Citrus Sinensis ID: 021587

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQMINDSPSPRNNDHNSLKASQEKNELPGSFSCMCFKL
cccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHccccEEEEcccccccHHHHcccccccccHHHHHHHccccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccc
ccEccccccccccccccccccccccEEEEcccccccHHHccccccccEccccccccHHccccccccccHHHHHHHHcccccccccccccccccccccEEEcccccccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccccccHHHHHHccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccccEEEEcc
msvststtegnqassgddkypipltsyintissssstssrsgstssiMSEIEeeeeeeenynssrsnsSQLLSeindgngmpmplapikeeiessffsfdvangngtqeeDIIYVAVGKSQSSMDALSWTLrhavnpstLIFLIHVfpqvkfvpsplgklprnqvnpeQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHIlqtapetceikvVCEGKEVIDQMindspsprnndhnslkasqeknelpgsfscmcfkl
msvststtegnqassgddkypiPLTSYIntissssstssrsgstsSIMSEIEEEEEeeenynssrsnsSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILdlipvlnirklvvgttksslrvlrksksgrisgmadhilqtapetcEIKVVCEGKEVIDQMindspsprnnDHNSLkasqeknelpgsfsCMCFKL
MSVSTSTTEGNQASSGDDKYPIPLtsyintissssstssrsgstssimseieeeeeeeenynssrsnssQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTksslrvlrksksGRISGMADHILQTAPETCEIKVVCEGKEVIDQMINDSPSPRNNDHNSLKASQEKNELPGSFSCMCFKL
**********************************************************************************************SFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL*************************QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLR******ISGMADHILQTAPETCEIKVVCEGKEVID*************************************
*******************YPIPLTSYINT**********************************************************************************IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQV*PEQ***FMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRV*********SGMADHILQTAPETCEIKVVCEGKE*********************************SCMCFKL
***************GDDKYPIPLTSYINTI***************************************LLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQMINDSPSPRNNDHNSLKASQEKNELPGSFSCMCFKL
*****************DKYPIPLTSYINTI**************************************QLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQMIN************************SFSCMCF*L
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKEVIDQMINDSPSPRNNDHNSLKASQEKNELPGSFSCMCFKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
Q8GUH1 834 U-box domain-containing p no no 0.538 0.200 0.292 5e-11
Q683D5 400 U-box domain-containing p no no 0.432 0.335 0.276 1e-08
Q9FGD7 765 Putative U-box domain-con no no 0.464 0.188 0.259 1e-07
Q9SW11 835 U-box domain-containing p no no 0.483 0.179 0.245 2e-07
Q8GZ84 435 U-box domain-containing p no no 0.490 0.349 0.287 6e-07
P0C6E7 568 Putative U-box domain-con no no 0.464 0.253 0.290 2e-06
Q9LQ92 308 U-box domain-containing p no no 0.480 0.483 0.280 3e-05
Q8GXQ7 365 U-box domain-containing p no no 0.306 0.260 0.292 0.0005
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2 Back     alignment and function desciption
 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 113 IYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
           I+VAV K  + S   L W L++       I LIHV    + +P    K P   V  E++ 
Sbjct: 47  IFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEEEVR 104

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231
            F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G   
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAAA 164

Query: 232 SSLRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG------KEVIDQMINDSPSPR 283
              R   +  +   S  A  + + AP  C+I   C+G      +  +D   ++  SPR
Sbjct: 165 D--RHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYASPR 220
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1 Back     alignment and function description
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function description
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2 Back     alignment and function description
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1 Back     alignment and function description
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
224089553289 predicted protein [Populus trichocarpa] 0.764 0.820 0.532 4e-69
225467979275 PREDICTED: U-box domain-containing prote 0.729 0.821 0.562 3e-65
296083524223 unnamed protein product [Vitis vinifera] 0.7 0.973 0.577 4e-65
255579152264 ATP binding protein, putative [Ricinus c 0.677 0.795 0.580 3e-62
388491918254 unknown [Lotus japonicus] 0.6 0.732 0.575 1e-59
356522087295 PREDICTED: U-box domain-containing prote 0.729 0.766 0.527 6e-57
351728033246 uncharacterized protein LOC100527773 [Gl 0.625 0.788 0.547 5e-56
356555775246 PREDICTED: U-box domain-containing prote 0.532 0.670 0.588 1e-55
356532376 449 PREDICTED: uncharacterized protein LOC10 0.516 0.356 0.606 4e-54
449434410279 PREDICTED: uncharacterized protein LOC10 0.629 0.698 0.523 8e-54
>gi|224089553|ref|XP_002308753.1| predicted protein [Populus trichocarpa] gi|222854729|gb|EEE92276.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 138/259 (53%), Positives = 188/259 (72%), Gaps = 22/259 (8%)

Query: 55  EEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIY 114
           E EEE Y+S        L EIN G    +PL  IKE+IE S FSFDV    G  ++D +Y
Sbjct: 44  EIEEEKYSSD-------LFEINHG----VPLESIKEDIEGSVFSFDVY---GEHQKDCVY 89

Query: 115 VAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETF 173
           V VGKS+SSMDALSWTL++A+ + +T++FLIH+FP++ ++PSPLG+LP++QV+ +Q+E +
Sbjct: 90  VGVGKSESSMDALSWTLKNAIIDSNTMVFLIHIFPEIHYIPSPLGRLPKSQVSAQQVENY 149

Query: 174 MAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSS 233
           MAQE  KRR+LLQKF++ CS SKV VDT+L+ESD V KA++DLI V+N+RKL++GT+KS+
Sbjct: 150 MAQERDKRRELLQKFINMCSASKVKVDTILVESDAVGKAMMDLITVVNMRKLILGTSKSN 209

Query: 234 LRVLRKSKSGRISGMADHILQTAPETCEIKVVCEGKE-VIDQMINDSPS--PRNNDHNSL 290
           LR LR   S R +G+AD ++Q APE C++K++C+GKE VIDQM+  SP   P N    S 
Sbjct: 210 LRKLR---SKRGNGIADQVIQNAPEFCDVKIICDGKEVVIDQMVG-SPITLPDNPSEKSF 265

Query: 291 KASQEKNELPGSFSCMCFK 309
               E N    SF+CMCFK
Sbjct: 266 TLQDESNTNNDSFACMCFK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225467979|ref|XP_002269050.1| PREDICTED: U-box domain-containing protein 33 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083524|emb|CBI23514.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579152|ref|XP_002530423.1| ATP binding protein, putative [Ricinus communis] gi|223530031|gb|EEF31954.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388491918|gb|AFK34025.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356522087|ref|XP_003529681.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max] Back     alignment and taxonomy information
>gi|351728033|ref|NP_001237181.1| uncharacterized protein LOC100527773 [Glycine max] gi|255633178|gb|ACU16945.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356555775|ref|XP_003546205.1| PREDICTED: U-box domain-containing protein 35-like [Glycine max] Back     alignment and taxonomy information
>gi|356532376|ref|XP_003534749.1| PREDICTED: uncharacterized protein LOC100777008 [Glycine max] Back     alignment and taxonomy information
>gi|449434410|ref|XP_004134989.1| PREDICTED: uncharacterized protein LOC101213489 [Cucumis sativus] gi|449520169|ref|XP_004167106.1| PREDICTED: uncharacterized LOC101213489 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2050669 834 AT2G45910 [Arabidopsis thalian 0.580 0.215 0.278 1.3e-09
TAIR|locus:504954932 789 AT5G57035 [Arabidopsis thalian 0.509 0.200 0.294 6.6e-09
TAIR|locus:2082802294 AT3G61410 "AT3G61410" [Arabido 0.506 0.534 0.254 6.8e-08
TAIR|locus:2050659 400 AT2G45920 [Arabidopsis thalian 0.293 0.227 0.322 1.1e-06
TAIR|locus:2117343 835 AT4G25160 [Arabidopsis thalian 0.483 0.179 0.238 1.3e-06
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.512 0.201 0.241 3.5e-06
TAIR|locus:2098816 435 AT3G61390 [Arabidopsis thalian 0.538 0.383 0.267 5.8e-06
TAIR|locus:2198190 308 PUB54 "plant U-box 54" [Arabid 0.480 0.483 0.280 6.4e-06
TAIR|locus:2128131 764 AT4G31230 [Arabidopsis thalian 0.5 0.202 0.243 7.5e-06
TAIR|locus:2198165 568 AT1G01660 [Arabidopsis thalian 0.564 0.308 0.278 1.9e-05
TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 52/187 (27%), Positives = 82/187 (43%)

Query:   110 EDIIYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
             ++ I+VAV K  + S   L W L++       I LIHV    + +P    K P   V  E
Sbjct:    44 DEKIFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query:   169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
             ++  F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G
Sbjct:   102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161

Query:   229 TTXXXXXXXXXXXXGRISGMADHILQTAPETCEIKVVCEGKEVI--DQMINDSPSPRNND 286
                              S  A  + + AP  C+I   C+G  +   +  ++D+ S   + 
Sbjct:   162 AAADRHYSRRMTDLK--SRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYASP 219

Query:   287 HNSLKAS 293
               S+ AS
Sbjct:   220 RPSISAS 226
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
TAIR|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082802 AT3G61410 "AT3G61410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050659 AT2G45920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198190 PUB54 "plant U-box 54" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198165 AT1G01660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 2e-29
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 5e-12
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-04
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score =  109 bits (274), Expect = 2e-29
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
            + VAV K + S +AL W L +       I L+HV P +  +PS  GKL       ++ +
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEED 60

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231
                   + ++LL  +   CS+  V  + V++E D VAKAI++ +    I KLV+G + 
Sbjct: 61  K-------EAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS 113

Query: 232 SS--LRVLRKSKSGRISGMADHILQTAPETCEIKVVCEG 268
            +      +KS       +A  +L+ AP+ C + VV +G
Sbjct: 114 DNHFSMKFKKSD------VASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.95
PRK15456142 universal stress protein UspG; Provisional 99.93
PRK15005144 universal stress protein F; Provisional 99.92
PRK09982142 universal stress protein UspD; Provisional 99.9
PRK15118144 universal stress global response regulator UspA; P 99.89
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.87
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.87
PRK10116142 universal stress protein UspC; Provisional 99.86
cd01987124 USP_OKCHK USP domain is located between the N-term 99.86
PRK11175 305 universal stress protein UspE; Provisional 99.84
COG0589154 UspA Universal stress protein UspA and related nuc 99.78
PRK11175305 universal stress protein UspE; Provisional 99.78
cd00293130 USP_Like Usp: Universal stress protein family. The 99.76
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.53
PRK10490 895 sensor protein KdpD; Provisional 99.24
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.05
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.31
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.82
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.63
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 95.98
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 95.95
PLN03159832 cation/H(+) antiporter 15; Provisional 94.77
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 94.13
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 91.86
PRK12342254 hypothetical protein; Provisional 89.98
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 89.78
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 89.68
PRK03359256 putative electron transfer flavoprotein FixA; Revi 87.47
COG2086260 FixA Electron transfer flavoprotein, beta subunit 87.26
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 85.65
PRK13820 394 argininosuccinate synthase; Provisional 83.87
cd01712177 ThiI ThiI is required for thiazole synthesis in th 82.87
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 80.92
PLN00200 404 argininosuccinate synthase; Provisional 80.26
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.95  E-value=1.5e-27  Score=200.09  Aligned_cols=145  Identities=31%  Similarity=0.516  Sum_probs=121.0

Q ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 021587          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (310)
Q Consensus       112 kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~~~~  191 (310)
                      +||||+|+|+.|++||+||+++|...+++|++|||+++........+       .......+.++.++.++++|+++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999989999999999976432111111       01223445566677888999999999


Q ss_pred             hhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCC-cHHHHHHhhCCCCceEEEEcCC
Q 021587          192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRIS-GMADHILQTAPETCEIKVVCEG  268 (310)
Q Consensus       192 ~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llG-SVA~~Vl~~Ap~~CpVlVV~~~  268 (310)
                      |...++.++..++.|++|+++|+++|+++++||||||+||++.  +.++   ++| ||+.+|+++++++|||+||++|
T Consensus        74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~--l~~~---~~gssva~~Vi~~a~~~c~Vlvv~~~  146 (146)
T cd01989          74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNH--FSMK---FKKSDVASSVLKEAPDFCTVYVVSKG  146 (146)
T ss_pred             HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCc--eeec---ccCCchhHHHHhcCCCCceEEEEeCc
Confidence            8888999999998887789999999999999999999999987  6776   455 7999999999999999999986

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 9e-07
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 1e-06
3olq_A 319 Universal stress protein E; structural genomics, P 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.9 bits (144), Expect = 4e-10
 Identities = 56/332 (16%), Positives = 102/332 (30%), Gaps = 94/332 (28%)

Query: 10  GNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSS 69
            N  S   +     L   +  I  + +  SRS  +S+I   I   + E      S+   +
Sbjct: 190 KNCNS--PETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 70  QL--LSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNG------TQEEDIIYVAVGKSQ 121
            L  L  + +            +       +F++           T+ + +       + 
Sbjct: 246 CLLVLLNVQN-----------AKAWN----AFNL----SCKILLTTRFKQVTDFLSAATT 286

Query: 122 S--SMDALSWTLRHAVNPSTL-IFLIHVFPQVKFVPSPLGKLPR--NQVNPEQLETFMAQ 176
           +  S+D  S TL          + L       K++      LPR     NP +L      
Sbjct: 287 THISLDHHSMTLTP---DEVKSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAE- 335

Query: 177 ETGKRRQLLQKFLDTCSQSK-VMVDTV--LIESDL------------VAKAILD---LIP 218
                   ++  L T    K V  D +  +IES L               ++      IP
Sbjct: 336 -------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 219 --VLNI----------RKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC 266
             +L++            +V    K SL V ++ K   IS      +       E+KV  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTIS---IPSIY-----LELKVKL 439

Query: 267 EGKEVI-DQMINDSPSPRNNDHNSLKASQEKN 297
           E +  +   +++    P+  D + L       
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.93
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.93
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.92
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.92
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.92
3fg9_A156 Protein of universal stress protein USPA family; A 99.91
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.91
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.91
3tnj_A150 Universal stress protein (USP); structural genomic 99.9
2z08_A137 Universal stress protein family; uncharacterized c 99.9
3dlo_A155 Universal stress protein; unknown function, struct 99.9
3fdx_A143 Putative filament protein / universal stress PROT; 99.89
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.86
3olq_A 319 Universal stress protein E; structural genomics, P 99.85
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.83
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.83
3loq_A294 Universal stress protein; structural genomics, PSI 99.83
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.82
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.82
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.8
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.8
3olq_A319 Universal stress protein E; structural genomics, P 99.79
3loq_A294 Universal stress protein; structural genomics, PSI 99.79
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.71
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.48
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 92.95
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 87.55
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 85.62
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.93  E-value=3e-25  Score=182.88  Aligned_cols=141  Identities=14%  Similarity=0.181  Sum_probs=120.0

Q ss_pred             CCCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 021587          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (310)
Q Consensus       109 ~~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~~g~ip~~~~~~e~~e~~~~~~~e~a~elL~~~  188 (310)
                      .+++||||+|+|+.+.+|++||+++|...+++|++|||+++......  .       .......+.++.++.+++.|+++
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~   74 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQR   74 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999988999999999987532110  0       00123445666778889999999


Q ss_pred             HHHhhcCCC-cEEEEEEEcCChHHHHHH-HhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEEEc
Q 021587          189 LDTCSQSKV-MVDTVLIESDLVAKAILD-LIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVVC  266 (310)
Q Consensus       189 ~~~~~~~gV-~ve~~vveG~~~aeaIve-~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlVV~  266 (310)
                      .+.+...|+ .++..+..|+ ++++|++ +|++.++||||||++|++.  +.++   ++||++.+|+++++  ||||||+
T Consensus        75 ~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~--~~~~---~~Gs~~~~vl~~~~--~pVlvV~  146 (146)
T 3s3t_A           75 QQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNS--PHRV---AVGSTTSYVVDHAP--CNVIVIR  146 (146)
T ss_dssp             HHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSC--TTTC---SSCHHHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCC--cceE---EEcchHHHHhccCC--CCEEEeC
Confidence            999988899 9998888885 6999999 9999999999999999977  6777   79999999999998  9999996
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 7e-08
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 7e-05
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 9e-05
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 17/162 (10%)

Query: 113 IYVAV---------GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRN 163
           + VAV           S S   A  WTL   V  +T  F I +             +   
Sbjct: 4   VMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI 63

Query: 164 QVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIR 223
             +PE           K   LL+ F++ C +  V  +   I++      I   +  +   
Sbjct: 64  YASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW-IKTGDPKDVICQEVKRVRPD 122

Query: 224 KLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKVV 265
            LVVG+     R L + +   +  ++   ++ A   C +  +
Sbjct: 123 FLVVGS-----RGLGRFQKVFVGTVSAFCVKHAE--CPVMTI 157
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.95
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.94
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.92
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.91
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.88
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.86
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 94.48
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 89.44
d3clsc1262 Small, beta subunit of electron transfer flavoprot 87.48
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 85.81
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 84.3
d1efpb_246 Small, beta subunit of electron transfer flavoprot 83.36
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=2.2e-27  Score=198.15  Aligned_cols=152  Identities=12%  Similarity=0.147  Sum_probs=122.6

Q ss_pred             CCEEEEeecCCHHHHHHHHHHHHHhcCCCCEEEEEEEecCCCcCCCC-----CCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 021587          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSP-----LGKLPRNQVNPEQLETFMAQETGKRRQL  184 (310)
Q Consensus       110 ~~kILVAVDgSe~S~~AL~wAl~lA~~~ga~L~LVHVi~~~~~ip~~-----~g~ip~~~~~~e~~e~~~~~~~e~a~el  184 (310)
                      |+|||||+|+|+.|++|++||+++|+..+++|+||||+++.......     .+.........+....+.++..+++++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999764321110     0000011111223344566677888999


Q ss_pred             HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhccCCCCEEEECCCCCCchhhhhcccCCCCcHHHHHHhhCCCCceEEE
Q 021587          185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRVLRKSKSGRISGMADHILQTAPETCEIKV  264 (310)
Q Consensus       185 L~~~~~~~~~~gV~ve~~vveG~~~aeaIve~A~e~~aDLIVMGSrG~g~~~l~r~~s~llGSVA~~Vl~~Ap~~CpVlV  264 (310)
                      |+++.+.+...|++++.++..|+ |++.|+++|+++++||||||+||++.  ++++   ++||++.+|+++++  |||+|
T Consensus        83 l~~~~~~~~~~gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~--~~~~---~~GS~a~~vl~~s~--~pVlv  154 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTN--LKEI---LLGSVTENVIKKSN--KPVLV  154 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSC--CTTC---SSCHHHHHHHHHCC--SCEEE
T ss_pred             HHHHHHHHHhcCCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCc--cccc---ccCcHHHHHHhcCC--CCEEE
Confidence            99999999999999999988885 69999999999999999999999977  6887   78999999999998  99999


Q ss_pred             EcCCc
Q 021587          265 VCEGK  269 (310)
Q Consensus       265 V~~~k  269 (310)
                      |++..
T Consensus       155 V~~~~  159 (160)
T d1mjha_         155 VKRKN  159 (160)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            99863
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure