taxid: 44689)

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 9/131 (6%)

Query: 177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALG--DSTVD 234
           K  W +E FS ++ R     VF  G +KW I++YP+  GC   +HLSL+L +   +  + 
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQ--GCDVCNHLSLFLCVAHHEKLLP 127

Query: 235 GIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
           G   +A++T+ + ++   K K       +++  +  WGW +FI   EL K   GF+ +  
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEH-DWGWKKFI---ELPKLKEGFIDDSG 183

Query: 295 CV-VEAEVTVL 304
           C+ ++A+V V+
Sbjct: 184 CLTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 15  TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISL 74
           T  V+ +H  V I+ +S      +     S  F  GGY+W +  YP+G   ++   ++S+
Sbjct: 24  TQTVNGSHQFV-IQGYSLAKGMGIGKHIASDNFSVGGYQWGIFFYPDGKNPEDNSSYVSV 82

Query: 75  YLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNG----LKLE---WGFD 127
           ++A+A       G EV A+F L L+DQ+      V +  ER  +G    LK     WG+ 
Sbjct: 83  FIALASE-----GTEVRALFELALVDQSGKGKHKVHSHFERSLDGGPYTLKYRGSMWGYK 137

Query: 128 QFISHKAFKEASNGYLVEDTCVFGAEVFV 156
           +F   ++  E S+ YL +D  +    V V
Sbjct: 138 RFF-RRSILETSD-YLKDDCLIINCTVGV 164

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 10/138 (7%)

Query: 22  HYVVKIKSFSFLAEKAVEVKYESAAFEAG---GYKWKLVLYPNGNESKNVKDHISLYLAM 78
           +Y+  I +FSF  E+  EV  +S+ F AG     KW L + P G + ++ +D++SLYL +
Sbjct: 97  NYMWTINNFSFCREEMGEV-LKSSTFSAGCNDKLKWCLRINPKGLDEES-RDYLSLYLLL 154

Query: 79  ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA 138
              N      EV A F+  +L+  ++    +++ +  RF   K +WGF +FI      + 
Sbjct: 155 VQCNKS----EVRAKFKFSILNAKREETKAMESQRAYRFVQGK-DWGFKKFIRRDFLLDE 209

Query: 139 SNGYLVEDTCVFGAEVFV 156
           +NG L  D      EV V
Sbjct: 210 ANGLLPGDRLSIFCEVSV 227

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Caenorhabditis elegans (taxid: 6239)

>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 16/122 (13%)

Query: 43  ESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMA-DTNSLNFGLEVYAVFRLFLLDQ 101
           +S  F  GGY W +  YP+G   ++   +ISL++A+A D+N      ++ A+F L L+DQ
Sbjct: 47  QSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSN------DIRALFELTLMDQ 100

Query: 102 NQDNYLVVQNAKERRFNG----LKLE---WGFDQFISHKAFKEASNGYLVEDTCVFGAEV 154
           +      V +  +R   G    LK +   WG+ +F    A +  ++ YL +D  V    V
Sbjct: 101 SGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKRSALE--TSDYLKDDCLVINCTV 158

Query: 155 FV 156
            V
Sbjct: 159 GV 160

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 33/159 (20%)

Query: 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLA-LGDSTVD 234
           + Y W V+NFS L+ +   S +F AG+  W+IVL+P+  GC   ++ S++L  L    V+
Sbjct: 52  ASYSWVVKNFSTLEDK-TYSPLFKAGHTTWRIVLFPK--GCNQTEYASVFLEYLPQCKVE 108

Query: 235 GIKVY-------------------------AEYTLRILDQLGAKHKSLQAAKDWFQSPNL 269
            I+ Y                         A++ L + +        +  +   F+S   
Sbjct: 109 AIRKYEAELAAGKTPTIDPEIVNDETYSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVK 168

Query: 270 TWGWTRFISFSELNKP----GTGFLVNDVCVVEAEVTVL 304
            WG+TRF+   ++  P       FL ND   +   V VL
Sbjct: 169 DWGFTRFVDLRKIAVPTPEFPVPFLENDEICISVTVRVL 207

Involved in regulating the steady-state levels of proteins including prp4.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 12  ARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDH 71
           +RS +  +   +   I+ +S      V     S  F  GGY+W + +YP+G   ++   +
Sbjct: 27  SRSVTQTTNGSHQFVIQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVYPDGKNPEDNSSY 86

Query: 72  ISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNG----LKLE---W 124
           +S+++ +A   +     EV A+F L L+DQ+      V +   R  +G    LK     W
Sbjct: 87  VSVFIVLASECT-----EVRALFELSLVDQSGKGKHKVHSHFNRSLDGGPYTLKYRGSMW 141

Query: 125 GFDQFISHKAFKEASNGYLVEDT----CVFGAEV 154
           G+ +F   ++  E S+ YL +D     C  G  V
Sbjct: 142 GYKRFF-RRSLLETSD-YLKDDCLKINCTVGVVV 173

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340 OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 16/141 (11%)

Query: 171 KFTYSSKYVWKVENFSKLDTRYE-----ESQVFGAGNHKWKIVLYPRGNGCGD--GDHLS 223
           KF Y +K  W + N+S+    Y      ES  F  GN K+KI  YP G G  D   D LS
Sbjct: 309 KFNYQNK--WVITNWSQKLQDYPKPKSIESPEFMVGNLKFKIQFYPNG-GLSDESKDFLS 365

Query: 224 LYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELN 283
           +YL   D   D      +++  +L++   +++ L A+ + F + N  WGW  FI+ S L 
Sbjct: 366 IYLYKFD---DQTPSKVQFSFELLNKDFTRNRKL-ASTNIFHTEN-KWGWRSFINNS-LV 419

Query: 284 KPGTGFLVNDVCVVEAEVTVL 304
              TGF++ +   +   + +L
Sbjct: 420 TTQTGFVIQNSVTLNINIEIL 440

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.970	0.974	0.550	1e-92
21537273	309	unknown [Arabidopsis thaliana]	0.964	0.967	0.554	2e-92
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.958	0.939	0.550	9e-88
18401489	309	TRAF-like family protein [Arabidopsis th	0.964	0.967	0.554	9e-88
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.958	0.939	0.554	1e-87
11994555	304	unnamed protein product [Arabidopsis tha	0.958	0.976	0.554	3e-87
255556544	455	nucleic acid binding protein, putative [	0.938	0.639	0.553	3e-86
356519881	310	PREDICTED: uncharacterized protein LOC10	0.974	0.974	0.533	1e-81
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.967	0.964	0.511	2e-79
224101481	292	predicted protein [Populus trichocarpa]	0.874	0.928	0.5	6e-75

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 222/307 (72%), Gaps = 6/307 (1%)

Query: 7   NKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK 66
           + D I +S S   P HY+VKI+SFS L + A+E +YE+ +FEAGGYKWKLVLYPNGN+SK
Sbjct: 6   DHDEIIKSISDAPPTHYMVKIESFSLLTKHAIE-RYETESFEAGGYKWKLVLYPNGNKSK 64

Query: 67  NVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGF 126
           N KDH+S+YLA+AD++SL+ G EVYAVFRL+LLDQN+DNYL++Q   ERRF+ +K EWGF
Sbjct: 65  NTKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ-GNERRFHAVKREWGF 123

Query: 127 DQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENF 185
           D+FI    F +ASNGYL+EDTC+FGA+VFV KER  G+GECLSM K   SSK+VWK+ENF
Sbjct: 124 DKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENF 183

Query: 186 SKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD--STVDGIKVYAEYT 243
           SKLD    +S  F AG+ KWK+  YP G   G G HLS+YL L D  +  DG K++ E+T
Sbjct: 184 SKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFT 243

Query: 244 LRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303
           +RI DQL  +H + +  K WF   +   GW +++S     +P +G L+ DVC+VEA+V V
Sbjct: 244 IRIFDQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCV 302

Query: 304 LGTSEPL 310
            G +  +
Sbjct: 303 HGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 221/305 (72%), Gaps = 6/305 (1%)

Query: 9   DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
           D I +S S   P HY+VKI+SFS L + A+E +YE+ +FEAGGYKWKLVLYPNGN+SKN 
Sbjct: 8   DEIIKSISDAPPTHYMVKIESFSLLTKHAIE-RYETESFEAGGYKWKLVLYPNGNKSKNT 66

Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQ 128
           KDH+S+YLA+AD++SL+ G EVYAVFRL+LLDQN+DNYL++Q   ERRF+ +K EWGFD+
Sbjct: 67  KDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ-GNERRFHSVKREWGFDK 125

Query: 129 FISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENFSK 187
           FI    F ++SNGYL+EDTC+FGA+VFV KER  G+GECLSM K   SSK+VWK+ENFSK
Sbjct: 126 FIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSK 185

Query: 188 LDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD--STVDGIKVYAEYTLR 245
           LD    +S  F AG+ KWKI  YP G   G G HLS+YL L D  +  DG K++ E+T+R
Sbjct: 186 LDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIR 245

Query: 246 ILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           I DQL  +H + +  K WF   +   GW +++S     +P +G L+ DVC+VEA+V V G
Sbjct: 246 IFDQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHG 304

Query: 306 TSEPL 310
            +  +
Sbjct: 305 ITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 217/305 (71%), Gaps = 8/305 (2%)

Query: 9   DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
           D I+R  S V PAHY VKI+SFS L + +V+ ++ES  FEAGGYKWKLVL+P+G++SKN 
Sbjct: 10  DEISRYVSDVPPAHYTVKIESFSLLTKNSVD-QFESGEFEAGGYKWKLVLHPHGDKSKNG 68

Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNA--KERRFNGLKLEWGF 126
            DHISLYL +A T+SL    EV+ V+RLFLLDQN+DNYL V++   K RRF G+K +WGF
Sbjct: 69  NDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGF 128

Query: 127 DQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNI--GKGECLSMEKFTYSSKYVWKVEN 184
           D++IS K FKE+SNGYLV+D CVFGAEVFV + N   GKGECLSM K   + K+VWK++N
Sbjct: 129 DKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDN 188

Query: 185 FSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTV--DGIKVYAEY 242
           FSKLD    ES++F AG+ KWKI +YP+G+G G+G HLS YL L D        K+YAE 
Sbjct: 189 FSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEV 248

Query: 243 TLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302
           TLR+ DQ+ +KH S + +  WF + N   G  RFI      +P  GFLV D  +VEAEV+
Sbjct: 249 TLRLQDQIYSKHHSGKVSY-WFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVS 307

Query: 303 VLGTS 307
           ++G +
Sbjct: 308 IIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 221/305 (72%), Gaps = 6/305 (1%)

Query: 9   DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
           D I +S S   P HY+VKI+SFS L + A+E +YE+ +FEAGGYKWKLVLYPNGN+SKN 
Sbjct: 8   DEIIKSISDAPPTHYMVKIESFSLLTKHAIE-RYETESFEAGGYKWKLVLYPNGNKSKNT 66

Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQ 128
           KDH+S+YL++AD++SL+ G EVYAVFRL+LLDQN+DNYL++Q   ERRF+ +K EWGFD+
Sbjct: 67  KDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ-GNERRFHSVKREWGFDK 125

Query: 129 FISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENFSK 187
           FI    F +ASNGYL+EDTC+FGA+VFV KER  G+GECLSM K   SSK+VWK+ENFSK
Sbjct: 126 FIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSK 185

Query: 188 LDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD--STVDGIKVYAEYTLR 245
           LD    +S  F AG+ KWKI  YP G   G G HLS+YL L D  +  DG K++ E+T+R
Sbjct: 186 LDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIR 245

Query: 246 ILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           I DQL  +H + +  K WF   +   GW +++S     +P +G L+ DVC+VEA+V V G
Sbjct: 246 IFDQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHG 304

Query: 306 TSEPL 310
            +  +
Sbjct: 305 ITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 216/305 (70%), Gaps = 8/305 (2%)

Query: 9   DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
           D I+R  S V PAHY VKI+SFS L + +V+ ++ES  FEAGGYKWKLVL+P+G++SKN 
Sbjct: 10  DEISRYVSDVPPAHYTVKIESFSLLTKNSVD-QFESGEFEAGGYKWKLVLHPHGDKSKNG 68

Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNA--KERRFNGLKLEWGF 126
            DHISLYL +A T+SL    EV+ V+RLFLLDQN+DNYL V++   K RRF G+K +WGF
Sbjct: 69  NDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGF 128

Query: 127 DQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNI--GKGECLSMEKFTYSSKYVWKVEN 184
           D++IS K FKE+SNGYLV+D CVFGAEVFV + N   GKGECLSM K   + K+VWK++N
Sbjct: 129 DKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDN 188

Query: 185 FSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTV--DGIKVYAEY 242
           FSKLD    ES++F AG+ KWKI +YP+G+G G+G HLS YL L D        K+YAE 
Sbjct: 189 FSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEV 248

Query: 243 TLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302
           TLR+ DQ+ +KH S + +  WF + N   G  RFI      +P  GFLV D  +VEAEV 
Sbjct: 249 TLRLQDQIYSKHHSGKVSY-WFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVN 307

Query: 303 VLGTS 307
           V+G +
Sbjct: 308 VIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/303 (55%), Positives = 220/303 (72%), Gaps = 6/303 (1%)

Query: 11  IARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKD 70
           I +S S   P HY+VKI+SFS L + A+E +YE+ +FEAGGYKWKLVLYPNGN+SKN KD
Sbjct: 5   IIKSISDAPPTHYMVKIESFSLLTKHAIE-RYETESFEAGGYKWKLVLYPNGNKSKNTKD 63

Query: 71  HISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFI 130
           H+S+YL++AD++SL+ G EVYAVFRL+LLDQN+DNYL++Q   ERRF+ +K EWGFD+FI
Sbjct: 64  HVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ-GNERRFHSVKREWGFDKFI 122

Query: 131 SHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENFSKLD 189
               F +ASNGYL+EDTC+FGA+VFV KER  G+GECLSM K   SSK+VWK+ENFSKLD
Sbjct: 123 PTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLD 182

Query: 190 TRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD--STVDGIKVYAEYTLRIL 247
               +S  F AG+ KWKI  YP G   G G HLS+YL L D  +  DG K++ E+T+RI 
Sbjct: 183 KESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIF 242

Query: 248 DQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTS 307
           DQL  +H + +  K WF   +   GW +++S     +P +G L+ DVC+VEA+V V G +
Sbjct: 243 DQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHGIT 301

Query: 308 EPL 310
             +
Sbjct: 302 SAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/300 (55%), Positives = 206/300 (68%), Gaps = 9/300 (3%)

Query: 14  STSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHIS 73
           + S  SP HY VKI+ FS LA +    KYES +FEAGGYKWKLVLYP GN+SKNV +H+S
Sbjct: 162 TMSDASPTHYTVKIQLFSLLAVE----KYESGSFEAGGYKWKLVLYPKGNKSKNVMEHLS 217

Query: 74  LYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHK 133
           LY+AMAD+++L  G EV+ VFRLFLLDQ +DNYL++   KE RF+G +LEWGFDQ I   
Sbjct: 218 LYIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP-GKECRFHGFRLEWGFDQLIPLA 276

Query: 134 AFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRY 192
             K+  NGYLVEDTCVFGAEVFV KE   GKGECLSM K + +SK +W+ ENFSKLD   
Sbjct: 277 TLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMIKSSSTSKNLWRFENFSKLDAEC 336

Query: 193 EESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST--VDGIKVYAEYTLRILDQL 250
            +S+ F AG+ +WKI LYP+G G G G HLSL+LAL D T    G K+ A++TLRILDQ 
Sbjct: 337 NDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRILDQS 396

Query: 251 GAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL 310
              H     A  WF + +   GW+RF    +L      +L  D C+ EAE+TVLG ++ L
Sbjct: 397 RGSHL-FGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/309 (53%), Positives = 209/309 (67%), Gaps = 7/309 (2%)

Query: 7   NKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK 66
           ++DAI RST    PAHYV+KI+SFS LA+ ++E +YES  FEAGGYKWKLVLYP+GN+SK
Sbjct: 3   SQDAIPRSTVDAPPAHYVMKIQSFSLLAKNSIE-RYESGKFEAGGYKWKLVLYPSGNKSK 61

Query: 67  NVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNA--KERRFNGLKLEW 124
           N+++HISLYLA+ DT+SL+ G E+Y  FR FL DQ  DNYLV  +    ERRF+ +K EW
Sbjct: 62  NIREHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEW 121

Query: 125 GFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVE 183
           G DQFI  + F  AS GYLV+DTC FGAEVFV KER+ GKGECL M K     K++++ +
Sbjct: 122 GIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFD 181

Query: 184 NFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTV--DGIKVYAE 241
           N SKLD    +S+ F AGN KWKI LYP+G G   G++LSLYLAL D +      K+YA+
Sbjct: 182 NLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQ 241

Query: 242 YTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
            TLRILDQ  AKH     A  WF + +   G   F+  +       G++V D C VEAEV
Sbjct: 242 ITLRILDQKQAKHH-FGKANYWFSASSHENGAAIFMPINNFTNQNFGYVVKDSCFVEAEV 300

Query: 302 TVLGTSEPL 310
            +LG  + L
Sbjct: 301 IILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/307 (51%), Positives = 210/307 (68%), Gaps = 7/307 (2%)

Query: 9   DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
           + I+RS    SP HY++KI+SFS L   ++E +YES  FEAGG+KWKLVLYP+GN+SKNV
Sbjct: 6   EGISRSIVEASPVHYIMKIQSFSLLTTNSIE-RYESGRFEAGGHKWKLVLYPSGNKSKNV 64

Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQN--AKERRFNGLKLEWGF 126
           KDHISLYLA+ +++SL+ G E+Y  F+LF+ DQN DNYLV+Q+   KE+RF+ +K+EWGF
Sbjct: 65  KDHISLYLALEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGF 124

Query: 127 DQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENF 185
           DQFI  K F   S GYL++D C FGAEVFV +E   GKGE L M K     K+VW++++F
Sbjct: 125 DQFIPLKDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDF 184

Query: 186 SKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTV--DGIKVYAEYT 243
           SKLD+   +S+ F  GN+KW+I LYP+G     G +L+LYL L + T    G K+YA+  
Sbjct: 185 SKLDSECCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIYAQTI 244

Query: 244 LRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303
           LRILDQ  +KH+    A  WF + +   G +RFI  S       G+LV D+C V+ EVTV
Sbjct: 245 LRILDQKQSKHQ-FWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEVTV 303

Query: 304 LGTSEPL 310
           LG  + L
Sbjct: 304 LGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101481|ref|XP_002312298.1| predicted protein [Populus trichocarpa] gi|222852118|gb|EEE89665.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 150/300 (50%), Positives = 200/300 (66%), Gaps = 29/300 (9%)

Query: 14  STSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHIS 73
           S S  SP HY VKI+ FS LA+ AVE KYE+  FEAGGY WKLVLYP+GN+S+NVKD+IS
Sbjct: 17  SISDASPVHYTVKIELFSLLAKNAVE-KYETGVFEAGGYTWKLVLYPSGNKSRNVKDYIS 75

Query: 74  LYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHK 133
           LYLA  D +SL  G EV+ +FRLFLLDQN+D+YL+                         
Sbjct: 76  LYLAKVDASSLPLGWEVHVIFRLFLLDQNKDSYLL------------------------S 111

Query: 134 AFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSM-EKFTYSSKYVWKVENFSKLDTR 191
            F ++  G+L+EDTCV GAEVFV +ER+ GKGE LSM ++ T + K+ WK+ENF KLD +
Sbjct: 112 TFNDSRYGFLLEDTCVLGAEVFVRRERSRGKGEVLSMIKQPTAAFKHTWKIENFLKLDEK 171

Query: 192 YEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVD-GIKVYAEYTLRILDQL 250
            +ESQ F + + KWKI+LYP+G   G G HLSLYLA+   T+  G ++YA+YTLRI++Q+
Sbjct: 172 RQESQTFSSASEKWKILLYPKGKDFGMGTHLSLYLAVDLETLPAGCRLYADYTLRIVNQV 231

Query: 251 GAKHKSLQA-AKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309
             +   L A AK WF +     GWTR++S   + +P   +++ D+C++EAEV VLG S P
Sbjct: 232 KDRKLDLSAKAKHWFGASRSESGWTRYVSLDYIYQPNNAYVIKDICIIEAEVNVLGISSP 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.964	0.967	0.557	9.6e-89
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.896	0.751	0.342	3.2e-42
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.916	0.749	0.320	2.6e-40
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.932	0.796	0.318	3.3e-40
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.938	0.829	0.332	6.8e-40
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.909	0.805	0.341	1.8e-39
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.803	0.682	0.355	7e-38
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.877	0.647	0.329	1.5e-37
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.919	0.719	0.306	2.2e-34
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.938	0.873	0.313	9.5e-34

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 170/305 (55%), Positives = 222/305 (72%)

Query:     9 DAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNV 68
             D I +S S   P HY+VKI+SFS L + A+E +YE+ +FEAGGYKWKLVLYPNGN+SKN 
Sbjct:     8 DEIIKSISDAPPTHYMVKIESFSLLTKHAIE-RYETESFEAGGYKWKLVLYPNGNKSKNT 66

Query:    69 KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQ 128
             KDH+S+YL++AD++SL+ G EVYAVFRL+LLDQN+DNYL++Q   ERRF+ +K EWGFD+
Sbjct:    67 KDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQG-NERRFHSVKREWGFDK 125

Query:   129 FISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLSMEKFTYSSKYVWKVENFSK 187
             FI    F +ASNGYL+EDTC+FGA+VFV KER  G+GECLSM K   SSK+VWK+ENFSK
Sbjct:   126 FIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSK 185

Query:   188 LDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD-STV-DGIKVYAEYTLR 245
             LD    +S  F AG+ KWKI  YP G   G G HLS+YL L D  T+ DG K++ E+T+R
Sbjct:   186 LDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIR 245

Query:   246 ILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
             I DQL  +H + +  K WF   +   GW +++S     +P +G L+ DVC+VEA+V V G
Sbjct:   246 IFDQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADVCVHG 304

Query:   306 TSEPL 310
              +  +
Sbjct:   305 ITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 98/286 (34%), Positives = 150/286 (52%)

Query:    18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVK-DHISLYL 76
             + P+ Y +KI+SF   A      KYES  FE+GGY W L++YP GN  +    +++S+Y+
Sbjct:    78 IPPSTYCLKIESFIKFATSPNAEKYESRPFESGGYNWTLIVYPKGNIKEGAPLNYVSMYV 137

Query:    77 AMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFK 136
              + ++  LN   EVYA  + F+ ++ +D YL  Q    +RF   K  WG+     +    
Sbjct:   138 QIDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDAKRFFLFKPYWGYGNVRPYTDVA 197

Query:   137 EASNGYLVE-DTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEES 195
               + G+L + D  +FG +VFV E    K E  S  K  +   Y W + NFS L+ +Y  S
Sbjct:   198 NPNAGWLFDGDNVLFGVDVFVTEV-FNKWEVFSFTKSLHDRLYKWTLPNFSSLEKQYYVS 256

Query:   196 QVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGD-STVDGIKVYAEYTLRILDQLGAKH 254
               F  G   W + +YP G+G G G+ LSLY+   D    D  K+Y +  LRI++Q  +KH
Sbjct:   257 DKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVDVKPYD--KIYLKAKLRIINQRDSKH 314

Query:   255 KSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAE 300
                +  + W    N +WG+ +F+ F++L     G LVND   +E E
Sbjct:   315 ME-KKVESWSDQAN-SWGFQKFVPFADLKDTSKGLLVNDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 95/296 (32%), Positives = 155/296 (52%)

Query:    20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMA 79
             P+ Y +K++SF+ L +     KY S  F  GGY W LV++PNGN+  +   ++SLY+A+ 
Sbjct:    85 PSSYSLKMESFNTLLKSTYTEKYVSRPFSVGGYNWTLVVFPNGNKKDSGSGYLSLYVAI- 143

Query:    80 DTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEAS 139
             D ++L    E+YA  R ++ ++N+  Y  +Q+    +F+  K  WGF Q +    FK+ +
Sbjct:   144 DNSTLG-QQEIYADLRFYIFNKNERKYFTIQDTDVWKFSVFKTMWGFSQVLPIDTFKDPT 202

Query:   140 NGYLVE-DTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVF 198
              GYL + D C FG +V +      K E  S+ +   + ++ W +  FS L      S+VF
Sbjct:   203 KGYLYDGDHCEFGVDVTMPSL-YEKSELFSVTENFLNPRFTWTIRGFSTLLKNSYLSEVF 261

Query:   199 GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTV--DGIKVYAEYTLRILDQLGAKHKS 256
               G   W I + P G G G+G  LS+YL L  + +     K+Y    LR L+QL   +  
Sbjct:   262 SIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNEIFRPYEKIYVRAKLRALNQLNLSN-- 319

Query:   257 LQAAKD-WFQSPNL---TWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSE 308
             ++   D W+  P     +WG+  FI F  L     GF+ NDV +V+ E+  + +++
Sbjct:   320 IERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKGFVKNDVLMVQVEMEAISSTK 375

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 95/298 (31%), Positives = 153/298 (51%)

Query:    20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMA 79
             P+ Y +K++SF+ L +     +YES  F  G Y W LV+YP GN++ N   HISLY+ + 
Sbjct:    66 PSSYSLKMESFNTLMKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNGTGHISLYVVLD 125

Query:    80 DTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEAS 139
             ++   +   EV+   R ++ ++ +  Y  +Q+    RF+ +K  WGF + +    F    
Sbjct:   126 NSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDTDVWRFSAIKRMWGFSKVLPLITFNNLK 185

Query:   140 NGYLVE-DTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQVF 198
             NGYL + D C FG +V +      K E  S+ K   S ++ W ++ +S L T Y  S+ F
Sbjct:   186 NGYLYDVDHCEFGVDVIIPPF-YEKSEVFSVTKSFPSPRFTWYIQGYSTLPTDYL-SEEF 243

Query:   199 GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIK----VYAEYTLRILDQLGAKH 254
               G   W + ++  G G  +G +LSLYL LG   +   K    VY    LR+ +Q G++ 
Sbjct:   244 IIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKLRVPNQFGSQS 303

Query:   255 KS-LQAAKD-WFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL 310
                L+   D WF    + WG+  F+  S+L     GFLVND+ VV+  +  + ++  L
Sbjct:   304 NLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQVAMEEISSTNYL 361

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 99/298 (33%), Positives = 150/298 (50%)

Query:     7 NKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK 66
             N     R      P+  +V I SFS + ++     YES+ FEA GYKW+LVLY  GN   
Sbjct:    47 NLGVTTRELRDERPSSKIVTITSFSVIKDRGEP--YESSIFEAAGYKWRLVLYVKGNPKG 104

Query:    67 NVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGF 126
              + +HISLY  + +T +L  G EV    +LF+ ++    YL V +   +R+N  K EWGF
Sbjct:   105 GINNHISLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTDGTVKRYNDAKKEWGF 164

Query:   127 DQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFS 186
              Q IS   F  A+ GYLV+DT  FGAE+F+      K E ++       + + WK+  FS
Sbjct:   165 TQLISLPTFYNANEGYLVQDTASFGAEIFIVNPT-EKQEKVTFISNPPDNVFTWKILRFS 223

Query:   187 KLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGI--KVYAEYTL 244
              L+ ++  S  F  G+  W++   P+G+G G    L ++L       + +    +    L
Sbjct:   224 TLEDKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNL 283

Query:   245 RILDQLGAKHKSLQAAKDWFQ-SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
             R+ +Q  + HK L +A  W+    +   G    I  SEL     G++VND  + EAE+
Sbjct:   284 RLKNQRSSNHKQLYSAA-WYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEM 340

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 102/299 (34%), Positives = 149/299 (49%)

Query:    11 IARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKD 70
             + R      P+  +V I SFS +  K     YES+ FEA GYKW+LVLY NGN++    D
Sbjct:    50 VTRELREERPSSKIVTITSFSVI--KGRGEPYESSVFEAAGYKWRLVLYVNGNKNDGGND 107

Query:    71 HISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFI 130
             HISLY  + +TNSL  G EV    +LF+ +     YL V +   +R+N  K EWGF Q I
Sbjct:   108 HISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLVKRYNNAKKEWGFGQLI 167

Query:   131 SHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSK-----YVWKVENF 185
                 F  A+ GYL +DT  FGAE+F+ +           EK T+ S      + WK+  F
Sbjct:   168 PRSTFYNANEGYLDQDTGSFGAEIFIVK------PAQQQEKVTFISNPPNNVFTWKILRF 221

Query:   186 SKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYL-ALGD-STVDGIKVYAEYT 243
             S L+ ++  S  F   +  W++   P+G+G G    L ++L A G  +       +    
Sbjct:   222 STLEDKFYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVN 281

Query:   244 LRILDQLGAKHKSLQAAKDWFQ-SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
             LR+ +Q    H+ + +A  W+        G    I  ++LN    G+LVND  + EAE+
Sbjct:   282 LRLKNQRSTNHRQIYSAA-WYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEM 339

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 96/270 (35%), Positives = 142/270 (52%)

Query:    20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMA 79
             P+ Y +KI   S L       KYES  F +GGY W+LV+YP GNE       IS+Y+   
Sbjct:    98 PSSYSLKINKLSQLTFD----KYESHRFLSGGYNWRLVIYPKGNEKDKGSGFISMYVEFD 153

Query:    80 DTN-SLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA 138
             +T  S    +EV+A    F+ ++ ++ Y  +Q+ + +RFN L+  WG  Q +S + F + 
Sbjct:   154 NTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDVEVKRFNALRTVWGLSQVLSLETFNDL 213

Query:   139 SNGYLVE-DTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFSKLDTRYEESQV 197
              NGY  E + C FG +V V    I K E +S ++     K+ W V++FS L   +  S+ 
Sbjct:   214 ENGYTFEGEQCEFGVDVMVASP-ITKWEVVSFDEKLDILKFSWSVKDFSVLKEEFYVSER 272

Query:   198 FGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDS---TVDGIKVYAEYTLRILDQLGAKH 254
             F  G   W + +YP+G+   D   LS++L L  S   TVD  K+Y    LR+LD LG   
Sbjct:   273 FSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGSETLTVDE-KIYVIAHLRVLDPLG--- 328

Query:   255 KSLQAAKDWFQSPNLTWGWTRFISFSELNK 284
                    +WF+  N  WG+  F+SFS+L K
Sbjct:   329 -------NWFRDRNKGWGYLEFLSFSKLRK 351

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 96/291 (32%), Positives = 152/291 (52%)

Query:    20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMA 79
             P++ ++ I SFS +  K     YES+ FEAGGYKW+LVLY NGN++    +HISLY+ + 
Sbjct:   129 PSNKILTITSFSVI--KGRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHISLYVRIE 186

Query:    80 DTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEAS 139
             +T SL  G EV    +LF+ +  Q  YL+V++   +R+N  K EWG+ + I    F + +
Sbjct:   187 ETESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIVKRYNDAKKEWGYGKLIPLTTFLDTN 246

Query:   140 NGYLVEDTCVFGAEVFVKERNIGKGECLSM-EKFTYSSK-----YVWKVENFSKLDTRYE 193
              GYL +D   FGAE+F        G  + + EK T+ S      + WK+ +FS L+ ++ 
Sbjct:   247 EGYLEQDIASFGAEIF-------SGTAVQVQEKVTFISNPPNNVFTWKILHFSNLEDKFY 299

Query:   194 ESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYL-ALGDS-TVDGIKVYAEYTLRILDQLG 251
              S  F   +  W++   P+G G G    + ++L A G          +    LR+ +Q  
Sbjct:   300 YSDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRS 359

Query:   252 AKHKSLQAAKDWFQS-PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
             + H  + +A  W+ +  +   G    IS +E N    G+ VND  + EAE+
Sbjct:   360 SNHAQIYSAA-WYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEM 409

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 91/297 (30%), Positives = 150/297 (50%)

Query:    10 AIARSTSHVSPAHYVVKIKSFSFLAEKAVEV--KYESAAFEAGGYKWKLVLYPNGNESKN 67
             A+   T    P  Y VK +SF  +A++  E   KYES  F  GGY W L++YP      +
Sbjct:    84 AVTTDTRTRPPNSYCVKFQSFVTMAKQVKENGGKYESRPFSVGGYNWTLLIYPVIYIPTD 143

Query:    68 VKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFD 127
                ++S+Y+ + +++ +    +VYA         + D Y + Q  + +RF+  K +WG  
Sbjct:   144 SGGYVSIYVRVDNSSLITNPKDVYAEITFLAYKSSTDKYQISQETEAQRFHLFKQQWGLL 203

Query:   128 QFISHKAFKEASNGYLVE-DTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKVENFS 186
             QF+    F+  + GY  E ++ VFG ++ +  +     E  S E+      + W++  FS
Sbjct:   204 QFLPIYYFENPAYGYFFEGESVVFGVDINIV-KPFENWEVFSNEQNIRDPIFEWRLTKFS 262

Query:   187 K--LDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTL 244
                LD+   +S  F +G   W + +YP G G   G+ LSLYL L D + D  K Y E  L
Sbjct:   263 TRFLDSYTSDS--FSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQSND--KGYVEAKL 317

Query:   245 RILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
             R++DQ+ + +   + A  W  +    WG+ RF+SF+++     GFLVND   +E ++
Sbjct:   318 RVIDQIQSNNFEKKVAA-WPNATENGWGFDRFLSFADIKNTSKGFLVNDTLKLEVQI 373

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 96/306 (31%), Positives = 152/306 (49%)

Query:     3 SAFVNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNG 62
             S F N   + R      P+  ++ I SFS +  +     YES+ FEA GYKW+LVLY NG
Sbjct:    37 SQFTN--GVTRVWRDDRPSDKILSITSFSIIRTRPEP--YESSVFEAVGYKWRLVLYVNG 92

Query:    63 NESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKL 122
             NE    KDH+SLY  + +T SL  G EV    +LF+ +   + YL+V     +R+N    
Sbjct:    93 NEKDGGKDHVSLYAKIVETESLPVGWEVNVDLKLFVYNGKLNKYLIVT---VKRYNNATK 149

Query:   123 EWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFVKERNIGKGECLSMEKFTYSSKYVWKV 182
             E G+ Q I    F + ++GY  +DT  FGAE+++ +    K E ++       + + WK+
Sbjct:   150 ELGYGQLIPQSTFYDGNDGYREQDTGTFGAEIYIVKPAQQK-EKVTFISNPPDNVFTWKI 208

Query:   183 ENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEY 242
              +FS L+ +  +S  F  G+  WK+ L P+G G      + LY     +       YA  
Sbjct:   209 LHFSTLEDKVYQSNEFLVGDRYWKLGLNPKG-GLVP---IFLYAQGFKANAVVTTTYAAT 264

Query:   243 TLRILDQLGAKHKSLQAAKDWFQSPN-LTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
              LR+ +Q  + H +   A  W+  P+ L  G    I  S++     G++VND  ++E E+
Sbjct:   265 NLRLKNQRSSNHVTTYTAY-WYLIPSGLGLG-VNTIPLSDVKDASKGYVVNDSIIIEVEM 322

Query:   302 TVLGTS 307
               +  +
Sbjct:   323 LTVSVT 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	6e-32
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	9e-25
pfam00917	116	pfam00917, MATH, MATH domain	3e-12
pfam00917	116	pfam00917, MATH, MATH domain	2e-11
smart00061	95	smart00061, MATH, meprin and TRAF homology	9e-11
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	6e-10
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	4e-09
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	1e-08
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-08
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	4e-07
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	1e-06
cd00270	149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	2e-06
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-06
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	7e-06
cd03772	137	cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui	2e-05
cd03778	164	cd03778, MATH_TRAF2, Tumor Necrosis Factor Recepto	4e-04

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  115 bits (289), Expect = 6e-32
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 5/128 (3%)

Query: 177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLAL--GDSTVD 234
           K+ WK+ NFS+L+     S  F  G +KW+I +YP G+G   GD+LSLYL L  G+S ++
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDG-ESGDYLSLYLELDKGESDLE 60

Query: 235 GIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDV 294
              V AE+TL++++Q G K  S      +F      WG+ +FIS+ +L      +LV+D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDS 118

Query: 295 CVVEAEVT 302
             +E EV 
Sbjct: 119 LTIEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 96.3 bits (240), Expect = 9e-25
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 22  HYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADT 81
            +  KI +FS L  +       S  FE GGYKW++ +YPNG+      D++SLYL +   
Sbjct: 2   KHTWKIVNFSELEGE----SIYSPPFEVGGYKWRIRIYPNGDGES--GDYLSLYLELDKG 55

Query: 82  NSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNG 141
            S      V A F L L++QN    L         F+     WGF +FIS    ++  + 
Sbjct: 56  ESDLEKWSVRAEFTLKLVNQNGGKSLSKSF-THVFFSEKGSGWGFPKFISWDDLED--SY 112

Query: 142 YLVEDTCVFGAEV 154
           YLV+D+     EV
Sbjct: 113 YLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 16/131 (12%)

Query: 27  IKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYL-AMADTNSLN 85
           IK+FS + E   E  Y S   E  G  W+L +Y NG         + LYL          
Sbjct: 1   IKNFSKIKE--GENYYTSPYEERFGIPWRLRIYRNG-------GFLGLYLHCEKGEKDEL 51

Query: 86  FGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVE 145
            G  +   F L L+  N     + +  K   F      +G+ +FIS    +   N Y+V+
Sbjct: 52  LGWSIETEFTLKLVSDN--GKSLTKRNKSHVFTKPT-GYGWGKFISWDDLE---NDYVVD 105

Query: 146 DTCVFGAEVFV 156
           DT +  AEV +
Sbjct: 106 DTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)

Query: 182 VENFSKLDTR--YEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYL---ALGDSTVDGI 236
           ++NFSK+     Y  S         W++ +Y       +G  L LYL         + G 
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYR------NGGFLGLYLHCEKGEKDELLGW 54

Query: 237 KVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCV 296
            +  E+TL+++   G K  + +     F  P   +GW +FIS+ +L      ++V+D  +
Sbjct: 55  SIETEFTLKLVSDNG-KSLTKRNKSHVFTKPT-GYGWGKFISWDDLEND---YVVDDTII 109

Query: 297 VEAEVTV 303
           +EAEV +
Sbjct: 110 IEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 179 VWKVENFSKL-DTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIK 237
               +N S+L +     S      N  W++ +Y +         LSLYL       D  K
Sbjct: 3   SHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRK 56

Query: 238 --VYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFI 277
             + AE+TL+++ Q G         K  F+ P+  WG+++FI
Sbjct: 57  WSIEAEFTLKLVSQNGKSLSKKD--KHVFEKPS-GWGFSKFI 95

Length = 95

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 14/136 (10%)

Query: 26  KIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN 85
           K+K +S LA+K      ES  F  GG+ WK++L+P GN   NV    S+YL         
Sbjct: 44  KVKRWSELAKK-----VESPPFSVGGHTWKIILFPQGNNQCNV----SVYLEYEPQELEE 94

Query: 86  FGLEVYAVFRLFL--LDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNG-- 141
            G + Y     F   +   +   +   N    RF+    +WGF  FI      E S G  
Sbjct: 95  TGGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRP 154

Query: 142 -YLVEDTCVFGAEVFV 156
            +L E T V    V V
Sbjct: 155 PFLEEGTLVITVYVRV 170

Length = 1089

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 21  AHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMAD 80
             +  +IK++S L +K       S  F+ GG++W+++L+P GN   +    +S+YL    
Sbjct: 1   QSFTWRIKNWSELEKKVH-----SPKFKCGGFEWRILLFPQGN---SQTGGVSIYLEPHP 52

Query: 81  TNSLNFGLE----VYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFK 136
                  L+    V A F L + +   D  + + N    RFN    +WGF +FI  +   
Sbjct: 53  EEEEKAPLDEDWSVCAQFALVISNPG-DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLA 111

Query: 137 EASNG 141
             +  
Sbjct: 112 HRTPD 116

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 17  HVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHIS 73
            V    Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G + ++ KD++S
Sbjct: 1   KVVKFCYMWTISNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLS 58

Query: 74  LYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHK 133
           LYL +          EV A F+  +L+   +    +++ +  RF   K +WGF +FI   
Sbjct: 59  LYLLLVSCPKS----EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFIRRD 113

Query: 134 AFKEASNGYLVEDTCVFGAEVFV 156
              + +NG L +D      EV V
Sbjct: 114 FLLDEANGLLPDDKLTLFCEVSV 136

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 168 SMEKFTYSSKYVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDH 221
            + KF     Y+W + NFS       E   S  F +G +   KW + + P+G      D+
Sbjct: 1   KVVKF----CYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDY 56

Query: 222 LSLYLALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSE 281
           LSLYL L   +    +V A++   IL+  G + K++++ + +       WG+ +FI    
Sbjct: 57  LSLYLLL--VSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDF 114

Query: 282 LNKPGTGFLVNDVCVVEAEVTVLG 305
           L     G L +D   +  EV+V+ 
Sbjct: 115 LLDEANGLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 14/136 (10%)

Query: 178 YVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRG-NGCGDGDHLSLYLALGDSTVD-- 234
           + WKV+ +S+L  + E S  F  G H WKI+L+P+G N C     +S+YL      ++  
Sbjct: 41  FTWKVKRWSELAKKVE-SPPFSVGGHTWKIILFPQGNNQCN----VSVYLEYEPQELEET 95

Query: 235 GIKVYAEYTLRILDQLGAKHKSLQAAKDW---FQSPNLTWGWTRFISFSELNKPGTG--- 288
           G K Y        D    K+ +++        F   +  WG+T FI  ++L +P  G   
Sbjct: 96  GGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPP 155

Query: 289 FLVNDVCVVEAEVTVL 304
           FL     V+   V VL
Sbjct: 156 FLEEGTLVITVYVRVL 171

Length = 1089

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 173 TYSSKYVWKVENFSKL----DTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLAL 228
            Y S   + +ENFS L    D  Y  S         W++ +YP GNG   G+ LS++L L
Sbjct: 3   PYDSA-TFTLENFSTLRQSADPVY--SDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLEL 59

Query: 229 GDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPG 286
              +  G     EY + ++ Q        +     F+     WG+ RF     L   G
Sbjct: 60  --CSGLGEASKYEYRVEMVHQANPTKNIKREFASDFE-VGECWGYNRFFRLDLLINEG 114

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 34/154 (22%)

Query: 176 SKYVWKVENFSKL--DTRYEE-----SQVFGAGNHKWK--IVLYPRGNGCGDGDHLSLYL 226
              +WK++++S+   +          S  F    + +K  + LY  G+G G G HLSL++
Sbjct: 1   GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFV 60

Query: 227 ALGDSTVDGI-------KVYAEYTLRILDQ---LGAKH--KSLQAAKDW--FQSP----- 267
            +     D +       K+    TL +LDQ      KH  ++     +   FQ P     
Sbjct: 61  HVMKGEYDALLEWPFRGKI----TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGEN 116

Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV 301
           N+ +G+  F+   +L     G++ +D   ++ EV
Sbjct: 117 NIGFGYPEFVPLEKLESR--GYVKDDTLFIKVEV 148

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 149

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 25  VKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL 84
           V   +F  ++       Y S + E     W+L +Y            +SLYL        
Sbjct: 1   VLSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN-------GFLSLYLHCEKEECD 53

Query: 85  NFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFI 130
           +    + A F L L+ QN  +        +  F      WGF +FI
Sbjct: 54  SRKWSIEAEFTLKLVSQNGKSLS---KKDKHVFEK-PSGWGFSKFI 95

Length = 95

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 178 YVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYL------ALGDS 231
           + W+++N+S+L+ +   S  F  G  +W+I+L+P+GN    G  +S+YL           
Sbjct: 3   FTWRIKNWSELEKKVH-SPKFKCGGFEWRILLFPQGNSQTGG--VSIYLEPHPEEEEKAP 59

Query: 232 TVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNK 284
             +   V A++ L I +      +    A   F + +  WG+TRFI   EL K
Sbjct: 60  LDEDWSVCAQFALVISNPGDPSIQLSNVAHHRFNAEDKDWGFTRFI---ELRK 109

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 182 VENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLAL---GDSTVDGIKV 238
           VE FS+L         F   N  WKI++ PR     +    S+   L    +S       
Sbjct: 9   VERFSRLSESVLSPPCF-VRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSC 67

Query: 239 YAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVE 298
           +A+  LRI++    +    +     F S    WG++ F+++SE+  P  GF+ +D   +E
Sbjct: 68  HAQAVLRIINYKDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLE 127

Query: 299 AEVT 302
             V 
Sbjct: 128 VYVQ 131

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1 plays several important roles in EBV latent infection and cellular transformation. It binds the same pocket as p53 in the HAUSP TRAF-like domain. Through interactions with p53, MDM2 and EBNA1, HAUSP plays a role in cell proliferation, apoptosis and EBV-mediated immortalization. Length = 137

>gnl|CDD|239747 cd03778, MATH_TRAF2, Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 167 LSMEKFTYSSKYVWKVENFSKLDTRYEE----------SQVFGAGNHKWKIVL--YPRGN 214
           L  E  TY   ++WK+ +F++   + +E          S  F    + +K+ L  Y  G+
Sbjct: 10  LEXEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD 66

Query: 215 GCGDGDHLSLYLALGDSTVDGIKVY---AEYTLRILDQLGAKH 254
           G G G HLSL+  +     D +  +    + TL +LDQ   +H
Sbjct: 67  GTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREH 109

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.96
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.95
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.95
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.94
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.93
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.93
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.92
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.91
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.9
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.89
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.88
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.87
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.85
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.84
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.84
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.84
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.77
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.77
smart00061	95	MATH meprin and TRAF homology.	99.7
smart00061	95	MATH meprin and TRAF homology.	99.69
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.55
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.51
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.13
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.41
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.35
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.95
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.66
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.08

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.96  E-value=1.6e-27  Score=186.32  Aligned_cols=131  Identities=23%  Similarity=0.395  Sum_probs=110.6

Q ss_pred             CcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCC--CCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCCC
Q 021574          175 SSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGC--GDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQLG  251 (310)
Q Consensus       175 ~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~--~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~~  251 (310)
                      .++++|+|.||+.+ ++.+.|+.|.+||++|+|++||+|...  +..++|||||+|.... .+.|++.|+|+|+|+||++
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~   80 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKD   80 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCC
Confidence            47899999999998 578999999999999999999999654  3347999999998754 4589999999999999985


Q ss_pred             CceeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574          252 AKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       252 ~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~  306 (310)
                      ......+...+.|.....+|||++||+|++|+++++|||+||+|+|||+|+|-..
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~  135 (137)
T cd03772          81 DEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP  135 (137)
T ss_pred             CcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence            4322213455678766779999999999999877789999999999999998653

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=9.2e-27  Score=182.07  Aligned_cols=130  Identities=17%  Similarity=0.320  Sum_probs=108.7

Q ss_pred             CceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCC-CCCCeEEEEEEEecCCCCCCCcEEEEEEEEEE
Q 021574           20 PAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK-NVKDHISLYLAMADTNSLNFGLEVYAVFRLFL   98 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l   98 (310)
                      .++|+|+|+|||.+.    + .++|+.|.+||++|+|.+||+|.... +..+|||+||.|.+.. ....|++.|+|+|+|
T Consensus         2 ~~~~~~~I~~~S~l~----e-~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l   75 (137)
T cd03772           2 EATFSFTVERFSRLS----E-SVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRI   75 (137)
T ss_pred             CcEEEEEECCcccCC----C-cEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEE
Confidence            589999999999983    2 89999999999999999999996511 3458999999997654 344899999999999


Q ss_pred             EecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           99 LDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        99 ~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      +|+++...... ....+.|......|||.+||++++|.+++++||.||+|+|+|+|+|
T Consensus        76 ~~~~~~~~~~~-~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772          76 INYKDDEPSFS-RRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             EcCCCCcccEE-EeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence            99996433332 2234678766789999999999999877899999999999999998

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.95  E-value=6.4e-27  Score=183.50  Aligned_cols=132  Identities=30%  Similarity=0.520  Sum_probs=110.1

Q ss_pred             cCCceEEEEEccccccccccccceEEeccEEeCC---eEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEE
Q 021574           18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVF   94 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G---~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f   94 (310)
                      +...+|+|+|+|||++++. .++.+.|++|.+||   ++|+|.+||+|.. ++..+|+|+||++++..    .+++.|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~~-~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f   75 (139)
T cd03774           2 VVKFCYMWTISNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF   75 (139)
T ss_pred             ceEEEEEEEECCchhhhhc-CCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEE
Confidence            4678999999999998653 33389999999998   4999999999986 55679999999997643    36899999


Q ss_pred             EEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           95 RLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        95 ~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      +|.|+|+.+...........+.|.. ...|||.+||++++|+++.++||.||+|+|+|+|+|
T Consensus        76 ~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774          76 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             EEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence            9999999987543332334567765 578999999999999877789999999999999998

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.95  E-value=9.3e-27  Score=181.20  Aligned_cols=125  Identities=26%  Similarity=0.538  Sum_probs=106.1

Q ss_pred             eEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCC----CCCCcEEEEEEEEE
Q 021574           22 HYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNS----LNFGLEVYAVFRLF   97 (310)
Q Consensus        22 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~f~~~   97 (310)
                      +|+|+|+|||.+.+     .+.|++|.+|||+|+|.+||+|+. .  .+|+|+||.+.+...    .+.+|++.|+|+|.
T Consensus         2 ~f~w~I~~fS~~~~-----~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~   73 (134)
T cd03775           2 SFTWRIKNWSELEK-----KVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV   73 (134)
T ss_pred             cEEEEECCcccCCc-----ceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence            69999999999632     899999999999999999999976 2  789999999976543    24689999999999


Q ss_pred             EEecCCCceeEEecceeeeecCCccccccceeeeccccccC----CCCeEEcCeEEEEEEEE
Q 021574           98 LLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA----SNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        98 l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~----~~~yl~~d~l~i~~~v~  155 (310)
                      |+||.++..... ....+.|+....+|||.+||++++|++|    ++|||+||+|+|++.|+
T Consensus        74 l~n~~~~~~~~~-~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          74 ISNPGDPSIQLS-NVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EEcCCCCccceE-ccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            999987654332 3357899887789999999999999954    57999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.95  E-value=5.5e-27  Score=183.65  Aligned_cols=133  Identities=20%  Similarity=0.321  Sum_probs=110.2

Q ss_pred             ceEEEEEcccccccc-ccccc--eEEeccE--EeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574           21 AHYVVKIKSFSFLAE-KAVEV--KYESAAF--EAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF   94 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f--~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f   94 (310)
                      |++.|+|++|+++++ .+.+.  .+.|++|  .++||+|+|++||||.+ .+..+|||+||++++++.| ...||+++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~   79 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV   79 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence            689999999999975 34444  7999999  88999999999999987 5678899999999998777 6789999999


Q ss_pred             EEEEEecCCCcee---EE-ecceeeeecCC----ccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574           95 RLFLLDQNQDNYL---VV-QNAKERRFNGL----KLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV  154 (310)
Q Consensus        95 ~~~l~n~~~~~~~---~~-~~~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v  154 (310)
                      +|+|++|.+....   .. .+.....|+..    +..||+.+||++++|+.++.+||+||+|+|+|.|
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999999865432   11 11224668665    5679999999999998544699999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=1.5e-26  Score=180.16  Aligned_cols=134  Identities=24%  Similarity=0.306  Sum_probs=107.2

Q ss_pred             ceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574           21 AHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF   94 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f   94 (310)
                      |++.|+|+||+++.+.   +....++||+|..  .||+|+|++||||.+ .+..+|+|+||+++++..+ ...|++++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~   79 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV   79 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence            6899999999987653   2333799999986  599999999999987 5678899999999987655 6789999999


Q ss_pred             EEEEEecCCCceeEE-ecc--eeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574           95 RLFLLDQNQDNYLVV-QNA--KERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        95 ~~~l~n~~~~~~~~~-~~~--~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      +|+|++|.+...... ...  ..+.|+    ..+..||+.+||++++|+.+..+||+||+++|+|+|.
T Consensus        80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            999999986443211 111  135686    3456799999999999983334999999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=3.7e-26  Score=185.20  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=110.6

Q ss_pred             ccCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE
Q 021574           17 HVSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV   90 (310)
Q Consensus        17 ~~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~   90 (310)
                      ...+|+|.|+|.||+.+++ .+.+.  .++|++|.++  ||+|+|.+||||.+ .+..+|+|+||.+++++.+ ...||+
T Consensus        35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~  113 (186)
T cd03777          35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  113 (186)
T ss_pred             cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence            4557999999999999965 33333  7999999999  99999999999987 5678899999999998766 678999


Q ss_pred             EEEEEEEEEecCCCceeEE----ecceeeeecC-C---ccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574           91 YAVFRLFLLDQNQDNYLVV----QNAKERRFNG-L---KLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        91 ~~~f~~~l~n~~~~~~~~~----~~~~~~~F~~-~---~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      .++++|.|++|.+......    +......|.. .   +..||+..||++++|+  +++||+||+|+|+|.|.
T Consensus       114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            9999999999975322111    1112355762 2   4579999999999998  68999999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=8.7e-26  Score=175.73  Aligned_cols=123  Identities=27%  Similarity=0.533  Sum_probs=104.4

Q ss_pred             EEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC------CCCceEEEEEEEEEEcCC
Q 021574          177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST------VDGIKVYAEYTLRILDQL  250 (310)
Q Consensus       177 ~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~------~~~w~~~~~~~~~l~n~~  250 (310)
                      +|+|+|.|||.+. +.+.|++|.+||++|+|.+||+|+..  .+++|+||.+....      .+.|++.|+|+|.|+||.
T Consensus         2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            5899999999964 78999999999999999999999765  57999999987543      247999999999999997


Q ss_pred             CCceeeecccceeeccCcCCccccceecccccCCC----CCCeeECCEEEEEEEEE
Q 021574          251 GAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKP----GTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       251 ~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~g~l~dD~l~i~~~V~  302 (310)
                      ++.........+.|+....+|||.+||++++|+++    ++|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            65432214557889877789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.94  E-value=2.3e-26  Score=181.82  Aligned_cols=132  Identities=23%  Similarity=0.294  Sum_probs=106.1

Q ss_pred             ceEEEEEcccccccc-ccccc--eEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574           21 AHYVVKIKSFSFLAE-KAVEV--KYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF   94 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f   94 (310)
                      |+|.|+|.|||.+++ ++.+.  .++|++|.+  |||+|+|.+||+|.. ++..+|||+||+++++..+ ..+|++.++|
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~   79 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI   79 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence            689999999998754 34443  388999985  799999999999987 5677899999999987764 6789999999


Q ss_pred             EEEEEecCCCceeE---E-ecceeeeecC-----CccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574           95 RLFLLDQNQDNYLV---V-QNAKERRFNG-----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        95 ~~~l~n~~~~~~~~---~-~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      +|.|+||.++....   . .......|..     .+.+|||.+||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            99999998743321   1 1122345653     34689999999999998  57899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.93  E-value=1.6e-25  Score=175.62  Aligned_cols=127  Identities=29%  Similarity=0.487  Sum_probs=106.9

Q ss_pred             cEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcC
Q 021574          176 SKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQ  249 (310)
Q Consensus       176 ~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~  249 (310)
                      .+|+|+|.|||.+.   ++.+.|++|.+||+   +|+|++||+|...+..+|+|+||++....  .+++.|+|+|.|+||
T Consensus         5 ~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~--~~~v~a~f~~~l~n~   82 (139)
T cd03774           5 FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP--KSEVRAKFKFSILNA   82 (139)
T ss_pred             EEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC--CCcEEEEEEEEEEec
Confidence            57999999999874   67899999999985   99999999998766678999999997643  578999999999999


Q ss_pred             CCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574          250 LGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG  305 (310)
Q Consensus       250 ~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~  305 (310)
                      ++.+.... ....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        83 ~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          83 KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             CCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            87653221 223466753 57899999999999987778999999999999999985

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.93  E-value=1.2e-25  Score=178.78  Aligned_cols=132  Identities=23%  Similarity=0.362  Sum_probs=106.6

Q ss_pred             ceEEEEEccccccccc--c-ccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574           21 AHYVVKIKSFSFLAEK--A-VEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF   94 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~~--~-~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f   94 (310)
                      |+|.|+|.+||.++++  + .+..+.|++|.+|  ||+|+|.+||+|.. ++..+|+|+||++++++.+ ...|++.++|
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~   79 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI   79 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence            6899999999999763  2 3458999999999  99999999999987 5677899999999987655 3689999999


Q ss_pred             EEEEEecCCCc--e--eEE----ecceeeeecC--------CccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574           95 RLFLLDQNQDN--Y--LVV----QNAKERRFNG--------LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        95 ~~~l~n~~~~~--~--~~~----~~~~~~~F~~--------~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      +|+|++|.+..  .  ...    .......|+.        .+.+||+..||++++|+  +++||+||+|+|+|+|.
T Consensus        80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence            99999998641  1  110    1112344552        34579999999999998  68999999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.93  E-value=1e-25  Score=178.95  Aligned_cols=131  Identities=25%  Similarity=0.403  Sum_probs=105.7

Q ss_pred             ceEEEEEccccccccc---cccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEEE
Q 021574           21 AHYVVKIKSFSFLAEK---AVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAVF   94 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~f   94 (310)
                      |+|+|+|.|||.+++.   +.+..++|++|.+|  ||+|+|.+||+|.. ++..+|||+||+++++..+ ...|++.|+|
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~   79 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI   79 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence            6899999999999652   33448999999999  99999999999986 4566899999999888665 5789999999


Q ss_pred             EEEEEecCCC--ceeEE----ecceeeeec-----CCccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574           95 RLFLLDQNQD--NYLVV----QNAKERRFN-----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV  154 (310)
Q Consensus        95 ~~~l~n~~~~--~~~~~----~~~~~~~F~-----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v  154 (310)
                      +|.|+||.++  .....    .......|.     ..+.+|||.+||++++|+  +.+||.||+|+|+|+|
T Consensus        80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v  148 (149)
T cd00270          80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV  148 (149)
T ss_pred             EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence            9999999874  22111    111233454     135789999999999998  4699999999999998

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.92  E-value=1.1e-24  Score=172.70  Aligned_cols=131  Identities=22%  Similarity=0.335  Sum_probs=103.7

Q ss_pred             CceEEEEEccccccc-cccccceEEeccE-EeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE-EEEEEE
Q 021574           20 PAHYVVKIKSFSFLA-EKAVEVKYESAAF-EAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE-VYAVFR   95 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~-~~~~f~   95 (310)
                      +.+|+|+|.|||+++ +.+.+..++|++| .++||+|+|++||+|.. + ..+|||+||++++++.+ .++|+ +.++++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t   78 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT   78 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence            468999999999996 4455558999999 89999999999999987 5 67899999999988765 78899 589999


Q ss_pred             EEEEecCCCc---eeE----Eeccee-------eeecC-----------------CccccccceeeeccccccCCCCeEE
Q 021574           96 LFLLDQNQDN---YLV----VQNAKE-------RRFNG-----------------LKLEWGFDQFISHKAFKEASNGYLV  144 (310)
Q Consensus        96 ~~l~n~~~~~---~~~----~~~~~~-------~~F~~-----------------~~~~~G~~~fi~~~~l~~~~~~yl~  144 (310)
                      |+|++|.+..   ...    .++...       ..|..                 .+.+|||.+||++++|.  +..||+
T Consensus        79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk  156 (167)
T cd03771          79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK  156 (167)
T ss_pred             EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence            9999997421   111    111110       01222                 23489999999999999  577999


Q ss_pred             cCeEEEEEEE
Q 021574          145 EDTCVFGAEV  154 (310)
Q Consensus       145 ~d~l~i~~~v  154 (310)
                      ||+|.|++++
T Consensus       157 ~dtl~i~~~~  166 (167)
T cd03771         157 GDDLIILLDF  166 (167)
T ss_pred             CCEEEEEEEe
Confidence            9999999987

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=8.1e-25  Score=170.18  Aligned_cols=124  Identities=26%  Similarity=0.457  Sum_probs=104.7

Q ss_pred             ccCcEEEEEEcceeccC--CceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcCC
Q 021574          173 TYSSKYVWKVENFSKLD--TRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQL  250 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~--~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~~  250 (310)
                      |+..+++|+|.|||.+.  ++.+.|+.|.+||++|+|++||+|...+.++|||+||.+..+.  .|++.++|+|+|+||.
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~--~~~~~~~~~l~llnq~   79 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL--GEASKYEYRVEMVHQA   79 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC--CCceeEEEEEEEEcCC
Confidence            67788999999999985  5789999999999999999999998776678999999987642  4778899999999995


Q ss_pred             CC-ceeeecccceeeccCcCCccccceecccccCCCCCCeeEC--CEEEEEEEEE
Q 021574          251 GA-KHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVN--DVCVVEAEVT  302 (310)
Q Consensus       251 ~~-~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~d--D~l~i~~~V~  302 (310)
                      ++ .+.. ....+.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        80 ~~~~~~~-~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          80 NPTKNIK-REFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCccceE-EeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            43 3333 445567764 46799999999999985  799999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.6e-24  Score=170.47  Aligned_cols=141  Identities=21%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             cccccccCCceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-
Q 021574           12 ARSTSHVSPAHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-   85 (310)
Q Consensus        12 ~~~~~~~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-   85 (310)
                      .........|++.|+|.||+++.+.   +....++||+|..  +||+|+|++||+|++ .+.+.|||+|+++++++.+. 
T Consensus        10 ~~l~~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~   88 (164)
T cd03778          10 LEXEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDAL   88 (164)
T ss_pred             hhccccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcc
Confidence            3333455689999999999998664   2334899999975  789999999999987 56778999999999999984 


Q ss_pred             CCcEEEEEEEEEEEecCCCceeEE---ecceeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEE
Q 021574           86 FGLEVYAVFRLFLLDQNQDNYLVV---QNAKERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEV  154 (310)
Q Consensus        86 ~~w~~~~~f~~~l~n~~~~~~~~~---~~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v  154 (310)
                      +.||+..+++|+|+||++..+...   ++.....|.    ..+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus        89 L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             cCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            999999999999999986433221   111222453    23567999999999999843 699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.92  E-value=1e-24  Score=169.64  Aligned_cols=126  Identities=21%  Similarity=0.393  Sum_probs=103.5

Q ss_pred             CCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEE
Q 021574           19 SPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFL   98 (310)
Q Consensus        19 ~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l   98 (310)
                      ...+++|+|.|||.+++. ++ .++|++|.+|||+|+|.+||+|.. ++..+|||+||.+.++.    .|++.++|+|+|
T Consensus         3 ~~~~~~~~I~~fS~~~~~-~~-~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l   75 (132)
T cd03773           3 PYDSATFTLENFSTLRQS-AD-PVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM   75 (132)
T ss_pred             CCcccEEEECChhhhhcC-Cc-ceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence            467899999999998642 33 899999999999999999999987 55678999999997642    367889999999


Q ss_pred             EecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEc--CeEEEEEEEE
Q 021574           99 LDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVE--DTCVFGAEVF  155 (310)
Q Consensus        99 ~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~--d~l~i~~~v~  155 (310)
                      +||.++..... ....+.|.. +.+|||.+||++++|.  ++|||.|  |+|+|+|.|+
T Consensus        76 lnq~~~~~~~~-~~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          76 VHQANPTKNIK-REFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             EcCCCCccceE-EeccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            99954433332 334567765 4779999999999998  5899999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=9.5e-25  Score=171.01  Aligned_cols=126  Identities=28%  Similarity=0.457  Sum_probs=104.8

Q ss_pred             cEEEEEEcceeccC-----Cc--eeecceE--EeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574          176 SKYVWKVENFSKLD-----TR--YEESQVF--GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT  243 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~~--~~~S~~f--~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~  243 (310)
                      +.+.|+|.+|+.++     ++  .+.|++|  .++||+|+|++||||.+.+.++|||+||+++.++   ...|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            46899999999986     34  7999999  8899999999999999887788999999999876   35899999999


Q ss_pred             EEEEcCCCCce---eeecc--cceeeccC----cCCccccceecccccCCCCCCeeECCEEEEEEEE
Q 021574          244 LRILDQLGAKH---KSLQA--AKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV  301 (310)
Q Consensus       244 ~~l~n~~~~~~---~~~~~--~~~~F~~~----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V  301 (310)
                      |.|++|.+...   .....  ....|.+.    +.+||+++||++++|+..+.+||+||+|+|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            99999975432   11111  13567655    5579999999999998744689999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.2e-24  Score=169.48  Aligned_cols=127  Identities=23%  Similarity=0.364  Sum_probs=103.4

Q ss_pred             cEEEEEEcceeccC-----C--ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574          176 SKYVWKVENFSKLD-----T--RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT  243 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~--~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~  243 (310)
                      |.+.|+|.||++..     +  ..++|+.|+..  ||+|+|++||||.+.+.++|+|+||+++.++   ...|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            56899999999765     2  36999999885  9999999999999887788999999999875   34899999999


Q ss_pred             EEEEcCCCCceee-eccc---ceeec----cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          244 LRILDQLGAKHKS-LQAA---KDWFQ----SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       244 ~~l~n~~~~~~~~-~~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      |.|++|.+..+.. ....   ...|+    ..+.+||+++||++++|+....+||+||+++|+|+|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            9999997644321 0111   25686    3445799999999999986435899999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=6.4e-24  Score=172.19  Aligned_cols=128  Identities=23%  Similarity=0.406  Sum_probs=105.1

Q ss_pred             cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574          174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE  241 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~  241 (310)
                      ..|.|.|+|.+|+..+     ++  .+.|++|++|  ||+|+|++||||.+.+.++|||+||++++++   ...|++.++
T Consensus        37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~  116 (186)
T cd03777          37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  116 (186)
T ss_pred             cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence            4689999999999875     34  7999999999  9999999999999877788999999999876   348999999


Q ss_pred             EEEEEEcCCCCc-eee----ecccceeecc-C---cCCccccceecccccCCCCCCeeECCEEEEEEEEEE
Q 021574          242 YTLRILDQLGAK-HKS----LQAAKDWFQS-P---NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV  303 (310)
Q Consensus       242 ~~~~l~n~~~~~-~~~----~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v  303 (310)
                      ++|.|++|.+.. +..    .......|.. .   +.+||+++||++++|+.  ++||+||+|+|+|.|..
T Consensus       117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence            999999997521 111    0111245752 2   45799999999999986  68999999999999863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.91  E-value=4.7e-24  Score=169.40  Aligned_cols=125  Identities=26%  Similarity=0.475  Sum_probs=101.7

Q ss_pred             cEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574          176 SKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT  243 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~  243 (310)
                      +.|+|+|.+|+.++       ++.+.|+.|.+|  |++|+|++||+|...+.++|||+||++.++.   ..+|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            47999999999974       358999999999  9999999999998766678999999998765   35799999999


Q ss_pred             EEEEcCCCC---ceeeec----ccceeec-----cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          244 LRILDQLGA---KHKSLQ----AAKDWFQ-----SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       244 ~~l~n~~~~---~~~~~~----~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      |.|+||.++   ++....    .....|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   221100    1123454     1356899999999999986  5899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.91  E-value=3.2e-24  Score=169.60  Aligned_cols=125  Identities=25%  Similarity=0.307  Sum_probs=100.7

Q ss_pred             cEEEEEEcceeccC-----Cc--eeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEEE
Q 021574          176 SKYVWKVENFSKLD-----TR--YEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEYT  243 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~~--~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~~  243 (310)
                      +.|.|+|.+|+.++     ++  .+.|+.|.+  ||++|+|++||+|...+..++||+||+++.++   ..+|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            47999999999754     33  488999986  79999999999999877778999999998865   34799999999


Q ss_pred             EEEEcCCCCce-ee--e--cccceeecc-----CcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          244 LRILDQLGAKH-KS--L--QAAKDWFQS-----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       244 ~~l~n~~~~~~-~~--~--~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      |.|+||.++.. ..  .  ......|..     ...+|||.+||++++|++  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            99999986432 11  0  112245653     345799999999999986  5899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.91  E-value=8.3e-24  Score=168.13  Aligned_cols=125  Identities=26%  Similarity=0.419  Sum_probs=102.0

Q ss_pred             cEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEEEEE
Q 021574          176 SKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYAEYT  243 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~~~~  243 (310)
                      +.|.|+|.+|+.++       +..+.|+.|++|  |++|+|++||||...+.+++||+||++++++ .  ..|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999875       257999999999  9999999999999887788999999999876 2  4899999999


Q ss_pred             EEEEcCCCC--c---eeeec----ccceeecc--------CcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          244 LRILDQLGA--K---HKSLQ----AAKDWFQS--------PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       244 ~~l~n~~~~--~---~~~~~----~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      |.|++|.+.  .   +....    .....|+.        .+.+||+.+||++++|+.  ++||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999764  1   11000    11234542        345799999999999986  6899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.90  E-value=5e-23  Score=162.02  Aligned_cols=127  Identities=26%  Similarity=0.398  Sum_probs=105.4

Q ss_pred             ccCcEEEEEEcceeccC-----C--ceeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574          173 TYSSKYVWKVENFSKLD-----T--RYEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~-----~--~~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      ...+.++|+|.||+.+.     +  ..++||.|+.  +|++|+|++||||++.+.+.|||+|+++++++   ..+||+..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            44799999999999986     2  3789999988  48999999999999888888999999999998   36899999


Q ss_pred             EEEEEEEcCCCCceeeeccc-----ceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEE
Q 021574          241 EYTLRILDQLGAKHKSLQAA-----KDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEV  301 (310)
Q Consensus       241 ~~~~~l~n~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V  301 (310)
                      +++|.|+||++..+.. ...     ...|.+    .+.+|||+.|++.++|... +|||+||+|.|+|.|
T Consensus        96 ~itl~llDQ~~r~hi~-~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECCCCCCcce-eEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999998765543 111     113532    3457999999999999864 699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.89  E-value=1.1e-22  Score=161.31  Aligned_cols=124  Identities=25%  Similarity=0.381  Sum_probs=98.1

Q ss_pred             cEEEEEEcceeccC-----CceeecceE-EeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCce-EEEEEEEE
Q 021574          176 SKYVWKVENFSKLD-----TRYEESQVF-GAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIK-VYAEYTLR  245 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~~~~~S~~f-~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~-~~~~~~~~  245 (310)
                      ..|+|+|.||+.++     +..+.|++| .+||++|+|++||+|... .++||||||++++++   ..+|+ +.++++|.
T Consensus         2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~   80 (167)
T cd03771           2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMT   80 (167)
T ss_pred             CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence            46999999999985     358999998 889999999999999987 778999999999876   45899 58999999


Q ss_pred             EEcCCCCc----eeee---ccc--------ceeecc-----------------CcCCccccceecccccCCCCCCeeECC
Q 021574          246 ILDQLGAK----HKSL---QAA--------KDWFQS-----------------PNLTWGWTRFISFSELNKPGTGFLVND  293 (310)
Q Consensus       246 l~n~~~~~----~~~~---~~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~g~l~dD  293 (310)
                      |++|....    +...   ...        ...|.+                 .+.+|||++||++++|+.  .+||+||
T Consensus        81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~d  158 (167)
T cd03771          81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGD  158 (167)
T ss_pred             EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcCC
Confidence            99997411    1110   000        011222                 234899999999999997  5699999


Q ss_pred             EEEEEEEEE
Q 021574          294 VCVVEAEVT  302 (310)
Q Consensus       294 ~l~i~~~V~  302 (310)
                      +|.|+++++
T Consensus       159 tl~i~~~~~  167 (167)
T cd03771         159 DLIILLDFE  167 (167)
T ss_pred             EEEEEEEeC
Confidence            999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.88  E-value=1.9e-21  Score=149.43  Aligned_cols=122  Identities=39%  Similarity=0.691  Sum_probs=101.9

Q ss_pred             EEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC--CCCceEEEEEEEEEEcCCCCce
Q 021574          177 KYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST--VDGIKVYAEYTLRILDQLGAKH  254 (310)
Q Consensus       177 ~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~--~~~w~~~~~~~~~l~n~~~~~~  254 (310)
                      +|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..++||+||+|....  ...|++.++++|.|+|+++.+.
T Consensus         2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (126)
T cd00121           2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS   80 (126)
T ss_pred             EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence            6899999999966789999999999999999999999765 467999999998765  2579999999999999985544


Q ss_pred             eeecccceeec-cCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          255 KSLQAAKDWFQ-SPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       255 ~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      .. ......|. ....+|||.+||++++|+++  ++++||+|+|+|+|.
T Consensus        81 ~~-~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          81 LS-KSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             ce-EeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            43 33334443 45689999999999999974  349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.87  E-value=3.7e-21  Score=147.77  Aligned_cols=125  Identities=36%  Similarity=0.525  Sum_probs=100.8

Q ss_pred             ceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEe
Q 021574           21 AHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLD  100 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n  100 (310)
                      ++|+|+|.+|+...   ++ .++|+.|.++|++|+|.+||+|.. . ..+|||+||.|.........|++.++|+|+|+|
T Consensus         1 ~~~~~~i~~~~~~~---~~-~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~   74 (126)
T cd00121           1 GKHTWKIVNFSELE---GE-SIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN   74 (126)
T ss_pred             CEEEEEECCCCCCC---Cc-EEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence            47999999999921   23 899999999999999999999986 2 678999999998776545679999999999999


Q ss_pred             cCCCceeEEecceeeeec-CCccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574          101 QNQDNYLVVQNAKERRFN-GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      +++.+....  .....|. ....+|||.+||++++|.+  ..++.||+|+|+|+|.
T Consensus        75 ~~~~~~~~~--~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          75 QNGGKSLSK--SFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCCccceE--eccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            984433322  1233442 4568999999999999993  4449999999999983

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.85  E-value=9.7e-21  Score=144.39  Aligned_cols=118  Identities=35%  Similarity=0.572  Sum_probs=97.5

Q ss_pred             EccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEEEEEEEEEEEecCCCc
Q 021574           27 IKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEVYAVFRLFLLDQNQDN  105 (310)
Q Consensus        27 I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~f~~~l~n~~~~~  105 (310)
                      |+|||++..  ++..+.|+.|.++|++|+|.+||+|+     .+++++||.|..+..+. ..|++.++++|+|+++.++.
T Consensus         1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~   73 (119)
T PF00917_consen    1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS   73 (119)
T ss_dssp             ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred             CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence            789999972  23255568888999999999999975     58999999999987653 68999999999999999987


Q ss_pred             eeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574          106 YLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus       106 ~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      ....  ...+.|... .+|||.+||++++|.++  .|+.||+|+|+|+|+|
T Consensus        74 ~~~~--~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   74 ISKR--IKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEE--EECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             ceee--eeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            4332  125788774 89999999999999943  3899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.84  E-value=1.9e-20  Score=146.65  Aligned_cols=133  Identities=21%  Similarity=0.365  Sum_probs=104.0

Q ss_pred             CceEEEEEccccccccc-cccceEEeccEEe-CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE-EEEEE
Q 021574           20 PAHYVVKIKSFSFLAEK-AVEVKYESAAFEA-GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV-YAVFR   95 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~~-~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~-~~~f~   95 (310)
                      +..+.|+|.||+++.+. .....++||+|.. .||+.+|++||+|....+.+.|+|+|+++++++.| .+.||+ .-+.+
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            45789999999998764 2334899999987 59999999999998633567899999999999998 889995 56999


Q ss_pred             EEEEecCCC---ceeE----Eecc--ee------eeecC--------------CccccccceeeeccccccCCCCeEEcC
Q 021574           96 LFLLDQNQD---NYLV----VQNA--KE------RRFNG--------------LKLEWGFDQFISHKAFKEASNGYLVED  146 (310)
Q Consensus        96 ~~l~n~~~~---~~~~----~~~~--~~------~~F~~--------------~~~~~G~~~fi~~~~l~~~~~~yl~~d  146 (310)
                      |+|++|++.   ..+.    .++.  ..      ..|+.              .+.++||..||++++|.  +.+||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCC
Confidence            999999752   1111    1111  10      11433              24589999999999999  69999999


Q ss_pred             eEEEEEEE
Q 021574          147 TCVFGAEV  154 (310)
Q Consensus       147 ~l~i~~~v  154 (310)
                      +|.|.+++
T Consensus       159 tlfI~~~~  166 (167)
T cd03783         159 DLIIFVDF  166 (167)
T ss_pred             eEEEEEec
Confidence            99999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.84  E-value=1e-20  Score=144.30  Aligned_cols=114  Identities=37%  Similarity=0.716  Sum_probs=94.5

Q ss_pred             EcceeccC-Cc-eeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEEEEEEEEEcCCCCceee
Q 021574          182 VENFSKLD-TR-YEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYAEYTLRILDQLGAKHKS  256 (310)
Q Consensus       182 i~~fs~~~-~~-~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~~~~~~l~n~~~~~~~~  256 (310)
                      |+||+.+. ++ ...|+.+.++|++|+|.+||+|+    ++++++||+|..+. .  ..|++.+++++.++++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            68999997 33 34458888999999999999987    46999999999987 3  48999999999999998877333


Q ss_pred             ecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEE
Q 021574          257 LQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV  303 (310)
Q Consensus       257 ~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v  303 (310)
                       ....+.|.. ..+|||.+||+|++|+++.  |++||+|+|+|+|+|
T Consensus        77 -~~~~~~F~~-~~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 -RIKSHSFNN-PSSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             -EEECEEECT-TSEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             -eeeeeEEee-ecccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence             222578864 4789999999999999863  899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.84  E-value=2.1e-20  Score=145.50  Aligned_cols=131  Identities=20%  Similarity=0.344  Sum_probs=104.8

Q ss_pred             CceEEEEEccccccccc-cccceEEeccEE-eCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE-EEEE
Q 021574           20 PAHYVVKIKSFSFLAEK-AVEVKYESAAFE-AGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY-AVFR   95 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~-~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~-~~f~   95 (310)
                      +..+.|+|.||+++.++ +....++||+|. ..||+.++.+||||.+ .+ .+|||+|+++++++.| .++||+. -+++
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit   78 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT   78 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence            45789999999999775 344489999995 4999999999999987 33 6899999999999998 8899999 8999


Q ss_pred             EEEEecCC---CceeEE------ecceee---ee--cCC-----------------ccccccceeeeccccccCCCCeEE
Q 021574           96 LFLLDQNQ---DNYLVV------QNAKER---RF--NGL-----------------KLEWGFDQFISHKAFKEASNGYLV  144 (310)
Q Consensus        96 ~~l~n~~~---~~~~~~------~~~~~~---~F--~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~  144 (310)
                      |+|++|++   ...+..      ++....   .|  ...                 +.++||+.||++++|.  ++.||+
T Consensus        79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik  156 (167)
T cd03782          79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK  156 (167)
T ss_pred             EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence            99999975   222211      111111   34  222                 5789999999999999  689999


Q ss_pred             cCeEEEEEEE
Q 021574          145 EDTCVFGAEV  154 (310)
Q Consensus       145 ~d~l~i~~~v  154 (310)
                      ||.+.|-+++
T Consensus       157 dD~ifi~~~~  166 (167)
T cd03782         157 GDDVIFLLTM  166 (167)
T ss_pred             CCeEEEEEec
Confidence            9999998875

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.77  E-value=1.5e-18  Score=136.00  Aligned_cols=125  Identities=26%  Similarity=0.420  Sum_probs=98.0

Q ss_pred             cEEEEEEcceeccC-----CceeecceEEe-CCceEEEEEEeCCCCC-CCCCeEEEEEEeCCCC---CCCceE-EEEEEE
Q 021574          176 SKYVWKVENFSKLD-----TRYEESQVFGA-GNHKWKIVLYPRGNGC-GDGDHLSLYLALGDST---VDGIKV-YAEYTL  244 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~~~~~S~~f~~-gg~~w~i~~yp~g~~~-~~~~~ls~yL~~~~~~---~~~w~~-~~~~~~  244 (310)
                      ..+.|+|.||+++.     +..++||.|+. .|++.+|++||+|++. +.+.|+|+|+++++++   ..+||+ .-+++|
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl   81 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII   81 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence            35899999999876     35799999988 4999999999999864 5678999999999998   468995 569999


Q ss_pred             EEEcCCCCc----eeee---ccc---------ceeeccC--------------cCCccccceecccccCCCCCCeeECCE
Q 021574          245 RILDQLGAK----HKSL---QAA---------KDWFQSP--------------NLTWGWTRFISFSELNKPGTGFLVNDV  294 (310)
Q Consensus       245 ~l~n~~~~~----~~~~---~~~---------~~~F~~~--------------~~~~G~~~fi~~~~L~~~~~g~l~dD~  294 (310)
                      .|++|++..    +...   ...         ...|++.              +.++||+.|++++.|+.  ++||+||+
T Consensus        82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt  159 (167)
T cd03783          82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD  159 (167)
T ss_pred             EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence            999997411    1110   000         1114433              35899999999999997  78999999


Q ss_pred             EEEEEEEE
Q 021574          295 CVVEAEVT  302 (310)
Q Consensus       295 l~i~~~V~  302 (310)
                      |.|.++++
T Consensus       160 lfI~~~~~  167 (167)
T cd03783         160 LIIFVDFE  167 (167)
T ss_pred             EEEEEecC
Confidence            99998763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.77  E-value=2.3e-18  Score=134.08  Aligned_cols=123  Identities=20%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             cEEEEEEcceeccC-----CceeecceEEe-CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEE-EEEEEE
Q 021574          176 SKYVWKVENFSKLD-----TRYEESQVFGA-GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVY-AEYTLR  245 (310)
Q Consensus       176 ~~~~~~i~~fs~~~-----~~~~~S~~f~~-gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~-~~~~~~  245 (310)
                      ..+.|+|.||+++.     +..++||.|+. .|++.+|++||||.+.+ +.|||+|+++++++   ..+||+. .+++|.
T Consensus         2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~   80 (167)
T cd03782           2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM   80 (167)
T ss_pred             CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence            35899999999976     35799999877 69999999999999865 67999999999998   4589999 899999


Q ss_pred             EEcCCC---C-ceeee----c-c---c-ceee--ccC-----------------cCCccccceecccccCCCCCCeeECC
Q 021574          246 ILDQLG---A-KHKSL----Q-A---A-KDWF--QSP-----------------NLTWGWTRFISFSELNKPGTGFLVND  293 (310)
Q Consensus       246 l~n~~~---~-~~~~~----~-~---~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~g~l~dD  293 (310)
                      |++|++   . .+...    + .   . ...|  .+.                 +.++||+.||++++|+.  +.||+||
T Consensus        81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD  158 (167)
T cd03782          81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD  158 (167)
T ss_pred             EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence            999974   1 12220    0 0   0 1134  322                 46899999999999997  6799999


Q ss_pred             EEEEEEEE
Q 021574          294 VCVVEAEV  301 (310)
Q Consensus       294 ~l~i~~~V  301 (310)
                      ++.|-+++
T Consensus       159 ~ifi~~~~  166 (167)
T cd03782         159 DVIFLLTM  166 (167)
T ss_pred             eEEEEEec
Confidence            99998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.70  E-value=1.9e-16  Score=115.51  Aligned_cols=94  Identities=29%  Similarity=0.416  Sum_probs=78.7

Q ss_pred             EEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEecC
Q 021574           23 YVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQN  102 (310)
Q Consensus        23 ~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n~~  102 (310)
                      ++|+|+||+.+..  ++ .++|++|.++|++|+|.+||+       .+|||+||.|.+....+..|++.|+|+|+|+|++
T Consensus         2 ~~~~~~~~~~~~~--~~-~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~   71 (95)
T smart00061        2 LSHTFKNVSRLEE--GE-SYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN   71 (95)
T ss_pred             ceeEEEchhhccc--Cc-eEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence            5799999999842  23 899999999999999999998       3799999999877655558999999999999999


Q ss_pred             CCceeEEecceeeeecCCccccccceee
Q 021574          103 QDNYLVVQNAKERRFNGLKLEWGFDQFI  130 (310)
Q Consensus       103 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi  130 (310)
                      ++...   ....+.|.. ..+|||.+||
T Consensus        72 ~~~~~---~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       72 GKSLS---KKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CCEEe---eeeeEEEcC-CCccceeeEC
Confidence            86542   235788886 6889999886

>smart00061 MATH meprin and TRAF homology

Probab=99.69  E-value=2.3e-16  Score=115.05  Aligned_cols=91  Identities=27%  Similarity=0.446  Sum_probs=77.8

Q ss_pred             EEEEEcceeccC-CceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC--CCCceEEEEEEEEEEcCCCCce
Q 021574          178 YVWKVENFSKLD-TRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST--VDGIKVYAEYTLRILDQLGAKH  254 (310)
Q Consensus       178 ~~~~i~~fs~~~-~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~--~~~w~~~~~~~~~l~n~~~~~~  254 (310)
                      ++|.|+||+.+. ++.+.|+.|.++|++|+|.+||+      ++|||+||.|.+..  ...|++.|+++|.|+||++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 78899999999999999999999      36999999998765  3379999999999999998655


Q ss_pred             eeecccceeeccCcCCcccccee
Q 021574          255 KSLQAAKDWFQSPNLTWGWTRFI  277 (310)
Q Consensus       255 ~~~~~~~~~F~~~~~~~G~~~fi  277 (310)
                       . ....+.|.. ..+|||.+||
T Consensus        76 -~-~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -S-KKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -e-eeeeEEEcC-CCccceeeEC
Confidence             2 345678875 6789999885

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7.4e-15  Score=136.37  Aligned_cols=129  Identities=29%  Similarity=0.553  Sum_probs=109.9

Q ss_pred             cCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC----C-CCceEEEEEEEEEEc
Q 021574          174 YSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST----V-DGIKVYAEYTLRILD  248 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~----~-~~w~~~~~~~~~l~n  248 (310)
                      ....++|+|++++.+.. +..||.|.+|++.|+|.++|+|+...   .+||||+....+    . ..|.|+|+|.|.|-|
T Consensus        37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~  112 (1089)
T COG5077          37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISN  112 (1089)
T ss_pred             hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence            45679999999999984 78999999999999999999998643   389999987654    2 359999999999999


Q ss_pred             CCCCceeeecccceeeccCcCCccccceecccccCCCCCC---eeECCEEEEEEEEEEEcc
Q 021574          249 QLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTG---FLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       249 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---~l~dD~l~i~~~V~v~~~  306 (310)
                      ...+.....+.+.++|+....+||+.+|+.+..|..|..|   |+.+|++.|++.|+|++.
T Consensus       113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            9875533336788999988899999999999999876554   789999999999999976

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.5e-14  Score=134.43  Aligned_cols=135  Identities=30%  Similarity=0.486  Sum_probs=111.5

Q ss_pred             ccccCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC---CCCcEEE
Q 021574           15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL---NFGLEVY   91 (310)
Q Consensus        15 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~---~~~w~~~   91 (310)
                      +.+....+++|+|++++.+.+     +..||+|.+||+.|+|.++|+|+.    ..-+|+||+....+..   ...|.|+
T Consensus        33 ~Ee~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~n----q~~~sVyLe~~pqe~e~~~gk~~~cc  103 (1089)
T COG5077          33 VEELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNN----QCNVSVYLEYEPQELEETGGKYYDCC  103 (1089)
T ss_pred             HHHHhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCC----ccccEEEEEeccchhhhhcCcchhhh
Confidence            345567899999999999965     678999999999999999999976    2239999998765422   2349999


Q ss_pred             EEEEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCC---eEEcCeEEEEEEEEE-Eee
Q 021574           92 AVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNG---YLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~---yl~~d~l~i~~~v~v-~~~  159 (310)
                      |+|-|.|-|+..+..... ....++|+.....||+.+||.+..|..|+.+   |+.++++.|.+.|+| +.+
T Consensus       104 aqFaf~Is~p~~pti~~i-N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         104 AQFAFDISNPKYPTIEYI-NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             hheeeecCCCCCCchhhh-hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            999999999888654332 3467899999999999999999998876654   899999999999999 654

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.13  E-value=3e-11  Score=106.85  Aligned_cols=263  Identities=26%  Similarity=0.314  Sum_probs=173.7

Q ss_pred             EEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEecCCC
Q 021574           25 VKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQD  104 (310)
Q Consensus        25 w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n~~~~  104 (310)
                      |.|.+|+...     ..++|..|..+|..|++.+||.|+       +++.|+.+....    +|.+.+.++|.+.|+...
T Consensus         8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~   71 (297)
T KOG1987|consen    8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSE   71 (297)
T ss_pred             eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCc
Confidence            8899999886     278999999999999999999974       789998887653    699999999999999998


Q ss_pred             ce-eEE-ecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-EeecCCcceEeE------eeEeccC
Q 021574          105 NY-LVV-QNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERNIGKGECLS------MEKFTYS  175 (310)
Q Consensus       105 ~~-~~~-~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~~~~~~~~~~------~~~~~~~  175 (310)
                      ++ ... .......|......||+..+++...+.+++.||+.++.+.+-+.+.| +..........+      ....+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~  151 (297)
T KOG1987|consen   72 KYLSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEV  151 (297)
T ss_pred             ceeeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhh
Confidence            65 332 12222233333679999999999999988899999999988888878 655221111110      0122333


Q ss_pred             ----cEEEEEEcceeccCC----ceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC----CCCceEEEEEE
Q 021574          176 ----SKYVWKVENFSKLDT----RYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST----VDGIKVYAEYT  243 (310)
Q Consensus       176 ----~~~~~~i~~fs~~~~----~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~----~~~w~~~~~~~  243 (310)
                          ..|+|.+.+++....    ....+..|..++..|++.++|.+....+..+++.+|......    ...-.+.....
T Consensus       152 ~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  231 (297)
T KOG1987|consen  152 LEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA  231 (297)
T ss_pred             HhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence                679999999998872    256667899999999999999998765556788888766532    11222233333


Q ss_pred             EEEEcCCCCc--e-eeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEE
Q 021574          244 LRILDQLGAK--H-KSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVL  304 (310)
Q Consensus       244 ~~l~n~~~~~--~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~  304 (310)
                      ...+|+-..+  + ...+....+.......+ ..++.++.++.....+++..+++.+++...++
T Consensus       232 ~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  294 (297)
T KOG1987|consen  232 GFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL  294 (297)
T ss_pred             cchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence            3445554421  1 11010101111111111 34455555555444567777777777766544

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.41  E-value=3.2e-06  Score=74.76  Aligned_cols=121  Identities=31%  Similarity=0.557  Sum_probs=96.4

Q ss_pred             EEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcCCCCce-eee
Q 021574          179 VWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQLGAKH-KSL  257 (310)
Q Consensus       179 ~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~~~~~~-~~~  257 (310)
                      .|.+.+++... ..++|..|..++..|++.+||.|+      +++.|+.+....  .|.+.+.++|.+.|+...+. ...
T Consensus         7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~v~n~~~~~~~~~~   77 (297)
T KOG1987|consen    7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP--GWERYAKLRLTVVNQKSEKYLSTV   77 (297)
T ss_pred             ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC--CcceeEEEEEEEccCCCcceeeee
Confidence            37788887776 678898999999999999999985      788888877643  79999999999999988754 331


Q ss_pred             cccceeeccC--cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccC
Q 021574          258 QAAKDWFQSP--NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSE  308 (310)
Q Consensus       258 ~~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~  308 (310)
                      ......|...  ...||+..+++...+.+.+.||++++.+++-+.+.|.+..+
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   78 EEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence            1344444433  56899999999999999889999998888888877776543

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5e-07  Score=92.40  Aligned_cols=130  Identities=23%  Similarity=0.307  Sum_probs=106.3

Q ss_pred             cEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCCCCce
Q 021574          176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQLGAKH  254 (310)
Q Consensus       176 ~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~~~~~  254 (310)
                      ...+|...+...+.. ...++.|..|+.+|++.+.|+++.   ...+++|+.|.... ...|++.+++.+.++|..++..
T Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~  102 (1093)
T KOG1863|consen   27 QSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLP  102 (1093)
T ss_pred             ccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCCcceEecchhhhccccCCCCch
Confidence            344455555555554 677888989999999999999883   35899999999876 4459999999999999444333


Q ss_pred             eeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574          255 KSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP  309 (310)
Q Consensus       255 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~  309 (310)
                      ...+...|.|.....+||+..|+.++++.+++.||+.+|++.++++|.+...++.
T Consensus       103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            3325678899988899999999999999999999999999999999999988775

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=7.2e-06  Score=84.07  Aligned_cols=128  Identities=20%  Similarity=0.226  Sum_probs=102.9

Q ss_pred             ceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEEEEEEe
Q 021574           21 AHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLD  100 (310)
Q Consensus        21 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~~l~n  100 (310)
                      ...+|...+......     ...|+.|..++.+|++.+.|+++.    ...+++|+.+...... ..|.+.+++.+.+.|
T Consensus        27 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~   96 (1093)
T KOG1863|consen   27 QSTTIDGIDDKSLLY-----RALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKN   96 (1093)
T ss_pred             ccccccCcCcchhhh-----HhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhcccc
Confidence            334455555544433     567888999999999999999863    5779999999988765 459999999999999


Q ss_pred             cCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574          101 QNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~  159 (310)
                      ..+.... ......|.|......||+..|+.++++.++..+|+.+|++.++++|.+ ...
T Consensus        97 ~~~~~~~-~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~  155 (1093)
T KOG1863|consen   97 TIDNLPD-PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPT  155 (1093)
T ss_pred             CCCCchh-hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCC
Confidence            4333332 234568899998899999999999999999999999999999999999 544

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.66  E-value=2.7e-05  Score=71.11  Aligned_cols=85  Identities=24%  Similarity=0.285  Sum_probs=72.9

Q ss_pred             cccCCceEEEEEccccccccc---cccceEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE
Q 021574           16 SHVSPAHYVVKIKSFSFLAEK---AVEVKYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE   89 (310)
Q Consensus        16 ~~~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~   89 (310)
                      .....|+..|+|.+++..+.+   +....++|++|..  .||+.+..+|-+|++ .+.+.++|+|+.++.++.+ ...|+
T Consensus       275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp  353 (391)
T KOG0297|consen  275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP  353 (391)
T ss_pred             hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence            344589999999999666543   3344889999974  999999999999987 6778899999999999988 78899


Q ss_pred             EEEEEEEEEEec
Q 021574           90 VYAVFRLFLLDQ  101 (310)
Q Consensus        90 ~~~~f~~~l~n~  101 (310)
                      ++-+.+|.|++|
T Consensus       354 f~~~v~~~l~dq  365 (391)
T KOG0297|consen  354 FRQKVTLMLLDQ  365 (391)
T ss_pred             CCCceEEEEecc
Confidence            999999999999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.08  E-value=0.00036  Score=63.81  Aligned_cols=76  Identities=29%  Similarity=0.447  Sum_probs=67.3

Q ss_pred             cCcEEEEEEcceeccC-------CceeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574          174 YSSKYVWKVENFSKLD-------TRYEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE  241 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~-------~~~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~  241 (310)
                      ..+...|+|.+++..+       ...++|+.|+.  .|++.+.++|-||++.+.+.++|+|+.++.++   ...|++.-.
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~  357 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK  357 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence            3689999999996554       35788998877  69999999999999988889999999999988   458999999


Q ss_pred             EEEEEEcC
Q 021574          242 YTLRILDQ  249 (310)
Q Consensus       242 ~~~~l~n~  249 (310)
                      +++.+++|
T Consensus       358 v~~~l~dq  365 (391)
T KOG0297|consen  358 VTLMLLDQ  365 (391)
T ss_pred             eEEEEecc
Confidence            99999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
4gjh_A	178	Crystal Structure Of The Traf Domain Of Traf5 Lengt		3e-05
1ca9_A	192	Structure Of Tnf Receptor Associated Factor 2 In Co		6e-05
1czz_A	187	Structure Of Tnf Receptor Associated Factor 2 In Co		9e-05
1ca4_A	168	Structure Of Tnf Receptor Associated Factor 2 (Traf		9e-05
1czy_A	168	Crystal Structure Of The Complex Between The Traf D		1e-04
2cr2_A	159	Solution Structure Of N-Terminal Domain Of Speckle-		1e-04
3ivb_A	145	Structures Of Spop-Substrate Complexes: Insights In		5e-04
3hql_A	145	Structures Of Spop-Substrate Complexes: Insights In		6e-04
3hqi_A	312	Structures Of Spop-Substrate Complexes: Insights In		8e-04

>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5 Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 21/156 (13%)
Query: 169 MEKFTYSSKYVWKVENFSKLDTRYEE-------SQVFGAGNHKWKIVL--YPRGNGCGDG 219
           +E   YS K +WKV ++        E       SQ F      +++    Y  G+G G G
Sbjct: 17  LEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKG 76
Query: 220 DHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAK-----DWFQSP---- 267
            HLSLY  +     D +         TL +LDQ G K+  ++  K       F+ P    
Sbjct: 77  THLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEM 136
Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303
           N+  G  RF+S S L      ++ +D   ++  V +
Sbjct: 137 NIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172

>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex With A Peptide From Tnf-R2 Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 158 ERNIG---------KGECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFG 199
           ER+IG         + + L ME  TY   ++WK+ +F++   R E          S  F 
Sbjct: 16  ERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFAR--KRQEAVAGRIPAIFSPAFY 73
Query: 200 AGNHKWKIVL--YPRGNGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKH 254
              + +K+ L  Y  G+G G G HLSL+  +     D +  +    + TL +LDQ   +H
Sbjct: 74  TSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREH 133
Query: 255 K----SLQAAKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
                        FQ P    N+  G   F   S++    + ++ +D   ++A V + G
Sbjct: 134 VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 191

>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex With A 17-Residue Cd40 Peptide Length = 187

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 34/179 (18%)
Query: 158 ERNIG---------KGECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFG 199
           ER+IG         + + L ME  TY   ++WK+ +F +   R E          S  F 
Sbjct: 11  ERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFPR--KRQEAVAGRIPAIFSPAFY 68
Query: 200 AGNHKWKIVL--YPRGNGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKH 254
              + +K+ L  Y  G+G G G HLSL+  +     D +  +    + TL +LDQ   +H
Sbjct: 69  TSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREH 128
Query: 255 K----SLQAAKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
                        FQ P    N+  G   F   S++    + ++ +D   ++A V + G
Sbjct: 129 VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 186

>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 25/163 (15%)
Query: 165 ECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFGAGNHKWKIVL--YPRG 213
           + L ME  TY   ++WK+ +F++   R E          S  F    + +K+ L  Y  G
Sbjct: 8   KVLEMEASTYDGVFIWKISDFAR--KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNG 65
Query: 214 NGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHK----SLQAAKDWFQS 266
           +G G G HLSL+  +     D +  +    + TL +LDQ   +H             FQ 
Sbjct: 66  DGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQR 125
Query: 267 P----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           P    N+  G   F   S++    + ++ +D   ++A V + G
Sbjct: 126 PVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 167

>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain Of Human Traf2 And An Lmp1 Binding Peptide Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 165 ECLSMEKFTYSSKYVWKVENFSKLDTRYEE---------SQVFGAGNHKWKIVL--YPRG 213
           + L ME  TY   ++WK+ +F +   R E          S  F    + +K+ L  Y  G
Sbjct: 8   KVLEMEASTYDGVFIWKISDFPR--KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNG 65
Query: 214 NGCGDGDHLSLYLALGDSTVDGIKVYA---EYTLRILDQLGAKHK----SLQAAKDWFQS 266
           +G G G HLSL+  +     D +  +    + TL +LDQ   +H             FQ 
Sbjct: 66  DGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQR 125
Query: 267 P----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           P    N+  G   F   S++    + ++ +D   ++A V + G
Sbjct: 126 PVNDMNIASGCPLFCPVSKMEAKNS-YVRDDAIFIKAIVDLTG 167

>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 14  STSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNV 68
           S+  V    Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G   ESK+ 
Sbjct: 5   SSGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDY 63
Query: 69  KDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQ 128
                L ++   +       EV A F+  +L+   +    +++ +  RF   K +WGF +
Sbjct: 64  LSLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKK 115
Query: 129 FISHKAFKEASNGYLVEDTCVFGAEVFVKERNI 161
           FI      + +NG L +D      EV V + ++
Sbjct: 116 FIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV 148

>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 15  TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVK 69
           +  V    Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G   ESK+  
Sbjct: 5   SGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYL 63
Query: 70  DHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQF 129
               L ++   +       EV A F+  +L+   +    +++ +  RF   K +WGF +F
Sbjct: 64  SLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKF 115
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFV 156
           I      + +NG L +D      EV V
Sbjct: 116 IRRDFLLDEANGLLPDDKLTLFCEVSV 142

>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 15  TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVK 69
           +  V    Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G   ESK+  
Sbjct: 5   SGKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYL 63
Query: 70  DHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQF 129
               L ++   +       EV A F+  +L+   +    +++ +  RF   K +WGF +F
Sbjct: 64  SLYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKF 115
Query: 130 ISHKAFKEASNGYLVEDTCVFGAEVFV 156
           I      + +NG L +D      EV V
Sbjct: 116 IRRGFLLDEANGLLPDDKLTLFCEVSV 142

>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 16  SHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNG--NESKNVKD 70
           S V    Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G   ESK+   
Sbjct: 2   SKVVKFSYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71  HISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFI 130
              L ++   +       EV A F+  +L+   +    +++ +  RF   K +WGF +FI
Sbjct: 61  LYLLLVSCPKS-------EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFI 112
Query: 131 SHKAFKEASNGYLVEDTCVFGAEVFVKERNI 161
                 + +NG L +D      EV V + ++
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSV 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-33
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-24
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	1e-33
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-30
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	4e-25
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	3e-16
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-24
1d00_A	168	Tumor necrosis factor receptor associated protein	6e-16
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-23
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	3e-15
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	4e-23
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	1e-15
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	1e-22
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-15
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	9e-21
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-15
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	7e-20
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	2e-18

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score =  119 bits (300), Expect = 1e-33
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 173 TYSSKYVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYL 226
                Y+W + NFS       E   S  F +G +   KW + + P+G      D+LSLYL
Sbjct: 8   VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 67

Query: 227 ALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPG 286
            L        +V A++   IL+  G + K++++ + +       WG+ +FI    L    
Sbjct: 68  LLVSC--PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEA 125

Query: 287 TGFLVNDVCVVEAEVTVL 304
            G L +D   +  EV+V+
Sbjct: 126 NGLLPDDKLTLFCEVSVV 143

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 95.8 bits (238), Expect = 1e-24
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 22  HYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAM 78
            Y+  I +FSF  E+  E   +S+ F +G     KW L + P G + ++ KD++SLYL +
Sbjct: 12  SYMWTINNFSFCREEMGE-VIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLL 69

Query: 79  ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA 138
                     EV A F+  +L+   +    +++ +  RF     +WGF +FI      + 
Sbjct: 70  VSCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDE 124

Query: 139 SNGYLVEDTCVFGAEVFV 156
           +NG L +D      EV V
Sbjct: 125 ANGLLPDDKLTLFCEVSV 142

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  119 bits (301), Expect = 1e-33
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGD-GDHLSLYL-ALGDSTV 233
           + + + VE FS+L      S      N  WKI++ PR          +  +L    +S  
Sbjct: 19  ATFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 77

Query: 234 DGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVND 293
                +A+  L+I++    +    +     F      WG++ F+++SE+  P  GF+ +D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 294 VCVVEAEVTV 303
               E  V  
Sbjct: 138 KVTFEVFVQA 147

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  111 bits (278), Expect = 3e-30
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 6   VNKDAIARSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNES 65
             ++ +   TS  S A +   ++ FS L+E        S         WK+++ P     
Sbjct: 4   TAEEDMEDDTSWRSEATFQFTVERFSRLSES-----VLSPPCFVRNLPWKIMVMPRFYPD 58

Query: 66  KNVKDHISLYLAMADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWG 125
           +  +  +  +L   +  S +     +A   L +++   D     +      F+    +WG
Sbjct: 59  RPHQKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEN-DWG 116

Query: 126 FDQFISHKAFKEASNGYLVEDTCVFGAEVFVKE 158
           F  F++     +   G++ +D   F   V    
Sbjct: 117 FSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 98.5 bits (245), Expect = 4e-25
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 21/158 (13%)

Query: 168 SMEKFTYSSKYVWKVENFSKL-------DTRYEESQVF--GAGNHKWKIVLYPRGNGCGD 218
            ME  TY   ++WK+ +F++              S  F      +K  + +Y  G+G G 
Sbjct: 35  EMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR 94

Query: 219 GDHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAKD----WFQSP---- 267
           G HLSL+  +     D +       + TL +LDQ   +H       D     FQ P    
Sbjct: 95  GTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDM 154

Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           N+  G   F   S++      ++ +D   ++A V + G
Sbjct: 155 NIASGCPLFCPVSKMEAKN-SYVRDDAIFIKAIVDLTG 191

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 15/146 (10%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
            ++ KI  F+   ++AV        S AF     GYK  L +Y NG+       H+SL+ 
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 102

Query: 77  AMADT-NSLNFGLEVYAVFRLFLLDQNQDNYLV-------VQNAKERRFNGLKLEWGFDQ 128
            +    N             L LLDQN   +++         ++ +R  N + +  G   
Sbjct: 103 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 162

Query: 129 FISHKAFKEASNGYLVEDTCVFGAEV 154
           F       EA N Y+ +D     A V
Sbjct: 163 FCPVSKM-EAKNSYVRDDAIFIKAIV 187

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 21/158 (13%)

Query: 168 SMEKFTYSSKYVWKVENFSKL-------DTRYEESQVFGAGN--HKWKIVLYPRGNGCGD 218
            ME  TY   ++WK+ +F++              S  F      +K  + +Y  G+G G 
Sbjct: 11  EMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR 70

Query: 219 GDHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAKD----WFQSP---- 267
           G HLSL+  +     D +       + TL +LDQ   +H       D     FQ P    
Sbjct: 71  GTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDM 130

Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
           N+  G   F   S++      ++ +D   ++A V + G
Sbjct: 131 NIASGCPLFCPVSKMEAKN-SYVRDDAIFIKAIVDLTG 167

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 73.1 bits (179), Expect = 6e-16
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 15/146 (10%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
            ++ KI  F+   ++AV        S AF     GYK  L +Y NG+       H+SL+ 
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGD-GTGRGTHLSLFF 78

Query: 77  AMADT-NSLNFGLEVYAVFRLFLLDQNQDNYLVV-------QNAKERRFNGLKLEWGFDQ 128
            +    N             L LLDQN   +++         ++ +R  N + +  G   
Sbjct: 79  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138

Query: 129 FISHKAFKEASNGYLVEDTCVFGAEV 154
           F       EA N Y+ +D     A V
Sbjct: 139 FCPVSKM-EAKNSYVRDDAIFIKAIV 163

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 95.5 bits (237), Expect = 2e-23
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 168 SMEKFTYSSKYVWKVENFSKL-------DTRYEESQVF--GAGNHKWKIVLYPRGNGCGD 218
            +E  +Y+   +WK+ ++ +         T    SQ F  G   +K    +Y  G+G G 
Sbjct: 68  VLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK 127

Query: 219 GDHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAK-----DWFQSP--- 267
           G HLSL+  +     D +       + TL ++DQ  ++     A K       F+ P   
Sbjct: 128 GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGE 187

Query: 268 -NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309
            N+  G   F++ + L      ++ +D   ++  V      +P
Sbjct: 188 MNIASGCPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 228

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 72.8 bits (178), Expect = 3e-15
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
             + KI+ +    ++AV    +   S  F  G  GYK    +Y NG+       H+SL+ 
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 135

Query: 77  A-MADTNSLNFGLEVYAVFRLFLLDQNQDNYLVV--------QNAKERRFNGLKLEWGFD 127
             M                 L L+DQ      +          ++ ++    + +  G  
Sbjct: 136 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 195

Query: 128 QFISHKAFKEASNGYLVEDTCVFGAEV 154
            F++    +  +  Y+ +DT      V
Sbjct: 196 VFVAQTVLE--NGTYIKDDTIFIKVIV 220

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 93.5 bits (232), Expect = 4e-23
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 168 SMEKFTYSSKYVWKVENFSKL-------DTRYEESQVF--GAGNHKWKIVLYPRGNGCGD 218
            +E  +Y+   +WK+ ++ +         T    SQ F  G   +K    +Y  G+G G 
Sbjct: 32  VLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK 91

Query: 219 GDHLSLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAKDW-----FQSP--- 267
           G HLSL+  +     D +       + TL ++DQ  ++     A K       F+ P   
Sbjct: 92  GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGE 151

Query: 268 -NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309
            N+  G   F++ + L      ++ +D   ++  V      +P
Sbjct: 152 MNIASGCPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 192

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
             + KI+ +    ++AV    +   S  F  G  GYK    +Y NG+       H+SL+ 
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 99

Query: 77  A-MADTNSLNFGLEVYAVFRLFLLDQNQDNYLVV--------QNAKERRFNGLKLEWGFD 127
             M                 L L+DQ      +          ++ ++    + +  G  
Sbjct: 100 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 159

Query: 128 QFISHKAFKEASNGYLVEDTCVFGAEV 154
            F++    +  +  Y+ +DT      V
Sbjct: 160 VFVAQTVLE--NGTYIKDDTIFIKVIV 184

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 95.0 bits (236), Expect = 1e-22
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 173 TYSSKYVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYL 226
                Y+W + NFS       E   S  F +G +   KW + + P+G      D+LSLYL
Sbjct: 4   VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 63

Query: 227 ALGDSTVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPG 286
            L       ++  A++   IL+  G + K++++ + +       WG+ +FI    L    
Sbjct: 64  LLVSCPKSEVR--AKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEA 121

Query: 287 TGFLVNDVCVVEAEVTV 303
            G L +D   +  EV+V
Sbjct: 122 NGLLPDDKLTLFCEVSV 138

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 22  HYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAM 78
            Y+  I +FSF  E+  EV  +S+ F +G     KW L + P G + ++ KD++SLYL +
Sbjct: 8   SYMWTINNFSFCREEMGEV-IKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLL 65

Query: 79  ADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEA 138
                     EV A F+  +L+   +    +++ +  RF   K +WGF +FI      + 
Sbjct: 66  VSCPKS----EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFIRRGFLLDE 120

Query: 139 SNGYLVEDTCVFGAEVFV 156
           +NG L +D      EV V
Sbjct: 121 ANGLLPDDKLTLFCEVSV 138

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 91.2 bits (226), Expect = 9e-21
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 176 SKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCGDG-DHLSLYL-ALGDSTV 233
           + + + VE FS+L      S      N  WKI++ PR          +  +L    +S  
Sbjct: 31  ATFQFTVERFSRLSES-VLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 89

Query: 234 DGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVND 293
                +A+  L+I++    +    +     F      WG++ F+++SE+  P  GF+ +D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 294 VCVVEAEVTV 303
               E  V  
Sbjct: 150 KVTFEVFVQA 159

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 19  SPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYL-A 77
           S A +   ++ FS L+E  +     S         WK+++ P     +  +  +  +L  
Sbjct: 29  SEATFQFTVERFSRLSESVL-----SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC 83

Query: 78  MADTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKE 137
            A+++S ++    +A   L +++   D     +      F   + +WGF  F++     +
Sbjct: 84  NAESDSTSWS--CHAQAVLKIINYRDDEKSFSRRISH-LFFHKENDWGFSNFMAWSEVTD 140

Query: 138 ASNGYLVEDTCVFGAEVFVKERN 160
              G++ +D   F   V     +
Sbjct: 141 PEKGFIDDDKVTFEVFVQADAPH 163

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 83.8 bits (207), Expect = 7e-20
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 27/156 (17%)

Query: 173 TYSSKYVWKVENFSKL-------DTRYEESQVF--GAGNHKWKIVLYPRGNGCGD-GDHL 222
             +  Y+WK+ NF                S  F  G   +K  + L+ +        +++
Sbjct: 2   QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYI 61

Query: 223 SLYLALGDSTVDGI---KVYAEYTLRILDQLGAKHK-------SLQAAKDWFQSP----- 267
           SL++       D            L ILDQ  A  +         +     FQ P     
Sbjct: 62  SLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRN 121

Query: 268 NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTV 303
              +G+  F+    L +    F+ +D  +V  EV+ 
Sbjct: 122 PKGFGYVTFMHLEALRQR--TFIKDDTLLVRCEVST 155

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 80.0 bits (197), Expect = 2e-18
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
            Y+ KI +F    +   E   V   S  F  G  GYK  + L+     ++   ++ISL++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 77  AMADT-NSLNFGLEVYAVFRLFLLDQNQDN------YLVVQNAKERRFNGLKLE-----W 124
                    +         RL +LDQ++         ++    +   F    +      +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 125 GFDQFISHKAFKEASNGYLVEDTCVFGAEVFVK 157
           G+  F+  +A +     ++ +DT +   EV  +
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEVSTR 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.97
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.96
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.96
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.95
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.95
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.95
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.94
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
1d00_A	168	Tumor necrosis factor receptor associated protein	99.94
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.94
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.94
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.93
1d00_A	168	Tumor necrosis factor receptor associated protein	99.93
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.93
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.93
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.92
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.91
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.56
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.5

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=1e-30  Score=205.55  Aligned_cols=137  Identities=29%  Similarity=0.506  Sum_probs=117.7

Q ss_pred             ccccccCCceEEEEEccccccccccccceEEeccEEeCCe---EEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcE
Q 021574           13 RSTSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGY---KWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLE   89 (310)
Q Consensus        13 ~~~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~---~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~   89 (310)
                      +.|.++..++|+|+|+|||.+++. .+..++|++|.+|||   +|+|.+||+|+. .+..+|||+||.|.+..    .|+
T Consensus         3 ~~m~~~~~~~~~w~I~~fs~~~~~-~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~----~w~   76 (145)
T 3ivv_A            3 GGSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSE   76 (145)
T ss_dssp             --CCCCCEEEEEEEESSGGGCCCC-TTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEECS----SSE
T ss_pred             CCCCcEEEEEEEEEEcCchHHhhc-CCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCCC----CCc
Confidence            578889999999999999999752 333899999999995   999999999987 45679999999998763    599


Q ss_pred             EEEEEEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           90 VYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        90 ~~~~f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      ++|+|+|+|+||.++..........+.|.. ..+|||.+||++++|++++++||.||+|+|+|+|+|
T Consensus        77 v~a~f~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V  142 (145)
T 3ivv_A           77 VRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  142 (145)
T ss_dssp             EEEEEEEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred             EEEEEEEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence            999999999999998765443445778874 589999999999999877899999999999999998

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.97  E-value=1.5e-30  Score=206.98  Aligned_cols=136  Identities=21%  Similarity=0.336  Sum_probs=116.1

Q ss_pred             ccCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCC-CCCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCC
Q 021574          173 TYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGC-GDGDHLSLYLALGDST-VDGIKVYAEYTLRILDQL  250 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~-~~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~  250 (310)
                      ...+.|+|+|+||+.++ +.++|++|.+||++|+|++||+|+.. +.+++||+||+|.... ...|++.|+|+|.|+||+
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~   94 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR   94 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCC
Confidence            35688999999999996 78999999999999999999999765 3568999999997544 457999999999999998


Q ss_pred             CCc-eeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCCC
Q 021574          251 GAK-HKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEPL  310 (310)
Q Consensus       251 ~~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~~  310 (310)
                      ++. +.. +...++|.....+|||++||+|++|+++++|||+||+|+|+|+|+|.+++|-|
T Consensus        95 ~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           95 DDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             CGGGCEE-EEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCcceEE-eccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            875 333 45678898767889999999999999888999999999999999999999965

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=3.4e-29  Score=199.19  Aligned_cols=134  Identities=18%  Similarity=0.291  Sum_probs=112.2

Q ss_pred             cCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCC-CCCCeEEEEEEEecCCCCCCCcEEEEEEEE
Q 021574           18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESK-NVKDHISLYLAMADTNSLNFGLEVYAVFRL   96 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~f~~   96 (310)
                      ...++|+|+|+|||.++    + .++|++|.++|++|+|.+||+|+. . +..+|||+||.|... .++..|++.|+|+|
T Consensus        16 ~~~~~~~w~I~nfS~~~----~-~~~S~~f~~gg~~W~i~~yP~G~~-~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l   88 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS----E-SVLSPPCFVRNLPWKIMVMPRFYP-DRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVL   88 (155)
T ss_dssp             CSEEEEEEEESSGGGCC----S-CEECCCEEETTEEEEEEEEEEC-------CBEEEEEEEESTT-CCCSSCEEEEEEEE
T ss_pred             CCCcEEEEEECChhhcC----C-ceEcCCEEECCccEEEEEEECCCC-CCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEE
Confidence            45799999999999994    2 899999999999999999999976 3 357899999999654 34677999999999


Q ss_pred             EEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574           97 FLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus        97 ~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~  159 (310)
                      +|+||+++..... ....+.|.....+|||.+||++++|++++++||.||+|+|+|+|+| ++.
T Consensus        89 ~l~~~~~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A           89 KIINYRDDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             EECCSSCGGGCEE-EEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             EEEcCCCCcceEE-eccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            9999998753332 2356788876789999999999999988899999999999999999 554

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.96  E-value=7e-30  Score=207.33  Aligned_cols=145  Identities=20%  Similarity=0.331  Sum_probs=118.8

Q ss_pred             ccccccccCCceEEEEEcccccccc---ccccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-
Q 021574           11 IARSTSHVSPAHYVVKIKSFSFLAE---KAVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-   84 (310)
Q Consensus        11 ~~~~~~~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-   84 (310)
                      +......+..|+|+|+|+|||.+++   .+.+..++|++|.+|  ||+|+|.+||+|+. .+..+|||+||.|++++.+ 
T Consensus        14 ~~~~~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~   92 (178)
T 4gjh_A           14 FKQLEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDS   92 (178)
T ss_dssp             HHHHHHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGG
T ss_pred             HHHhcCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCc
Confidence            3334456789999999999999976   333337999999999  99999999999987 4567999999999887653 


Q ss_pred             CCCcEEEEEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           85 NFGLEVYAVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        85 ~~~w~~~~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      ...|++.|+|+|+|+||.++......    +...+.|..    .+.+|||.+||++++|++++++||+||+|+|+|+|.|
T Consensus        93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A           93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            46799999999999999987543321    113456763    3568999999999999977799999999999999987

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.96  E-value=3.3e-29  Score=196.95  Aligned_cols=131  Identities=28%  Similarity=0.475  Sum_probs=113.0

Q ss_pred             ccCcEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEE
Q 021574          173 TYSSKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRI  246 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l  246 (310)
                      ...+.|+|+|.||+.++   ++.+.|++|.+||+   +|+|++||+|+..++++|||+||+|...  +.|++.|+|+|.|
T Consensus         8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~l   85 (145)
T 3ivv_A            8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSI   85 (145)
T ss_dssp             CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEEE
T ss_pred             EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEEE
Confidence            45688999999999987   47899999999996   9999999999877667899999999875  3799999999999


Q ss_pred             EcCCCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574          247 LDQLGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       247 ~n~~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~  306 (310)
                      +||+++..... ....++|. ...+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus        86 lnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           86 LNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             ECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            99998764431 33567886 4678999999999999876689999999999999999863

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.95  E-value=4.5e-29  Score=205.14  Aligned_cols=141  Identities=17%  Similarity=0.256  Sum_probs=115.0

Q ss_pred             cccCCceEEEEEcccccccc---ccccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcE
Q 021574           16 SHVSPAHYVVKIKSFSFLAE---KAVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLE   89 (310)
Q Consensus        16 ~~~~~~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~   89 (310)
                      ..+..|+|+|+|+|||.+++   .+.+..++|++|.+|  ||+|+|.+||+|+. .+..+|||+||.+++++.+ ...|+
T Consensus        35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp  113 (198)
T 4ghu_A           35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP  113 (198)
T ss_dssp             TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred             ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence            35678999999999999976   344458999999999  99999999999987 4567899999999988765 56899


Q ss_pred             EEEEEEEEEEecCCCceeEEe----cce----eeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574           90 VYAVFRLFLLDQNQDNYLVVQ----NAK----ERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus        90 ~~~~f~~~l~n~~~~~~~~~~----~~~----~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~  159 (310)
                      +.|+|+|+|+||.++......    +..    .+.|...+.+|||.+||++++|+  +++||+||+|+|+|+|.| ..+
T Consensus       114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred             EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence            999999999999976543321    111    12233446789999999999999  589999999999999998 444

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.95  E-value=5.8e-28  Score=192.96  Aligned_cols=137  Identities=20%  Similarity=0.277  Sum_probs=108.8

Q ss_pred             cCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE
Q 021574           18 VSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY   91 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~   91 (310)
                      ...++|+|+|+|||.+++ .+.+.  .++|++|.+|  ||+|+|.+||+|++.+...+|||+||.+++++.+ ...|+++
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            457999999999999975 34444  7999999999  9999999999997622247899999999987765 5679999


Q ss_pred             EEEEEEEEecCCCce--eEE----ecceeeeecC-----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           92 AVFRLFLLDQNQDNY--LVV----QNAKERRFNG-----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~--~~~----~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      |+|+|+|+||.+...  ...    .+.....|..     ...+|||.+||++++|+  +++||+||+|+|+|+|.|
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v  155 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVST  155 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEE
Confidence            999999999987621  110    0111223432     12479999999999999  689999999999999998

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.95  E-value=1.9e-28  Score=198.90  Aligned_cols=134  Identities=27%  Similarity=0.415  Sum_probs=112.0

Q ss_pred             ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574          173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      +..+.|+|+|.||+.+++       ..+.|++|++|  |++|+|++||+|++.+.++|||+||+|.+++   ...|++.|
T Consensus        21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a  100 (178)
T 4gjh_A           21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ  100 (178)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred             ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence            567999999999999863       27999999999  9999999999998876678999999998765   24799999


Q ss_pred             EEEEEEEcCCCCceeeecc-----cceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574          241 EYTLRILDQLGAKHKSLQA-----AKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       241 ~~~~~l~n~~~~~~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~  306 (310)
                      +|+|.|+||.++.......     ..+.|..    .+.+|||++||++++|+++.+|||+||+|+|+|+|.|.+.
T Consensus       101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            9999999998764221111     3456763    3468999999999999988889999999999999987654

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=6.6e-28  Score=197.87  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=112.0

Q ss_pred             cCCceEEEEEcccccccc-ccccc--eEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE
Q 021574           18 VSPAHYVVKIKSFSFLAE-KAVEV--KYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY   91 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~   91 (310)
                      ...++|+|+|+|||.+++ .+.+.  .++|++|.+|  ||+|+|.+||+|++ .+..+|||+||.+++++.+ ...|++.
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~  115 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK  115 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence            478999999999999974 33343  4999999999  99999999999986 4567999999999988765 5689999


Q ss_pred             EEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           92 AVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      |+|+|+|+||.+.......    +...+.|..    .+.+|||.+||++++|+  +++||+||+|+|+|+|.|
T Consensus       116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECC
T ss_pred             EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEc
Confidence            9999999999987543321    112245754    24689999999999999  469999999999999987

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.94  E-value=1.8e-27  Score=195.64  Aligned_cols=137  Identities=22%  Similarity=0.315  Sum_probs=111.6

Q ss_pred             cCCceEEEEEccccccccc-cccc--eEEeccEEe--CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEEE
Q 021574           18 VSPAHYVVKIKSFSFLAEK-AVEV--KYESAAFEA--GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEVY   91 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~~-~~~~--~~~S~~f~~--~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~~   91 (310)
                      ...++|+|+|+|||.+++. +.+.  .++|++|.+  |||+|+|.+||+|++ .+..+|||+||.+.++..++ ..|++.
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~  118 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN  118 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence            5789999999999999753 3332  599999999  999999999999986 45678999999999886654 789999


Q ss_pred             EEEEEEEEecCCCceeEEe---cceeeeec----CCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           92 AVFRLFLLDQNQDNYLVVQ---NAKERRFN----GLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~~~~~---~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      |+|+|+|+||.++......   +.....|.    ..+.+|||.+||++++|++ +++||+||+|+|+|+|.|
T Consensus       119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V  189 (192)
T 1ca9_A          119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL  189 (192)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred             EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence            9999999999988543210   11123454    2346899999999999986 579999999999999987

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=3.9e-27  Score=208.51  Aligned_cols=179  Identities=25%  Similarity=0.407  Sum_probs=130.3

Q ss_pred             ccCCceEEEEEccccccccccccceEEeccEEeCCe---EEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEE
Q 021574           17 HVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGY---KWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAV   93 (310)
Q Consensus        17 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~---~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~   93 (310)
                      ++..++|+|+|.|||.++. +.++.++|++|.+||+   +|+|.+||+|+. +++.+|+|+||.|.++.    .|++.|+
T Consensus         3 ~~~~~~~~w~I~nfs~~~~-~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~   76 (312)
T 3hqi_A            3 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAK   76 (312)
T ss_dssp             EEEEEEEEEEETTGGGCCC-CTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEE
T ss_pred             ceEEEEEEEEEcCcchhhh-cCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEE
Confidence            4567899999999999963 3344999999999995   999999999987 56779999999998764    5899999


Q ss_pred             EEEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eeec-CCcceEeEeeE
Q 021574           94 FRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KERN-IGKGECLSMEK  171 (310)
Q Consensus        94 f~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~~-~~~~~~~~~~~  171 (310)
                      |+|+|+|++++..........+.|.. +.+|||.+||++++|++++++||.||+|+|+|+|.| +... ....+....+.
T Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~  155 (312)
T 3hqi_A           77 FKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK  155 (312)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred             EEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence            99999999998765544456788886 468999999999999877889999999999999999 5431 11111112233


Q ss_pred             eccCcEEEEEEcceeccC-CceeecceEEeCCceEE
Q 021574          172 FTYSSKYVWKVENFSKLD-TRYEESQVFGAGNHKWK  206 (310)
Q Consensus       172 ~~~~~~~~~~i~~fs~~~-~~~~~S~~f~~gg~~w~  206 (310)
                      .|++..    ..++..+. .....+.++.++|..+.
T Consensus       156 ~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~  187 (312)
T 3hqi_A          156 VPECRL----ADELGGLWENSRFTDCCLCVAGQEFQ  187 (312)
T ss_dssp             CCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred             CCCchH----HHHHHHHHhCCCCCceEEEECCEEEe
Confidence            333322    14455544 23344557788876543

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.94  E-value=2.9e-27  Score=190.52  Aligned_cols=138  Identities=22%  Similarity=0.306  Sum_probs=110.6

Q ss_pred             ccCCceEEEEEccccccccc-cccc--eEEeccEE--eCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCC-CCcEE
Q 021574           17 HVSPAHYVVKIKSFSFLAEK-AVEV--KYESAAFE--AGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLN-FGLEV   90 (310)
Q Consensus        17 ~~~~~~~~w~I~~fs~~~~~-~~~~--~~~S~~f~--~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~-~~w~~   90 (310)
                      ....++|+|+|+|||.+++. +.+.  .++|++|.  +|||+|+|.+||+|+. .+..+|||+||.++++..++ ..|++
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~   93 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF   93 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence            45789999999999999763 2332  39999996  7899999999999986 45679999999999876653 78999


Q ss_pred             EEEEEEEEEecCCCceeEEe---cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           91 YAVFRLFLLDQNQDNYLVVQ---NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        91 ~~~f~~~l~n~~~~~~~~~~---~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      .|+|+|+|+||.+.......   +.....|..    .+.+|||.+||++++|+++ ++||+||+|+|+|+|.|
T Consensus        94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v  165 (168)
T 1d00_A           94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL  165 (168)
T ss_dssp             CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred             EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence            99999999999987533211   001235653    3578999999999999953 39999999999999987

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=2e-27  Score=195.32  Aligned_cols=134  Identities=23%  Similarity=0.375  Sum_probs=110.2

Q ss_pred             ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574          173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      +..+.|+|+|.||+.+++       +.+.|++|++|  |++|+|++||+|++.+.++|||+||.+.+++   ...|++.|
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a  116 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence            567999999999999863       57999999999  9999999999998876678999999998776   34899999


Q ss_pred             EEEEEEEcCCCCc-eeeecc---------cceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574          241 EYTLRILDQLGAK-HKSLQA---------AKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP  309 (310)
Q Consensus       241 ~~~~~l~n~~~~~-~~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~  309 (310)
                      +|+|.|+||.+.. +.. ..         ..+.|...+.+|||++||++++|++  +|||+||+|+|+|+|+|+...+|
T Consensus       117 ~~~l~Lldq~~~~~~~~-~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~~  192 (198)
T 4ghu_A          117 KVTLMLMDQGSSRRHLG-DAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPDP  192 (198)
T ss_dssp             CEEEEECCCSTTCCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC--
T ss_pred             EEEEEEEcCCCCccceE-EEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCCC
Confidence            9999999998653 222 11         1112333456899999999999996  79999999999999999877655

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.94  E-value=2.8e-27  Score=199.10  Aligned_cols=137  Identities=18%  Similarity=0.294  Sum_probs=112.6

Q ss_pred             ccCCceEEEEEccccccccc-ccc--ceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEE
Q 021574           17 HVSPAHYVVKIKSFSFLAEK-AVE--VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEV   90 (310)
Q Consensus        17 ~~~~~~~~w~I~~fs~~~~~-~~~--~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~   90 (310)
                      ....++|+|+|+|||.+++. +.+  ..++|++|.+|  ||+|+|.+||+|++ .+..+|||+||.+++++.+ ...|++
T Consensus        72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~  150 (228)
T 1flk_A           72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF  150 (228)
T ss_dssp             CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred             cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence            35789999999999999752 222  27999999999  99999999999987 4677999999999987765 568999


Q ss_pred             EEEEEEEEEecCCCceeEEe----cceeeeecC----CccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           91 YAVFRLFLLDQNQDNYLVVQ----NAKERRFNG----LKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        91 ~~~f~~~l~n~~~~~~~~~~----~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      .|+|+|+|+||.+.......    +...+.|..    .+.+|||.+||++++|+  +++||+||+|+|+|+|.|
T Consensus       151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred             EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence            99999999999987643321    122334642    35689999999999999  589999999999999988

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.93  E-value=3.6e-27  Score=193.83  Aligned_cols=131  Identities=27%  Similarity=0.423  Sum_probs=108.9

Q ss_pred             ccCcEEEEEEcceeccCC-----c--eeecceEEe--CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEE
Q 021574          173 TYSSKYVWKVENFSKLDT-----R--YEESQVFGA--GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~-----~--~~~S~~f~~--gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~  240 (310)
                      +..+.|+|+|.||+.+++     +  .++|++|.+  ||++|+|++||+|++.+.++|||+||++..++ .  ..|++.|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            567999999999999873     2  599999999  99999999999998766678999999998875 2  6899999


Q ss_pred             EEEEEEEcCCCCceeeecc-----cceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574          241 EYTLRILDQLGAKHKSLQA-----AKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG  305 (310)
Q Consensus       241 ~~~~~l~n~~~~~~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~  305 (310)
                      +|+|.|+||+++++.. ..     ....|..    .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~-~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceee-EeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            9999999999875432 11     1223542    346899999999999995 37999999999999998854

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.93  E-value=6.8e-27  Score=188.36  Aligned_cols=131  Identities=27%  Similarity=0.414  Sum_probs=108.0

Q ss_pred             ccCcEEEEEEcceeccCC-----c--eeecceEE--eCCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC-C--CCceEEE
Q 021574          173 TYSSKYVWKVENFSKLDT-----R--YEESQVFG--AGNHKWKIVLYPRGNGCGDGDHLSLYLALGDST-V--DGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~-----~--~~~S~~f~--~gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~-~--~~w~~~~  240 (310)
                      ...+.|+|+|.||+.+++     +  .++|++|+  +||++|+|++||+|++.+.++|||+||+|.+++ .  ..|++.+
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            367899999999999872     2  38999996  789999999999998766678999999998866 2  5899999


Q ss_pred             EEEEEEEcCCCCceeeeccc-----ceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEc
Q 021574          241 EYTLRILDQLGAKHKSLQAA-----KDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLG  305 (310)
Q Consensus       241 ~~~~~l~n~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~  305 (310)
                      +|+|.|+||++.++.. ...     ...|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        96 ~~~l~ll~q~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           96 KVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccce-eccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            9999999999876443 111     234643    3568999999999999974 4999999999999998753

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.93  E-value=2.7e-26  Score=183.24  Aligned_cols=130  Identities=22%  Similarity=0.272  Sum_probs=102.8

Q ss_pred             cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCC-CCCeEEEEEEeCCCC---CCCceEEE
Q 021574          174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCG-DGDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~-~~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      ..+.|+|+|.||+.++     ++  .+.|++|++|  |++|+|++||+|++.+ +++|||+||++++++   ..+|++.|
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            4578999999999986     33  7999999999  9999999999998754 368999999998765   34699999


Q ss_pred             EEEEEEEcCCCCc---eeeecc-----cceeeccC-----cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574          241 EYTLRILDQLGAK---HKSLQA-----AKDWFQSP-----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       241 ~~~~~l~n~~~~~---~~~~~~-----~~~~F~~~-----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~  306 (310)
                      +|+|.|+||.+..   +.. ..     ....|...     ..+|||++||++++|++  +|||+||+|+|+|+|+|+.+
T Consensus        83 ~~~l~lldq~~~~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           83 TIRLTILDQSEAPVRQNHE-EIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEEEECCCSCTTSCCCEE-EEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eEEEEEEcCCCccccccce-EEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            9999999998652   111 11     11234321     23799999999999995  78999999999999999764

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.93  E-value=8.7e-27  Score=191.18  Aligned_cols=131  Identities=24%  Similarity=0.419  Sum_probs=108.6

Q ss_pred             cCcEEEEEEcceeccC-----Cc--eeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEE
Q 021574          174 YSSKYVWKVENFSKLD-----TR--YEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAE  241 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~-----~~--~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~  241 (310)
                      ..+.|+|+|.|||.++     ++  .++|++|++|  |++|+|++||+|++.++++|||+||++.+++   ...|++.++
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~  117 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  117 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence            5789999999999986     33  5999999999  9999999999998776778999999998766   247999999


Q ss_pred             EEEEEEcCCCCc-eeeecc-----cceeeccC----cCCccccceecccccCCCCCCeeECCEEEEEEEEEEEccc
Q 021574          242 YTLRILDQLGAK-HKSLQA-----AKDWFQSP----NLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTS  307 (310)
Q Consensus       242 ~~~~l~n~~~~~-~~~~~~-----~~~~F~~~----~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~  307 (310)
                      |+|.|+||.+.+ +.. ..     ..+.|...    +.+|||++||++++|++  +|||+||+|+|+|+|.|....
T Consensus       118 ~~l~lldq~~~~~~~~-~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~~~  190 (192)
T 2gkw_A          118 VTLMLMDQGSSRRHLG-DAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  190 (192)
T ss_dssp             EEEEECCCSTTCCCEE-EEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTTSS
T ss_pred             EEEEEECCCCCccceE-EEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCCCC
Confidence            999999998864 222 11     12457542    46899999999999987  589999999999999876543

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.92  E-value=6.8e-26  Score=190.65  Aligned_cols=134  Identities=22%  Similarity=0.368  Sum_probs=110.1

Q ss_pred             ccCcEEEEEEcceeccCC-------ceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEE
Q 021574          173 TYSSKYVWKVENFSKLDT-------RYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~-------~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      ...+.|+|+|.|||.++.       ..++|++|++|  |++|+|++||+|++.+.++|||+||++.+++   ...|++.|
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            367899999999999862       27999999999  9999999999998776778999999998766   24799999


Q ss_pred             EEEEEEEcCCCCc-eeeec----ccceeecc----CcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccC
Q 021574          241 EYTLRILDQLGAK-HKSLQ----AAKDWFQS----PNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSE  308 (310)
Q Consensus       241 ~~~~~l~n~~~~~-~~~~~----~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~  308 (310)
                      +|+|.|+||.+.+ +....    ...+.|..    .+.+|||++||++++|++  +|||+||+|+|+|+|.|.+...
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~  227 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD  227 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSCC
T ss_pred             EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccccC
Confidence            9999999998775 22200    11234642    346899999999999997  7999999999999999876543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.91  E-value=7.5e-25  Score=193.79  Aligned_cols=130  Identities=28%  Similarity=0.482  Sum_probs=108.4

Q ss_pred             cCcEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEE
Q 021574          174 YSSKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRIL  247 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~  247 (310)
                      ..++|+|+|.||+.++   ++.+.|++|.+||+   +|+|++||+|.+.++++|+|+||+|...+  .|++.|+|+|.|+
T Consensus         5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~--~~~v~a~~~~~l~   82 (312)
T 3hqi_A            5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP--KSEVRAKFKFSIL   82 (312)
T ss_dssp             EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC--C-CEEEEEEEEEE
T ss_pred             EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC--CCcEEEEEEEEEE
Confidence            3478999999999996   67899999999985   99999999998776778999999998754  7999999999999


Q ss_pred             cCCCCceeee-cccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcc
Q 021574          248 DQLGAKHKSL-QAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGT  306 (310)
Q Consensus       248 n~~~~~~~~~-~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~  306 (310)
                      ||+++..... ....+.|.. ..+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           83 NAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             CTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             eCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9998764431 245678874 468999999999999987789999999999999999953

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=3.7e-24  Score=201.98  Aligned_cols=136  Identities=21%  Similarity=0.332  Sum_probs=112.9

Q ss_pred             ccCcEEEEEEcceeccCCceeecceEEeCCceEEEEEEeCCCCCC-CCCeEEEEEEeCCCC-CCCceEEEEEEEEEEcCC
Q 021574          173 TYSSKYVWKVENFSKLDTRYEESQVFGAGNHKWKIVLYPRGNGCG-DGDHLSLYLALGDST-VDGIKVYAEYTLRILDQL  250 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~~~~~~S~~f~~gg~~w~i~~yp~g~~~~-~~~~ls~yL~~~~~~-~~~w~~~~~~~~~l~n~~  250 (310)
                      ...+.|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ +++|||+||.|.... ...|.+.|+|+|.|+|+.
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~  106 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR  106 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence            456889999999999985 89999999999999999999997543 568999999998765 568999999999999998


Q ss_pred             CCceeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574          251 GAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP  309 (310)
Q Consensus       251 ~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~  309 (310)
                      ++.....+...++|.....+|||.+||++++|.++++|||+||+++|+|.|+|...+|.
T Consensus       107 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~  165 (522)
T 2f1z_A          107 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  165 (522)
T ss_dssp             CGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred             CCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence            76533225667888877788999999999999877789999999999999999766653

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=6.2e-24  Score=200.46  Aligned_cols=137  Identities=18%  Similarity=0.292  Sum_probs=112.5

Q ss_pred             cccCCceEEEEEccccccccccccceEEeccEEeCCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEEE
Q 021574           16 SHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVFR   95 (310)
Q Consensus        16 ~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f~   95 (310)
                      .....++|+|+|+|||.+++     .++|++|.+||++|+|.+||+|+...++.+|||+||.|.+.. .+..|.+.|+|+
T Consensus        26 ~~~~~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~w~v~a~f~   99 (522)
T 2f1z_A           26 SWRSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTSWSCHAQAV   99 (522)
T ss_dssp             CCCSEEEEEEEESSCTTCCS-----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTC-CCSSCBEEEEEE
T ss_pred             cccCCcEEEEEECChhhcCC-----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCC-CCCCceEEEEEE
Confidence            34568999999999999965     789999999999999999999975223678999999998773 477899999999


Q ss_pred             EEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574           96 LFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus        96 ~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~  159 (310)
                      |.|+|+.++..... ....+.|.....+|||.+||++++|.+++++||.||+++|+|+|.| .+.
T Consensus       100 l~l~n~~~~~~~~~-~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          100 LKIINYRDDEKSFS-RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             EEECCTTCGGGCEE-EECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             EEEEcCCCCcccee-ccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            99999998765433 2356788877789999999999999877899999999999999999 543

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.56  E-value=1.2e-14  Score=136.36  Aligned_cols=131  Identities=20%  Similarity=0.263  Sum_probs=105.8

Q ss_pred             ccccCCceEEEEEccccccccccccceEEeccEEe-CCeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE-
Q 021574           15 TSHVSPAHYVVKIKSFSFLAEKAVEVKYESAAFEA-GGYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY-   91 (310)
Q Consensus        15 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~-~G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~-   91 (310)
                      +.+..+..+.|+|.||+++...++. .++||+|.. .||+++|.++|++      ..|+|+|++|++++.+ .+.||+. 
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~~~~~-~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~  472 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIGSPNG-TLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW  472 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTTCTTC-EEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             EeeCCCCCCceeecCHHHhhcCCCC-ceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence            3677889999999999999876555 899999974 8999999999875      3689999999999887 8899994 


Q ss_pred             EEEEEEEEecCCCceeEEecceeee---------------------------ecC-----CccccccceeeeccccccCC
Q 021574           92 AVFRLFLLDQNQDNYLVVQNAKERR---------------------------FNG-----LKLEWGFDQFISHKAFKEAS  139 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~~~~~~~~~~~---------------------------F~~-----~~~~~G~~~fi~~~~l~~~~  139 (310)
                      -+++|+|++|++.....+  .....                           |..     .+.+|||+.||+++.|.  +
T Consensus       473 ~q~t~~llDQ~pd~~~rm--s~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~  548 (592)
T 4gwm_A          473 QQATMTLLDQNPDIRQRM--SNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--S  548 (592)
T ss_dssp             EEEEEEECCCCSSGGGCC--CEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--S
T ss_pred             CEEEEEEeCCCCChHhcC--ceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--h
Confidence            789999999987643222  01111                           111     13468999999999999  6


Q ss_pred             CCeEEcCeEEEEEEEEE
Q 021574          140 NGYLVEDTCVFGAEVFV  156 (310)
Q Consensus       140 ~~yl~~d~l~i~~~v~v  156 (310)
                      ..||+||.|+|.++|.-
T Consensus       549 r~fiK~d~~~i~~~~eD  565 (592)
T 4gwm_A          549 RDFIKGDDVYILLTVED  565 (592)
T ss_dssp             TTSSBTTBEEEEEEEEE
T ss_pred             cCcccCCeEEEEEEEEe
Confidence            78999999999999965

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.50  E-value=1.2e-12  Score=122.87  Aligned_cols=124  Identities=17%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             ccCcEEEEEEcceeccC---CceeecceEEe-CCceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceE-EEEEEE
Q 021574          173 TYSSKYVWKVENFSKLD---TRYEESQVFGA-GNHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKV-YAEYTL  244 (310)
Q Consensus       173 ~~~~~~~~~i~~fs~~~---~~~~~S~~f~~-gg~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~-~~~~~~  244 (310)
                      -++..+.|+|.||+++.   +..++||.|+. .||.++|.+||++     ..++|+|++|++++   ...||+ .-+++|
T Consensus       403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~  477 (592)
T 4gwm_A          403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM  477 (592)
T ss_dssp             SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred             CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence            34557999999999987   46899999987 6999999999976     35999999999988   468999 578999


Q ss_pred             EEEcCCCCceeeeccccee---------------ec------------c-----CcCCccccceecccccCCCCCCeeEC
Q 021574          245 RILDQLGAKHKSLQAAKDW---------------FQ------------S-----PNLTWGWTRFISFSELNKPGTGFLVN  292 (310)
Q Consensus       245 ~l~n~~~~~~~~~~~~~~~---------------F~------------~-----~~~~~G~~~fi~~~~L~~~~~g~l~d  292 (310)
                      .|++|++..... +.....               |.            .     ++.+|||+.||+++.|..  +.||+|
T Consensus       478 ~llDQ~pd~~~r-ms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~  554 (592)
T 4gwm_A          478 TLLDQNPDIRQR-MSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG  554 (592)
T ss_dssp             EECCCCSSGGGC-CCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred             EEeCCCCChHhc-CceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence            999997654211 111111               11            1     124689999999999996  569999


Q ss_pred             CEEEEEEEEEEE
Q 021574          293 DVCVVEAEVTVL  304 (310)
Q Consensus       293 D~l~i~~~V~v~  304 (310)
                      |.|+|.+.|+-+
T Consensus       555 d~~~i~~~~eD~  566 (592)
T 4gwm_A          555 DDVYILLTVEDI  566 (592)
T ss_dssp             TBEEEEEEEEEC
T ss_pred             CeEEEEEEEEeC
Confidence            999999999755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-27
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	7e-20
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-24
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	1e-17
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	7e-24
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	2e-17
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	6e-19
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-18

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 177 KYVWKVENFSKLDTRYEE---SQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGD 230
            Y+W + NFS       E   S  F +G +   KW + + P+G      D+LSLYL L  
Sbjct: 6   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 231 STVDGIKVYAEYTLRILDQLGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFL 290
                 +V A++   IL+  G + K++++ + +       WG+ +FI    L     G L
Sbjct: 66  CPKS--EVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL 123

Query: 291 VNDVCVVEAEVTVLGTS 307
            +D   +  EV+V+  S
Sbjct: 124 PDDKLTLFCEVSVVQDS 140

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 7e-20
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 23  YVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAMA 79
           Y+  I +FSF  E+  E   +S+ F +G     KW L + P G + ++ KD++SLYL + 
Sbjct: 7   YMWTINNFSFCREEMGE-VIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLV 64

Query: 80  DTNSLNFGLEVYAVFRLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEAS 139
                    EV A F+  +L+   +    +++ +  RF     +WGF +FI      + +
Sbjct: 65  S----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEA 119

Query: 140 NGYLVEDTCVFGAEVFVKERNI 161
           NG L +D      EV V + ++
Sbjct: 120 NGLLPDDKLTLFCEVSVVQDSV 141

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 2e-24
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 21/152 (13%)

Query: 174 YSSKYVWKVENFSKLDTRYEE-------SQVFGAGN--HKWKIVLYPRGNGCGDGDHLSL 224
           Y   ++WK+ +F +              S  F      +K  + +Y  G+G G G HLSL
Sbjct: 1   YDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSL 60

Query: 225 YLALGDSTVDGI---KVYAEYTLRILDQLGAKHKSLQAAKD----WFQSPN----LTWGW 273
           +  +     D +       + TL +LDQ   +H       D     FQ P     +  G 
Sbjct: 61  FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 120

Query: 274 TRFISFSELNKPGTGFLVNDVCVVEAEVTVLG 305
             F   S++      ++ +D   ++A V + G
Sbjct: 121 PLFCPVSKMEAKN-SYVRDDAIFIKAIVDLTG 151

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 1e-17
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 22  HYVVKIKSFSFLAEKAVEVKYE---SAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
            ++ KI  F    ++AV  +     S AF     GYK  L +Y NG+ +     H+SL+ 
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR-GTHLSLFF 62

Query: 77  AMADTNSLNFGLE-VYAVFRLFLLDQNQDNYLV-------VQNAKERRFNGLKLEWGFDQ 128
            +    +             L LLDQN   +++         ++ +R  N + +  G   
Sbjct: 63  VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122

Query: 129 FISHKAFKEASNGYLVEDTCVFGAEV 154
           F       EA N Y+ +D     A V
Sbjct: 123 FCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 7e-24
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 174 YSSKYVWKVENFSKL-------DTRYEESQVFGAGN--HKWKIVLYPRGNGCGDGDHLSL 224
           Y+   +WK+ ++ +         T    SQ F  G   +K    +Y  G+G G G HLSL
Sbjct: 1   YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSL 60

Query: 225 YLALGDSTVDGI---KVYAEYTLRILDQLGAKH---------KSLQAAKDWFQSPNLTWG 272
           +  +     D +       + TL ++DQ  ++           +  + K      N+  G
Sbjct: 61  FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 120

Query: 273 WTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP 309
              F++ + L      ++ +D   ++  V      +P
Sbjct: 121 CPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 155

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 2e-17
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 22  HYVVKIKSFSFLAEKAVE---VKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
             + KI+ +    ++AV    +   S  F  G  GYK    +Y NG+       H+SL+ 
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGD-GMGKGTHLSLFF 62

Query: 77  AMAD-TNSLNFGLEVYAVFRLFLLDQNQDNYLVV--------QNAKERRFNGLKLEWGFD 127
            +                  L L+DQ      +          ++ ++    + +  G  
Sbjct: 63  VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122

Query: 128 QFISHKAFKEASNGYLVEDTCVFGAEV 154
            F++    +  +  Y+ +DT      V
Sbjct: 123 VFVAQTVLE--NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 6e-19
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 22  HYVVKIKSFSFLAEKAVEVK---YESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYL 76
            Y+ KI +F    +   E K     S  F  G  GYK  + L+     ++   ++ISL++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 77  AMADT-NSLNFGLEVYAVFRLFLLDQNQD-----------NYLVVQNAKERRFNGLKLEW 124
                    +         RL +LDQ++                +   +          +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 125 GFDQFISHKAFKEASNGYLVEDTCVFGAEV 154
           G+  F+  +A +     ++ +DT +   EV
Sbjct: 126 GYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 3e-18
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 27/151 (17%)

Query: 177 KYVWKVENFSKL-------DTRYEESQVFGAGN--HKWKIVLYPRGNG-CGDGDHLSLYL 226
            Y+WK+ NF                S  F  G   +K  + L+ +        +++SL++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 227 ALGDSTVD---GIKVYAEYTLRILDQLGAKHK------------SLQAAKDWFQSPNLTW 271
                  D            L ILDQ  A  +             L   +         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 272 GWTRFISFSELNKPGTGFLVNDVCVVEAEVT 302
           G+  F+    L +    F+ +D  +V  EV+
Sbjct: 126 GYVTFMHLEALRQR--TFIKDDTLLVRCEVS 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.95
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.94
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.94
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.94
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.93
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.91

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=193.50  Aligned_cols=135  Identities=24%  Similarity=0.329  Sum_probs=110.2

Q ss_pred             CceEEEEEccccccccc---cccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEE
Q 021574           20 PAHYVVKIKSFSFLAEK---AVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAV   93 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~   93 (310)
                      .|+|+|+|+|||.+++.   +.+..++||+|.++  ||+|+|.+||+|+. +++.+|+||||++.++..+ +..|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccccceeeE
Confidence            58999999999999653   23337999999988  99999999999987 5678999999999988765 668999999


Q ss_pred             EEEEEEecCCCceeEEe---cce----eeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           94 FRLFLLDQNQDNYLVVQ---NAK----ERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        94 f~~~l~n~~~~~~~~~~---~~~----~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      |+|+|+||.+.......   ...    .+.+...+.+|||.+||++++|. +++|||.||+|+|+|+|.|
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v  149 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDL  149 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECC
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEe
Confidence            99999999887654321   111    12233446789999999999985 4579999999999999976

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8e-28  Score=187.44  Aligned_cols=130  Identities=28%  Similarity=0.495  Sum_probs=112.4

Q ss_pred             cEEEEEEcceeccC---CceeecceEEeCCc---eEEEEEEeCCCCCCCCCeEEEEEEeCCCCCCCceEEEEEEEEEEcC
Q 021574          176 SKYVWKVENFSKLD---TRYEESQVFGAGNH---KWKIVLYPRGNGCGDGDHLSLYLALGDSTVDGIKVYAEYTLRILDQ  249 (310)
Q Consensus       176 ~~~~~~i~~fs~~~---~~~~~S~~f~~gg~---~w~i~~yp~g~~~~~~~~ls~yL~~~~~~~~~w~~~~~~~~~l~n~  249 (310)
                      .+|+|+|.||+.++   ++.++||.|.+||+   +|+|.+||+|...+.++||||||.+..+.  .|++.++|+|.|+||
T Consensus         5 ~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~--~~~v~~~~~~~l~n~   82 (146)
T d2cr2a1           5 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP--KSEVRAKFKFSILNA   82 (146)
T ss_dssp             EEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCS--SSEEEEECEEEEECT
T ss_pred             EEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCC--CceEEEEEEEEEEcC
Confidence            56999999999887   46799999999874   89999999999888788999999998865  799999999999999


Q ss_pred             CCCceeeecccceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEccc
Q 021574          250 LGAKHKSLQAAKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTS  307 (310)
Q Consensus       250 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~  307 (310)
                      ++++..........+...+.+|||++||++++|.++.+|||+||+|+|+|+|+|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          83 KGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             TSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             CCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            8876544334444454567889999999999999988999999999999999999765

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-28  Score=188.71  Aligned_cols=135  Identities=30%  Similarity=0.523  Sum_probs=114.0

Q ss_pred             cCCceEEEEEccccccccccccceEEeccEEeCC---eEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCCCCCcEEEEEE
Q 021574           18 VSPAHYVVKIKSFSFLAEKAVEVKYESAAFEAGG---YKWKLVLYPNGNESKNVKDHISLYLAMADTNSLNFGLEVYAVF   94 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~~G---~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~f   94 (310)
                      +...+|+|+|+||+.+++..++ .++||.|.++|   ++|+|.+||+|.. ++..+||||||.+.++.    .|++.++|
T Consensus         2 v~~~~~~W~I~nfs~~~~~~~~-~~~Sp~F~~~~~~~~~W~l~lyp~G~~-~~~~~~lSv~L~~~~~~----~~~v~~~~   75 (146)
T d2cr2a1           2 VVKFSYMWTINNFSFCREEMGE-VIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF   75 (146)
T ss_dssp             EEEEEEEEEEETGGGCCCCSSC-CEECCCBCSSSCCSCCBEEEECTTCSS-SSSSSBCCEEEECCCCS----SSEEEEEC
T ss_pred             eeEEEEEEEECCchHHhhcCCC-EEECCCEEeCCcCCeEEEEEEEECCCC-CCCCCEEEEEEEeccCC----CceEEEEE
Confidence            3467899999999998765444 89999999887   4899999999987 67788999999998765    49999999


Q ss_pred             EEEEEecCCCceeEEecceeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE-Eee
Q 021574           95 RLFLLDQNQDNYLVVQNAKERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV-KER  159 (310)
Q Consensus        95 ~~~l~n~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v-~~~  159 (310)
                      +|.|+|+.++..........+.|. .+.+|||.+||++++|.++.++||.||+|+|+|+|+| ++.
T Consensus        76 ~~~l~n~~~~~~~~~~~~~~~~~~-~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          76 KFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             EEEEECTTSCEEEEEECSCCEEEE-TTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EEEEEcCCCCcccceEecceEeCC-CCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999999998876655443444444 4688999999999999998999999999999999999 544

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=188.31  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=110.7

Q ss_pred             cCCceEEEEEccccccccc---cccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEE
Q 021574           18 VSPAHYVVKIKSFSFLAEK---AVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVY   91 (310)
Q Consensus        18 ~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~   91 (310)
                      ...|+|+|+|+||+++++.   +.+..++||+|.+|  ||+|+|.+||+|...+...+|+|+||.+.++..+ ...|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            4679999999999999653   23347999999998  9999999999998734457899999999988765 6789999


Q ss_pred             EEEEEEEEecCCCceeEEec------c-----eeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEE
Q 021574           92 AVFRLFLLDQNQDNYLVVQN------A-----KERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVF  155 (310)
Q Consensus        92 ~~f~~~l~n~~~~~~~~~~~------~-----~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~  155 (310)
                      ++++|.|+||++........      .     ..+.+.....+|||.+||++++|+  ++|||.||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            99999999998875432100      0     112344456789999999999998  68999999999999985

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-28  Score=190.71  Aligned_cols=134  Identities=18%  Similarity=0.272  Sum_probs=110.8

Q ss_pred             CceEEEEEccccccccc---cccceEEeccEEeC--CeEEEEEEeeCCCcCCCCCCeEEEEEEEecCCCC-CCCcEEEEE
Q 021574           20 PAHYVVKIKSFSFLAEK---AVEVKYESAAFEAG--GYKWKLVLYPNGNESKNVKDHISLYLAMADTNSL-NFGLEVYAV   93 (310)
Q Consensus        20 ~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~~~--G~~W~l~~~p~g~~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~   93 (310)
                      +|+|+|+|.|||.+++.   +.+..++||+|.++  ||+|+|.+||+|++ ++..+|+||||.+.+++.+ ...|+++++
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~-~~~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQK   80 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTTTTSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEccCCcCcccCCcEEEE
Confidence            68999999999998653   23338999999988  99999999999987 5678999999999988765 678999999


Q ss_pred             EEEEEEecCCCceeEEec----c----eeeeecCCccccccceeeeccccccCCCCeEEcCeEEEEEEEEE
Q 021574           94 FRLFLLDQNQDNYLVVQN----A----KERRFNGLKLEWGFDQFISHKAFKEASNGYLVEDTCVFGAEVFV  156 (310)
Q Consensus        94 f~~~l~n~~~~~~~~~~~----~----~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v  156 (310)
                      |+|.|+||.+........    .    ..+.+...+.+|||.+||++++|+  ++|||.||+|+|+|+|.+
T Consensus        81 ~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1          81 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             EEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            999999999876543211    1    122334456789999999999998  689999999999999866

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=185.93  Aligned_cols=129  Identities=22%  Similarity=0.351  Sum_probs=105.8

Q ss_pred             CcEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEE
Q 021574          175 SSKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEY  242 (310)
Q Consensus       175 ~~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~  242 (310)
                      +|+|+|+|.||+.++       +..++|+.|++|  |++|+|++||+|+..++++|+||||++..++   ...|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            478999999999885       346899999998  9999999999999877778999999998876   3589999999


Q ss_pred             EEEEEcCCCCceeee---cc-ccee----eccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEE
Q 021574          243 TLRILDQLGAKHKSL---QA-AKDW----FQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVL  304 (310)
Q Consensus       243 ~~~l~n~~~~~~~~~---~~-~~~~----F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~  304 (310)
                      +|.|+||.++++...   .. ....    +...+.+|||++||++++|+. ++|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~-~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCC-STTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcc-cCCcEeCCEEEEEEEEEec
Confidence            999999987764321   11 1122    333457899999999999964 5799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-27  Score=184.35  Aligned_cols=133  Identities=23%  Similarity=0.336  Sum_probs=108.2

Q ss_pred             CcEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCCCCeEEEEEEeCCCC---CCCceEEEEE
Q 021574          175 SSKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGDGDHLSLYLALGDST---VDGIKVYAEY  242 (310)
Q Consensus       175 ~~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~~~~ls~yL~~~~~~---~~~w~~~~~~  242 (310)
                      .|+|+|+|.||+.+.       +..++|+.|+++  |++|+|++||+|++.+.++|+||||++.+++   ...|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            578999999999874       347999999998  8999999999999877778999999998876   3579999999


Q ss_pred             EEEEEcCCCCceeeecc---------cceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEEEEcccCC
Q 021574          243 TLRILDQLGAKHKSLQA---------AKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVTVLGTSEP  309 (310)
Q Consensus       243 ~~~l~n~~~~~~~~~~~---------~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~v~~~~~~  309 (310)
                      +|.|+||.+........         ..+.+...+.+|||++||++++|++  +|||+||+|+|+|+|.+.....|
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~~~~p  155 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPDP  155 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSSSCCC
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCCCCCc
Confidence            99999998765321111         1222334456899999999999985  79999999999999976554443

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-25  Score=174.00  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=103.5

Q ss_pred             cCcEEEEEEcceeccC-------CceeecceEEeC--CceEEEEEEeCCCCCCC-CCeEEEEEEeCCCC---CCCceEEE
Q 021574          174 YSSKYVWKVENFSKLD-------TRYEESQVFGAG--NHKWKIVLYPRGNGCGD-GDHLSLYLALGDST---VDGIKVYA  240 (310)
Q Consensus       174 ~~~~~~~~i~~fs~~~-------~~~~~S~~f~~g--g~~w~i~~yp~g~~~~~-~~~ls~yL~~~~~~---~~~w~~~~  240 (310)
                      ..|+|+|+|.||+.++       +..++||.|++|  |++|+|.+||+|...+. ++|+|+||++..++   ..+|++.+
T Consensus         3 ~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~   82 (155)
T d1lb6a_           3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (155)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEE
Confidence            4689999999999985       347999999998  99999999999987653 57999999998876   35899999


Q ss_pred             EEEEEEEcCCCCceeee--cc----------cceeeccCcCCccccceecccccCCCCCCeeECCEEEEEEEEE
Q 021574          241 EYTLRILDQLGAKHKSL--QA----------AKDWFQSPNLTWGWTRFISFSELNKPGTGFLVNDVCVVEAEVT  302 (310)
Q Consensus       241 ~~~~~l~n~~~~~~~~~--~~----------~~~~F~~~~~~~G~~~fi~~~~L~~~~~g~l~dD~l~i~~~V~  302 (310)
                      .++|.|+||++......  ..          ..+.+.....+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            99999999987642110  00          1123344456899999999999985  7999999999999986