Citrus Sinensis ID: 021601

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MKEQVCVSSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
ccccEEEccccEEEcccEEEEEEEEcccccEEEEEEcccccEEEccEEEEEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccEEEEEEEEcccccccccEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEEccccccccccccccEEEEEEEccccccccccEEEEccccccEEEEEccEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHcccccccEEcccccccccccccccccccccccc
cccEEEEEEccccccccccEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEccHHccccccccccEEEEEEEccccccccccEEEEccccccEEEEEEcEEEccEEccccccccccccccccccHHHHHcccHHHHHHHHHHHHHcEEEEccccccccccccccccccHHHHHHHcccccEEEcccccccccccccccccccccccc
mkeqvcvsssysffFPVFVYLISvpvrvseydfycvytgsgfvshdlylhgffsasiklpadytAGVVVAFYMsngdmfeknhdeidfeflgnirgkdwriqtniygngstsigreerynlwfdpsddfhqysilwtdsqiifyidgipirefkrtasmggdfpakpmsLYATIwdgsdwatnggkyrvnykyapyvtefsdfvlhgcsfdpieqtsskcditesskvsiptgvspsqriKMENFRRKhmtysycydqirykvppfecvinpleaerlkvhdpvtfgggrrhhgkrhhrsrssgtkandv
MKEQVCVSSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGnirgkdwriqtniygngstsigREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTsskcditesskvsiptgvspsqrikMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVtfgggrrhhgkrhhrsrssgtkandv
MKEQvcvsssysfffpvfvYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFgggrrhhgkrhhrsrssgTKANDV
****VCVSSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE*****************************NFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF************************
*******SSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSI***VSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVH*****************************
********SSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGG**********************
*KEQVCVSSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQ**********SKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFG***********************
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKEQVCVSSSYSFFFPVFVYLISVPVRVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
Q38909332 Probable xyloglucan endot yes no 0.877 0.819 0.699 1e-116
Q8LDS2333 Probable xyloglucan endot no no 0.867 0.807 0.714 1e-114
Q38908343 Probable xyloglucan endot no no 0.803 0.725 0.617 3e-91
Q8L7H3357 Probable xyloglucan endot no no 0.832 0.722 0.549 5e-82
Q8LC45310 Probable xyloglucan endot no no 0.745 0.745 0.493 4e-64
Q9SV60292 Xyloglucan endotransgluco no no 0.735 0.780 0.461 4e-55
Q9SV61292 Putative xyloglucan endot no no 0.716 0.760 0.436 1e-51
Q9LJR7290 Xyloglucan endotransgluco no no 0.712 0.762 0.429 1e-50
P93046293 Probable xyloglucan endot no no 0.722 0.764 0.401 3e-47
Q9XIW1293 Probable xyloglucan endot no no 0.719 0.761 0.406 1e-46
>sp|Q38909|XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1 Back     alignment and function desciption
 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 191/273 (69%), Positives = 229/273 (83%), Gaps = 1/273 (0%)

Query: 38  TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
           TGSGFVS+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG+
Sbjct: 61  TGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGR 120

Query: 98  DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 157
           +WRIQTNIYGNGST +GREERYNLWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTA
Sbjct: 121 EWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTA 180

Query: 158 SMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTS 217
           SMGGDFPAKPMSLY+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  
Sbjct: 181 SMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFP 240

Query: 218 SKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAER 277
           S C       + + + ++ SQR KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+R
Sbjct: 241 S-CKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKR 299

Query: 278 LKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV 310
           L+V+DPVTFGG    H +  HRSRS   +   +
Sbjct: 300 LRVYDPVTFGGIPHGHRRGKHRSRSRLARTESI 332
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q8LDS2|XTH27_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2 Back     alignment and function description
>sp|Q38908|XTH30_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7H3|XTH29_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1 Back     alignment and function description
>sp|Q8LC45|XTH33_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2 Back     alignment and function description
>sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJR7|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1 Back     alignment and function description
>sp|P93046|XTH31_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
255573236338 Xyloglucan endotransglucosylase/hydrolas 0.864 0.792 0.833 1e-127
449449082331 PREDICTED: probable xyloglucan endotrans 0.864 0.809 0.764 1e-127
449481291331 PREDICTED: probable xyloglucan endotrans 0.864 0.809 0.761 1e-126
449504255333 PREDICTED: probable xyloglucan endotrans 0.841 0.783 0.806 1e-126
449450129333 PREDICTED: probable xyloglucan endotrans 0.841 0.783 0.802 1e-126
187373000336 xyloglucan endotransglucosylase/hydrolas 0.8 0.738 0.839 1e-123
224099595336 predicted protein [Populus trichocarpa] 0.864 0.797 0.851 1e-123
356512283338 PREDICTED: probable xyloglucan endotrans 0.803 0.736 0.816 1e-123
124109193336 xyloglucan endotransglycosylase/hydrolas 0.796 0.735 0.855 1e-123
356521179338 PREDICTED: probable xyloglucan endotrans 0.841 0.772 0.787 1e-123
>gi|255573236|ref|XP_002527547.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223533097|gb|EEF34856.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/270 (83%), Positives = 244/270 (90%), Gaps = 2/270 (0%)

Query: 38  TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
           TGSGFVS DLYLHG+FSASIKLPADYTAGVVVAFYMSNGD+FEKNHDEIDFEFLGNIRGK
Sbjct: 68  TGSGFVSQDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDIFEKNHDEIDFEFLGNIRGK 127

Query: 98  DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 157
           DWRIQTNIYGNGSTSIGREERY+LWFDPSDDFHQYSILWTDSQIIFY+D +PIRE KRT 
Sbjct: 128 DWRIQTNIYGNGSTSIGREERYSLWFDPSDDFHQYSILWTDSQIIFYVDNVPIREVKRTV 187

Query: 158 SMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTS 217
           SMGGDFP+KPMSLYATIWDGSDWATNGGKYRVNY+YAPYVT+FSDFVLHGC+ DPIEQ  
Sbjct: 188 SMGGDFPSKPMSLYATIWDGSDWATNGGKYRVNYRYAPYVTQFSDFVLHGCAVDPIEQI- 246

Query: 218 SKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAER 277
           SKCD  +SS+ +IPTGV+P Q+IKMENFR K+MTYSYCYD++RYK PP EC++NP EA R
Sbjct: 247 SKCDAAQSSQ-AIPTGVTPLQKIKMENFRTKYMTYSYCYDRVRYKNPPSECLVNPQEAAR 305

Query: 278 LKVHDPVTFGGGRRHHGKRHHRSRSSGTKA 307
           LK  DPVTFGG RRH GKR  RSRS    A
Sbjct: 306 LKSFDPVTFGGARRHRGKRQRRSRSGHNDA 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449082|ref|XP_004142294.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449481291|ref|XP_004156140.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449504255|ref|XP_004162296.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450129|ref|XP_004142816.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187373000|gb|ACD03234.1| xyloglucan endotransglucosylase/hydrolase 10 [Malus x domestica] Back     alignment and taxonomy information
>gi|224099595|ref|XP_002311545.1| predicted protein [Populus trichocarpa] gi|222851365|gb|EEE88912.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512283|ref|XP_003524850.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Glycine max] Back     alignment and taxonomy information
>gi|124109193|gb|ABM91072.1| xyloglucan endotransglycosylase/hydrolase precursor XTH-39 [Populus tremula] Back     alignment and taxonomy information
>gi|356521179|ref|XP_003529235.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2006857332 XTH28 "xyloglucan endotransglu 0.8 0.746 0.734 7.5e-105
TAIR|locus:2059728333 EXGT-A3 "endoxyloglucan transf 0.8 0.744 0.738 1.4e-103
TAIR|locus:2031750343 XTH30 "xyloglucan endotransglu 0.774 0.699 0.627 1.4e-85
TAIR|locus:2117189357 XTH29 "xyloglucan endotransglu 0.783 0.680 0.564 3e-78
TAIR|locus:2194554310 XTH33 "xyloglucan:xyloglucosyl 0.745 0.745 0.497 2.1e-61
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.725 0.770 0.463 5.5e-54
TAIR|locus:2086959290 XTH3 "xyloglucan endotransgluc 0.735 0.786 0.432 2.2e-50
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.712 0.756 0.451 2.8e-50
TAIR|locus:2075919293 XTH31 "XYLOGLUCAN ENDOTRANSGLU 0.722 0.764 0.414 1.6e-47
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.719 0.761 0.406 5.4e-47
TAIR|locus:2006857 XTH28 "xyloglucan endotransglucosylase/hydrolase 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 183/249 (73%), Positives = 218/249 (87%)

Query:    38 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
             TGSGFVS+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG+
Sbjct:    61 TGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGR 120

Query:    98 DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 157
             +WRIQTNIYGNGST +GREERYNLWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTA
Sbjct:   121 EWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTA 180

Query:   158 SMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTS 217
             SMGGDFPAKPMSLY+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  
Sbjct:   181 SMGGDFPAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFP 240

Query:   218 SKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAER 277
             S C       + + + ++ SQR KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+R
Sbjct:   241 S-CKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKR 299

Query:   278 LKVHDPVTF 286
             L+V+DPVTF
Sbjct:   300 LRVYDPVTF 308
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0010154 "fruit development" evidence=IMP
GO:0080086 "stamen filament development" evidence=IMP
TAIR|locus:2059728 EXGT-A3 "endoxyloglucan transferase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031750 XTH30 "xyloglucan endotransglucosylase/hydrolase 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117189 XTH29 "xyloglucan endotransglucosylase/hydrolase 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194554 XTH33 "xyloglucan:xyloglucosyl transferase 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086959 XTH3 "xyloglucan endotransglucosylase/hydrolase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075919 XTH31 "XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38909XTH28_ARATH2, ., 4, ., 1, ., 2, 0, 70.69960.87740.8192yesno
Q8LDS2XTH27_ARATH2, ., 4, ., 1, ., 2, 0, 70.71420.86770.8078nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VIII2102
SubName- Full=Putative uncharacterized protein; (337 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-127
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 4e-66
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 2e-52
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 7e-27
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 2e-23
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 4e-23
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 4e-12
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 5e-11
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 4e-09
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 3e-08
cd02177269 cd02177, GH16_kappa_carrageenase, Kappa-carrageena 3e-06
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  363 bits (933), Expect = e-127
 Identities = 116/233 (49%), Positives = 153/233 (65%), Gaps = 5/233 (2%)

Query: 37  YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRG 96
            +GSGF S + YL GFFS  IKLP   +AG V AFY+S+      NHDEIDFEFLGN+ G
Sbjct: 35  SSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHDEIDFEFLGNVTG 92

Query: 97  KDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 156
           + + +QTN++ NG    GRE+R  LWFDP+ DFH YSILW   QI+FY+D +PIR FK  
Sbjct: 93  QPYTLQTNVFANGVG--GREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNN 150

Query: 157 ASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQ 215
            ++G  +P+ +PM +YA+IWDGSDWAT GG+ ++++ YAP+V  + DF L GC  DP + 
Sbjct: 151 EALGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDS 210

Query: 216 TSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
            SS     +    S    +S +Q+  ME  RR +M Y YC D+ RY VPP EC
Sbjct: 211 FSSCSCTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185686 cd02177, GH16_kappa_carrageenase, Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.97
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.97
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.96
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.96
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.91
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.75
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.58
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.53
smart00560133 LamGL LamG-like jellyroll fold domain. 92.16
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 90.45
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 90.4
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 88.06
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 87.91
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 85.77
KOG1834 952 consensus Calsyntenin [Extracellular structures] 80.8
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
Probab=100.00  E-value=3.1e-74  Score=534.88  Aligned_cols=233  Identities=50%  Similarity=0.932  Sum_probs=214.5

Q ss_pred             ccceeccCccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcC
Q 021601           29 SEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGN  108 (310)
Q Consensus        29 ~~~~~ld~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~  108 (310)
                      ...|+||+++||+|.||..|+||+||||||||+|+++|+||||||++++  |+.++|||||+||+.+|+|+++|||+|.+
T Consensus        27 ~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~~EID~E~lGn~~g~~~~~qtnv~~~  104 (263)
T cd02176          27 SVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFAN  104 (263)
T ss_pred             EEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCCCeEEEEEecccCCCceEEEEEEeCC
Confidence            4568999999999999999999999999999998889999999999986  78999999999999999999999999998


Q ss_pred             CCcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCcc
Q 021601          109 GSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKY  187 (310)
Q Consensus       109 G~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~  187 (310)
                      |.  +++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+|| ++||+|++|||+||+|||+||++
T Consensus       105 g~--g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~  182 (263)
T cd02176         105 GV--GGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRV  182 (263)
T ss_pred             CC--CCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccceEEEEEeeEcCCCcccCCCcc
Confidence            86  5688899999999999999999999999999999999999998877778999 59999999999999999999999


Q ss_pred             cccCCCCCEEEEEcEEEEeeeecCCCCCCCCcccC---CCCCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCCC
Q 021601          188 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDI---TESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVP  264 (310)
Q Consensus       188 ~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~---~~~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~~  264 (310)
                      ++||+++||+|.|++|+|.||.+++..   ..|..   ..|+....+++|+++|+++|+|||+||||||||+|++|||.+
T Consensus       183 ~~d~~~aPf~a~~~~~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~~  259 (263)
T cd02176         183 KIDWSYAPFVASYRDFKLDGCVVDPGD---SFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPVP  259 (263)
T ss_pred             cccCCCCCeeEEEeeEEEeeeecCCCC---ccccCCCccccccccccccCCHHHHHHHHHHHHCCEEEecCCCCCcCCCC
Confidence            999999999999999999999987642   24543   235555667899999999999999999999999999999999


Q ss_pred             CCCc
Q 021601          265 PFEC  268 (310)
Q Consensus       265 p~EC  268 (310)
                      ||||
T Consensus       260 p~ec  263 (263)
T cd02176         260 PPEC  263 (263)
T ss_pred             cCCC
Confidence            9999

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>KOG1834 consensus Calsyntenin [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 4e-51
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 8e-51
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 9e-50
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 9e-50
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 2e-41
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 1e-12
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 2e-11
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 2e-11
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 2e-11
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 2e-11
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 2e-11
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 1e-10
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 2e-09
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-09
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 3e-09
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 1e-08
1ajo_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 7e-04
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 12/234 (5%)
Query: 38  TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
           +GSGF S + Y  G+F A+IKL + YTAGV+ +FY+SN   +   HDEID EFLG I GK
Sbjct: 47  SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 106
Query: 98  DWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFK 154
            + +QTN++  GS     IGRE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR + 
Sbjct: 107 PYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYP 166
Query: 155 RTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE 214
           R +     FP +PM +Y ++WD S WAT  GKY+ +Y+Y P+V ++ DF L  C+     
Sbjct: 167 RKSD--ATFPLRPMWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTV---- 220
Query: 215 QTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
           + +S C+    + VS    +S  Q   ME  ++ +M Y+YC D  R      EC
Sbjct: 221 EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 7e-79
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 3e-78
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 5e-61
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 5e-58
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 4e-56
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1e-54
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 2e-48
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 1e-47
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 8e-37
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-20
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 4e-16
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 4e-12
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 8e-12
3rq0_A269 Glycosyl hydrolases family protein 16; structural 4e-11
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 6e-11
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 7e-11
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 9e-11
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 1e-10
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 5e-10
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 8e-10
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 3e-09
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 4e-09
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 9e-08
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 9e-07
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 2e-06
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 3e-06
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
 Score =  240 bits (613), Expect = 7e-79
 Identities = 99/235 (42%), Positives = 142/235 (60%), Gaps = 12/235 (5%)

Query: 37  YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRG 96
            +GSGF S + Y  G+F A+IKL + YTAGV+ +FY+SN   +   HDEID EFLG I G
Sbjct: 49  TSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPG 108

Query: 97  KDWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREF 153
           K + +QTN++  GS     IGRE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR +
Sbjct: 109 KPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRY 168

Query: 154 KRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPI 213
            R +     FP +P+ +Y ++WD S WAT  GKY+ +Y+Y P+V ++ DF L  C+ +  
Sbjct: 169 PRKSDAT--FPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE-- 224

Query: 214 EQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
              +S C+    S       +S  Q   ME  ++ +M Y+YC D  R      EC
Sbjct: 225 --AASSCNPASVSPYG---QLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Length = 346 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.98
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.97
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.97
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.97
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.93
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.92
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.79
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.74
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 89.99
4dqa_A355 Uncharacterized protein; two domains structure, DU 80.29
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-69  Score=504.34  Aligned_cols=234  Identities=38%  Similarity=0.746  Sum_probs=212.9

Q ss_pred             cceeccCccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcCC
Q 021601           30 EYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNG  109 (310)
Q Consensus        30 ~~~~ld~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G  109 (310)
                      -.|+||+++||+|.||+.|+||+||||||||+|+++|+||||||++++   |.++|||||++|+++++|+++|+|+|.+|
T Consensus        39 l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~---p~~gEIDmE~lG~~~g~~~tvhtn~~~~g  115 (278)
T 1umz_A           39 IQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGG  115 (278)
T ss_dssp             EEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSS---SSCCEEEEEEECCSTTSCCEEEEEEEBTT
T ss_pred             EEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCC---CCCCeEEEEEeCCCCCCceEEEEEEecCC
Confidence            457899999999999999999999999999998779999999999985   78999999999999889999999999988


Q ss_pred             CcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCccc
Q 021601          110 STSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYR  188 (310)
Q Consensus       110 ~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~~  188 (310)
                      .  +++++++.+++|++++||+|+|+|+|++|+|||||++|+++++.+..|..|| ++||+|+||||+||+|+++||.++
T Consensus       116 ~--~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P~~lilnlw~GG~Wa~~gG~~~  193 (278)
T 1umz_A          116 K--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK  193 (278)
T ss_dssp             B--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEEEEEEEECTTTSSGGGTSC
T ss_pred             C--CCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcCCCceEEEEEEEECCcccCCCCccc
Confidence            7  4678888899999999999999999999999999999999998776678899 999999999999999999999888


Q ss_pred             ccCCCCCEEEEEcEEEEeeeecCCCCCCCCcccCC--CCCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCCCCC
Q 021601          189 VNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT--ESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPF  266 (310)
Q Consensus       189 ~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~--~~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~~p~  266 (310)
                      +||+++||+++|+.+++.+|..+..   ...|...  .|+....+++|++.|+++|+|||+||||||||+|++|||++||
T Consensus       194 ~d~~~~p~v~~vr~~~~~~c~~~~~---~~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~  270 (278)
T 1umz_A          194 TDWSKAPFIASYRSFHIDGCEASVE---AKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPSMPP  270 (278)
T ss_dssp             CCGGGCCEEEEEEEEEEEEEECCSS---SCCCTTTTCSGGGSGGGSSCCHHHHHHHHHHHHHTEEEEGGGCTTTCSSCCT
T ss_pred             cCCCCCCEEEEEEEEEEecccCCCC---CCccCCCcccccccCccccCCHHHHHHHHHHHHCCeEEecCCCCCcCCCCCc
Confidence            9999999999999999999997532   2369654  2555445678999999999999999999999999999999999


Q ss_pred             CccCC
Q 021601          267 ECVIN  271 (310)
Q Consensus       267 EC~~~  271 (310)
                      ||.++
T Consensus       271 ec~~~  275 (278)
T 1umz_A          271 ECKRD  275 (278)
T ss_dssp             HHHHH
T ss_pred             ccCCC
Confidence            99743
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 7e-73
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 6e-38
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 2e-20
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 3e-18
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 7e-12
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 2e-08
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 1e-06
d1o4za_295 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 0.001
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  223 bits (570), Expect = 7e-73
 Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 7/236 (2%)

Query: 37  YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRG 96
           YTG+GF S   YL G FS  +KL    +AG V AFY+S+ +     HDEIDFEFLGN  G
Sbjct: 35  YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTG 91

Query: 97  KDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 156
           + + +QTN++  G     RE+R  LWFDP+ +FH YS+LW    I+F +D +PIR FK  
Sbjct: 92  QPYILQTNVFTGGKG--DREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNC 149

Query: 157 ASMGG-DFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQ 215
             +G      +PM +Y+++W+  DWAT GG  + ++  AP++  +  F + GC     E 
Sbjct: 150 KDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASV-EA 208

Query: 216 TSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVIN 271
                             +   Q  ++   R+K+  Y+YC D+ RY   P EC  +
Sbjct: 209 KFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPSMPPECKRD 264
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 295 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.96
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.96
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.95
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 92.48
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 92.02
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 91.36
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 90.52
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 90.0
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 86.44
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 86.02
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 85.29
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 84.51
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 82.21
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 81.07
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=4.8e-71  Score=512.22  Aligned_cols=236  Identities=38%  Similarity=0.730  Sum_probs=215.0

Q ss_pred             ccceeccCccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcC
Q 021601           29 SEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGN  108 (310)
Q Consensus        29 ~~~~~ld~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~  108 (310)
                      ...|.||+++||+|+||++|+||+||||||||+|+++|++++|||++.   ++.++|||||++|+..++|+++|||+|.+
T Consensus        27 ~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~---~~~~dEIDiE~lG~~~~~~~~v~tn~~~~  103 (267)
T d1umza_          27 EIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQ---NSEHDEIDFEFLGNRTGQPYILQTNVFTG  103 (267)
T ss_dssp             EEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECS---SSSCCEEEEEEECCSTTSCCEEEEEEEBT
T ss_pred             EEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCC---CCCCCeEEEEEecccCCcccEEEeeEeCC
Confidence            355788999999999999999999999999999877899999999876   46899999999999999999999999998


Q ss_pred             CCcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCcc
Q 021601          109 GSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKY  187 (310)
Q Consensus       109 G~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~  187 (310)
                      |.  +++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++| ++||+|++|||+||+|||+||..
T Consensus       104 g~--g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm~i~~niW~g~~Wat~gG~~  181 (267)
T d1umza_         104 GK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLE  181 (267)
T ss_dssp             TB--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEEEEEEEECTTTSSGGGTS
T ss_pred             CC--CCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEEEEEEeeeeCCCccccCCee
Confidence            87  5788899999999999999999999999999999999999999888888888 89999999999999999999999


Q ss_pred             cccCCCCCEEEEEcEEEEeeeecCCCCCCCCccc--CCCCCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCCCC
Q 021601          188 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCD--ITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPP  265 (310)
Q Consensus       188 ~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~C~--~~~~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~~p  265 (310)
                      ++||+++||+|.|++|.|.||.+++..   ..|.  ...|++...++.|+..|+++|+|||+||||||||+|++|||++|
T Consensus       182 ~~d~~~aPf~a~~~~~~v~~c~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~~p  258 (267)
T d1umza_         182 KTDWSKAPFIASYRSFHIDGCEASVEA---KFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPSMP  258 (267)
T ss_dssp             CCCGGGCCEEEEEEEEEEEEEECCSSS---CCCTTTTCSGGGSGGGSSCCHHHHHHHHHHHHHTEEEEGGGCTTTCSSCC
T ss_pred             eecCCCCCEEEEEEEEEEEecccCCCC---cccCCCCCccccccccccCCHHHHHHHHHHHHCCcEEccCCCCCcCCCCC
Confidence            999999999999999999999886542   2343  23355566678999999999999999999999999999999999


Q ss_pred             CCccCCh
Q 021601          266 FECVINP  272 (310)
Q Consensus       266 ~EC~~~~  272 (310)
                      |||.+++
T Consensus       259 ~EC~~~~  265 (267)
T d1umza_         259 PECKRDR  265 (267)
T ss_dssp             THHHHHT
T ss_pred             cccCCCC
Confidence            9998764
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure